Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold337
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2178121
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.32
Warning! 137747 characters in sequence are not A, C, G, or T
File 3 of 7
Found at i:660422 original size:29 final size:29
Alignment explanation
Indices: 660366--660782 Score: 513
Period size: 29 Copynumber: 14.9 Consensus size: 29
660356 TAAATAAATT
*
660366 AGGTTAGGGTTTTTAAATAAATTAGGTT-
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
*
660394 A---T--GGTTTTTAATTAAATTAGGGTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
*
660418 GGGTTAGGGTTTTTAATTAAATTAGGTTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
* *
660447 AGGTTAGGGTTTTTGATTAAATTAGGGTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
* *
660476 GGGTTAGGG-TTTTAATTAAATTAGGGTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
* ** *
660504 GGGTTAGGGTTAAT-GTTAAATTAGGTTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
*
660532 AGATTAGGGTTTTTAATTAAATTAGGTTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
* *
660561 ATGTTAGGG-TTTTAGTTAAATTAGGTTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
* ****
660589 GGGTTAGGG-TTAGGGTTAAATTAGGTTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
*
660617 AGGTTAGGGTTTTTAATTAAATTAGGGTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
*
660646 GGGTTA-GG-TTTTAATTAAATTAGGTTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
660673 AGGTTAGGGTTTTTAATTAAATTAGAG-TA
1 AGGTTAGGGTTTTTAATTAAATTAG-GTTA
* *
660702 GGGTTA-GG-TTTTAATCAAATTAGGTTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
660729 AGGTTAGGGTTTTTAATTAAATTAGGTTA
1 AGGTTAGGGTTTTTAATTAAATTAGGTTA
660758 AGGTTAGGGTTTTTAATTAAATTAG
1 AGGTTAGGGTTTTTAATTAAATTAG
660783 NNNNNNNNNN
Statistics
Matches: 335, Mismatches: 39, Indels: 29
0.83 0.10 0.07
Matches are distributed among these distances:
23 19 0.06
25 1 0.00
26 1 0.00
27 45 0.13
28 107 0.32
29 161 0.48
30 1 0.00
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.42
Consensus pattern (29 bp):
AGGTTAGGGTTTTTAATTAAATTAGGTTA
Found at i:660543 original size:85 final size:86
Alignment explanation
Indices: 660366--660782 Score: 514
Period size: 85 Copynumber: 5.0 Consensus size: 86
660356 TAAATAAATT
* * * *
660366 AGGTTAGGGTTTTTAAATAAATTA-GGTTA---T-GGTTTTTAATTAAATTAGGGTAGGGTTAGG
1 AGGTTAGGGTTTTTAATTAAATTAGGGTAAGGTTAGGGTTTTAATTAAATTAGGTTAGGGTTAGG
*
660426 GTTTTTAATTAAATTAGGTTA
66 GTTATTAATTAAATTAGGTTA
* * *
660447 AGGTTAGGGTTTTTGATTAAATTAGGGTAGGGTTAGGGTTTTAATTAAATTAGGGTAGGGTTAGG
1 AGGTTAGGGTTTTTAATTAAATTAGGGTAAGGTTAGGGTTTTAATTAAATTAGGTTAGGGTTAGG
* *
660512 GTTAAT-GTTAAATTAGGTTA
66 GTTATTAATTAAATTAGGTTA
* * * *
660532 AGATTAGGGTTTTTAATTAAATTAGGTTAATGTTAGGGTTTTAGTTAAATTAGGTTAGGGTTAGG
1 AGGTTAGGGTTTTTAATTAAATTAGGGTAAGGTTAGGGTTTTAATTAAATTAGGTTAGGGTTAGG
***
660597 GTTA-GGGTTAAATTAGGTTA
66 GTTATTAATTAAATTAGGTTA
* *
660617 AGGTTAGGGTTTTTAATTAAATTAGGGTAGGGTTA-GGTTTTAATTAAATTAGGTTAAGGTTAGG
1 AGGTTAGGGTTTTTAATTAAATTAGGGTAAGGTTAGGGTTTTAATTAAATTAGGTTAGGGTTAGG
*
660681 GTTTTTAATTAAATTAGAG-TA
66 GTTATTAATTAAATTAG-GTTA
* * * *
660702 GGGTTA-GG-TTTTAATCAAATTAGGTTAAGGTTAGGGTTTTTAATTAAATTAGGTTAAGGTTAG
1 AGGTTAGGGTTTTTAATTAAATTAGGGTAAGGTTAGGG-TTTTAATTAAATTAGGTTAGGGTTAG
*
660765 GGTTTTTAATTAAATTAG
65 GGTTATTAATTAAATTAG
660783 NNNNNNNNNN
Statistics
Matches: 296, Mismatches: 30, Indels: 16
0.87 0.09 0.05
Matches are distributed among these distances:
81 22 0.07
82 3 0.01
83 22 0.07
84 34 0.11
85 181 0.61
86 34 0.11
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.42
Consensus pattern (86 bp):
AGGTTAGGGTTTTTAATTAAATTAGGGTAAGGTTAGGGTTTTAATTAAATTAGGTTAGGGTTAGG
GTTATTAATTAAATTAGGTTA
Found at i:660628 original size:56 final size:56
Alignment explanation
Indices: 660389--660782 Score: 463
Period size: 56 Copynumber: 6.9 Consensus size: 56
660379 TAAATAAATT
* *
660389 AGGTTATGGTTTTTAATTAAATTAGGGTAGGGTTAGGGTTTTTAATTAAATTAGGTTA
1 AGGTTA-GGGTTTTAATTAAATTAGGGTAGGGTTAGGG-TTATAATTAAATTAGGTTA
* * *
660447 AGGTTAGGGTTTTTGATTAAATTAGGGTAGGGTTAGGGTTTTAATTAAATTAGGGTA
1 AGGTTAGGG-TTTTAATTAAATTAGGGTAGGGTTAGGGTTATAATTAAATTAGGTTA
* * * * *
660504 GGGTTAGGG--TTAATGTTAAATTAGGTTAAGATTAGGGTTTTTAATTAAATTAGGTTA
1 AGGTTAGGGTTTTAA--TTAAATTAGGGTAGGGTTAGGG-TTATAATTAAATTAGGTTA
* * * ***
660561 ATGTTAGGGTTTTAGTTAAATTAGGTTAGGGTTAGGGTTAGGGTTAAATTAGGTTA
1 AGGTTAGGGTTTTAATTAAATTAGGGTAGGGTTAGGGTTATAATTAAATTAGGTTA
*
660617 AGGTTAGGGTTTTTAATTAAATTAGGGTAGGGTTA-GGTTTTAATTAAATTAGGTTA
1 AGGTTAGGG-TTTTAATTAAATTAGGGTAGGGTTAGGGTTATAATTAAATTAGGTTA
* * *
660673 AGGTTAGGGTTTTTAATTAAATTAGAGTAGGGTTA-GGTTTTAATCAAATTAGGTTA
1 AGGTTAGGG-TTTTAATTAAATTAGGGTAGGGTTAGGGTTATAATTAAATTAGGTTA
* * *
660729 AGGTTAGGGTTTTTAATTAAATTAGGTTAAGGTTAGGGTTTTTAATTAAATTAG
1 AGGTTAGGG-TTTTAATTAAATTAGGGTAGGGTTAGGG-TTATAATTAAATTAG
660783 NNNNNNNNNN
Statistics
Matches: 296, Mismatches: 31, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
54 3 0.01
56 145 0.49
57 98 0.33
58 47 0.16
59 3 0.01
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.42
Consensus pattern (56 bp):
AGGTTAGGGTTTTAATTAAATTAGGGTAGGGTTAGGGTTATAATTAAATTAGGTTA
Found at i:663176 original size:124 final size:124
Alignment explanation
Indices: 662956--663305 Score: 657
Period size: 124 Copynumber: 2.8 Consensus size: 124
662946 CCCAAACTTG
662956 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
663021 TAGAAGTGATTTTATACTATTTGCTCAGAAATGTCAAAAAAATTTATTTCTTACATGAC
66 TAGAAGTGATTTTATACTATTTGCTCAGAAATGTCAAAAAAATTTATTTCTTACATGAC
663080 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
663145 TAGAAGTGATTTTATACTATTTGCTCAGAAATGTCAAAAAAATTTATTTCTTACATGAC
66 TAGAAGTGATTTTATACTATTTGCTCAGAAATGTCAAAAAAATTTATTTCTTACATGAC
663204 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
* * *
663269 TAGAAGCGATTTTTTACTATTTGAC-CAGAAACGTCAA
66 TAGAAGTGATTTTATACTATTTG-CTCAGAAATGTCAA
663306 CTCGAAATAA
Statistics
Matches: 222, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
124 221 1.00
125 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (124 bp):
CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
TAGAAGTGATTTTATACTATTTGCTCAGAAATGTCAAAAAAATTTATTTCTTACATGAC
Found at i:669877 original size:3 final size:3
Alignment explanation
Indices: 669869--669925 Score: 107
Period size: 3 Copynumber: 19.3 Consensus size: 3
669859 CTTTCAACTT
669869 TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
669916 TTA TTA TTA T
1 TTA TTA TTA T
669926 CTTCCAACTT
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 51 0.96
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:675909 original size:2 final size:2
Alignment explanation
Indices: 675902--676138 Score: 474
Period size: 2 Copynumber: 118.5 Consensus size: 2
675892 TTAGGGGAGT
675902 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
675944 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
675986 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
676028 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
676070 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
676112 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
676139 CAACAATCTT
Statistics
Matches: 235, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 235 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:676181 original size:18 final size:18
Alignment explanation
Indices: 676147--676181 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
676137 GACAACAATC
**
676147 TTGAAGAAAATGGAAGAA
1 TTGAAGAAAATAAAAGAA
676165 TTGAAGAAAATAAAAGA
1 TTGAAGAAAATAAAAGA
676182 GAAGAGAACC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.23, T:0.17
Consensus pattern (18 bp):
TTGAAGAAAATAAAAGAA
Found at i:684324 original size:3 final size:3
Alignment explanation
Indices: 684318--684356 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
684308 TTATTTAATA
684318 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
684357 TACTTTTAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:684755 original size:28 final size:23
Alignment explanation
Indices: 684703--684747 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
684693 GATCCGTAAC
684703 TTTCATATTATTTTAACCAAAAT
1 TTTCATATTATTTTAACCAAAAT
684726 TTTCATATTATTTTAACCAAAA
1 TTTCATATTATTTTAACCAAAA
684748 ACAAATTTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (23 bp):
TTTCATATTATTTTAACCAAAAT
Found at i:693326 original size:28 final size:27
Alignment explanation
Indices: 693213--693466 Score: 251
Period size: 27 Copynumber: 9.3 Consensus size: 27
693203 TGCGAATCGT
* * *
693213 GGGTAAAA-TAACTGAATTACCCCTGAA
1 GGGTAAAATTATC-GAAATACCCTTGAA
* * * **
693240 GGGTAAAATGACCGAATTACCCACGAA
1 GGGTAAAATTATCGAAATACCCTTGAA
*
693267 GGGTAAAATTATCGAAATA-CCTTAAA
1 GGGTAAAATTATCGAAATACCCTTGAA
*
693293 GGGTAAAAATTATCGAAATACCCTTAAA
1 GGGT-AAAATTATCGAAATACCCTTGAA
* *
693321 GGGTAAAATTACCGAAACACCCTTGAA
1 GGGTAAAATTATCGAAATACCCTTGAA
* * *
693348 GGGTAAAAATTAACGTAATACCCTTGAT
1 GGGT-AAAATTATCGAAATACCCTTGAA
* *
693376 GGGTAAAATTATCAAAATACCATTGAA
1 GGGTAAAATTATCGAAATACCCTTGAA
* * *
693403 GGGTAAAAATTACCAAAATACCCTCGAA
1 GGGT-AAAATTATCGAAATACCCTTGAA
* * *
693431 GGGTAAAATTATCAAAATACCCTCGAT
1 GGGTAAAATTATCGAAATACCCTTGAA
693458 GGGTAAAAT
1 GGGTAAAAT
693467 GATCTTTATA
Statistics
Matches: 195, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
26 8 0.04
27 127 0.65
28 60 0.31
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.23
Consensus pattern (27 bp):
GGGTAAAATTATCGAAATACCCTTGAA
Found at i:693369 original size:55 final size:55
Alignment explanation
Indices: 693230--693465 Score: 269
Period size: 55 Copynumber: 4.3 Consensus size: 55
693220 ATAACTGAAT
* * * * ** *
693230 TACCCCTGAAGGGT-AAAATGACCGAATTACCCACGAAGGGTAAAATTATCGAAA
1 TACCCTTGAAGGGTAAAAATTAACGAAATACCCTTGAAGGGTAAAATTATCAAAA
* * * * *
693284 TA-CCTTAAAGGGTAAAAATTATCGAAATACCCTTAAAGGGTAAAATTACCGAAA
1 TACCCTTGAAGGGTAAAAATTAACGAAATACCCTTGAAGGGTAAAATTATCAAAA
* * *
693338 CACCCTTGAAGGGTAAAAATTAACGTAATACCCTTGATGGGTAAAATTATCAAAA
1 TACCCTTGAAGGGTAAAAATTAACGAAATACCCTTGAAGGGTAAAATTATCAAAA
* * * *
693393 TACCATTGAAGGGTAAAAATTACCAAAATACCCTCGAAGGGTAAAATTATCAAAA
1 TACCCTTGAAGGGTAAAAATTAACGAAATACCCTTGAAGGGTAAAATTATCAAAA
* *
693448 TACCCTCGATGGGTAAAA
1 TACCCTTGAAGGGTAAAA
693466 TGATCTTTAT
Statistics
Matches: 153, Mismatches: 27, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
53 9 0.06
54 36 0.24
55 108 0.71
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.22
Consensus pattern (55 bp):
TACCCTTGAAGGGTAAAAATTAACGAAATACCCTTGAAGGGTAAAATTATCAAAA
Found at i:693478 original size:82 final size:81
Alignment explanation
Indices: 693236--693466 Score: 293
Period size: 82 Copynumber: 2.8 Consensus size: 81
693226 GAATTACCCC
* * * * *
693236 TGAAGGGTAAAATGACCGAATTACCCACGAAGGGTAAAATTATCGAAATA-CCTTAAAGGGTAAA
1 TGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTTGATGGGT-AA
* *
693300 AATTATCGAAATACCCT
65 AATTATCAAAATACCAT
* * * * *
693317 TAAAGGGTAAAATTACCGAAACACCCTTGAAGGGTAAAAATTAACGTAATACCCTTGATGGGTAA
1 TGAAGGGTAAAATTACCGAAATACCCTCGAAGGGT-AAAATTATCGAAATACCCTTGATGGGTAA
693382 AATTATCAAAATACCAT
65 AATTATCAAAATACCAT
* * *
693399 TGAAGGGTAAAAATTACCAAAATACCCTCGAAGGGTAAAATTATCAAAATACCCTCGATGGGTAA
1 TGAAGGGT-AAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTTGATGGGTAA
693464 AAT
65 AAT
693467 GATCTTTATA
Statistics
Matches: 127, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
81 29 0.23
82 65 0.51
83 33 0.26
ACGTcount: A:0.44, C:0.16, G:0.17, T:0.23
Consensus pattern (81 bp):
TGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTTGATGGGTAAA
ATTATCAAAATACCAT
Found at i:693878 original size:28 final size:28
Alignment explanation
Indices: 693841--693894 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
693831 ACTGTAATGA
* *
693841 TACTGTATTGGGTTAAGGCCCACACTAC
1 TACTGAATTGGGCTAAGGCCCACACTAC
*
693869 TACTGAATTGGGCTAAGGCCCTCACT
1 TACTGAATTGGGCTAAGGCCCACACT
693895 GTACTGTCAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (28 bp):
TACTGAATTGGGCTAAGGCCCACACTAC
Found at i:694490 original size:28 final size:27
Alignment explanation
Indices: 694377--694630 Score: 251
Period size: 27 Copynumber: 9.3 Consensus size: 27
694367 TGCGAATCGT
* * *
694377 GGGTAAAA-TAACTGAATTACCCCTGAA
1 GGGTAAAATTATC-GAAATACCCTTGAA
* * * **
694404 GGGTAAAATGACCGAATTACCCACGAA
1 GGGTAAAATTATCGAAATACCCTTGAA
*
694431 GGGTAAAATTATCGAAATA-CCTTAAA
1 GGGTAAAATTATCGAAATACCCTTGAA
*
694457 GGGTAAAAATTATCGAAATACCCTTAAA
1 GGGT-AAAATTATCGAAATACCCTTGAA
* *
694485 GGGTAAAATTACCGAAACACCCTTGAA
1 GGGTAAAATTATCGAAATACCCTTGAA
* * *
694512 GGGTAAAAATTAACGTAATACCCTTGAT
1 GGGT-AAAATTATCGAAATACCCTTGAA
* *
694540 GGGTAAAATTATCAAAATACCATTGAA
1 GGGTAAAATTATCGAAATACCCTTGAA
* * *
694567 GGGTAAAAATTACCAAAATACCCTCGAA
1 GGGT-AAAATTATCGAAATACCCTTGAA
* * *
694595 GGGTAAAATTATCAAAATACCCTCGAT
1 GGGTAAAATTATCGAAATACCCTTGAA
694622 GGGTAAAAT
1 GGGTAAAAT
694631 GATCTTTATA
Statistics
Matches: 195, Mismatches: 27, Indels: 10
0.84 0.12 0.04
Matches are distributed among these distances:
26 8 0.04
27 127 0.65
28 60 0.31
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.23
Consensus pattern (27 bp):
GGGTAAAATTATCGAAATACCCTTGAA
Found at i:694533 original size:55 final size:55
Alignment explanation
Indices: 694394--694629 Score: 269
Period size: 55 Copynumber: 4.3 Consensus size: 55
694384 ATAACTGAAT
* * * * ** *
694394 TACCCCTGAAGGGT-AAAATGACCGAATTACCCACGAAGGGTAAAATTATCGAAA
1 TACCCTTGAAGGGTAAAAATTAACGAAATACCCTTGAAGGGTAAAATTATCAAAA
* * * * *
694448 TA-CCTTAAAGGGTAAAAATTATCGAAATACCCTTAAAGGGTAAAATTACCGAAA
1 TACCCTTGAAGGGTAAAAATTAACGAAATACCCTTGAAGGGTAAAATTATCAAAA
* * *
694502 CACCCTTGAAGGGTAAAAATTAACGTAATACCCTTGATGGGTAAAATTATCAAAA
1 TACCCTTGAAGGGTAAAAATTAACGAAATACCCTTGAAGGGTAAAATTATCAAAA
* * * *
694557 TACCATTGAAGGGTAAAAATTACCAAAATACCCTCGAAGGGTAAAATTATCAAAA
1 TACCCTTGAAGGGTAAAAATTAACGAAATACCCTTGAAGGGTAAAATTATCAAAA
* *
694612 TACCCTCGATGGGTAAAA
1 TACCCTTGAAGGGTAAAA
694630 TGATCTTTAT
Statistics
Matches: 153, Mismatches: 27, Indels: 3
0.84 0.15 0.02
Matches are distributed among these distances:
53 9 0.06
54 36 0.24
55 108 0.71
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.22
Consensus pattern (55 bp):
TACCCTTGAAGGGTAAAAATTAACGAAATACCCTTGAAGGGTAAAATTATCAAAA
Found at i:694642 original size:82 final size:81
Alignment explanation
Indices: 694400--694630 Score: 293
Period size: 82 Copynumber: 2.8 Consensus size: 81
694390 GAATTACCCC
* * * * *
694400 TGAAGGGTAAAATGACCGAATTACCCACGAAGGGTAAAATTATCGAAATA-CCTTAAAGGGTAAA
1 TGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTTGATGGGT-AA
* *
694464 AATTATCGAAATACCCT
65 AATTATCAAAATACCAT
* * * * *
694481 TAAAGGGTAAAATTACCGAAACACCCTTGAAGGGTAAAAATTAACGTAATACCCTTGATGGGTAA
1 TGAAGGGTAAAATTACCGAAATACCCTCGAAGGGT-AAAATTATCGAAATACCCTTGATGGGTAA
694546 AATTATCAAAATACCAT
65 AATTATCAAAATACCAT
* * *
694563 TGAAGGGTAAAAATTACCAAAATACCCTCGAAGGGTAAAATTATCAAAATACCCTCGATGGGTAA
1 TGAAGGGT-AAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTTGATGGGTAA
694628 AAT
65 AAT
694631 GATCTTTATA
Statistics
Matches: 127, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
81 29 0.23
82 65 0.51
83 33 0.26
ACGTcount: A:0.44, C:0.16, G:0.17, T:0.23
Consensus pattern (81 bp):
TGAAGGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGAAATACCCTTGATGGGTAAA
ATTATCAAAATACCAT
Found at i:695042 original size:28 final size:28
Alignment explanation
Indices: 695005--695058 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
694995 ACTGTAATGA
* *
695005 TACTGTATTGGGTTAAGGCCCACACTAC
1 TACTGAATTGGGCTAAGGCCCACACTAC
*
695033 TACTGAATTGGGCTAAGGCCCTCACT
1 TACTGAATTGGGCTAAGGCCCACACT
695059 GTACTGTCAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (28 bp):
TACTGAATTGGGCTAAGGCCCACACTAC
Found at i:702005 original size:15 final size:15
Alignment explanation
Indices: 701973--702006 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
701963 AACTTTCCTT
*
701973 TTTCATTCCATTCCA
1 TTTCATTCCATTCAA
*
701988 TTTCATTCCATTTAA
1 TTTCATTCCATTCAA
702003 TTTC
1 TTTC
702007 TTTTCTTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.26, G:0.00, T:0.53
Consensus pattern (15 bp):
TTTCATTCCATTCAA
Found at i:702028 original size:21 final size:22
Alignment explanation
Indices: 702004--702056 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
701994 TCCATTTAAT
702004 TTCTTTTCTTTTCCTT-TCTTA
1 TTCTTTTCTTTTCCTTCTCTTA
* *
702025 TTCTTTTTTTTTCCTTCTCTTC
1 TTCTTTTCTTTTCCTTCTCTTA
702047 TTCTTATTCT
1 TTCTT-TTCT
702057 ACCTTTATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 15 0.56
22 9 0.33
23 3 0.11
ACGTcount: A:0.04, C:0.25, G:0.00, T:0.72
Consensus pattern (22 bp):
TTCTTTTCTTTTCCTTCTCTTA
Found at i:707768 original size:13 final size:14
Alignment explanation
Indices: 707751--707791 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
707741 ATGGGGGTAG
707751 GATTCTGTATATCT
1 GATTCTGTATATCT
**
707765 -ATTCTACATATCT
1 GATTCTGTATATCT
707778 GATTCTGT-TATCT
1 GATTCTGTATATCT
707791 G
1 G
707792 TATCTGTAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.22, C:0.17, G:0.12, T:0.49
Consensus pattern (14 bp):
GATTCTGTATATCT
Found at i:713097 original size:16 final size:17
Alignment explanation
Indices: 713069--713100 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
713059 GACATTATTT
713069 ATTAAATTAATTTTCTA
1 ATTAAATTAATTTTCTA
713086 ATTAAA-TAATTTTCT
1 ATTAAATTAATTTTCT
713101 CAACTCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTAAATTAATTTTCTA
Found at i:727114 original size:44 final size:44
Alignment explanation
Indices: 727077--727445 Score: 501
Period size: 44 Copynumber: 8.3 Consensus size: 44
727067 AGATCTGAAA
*
727077 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
* * *** *
727121 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTACTT
1 TCTTCGATCTACTTC-ACGCCAGTACATGAAGACAAGATCTGCTT
* *
727166 TCTGCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
*
727210 TCTTCGATCTACTTCACGCCAGTACACGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
* *
727254 TCTTCGATCTACTTCACG-CTGATACATGAAGACAAGATCTACTT
1 TCTTCGATCTACTTCACGCCAG-TACATGAAGACAAGATCTGCTT
*
727298 TCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
1 TCTTCGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
* * ***
727342 T-TTCTGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTG-TT
1 TCTTC-GATCTACTTC-ACGCCAGTACATGAAGACAAGATCTGCTT
727386 ATCTTCGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
1 -TCTTCGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
*
727431 TCTTCGATCTGCTTC
1 TCTTCGATCTACTTC
727446 GCCACCAATA
Statistics
Matches: 281, Mismatches: 36, Indels: 16
0.84 0.11 0.05
Matches are distributed among these distances:
43 4 0.01
44 202 0.72
45 72 0.26
46 3 0.01
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (44 bp):
TCTTCGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
Found at i:727376 original size:177 final size:177
Alignment explanation
Indices: 727077--727445 Score: 519
Period size: 177 Copynumber: 2.1 Consensus size: 177
727067 AGATCTGAAA
* *
727077 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACC
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGACACC
** * *
727142 AGTATGGGAAGACAAGATCTACTTTCTGCGATCTACTTCACGCCAATACATGAAGACAAGATCTG
66 AGTACAGGAAGACAAGATCTACTTTCTGCGATCTACTTCACACCAATACAGGAAGACAAGATCTG
727207 CTT-TCTTCGATCTACTTCACGCCAGTACACGAAGACAAGATCTGCTT
131 -TTATCTTCGATCTACTTCACGCCAGTACACGAAGACAAGATCTGCTT
** * *
727254 TCTTCGATCTACTTCACGCTGATACATGAAGACAAGATCTACTTTCTTTGATCTACTTC-ACGCC
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGACACC
* * * * * **
727318 AGTACATGAAGACAAGATCTGCTTT-TTCTGATCTACTTCGCCACCAGTATGGGAAGACAAGATC
66 AGTACAGGAAGACAAGATCTACTTTCTGC-GATCTACTTC-ACACCAATACAGGAAGACAAGATC
*
727382 TGTTATCTTCGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
129 TGTTATCTTCGATCTACTTCACGCCAGTACACGAAGACAAGATCTGCTT
*
727431 TCTTCGATCTGCTTC
1 TCTTCGATCTACTTC
727446 GCCACCAATA
Statistics
Matches: 170, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
175 2 0.01
176 36 0.21
177 132 0.78
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (177 bp):
TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTACTTTCTTCGATCTACTTCGACACC
AGTACAGGAAGACAAGATCTACTTTCTGCGATCTACTTCACACCAATACAGGAAGACAAGATCTG
TTATCTTCGATCTACTTCACGCCAGTACACGAAGACAAGATCTGCTT
Found at i:727462 original size:89 final size:88
Alignment explanation
Indices: 727077--727455 Score: 483
Period size: 89 Copynumber: 4.3 Consensus size: 88
727067 AGATCTGAAA
* * * *
727077 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACC
1 TCTTCGATCTACTTCACACCAATACAGGAAGACAAGATCTGCTTTCTTCGATCTACTTC-ACGCC
*** *
727142 AGTATGGGAAGACAAGATCTACTT
65 AGTACATGAAGACAAGATCTGCTT
* * *
727166 TCTGCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCA
1 TCTTCGATCTACTTCACACCAATACAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCA
*
727231 GTACACGAAGACAAGATCTGCTT
66 GTACATGAAGACAAGATCTGCTT
* ** * * *
727254 TCTTCGATCTACTTCACGCTGATACATGAAGACAAGATCTACTTTCTTTGATCTACTTCACGCCA
1 TCTTCGATCTACTTCACACCAATACAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCA
727319 GTACATGAAGACAAGATCTGCTT
66 GTACATGAAGACAAGATCTGCTT
* * **
727342 T-TTCTGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTG-TTATCTTCGATCTACTTCACG
1 TCTTC-GATCTACTTC-ACACCAATACAGGAAGACAAGATCTGCTT-TCTTCGATCTACTTCACG
727405 CCAGTACATGAAGACAAGATCTGCTT
63 CCAGTACATGAAGACAAGATCTGCTT
* *
727431 TCTTCGATCTGCTTCGCCACCAATA
1 TCTTCGATCTACTTC-ACACCAATA
727456 TGGGAAGNNN
Statistics
Matches: 261, Mismatches: 25, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
87 3 0.01
88 118 0.45
89 137 0.52
90 3 0.01
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (88 bp):
TCTTCGATCTACTTCACACCAATACAGGAAGACAAGATCTGCTTTCTTCGATCTACTTCACGCCA
GTACATGAAGACAAGATCTGCTT
Found at i:727817 original size:89 final size:89
Alignment explanation
Indices: 727666--727998 Score: 495
Period size: 89 Copynumber: 3.7 Consensus size: 89
727656 NNNNNNNNNN
* * * * *
727666 TACATGAAGACAAGATCTGTTTTCTTCGACCTACTCCACCACCAGTATGGGGAGACAATATCTGT
1 TACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGT
* * *
727731 TGTATTTGATCTACTTCACGCCAA
66 TATCTTTGATCTACTTCACGCCAG
* ** * *
727755 TACATGAAGATAAGATCCATTTTCTTCGATCTACTTCGCCACCGGTATGGGAAGACAATATCTGT
1 TACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGT
*
727820 TATCTTTGATCTACTTCATGCCAG
66 TATCTTTGATCTACTTCACGCCAG
* * * *
727844 TACATGAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCTACCAGTACGGGAAGGCAAGATCTGT
1 TACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGT
727909 TATCTTTGATCTACTTCACGCCAG
66 TATCTTTGATCTACTTCACGCCAG
*
727933 TACATGAAGACAAGATTTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGT
1 TACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGT
727998 T
66 T
727999 GCTACTCCAC
Statistics
Matches: 217, Mismatches: 27, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
89 217 1.00
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (89 bp):
TACATGAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGT
TATCTTTGATCTACTTCACGCCAG
Found at i:727831 original size:45 final size:45
Alignment explanation
Indices: 727671--727998 Score: 293
Period size: 45 Copynumber: 7.4 Consensus size: 45
727661 NNNNNTACAT
* * * *
727671 GAAGACAAGATCTGTTTTCTTCGACCTACTCCACCACCAGTATGG
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTACGG
* * * * * * * * **
727716 GGAGACAATATCTGTTGTATTTGATCTACTTC-ACGCCAATACAT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTACGG
* ** * *
727760 GAAGATAAGATCCATTTTCTTCGATCTACTTCGCCACCGGTATGG
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTACGG
* * * *** **
727805 GAAGACAATATCTGTTATCTTTGATCTACTTC-ATGCCAGTACAT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTACGG
* *
727849 GAAGACAAGATCTGTTTTCTTCGATCTGCTTCGCTACCAGTACGG
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTACGG
* * * * * **
727894 GAAGGCAAGATCTGTTATCTTTGATCTACTTC-ACGCCAGTACAT
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTACGG
* *
727938 GAAGACAAGATTTGTTTTCTTCGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTACGG
727983 GAAGACAAGATCTGTT
1 GAAGACAAGATCTGTT
727999 GCTACTCCAC
Statistics
Matches: 212, Mismatches: 68, Indels: 6
0.74 0.24 0.02
Matches are distributed among these distances:
44 98 0.46
45 114 0.54
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (45 bp):
GAAGACAAGATCTGTTTTCTTCGATCTACTTCGCCACCAGTACGG
Found at i:728172 original size:11 final size:11
Alignment explanation
Indices: 728156--728184 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
728146 TAGACATGTA
728156 TGAATGACATT
1 TGAATGACATT
728167 TGAATGACATT
1 TGAATGACATT
728178 TGAATGA
1 TGAATGA
728185 ATGCTAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.34
Consensus pattern (11 bp):
TGAATGACATT
Found at i:729208 original size:42 final size:42
Alignment explanation
Indices: 729141--729238 Score: 151
Period size: 42 Copynumber: 2.3 Consensus size: 42
729131 CCTTATGCTT
* * *
729141 ATCAGTATTTGAGCTACTCCAATAATCTCATGCCACATTCTG
1 ATCAATATTTGAGCTACTCCAATAATATCATGCCACATTCTA
* *
729183 ATCAATATTTGAGCTACTCCGATAATATCATGCCCCATTCTA
1 ATCAATATTTGAGCTACTCCAATAATATCATGCCACATTCTA
729225 ATCAATATTTGAGC
1 ATCAATATTTGAGC
729239 CGCCCTTTTC
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.34
Consensus pattern (42 bp):
ATCAATATTTGAGCTACTCCAATAATATCATGCCACATTCTA
Found at i:732265 original size:13 final size:13
Alignment explanation
Indices: 732247--732273 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
732237 TAGTTCAATT
732247 CTTCACTAGAAAA
1 CTTCACTAGAAAA
732260 CTTCACTAGAAAA
1 CTTCACTAGAAAA
732273 C
1 C
732274 AAATCTCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.26, G:0.07, T:0.22
Consensus pattern (13 bp):
CTTCACTAGAAAA
Found at i:737880 original size:17 final size:17
Alignment explanation
Indices: 737858--737890 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
737848 ATGAGTAACA
737858 ATAAAAAAATAAAATAC
1 ATAAAAAAATAAAATAC
*
737875 ATAAAAAAATGAAATA
1 ATAAAAAAATAAAATA
737891 ACAAGTAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (17 bp):
ATAAAAAAATAAAATAC
Found at i:739774 original size:15 final size:17
Alignment explanation
Indices: 739735--739788 Score: 60
Period size: 17 Copynumber: 3.3 Consensus size: 17
739725 TTGGTTTAGG
* *
739735 TGGGTATTGGGTTGATAT
1 TGGGTTTTGGGTAGAT-T
739753 T-GGTTTTGGGT-G-TT
1 TGGGTTTTGGGTAGATT
739767 TGGGTTTTGGGTAGATT
1 TGGGTTTTGGGTAGATT
739784 TGGGT
1 TGGGT
739789 ACTGGGCCGG
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.34
16 2 0.06
17 16 0.50
18 1 0.03
ACGTcount: A:0.09, C:0.00, G:0.43, T:0.48
Consensus pattern (17 bp):
TGGGTTTTGGGTAGATT
Found at i:746960 original size:14 final size:15
Alignment explanation
Indices: 746941--746971 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
746931 ATTTTTATAA
746941 TTTTTAAT-ATTTAT
1 TTTTTAATAATTTAT
746955 TTTTTAATAATTTAT
1 TTTTTAATAATTTAT
746970 TT
1 TT
746972 GCTTTAAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (15 bp):
TTTTTAATAATTTAT
Found at i:748009 original size:17 final size:17
Alignment explanation
Indices: 747932--748011 Score: 63
Period size: 17 Copynumber: 4.4 Consensus size: 17
747922 TAAATAACCT
* *
747932 TTTTTTTAATTTTTATA
1 TTTTTTAAATTTTTAAA
747949 TTTTTTAAATTAGTTTACATTA
1 TTTTTTAAATT--TTTA-A--A
*
747971 TTTTTTAAA-TTTAAAA
1 TTTTTTAAATTTTTAAA
*
747987 GGTTTTTAAATTTTTAAA
1 -TTTTTTAAATTTTTAAA
748005 TTTTTTA
1 TTTTTTA
748012 TTGAAAATAC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
16 1 0.02
17 24 0.48
18 7 0.14
19 7 0.14
21 1 0.02
22 10 0.20
ACGTcount: A:0.31, C:0.01, G:0.04, T:0.64
Consensus pattern (17 bp):
TTTTTTAAATTTTTAAA
Found at i:748350 original size:9 final size:8
Alignment explanation
Indices: 748321--748346 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
748311 CTTTCTTTTA
748321 TTAATATT
1 TTAATATT
748329 TTAATATT
1 TTAATATT
748337 TTAATATT
1 TTAATATT
748345 TT
1 TT
748347 TAATTTTCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (8 bp):
TTAATATT
Found at i:749056 original size:11 final size:10
Alignment explanation
Indices: 748992--749066 Score: 51
Period size: 11 Copynumber: 6.7 Consensus size: 10
748982 TTCACTTAAC
748992 TTTCTTTTTT
1 TTTCTTTTTT
* *
749002 ATTATTCTTTT
1 TTTCTT-TTTT
749013 ATTTCTTTCTTT
1 -TTTCTTT-TTT
*
749025 CTTCTTTTTACAT
1 TTTCTTTTT---T
749038 TGTTCTTTTTGT
1 T-TTCTTTTT-T
749050 TTTCTTTTTT
1 TTTCTTTTTT
749060 TTTCTTT
1 TTTCTTT
749067 CCTTTCTTCC
Statistics
Matches: 51, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
10 14 0.27
11 19 0.37
12 9 0.18
13 1 0.02
14 8 0.16
ACGTcount: A:0.07, C:0.13, G:0.03, T:0.77
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:753335 original size:58 final size:58
Alignment explanation
Indices: 753261--753377 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
753251 TAAGATAAAG
753261 AAAGAACCCAAAGTTTAACTTAGTTGGTTTATGCAGTCACTCTTAAGAAGTGGCATTC
1 AAAGAACCCAAAGTTTAACTTAGTTGGTTTATGCAGTCACTCTTAAGAAGTGGCATTC
753319 AAAGAACCCAAAGTTTAACTTAGTTGGTTTATGCAGTCACTCTTAAGAAGTGGCATTC
1 AAAGAACCCAAAGTTTAACTTAGTTGGTTTATGCAGTCACTCTTAAGAAGTGGCATTC
753377 A
1 A
753378 GCAGATTTAG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (58 bp):
AAAGAACCCAAAGTTTAACTTAGTTGGTTTATGCAGTCACTCTTAAGAAGTGGCATTC
Found at i:764652 original size:343 final size:344
Alignment explanation
Indices: 764014--764701 Score: 1369
Period size: 343 Copynumber: 2.0 Consensus size: 344
764004 CTTTCGAATT
764014 AAAAAATAAATAAAACAAAAAAGAAAATAAATCACCTTAAAAATTAGTATCTGATTTCTACCTTT
1 AAAAAATAAATAAAACAAAAAAGAAAATAAATCACCTTAAAAATTAGTATCTGATTTCTACCTTT
764079 CTTGATTGCTTGTTTTATTTATTTATTTTTTCTAAATTACATTGATTGTTGTGGCTTTTATAGTC
66 CTTGATTGCTTGTTTTATTTATTTATTTTTTCTAAATTACATTGATTGTTGTGGCTTTTATAGTC
764144 GATTTACAACATTGTTTACTATTTTGTGTTGTTGTTTCTGTTATTGTTCTGCGTCTGTTGCTAGC
131 GATTTACAACATTGTTTACTATTTTGTGTTGTTGTTTCTGTTATTGTTCTGCGTCTGTTGCTAGC
764209 GCATAATCTCTGTCCGTTTTTTTCTCTTTTCTTGCAAGTGGCGGAGTCAATGGAGGGTGATGGGA
196 GCATAATCTCTGTCCGTTTTTTTCTCTTTTCTTGCAAGTGGCGGAGTCAATGGAGGGTGATGGGA
764274 TGTGCGCCTTTGCCATTTTGGTGCAACGGCGGCAAGGAGGGTGTGTCAGGCCTTGGGACGAGACG
261 TGTGCGCCTTTGCCATTTTGGTGCAACGGCGGCAAGGAGGGTGTGTCAGGCCTTGGGACGAGACG
764339 CCTCGTGTGGCGCGCACGA
326 CCTCGTGTGGCGCGCACGA
764358 AAAAAATAAAT-AAACAAAAAAGAAAATAAATCACCTTAAAAATTAGTATCTGATTTCTACCTTT
1 AAAAAATAAATAAAACAAAAAAGAAAATAAATCACCTTAAAAATTAGTATCTGATTTCTACCTTT
764422 CTTGATTGCTTGTTTTATTTATTTATTTTTTCTAAATTACATTGATTGTTGTGGCTTTTATAGTC
66 CTTGATTGCTTGTTTTATTTATTTATTTTTTCTAAATTACATTGATTGTTGTGGCTTTTATAGTC
764487 GATTTACAACATTGTTTACTATTTTGTGTTGTTGTTTCTGTTATTGTTCTGCGTCTGTTGCTAGC
131 GATTTACAACATTGTTTACTATTTTGTGTTGTTGTTTCTGTTATTGTTCTGCGTCTGTTGCTAGC
764552 GCATAATCTCTGTCCGTTTTTTTCTCTTTTCTTGCAAGTGGCGGAGTCAATGGAGGGTGATGGGA
196 GCATAATCTCTGTCCGTTTTTTTCTCTTTTCTTGCAAGTGGCGGAGTCAATGGAGGGTGATGGGA
764617 TGTGCGCCTTTGCCATTTTGGTGCAACGGCGGCAAGGAGGGTGTGTCAGGCCTTGGGACGAGACG
261 TGTGCGCCTTTGCCATTTTGGTGCAACGGCGGCAAGGAGGGTGTGTCAGGCCTTGGGACGAGACG
764682 CCTCGTGTGGCGCGCACGA
326 CCTCGTGTGGCGCGCACGA
764701 A
1 A
764702 GGGAAGATCG
Statistics
Matches: 344, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
343 333 0.97
344 11 0.03
ACGTcount: A:0.23, C:0.16, G:0.22, T:0.38
Consensus pattern (344 bp):
AAAAAATAAATAAAACAAAAAAGAAAATAAATCACCTTAAAAATTAGTATCTGATTTCTACCTTT
CTTGATTGCTTGTTTTATTTATTTATTTTTTCTAAATTACATTGATTGTTGTGGCTTTTATAGTC
GATTTACAACATTGTTTACTATTTTGTGTTGTTGTTTCTGTTATTGTTCTGCGTCTGTTGCTAGC
GCATAATCTCTGTCCGTTTTTTTCTCTTTTCTTGCAAGTGGCGGAGTCAATGGAGGGTGATGGGA
TGTGCGCCTTTGCCATTTTGGTGCAACGGCGGCAAGGAGGGTGTGTCAGGCCTTGGGACGAGACG
CCTCGTGTGGCGCGCACGA
Found at i:765250 original size:45 final size:45
Alignment explanation
Indices: 765149--765376 Score: 179
Period size: 45 Copynumber: 4.8 Consensus size: 45
765139 AACTAGTAGA
* * * * *
765149 TTTAATCTGTTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTTGTAGC
1 TTTAATTTGTTCCACTGCAACTTCAGGGAAATAAGA--T-TCAC---TATC
* * *
765200 TTTAATTTTTTCCACTGCAACTTTAGAGAAATAAGATTCACTATC
1 TTTAATTTGTTCCACTGCAACTTCAGGGAAATAAGATTCACTATC
* ** * * *
765245 TTTAATTTG-CCCTACAACAACTTCAGGGGAATAAGATTTGTAACTTGTAGC
1 TTTAATTTGTTCC-ACTGCAACTTCAGGGAAATAAGA--T-TCAC---TATC
* * *
765296 TTTAATCTGTTCCACTGAAACTTCAGGGAAATAAGATTCGCTATC
1 TTTAATTTGTTCCACTGCAACTTCAGGGAAATAAGATTCACTATC
765341 TTTAATTTGTTCCACTGCAACTTCAGGGAAATAAGA
1 TTTAATTTGTTCCACTGCAACTTCAGGGAAATAAGA
765377 CCTGTAGCTT
Statistics
Matches: 143, Mismatches: 26, Indels: 22
0.75 0.14 0.12
Matches are distributed among these distances:
44 2 0.01
45 66 0.46
47 1 0.01
48 8 0.06
49 2 0.01
51 62 0.43
52 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (45 bp):
TTTAATTTGTTCCACTGCAACTTCAGGGAAATAAGATTCACTATC
Found at i:765287 original size:96 final size:96
Alignment explanation
Indices: 765166--765376 Score: 291
Period size: 96 Copynumber: 2.2 Consensus size: 96
765156 TGTTCCACTG
* * * * *
765166 CAACTTCA-GAGAGATAAGATTTGTAACTTGTAGCTTTAATTTTTTCCACTGCAACTTTAGAGAA
1 CAACTTCAGGGGA-ATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGAAACTTCAGAGAA
765230 ATAAGATTCACTATCTTTAATTTG-CCCTACAA
65 ATAAGATTCACTATCTTTAATTTGTCCC-ACAA
*
765262 CAACTTCAGGGGAATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGAAACTTCAGGGAAA
1 CAACTTCAGGGGAATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGAAACTTCAGAGAAA
* * **
765327 TAAGATTCGCTATCTTTAATTTGTTCCACTG
66 TAAGATTCACTATCTTTAATTTGTCCCACAA
*
765358 CAACTTCAGGGAAATAAGA
1 CAACTTCAGGGGAATAAGA
765377 CCTGTAGCTT
Statistics
Matches: 102, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
96 97 0.95
97 5 0.05
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.34
Consensus pattern (96 bp):
CAACTTCAGGGGAATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGAAACTTCAGAGAAA
TAAGATTCACTATCTTTAATTTGTCCCACAA
Found at i:765321 original size:51 final size:51
Alignment explanation
Indices: 765093--765673 Score: 234
Period size: 51 Copynumber: 11.8 Consensus size: 51
765083 AATAAGATTA
* * * * *
765093 GTAGCTTCAATCTGCTCCACT-ACAACTTTC-GAGAGATAAGATTTGTAACTA
1 GTAGCTTTAATCTGTTCCACTGA-AAC-TTCAGGGAAATAAGATTTGTAACTT
* * * *
765144 GTAGATTTAATCTGTTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTT
1 GTAGCTTTAATCTGTTCCACTGAAACTTCAGGGAAATAAGATTTGTAACTT
* * * * * *
765195 GTAGCTTTAATTTTTTCCACTGCAACTTTAGAGAAATAAGA--T-TCAC--
1 GTAGCTTTAATCTGTTCCACTGAAACTTCAGGGAAATAAGATTTGTAACTT
* * * * *
765241 -TATCTTTAATTTG-CCCTAC-AACAACTTCAGGGGAATAAGATTTGTAACTT
1 GTAGCTTTAATCTGTTCC-ACTGA-AACTTCAGGGAAATAAGATTTGTAACTT
*
765291 GTAGCTTTAATCTGTTCCACTGAAACTTCAGGGAAATAAGATTCG---C--
1 GTAGCTTTAATCTGTTCCACTGAAACTTCAGGGAAATAAGATTTGTAACTT
* * * *
765337 -TATCTTTAATTTGTTCCACTGCAACTTCAGGGAAAT-A-A---G--ACCT
1 GTAGCTTTAATCTGTTCCACTGAAACTTCAGGGAAATAAGATTTGTAACTT
* ** * *
765380 GTAGCTTTAATATACTCCACTGCAACTTCA-AGAAGATAAGA----T---TT
1 GTAGCTTTAATCTGTTCCACTGAAACTTCAGGGAA-ATAAGATTTGTAACTT
* ** * * * * *
765424 GTAGCTTCAATCTACTCTACCGCAACTTCAAGGAGATAAGATTTG-----T
1 GTAGCTTTAATCTGTTCCACTGAAACTTCAGGGAAATAAGATTTGTAACTT
* *
765470 G--GCTTTAATCTGCTCCACTGTAACTTCAAGGG-AATAAGATTTGTAACTT
1 GTAGCTTTAATCTGTTCCACTGAAACTTC-AGGGAAATAAGATTTGTAACTT
** * * * ** *
765519 ACAGCTTTAATCTATTCCACTGCAACTTCAGAGAAATAAGATAAGGGAAATAAGATTT
1 GTAGCTTTAATCTGTTCCACTGAAACTTCAGGGAAATAAGAT--TTG---T-A-ACTT
* * ** *
765577 ACTATCTTTAATC-GGCCCACTGTAACTTCAGGGAAATAAGATTTGTAATAACTT
1 -GTAGCTTTAATCTGTTCCACTGAAACTTCAGGGAAATAAGATTTG---TAACTT
* *
765631 GTAGCTTTAATCTGTTCCACTGCAACTTTAGGGAAATAAGATT
1 GTAGCTTTAATCTGTTCCACTGAAACTTCAGGGAAATAAGATT
765674 CGCTATCTTT
Statistics
Matches: 413, Mismatches: 74, Indels: 83
0.72 0.13 0.15
Matches are distributed among these distances:
40 1 0.00
41 1 0.00
43 4 0.01
44 94 0.23
45 67 0.16
46 3 0.01
47 1 0.00
48 7 0.02
49 2 0.00
50 6 0.01
51 141 0.34
52 3 0.01
53 11 0.03
54 29 0.07
55 1 0.00
56 5 0.01
57 1 0.00
58 27 0.07
59 9 0.02
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Consensus pattern (51 bp):
GTAGCTTTAATCTGTTCCACTGAAACTTCAGGGAAATAAGATTTGTAACTT
Found at i:765403 original size:44 final size:44
Alignment explanation
Indices: 765289--765808 Score: 299
Period size: 44 Copynumber: 11.1 Consensus size: 44
765279 GATTTGTAAC
* *
765289 TTGTAGCTTTAATCTGTTCCACTGAAACTTCAGGGAAATAAGAT
1 TTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGAT
* * * * *
765333 TCGCTATCTTTAATTTGTTCCACTGCAACTTCAGGGAAATAAGAC
1 TTG-TAGCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGAT
* * * *
765378 CTGTAGCTTTAATATACTCCACTGCAACTTCA-AGAAGATAAGAT
1 TTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAA-ATAAGAT
* * * * * *
765422 TTGTAGCTTCAATCTACTCTACCGCAACTTCAAGGAGATAAGAT
1 TTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGAT
* *
765466 TTGTGGCTTTAATCTGCTCCACTGTAACTTCAAGGG-AATAAGAT
1 TTGTAGCTTTAATCTGCTCCACTGCAACTTC-AGGGAAATAAGAT
** *
765510 TTGTAACTTACAGCTTTAATCTATTCCACTGCAACTTCAGAGAAATAAGAT
1 TTG-----T--AGCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGAT
** * *
765561 AAGGGAAATAAGATTTACTATCTTTAATCGGC-CCACTGTAACTTCAGGGAAATAAGATTTGTAA
1 --TTG---T-AGCTTTA--ATC-----T--GCTCCACTGCAACTTCAGGGAAAT-A-A---G--A
765625 T
44 T
* *
765626 AACTTGTAGCTTTAATCTGTTCCACTGCAACTTTAGGGAAATAAGAT
1 ---TTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGAT
* * * * * *
765673 TCGCTATCTTTAATCTGCCCCACTGTAACTTCAGGGAGATAAGAC
1 TTG-TAGCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGAT
* * * *
765718 TTGTAGCTTCAATCTACTCCACTGTAACTTCAGGGAGATAAGAT
1 TTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGAT
* * * * * *
765762 TTGTGGTTTTAATCTACTCCATTGCAAATTCAGGGAGATAAGAT
1 TTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGAT
765806 TTG
1 TTG
765809 CCACGATGAC
Statistics
Matches: 373, Mismatches: 70, Indels: 66
0.73 0.14 0.13
Matches are distributed among these distances:
43 3 0.01
44 181 0.49
45 79 0.21
47 2 0.01
49 2 0.01
50 9 0.02
51 33 0.09
52 4 0.01
53 3 0.01
54 19 0.05
55 1 0.00
57 1 0.00
58 19 0.05
59 1 0.00
60 4 0.01
62 6 0.02
63 2 0.01
65 2 0.01
66 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.33
Consensus pattern (44 bp):
TTGTAGCTTTAATCTGCTCCACTGCAACTTCAGGGAAATAAGAT
Found at i:765668 original size:112 final size:110
Alignment explanation
Indices: 765472--765672 Score: 298
Period size: 112 Copynumber: 1.8 Consensus size: 110
765462 AGATTTGTGG
*
765472 CTTTAATCTGCTCCACTGTAACTTCAAGGGAATAAGATTTGTAACTTACAGCTTTAATCTATTCC
1 CTTTAATCGGCTCCACTGTAACTTCAAGGGAATAAGATTTGTAACTTACAGCTTTAATCTATTCC
765537 ACTGCAACTTCAGAGAAATAAGATAAGGGAAATAAGATTTACTAT
66 ACTGCAACTTCAGAGAAATAAGATAAGGGAAATAAGATTTACTAT
** *
765582 CTTTAATCGGC-CCACTGTAACTTC-AGGGAAATAAGATTTGTAATAACTTGTAGCTTTAATCTG
1 CTTTAATCGGCTCCACTGTAACTTCAAGGG-AATAAGATTTG---TAACTTACAGCTTTAATCTA
* *
765645 TTCCACTGCAACTTTAGGGAAATAAGAT
62 TTCCACTGCAACTTCAGAGAAATAAGAT
765673 TCGCTATCTT
Statistics
Matches: 81, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
108 4 0.05
109 24 0.30
110 10 0.12
112 43 0.53
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.32
Consensus pattern (110 bp):
CTTTAATCGGCTCCACTGTAACTTCAAGGGAATAAGATTTGTAACTTACAGCTTTAATCTATTCC
ACTGCAACTTCAGAGAAATAAGATAAGGGAAATAAGATTTACTAT
Found at i:774326 original size:25 final size:26
Alignment explanation
Indices: 774298--774366 Score: 81
Period size: 25 Copynumber: 2.7 Consensus size: 26
774288 CGGACTCACC
774298 ACAGCTCGTATGAGCTTA-TCGATT-T
1 ACAGCTCGTATGAGCTTACT-GATTCT
*
774323 ACAGCTCGTAAGAGCTTACTGATTCT
1 ACAGCTCGTATGAGCTTACTGATTCT
* *
774349 -CAGCTCTTATAAGCTTAC
1 ACAGCTCGTATGAGCTTAC
774367 CGTTATTTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
25 36 0.95
26 2 0.05
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.33
Consensus pattern (26 bp):
ACAGCTCGTATGAGCTTACTGATTCT
Found at i:775706 original size:10 final size:10
Alignment explanation
Indices: 775692--775731 Score: 62
Period size: 10 Copynumber: 4.0 Consensus size: 10
775682 ACTAGGGACT
**
775692 TTATGATTAT
1 TTATGATTGG
775702 TTATGATTGG
1 TTATGATTGG
775712 TTATGATTGG
1 TTATGATTGG
775722 TTATGATTGG
1 TTATGATTGG
775732 AATATGATAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.23, C:0.00, G:0.25, T:0.53
Consensus pattern (10 bp):
TTATGATTGG
Found at i:776518 original size:19 final size:20
Alignment explanation
Indices: 776494--776531 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
776484 TTATAAAACT
*
776494 TAATGCATATG-ATGAAATA
1 TAATGCAGATGAATGAAATA
776513 TAATGCAGATGAATGAAAT
1 TAATGCAGATGAATGAAAT
776532 GAATGCAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.47, C:0.05, G:0.18, T:0.29
Consensus pattern (20 bp):
TAATGCAGATGAATGAAATA
Found at i:776536 original size:19 final size:19
Alignment explanation
Indices: 776495--776538 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
776485 TATAAAACTT
* *
776495 AATGCATATGATGAAATAT
1 AATGCAGATGATGAAATAG
776514 AATGCAGATGAATGAAAT-G
1 AATGCAGATG-ATGAAATAG
776533 AATGCA
1 AATGCA
776539 AAAAGAGGCA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.48, C:0.07, G:0.20, T:0.25
Consensus pattern (19 bp):
AATGCAGATGATGAAATAG
Found at i:778510 original size:16 final size:15
Alignment explanation
Indices: 778470--778515 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 15
778460 TTTTATGAAC
778470 TTTTTAT-ATTTTTT
1 TTTTTATAATTTTTT
778484 TTAATTT-TAATTTTTT
1 TT--TTTATAATTTTTT
778500 ATTTTTATAATTTTTT
1 -TTTTTATAATTTTTT
778516 GAACTACTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
14 2 0.07
15 4 0.15
16 19 0.70
17 2 0.07
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTTTATAATTTTTT
Found at i:778978 original size:22 final size:24
Alignment explanation
Indices: 778953--779013 Score: 76
Period size: 22 Copynumber: 2.7 Consensus size: 24
778943 GCCCGACCCG
*
778953 TTTTTAATTAAAATTAAAA-TTAT
1 TTTTTAATTAAAATTAAAACTAAT
778976 TTTTTAA-TAAAATTAAAACTAA-
1 TTTTTAATTAAAATTAAAACTAAT
*
778998 TTGTT-ATTAAAATTAA
1 TTTTTAATTAAAATTAA
779014 TTGTTAGTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
21 1 0.03
22 24 0.71
23 9 0.26
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (24 bp):
TTTTTAATTAAAATTAAAACTAAT
Found at i:779026 original size:16 final size:16
Alignment explanation
Indices: 778989--779028 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
778979 TTAATAAAAT
* *
778989 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
779005 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
779021 TAAAATTA
1 TAAAATTA
779029 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:779087 original size:66 final size:67
Alignment explanation
Indices: 779017--779159 Score: 252
Period size: 68 Copynumber: 2.1 Consensus size: 67
779007 AAATTAATTG
*
779017 TTAGTAAAATTATCAAATTATTAATTG-TTAATTGTATTAATTGTTGTAATAAAATCTAACATTT
1 TTAGTAAAATTATCAAATTATTAATTGATTAATTGTATTAATTGTTGTAACAAAATCTAACATTT
779081 GA
66 GA
*
779083 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAACAAAATCTAACATT
1 TTAGTAAAATTATCAAATTATTAATTG-ATTAATTGTATTAATTGTTGTAACAAAATCTAACATT
779148 TGA
65 TGA
779151 TTAGTAAAA
1 TTAGTAAAA
779160 CAAACTTGAT
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
66 26 0.36
68 46 0.64
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.45
Consensus pattern (67 bp):
TTAGTAAAATTATCAAATTATTAATTGATTAATTGTATTAATTGTTGTAACAAAATCTAACATTT
GA
Found at i:779113 original size:9 final size:9
Alignment explanation
Indices: 779101--779128 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
779091 TTTATCAAAT
779101 TATTAATTG
1 TATTAATTG
779110 TATTAATTG
1 TATTAATTG
779119 TATTAATTG
1 TATTAATTG
779128 T
1 T
779129 TGTAACAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:779254 original size:24 final size:23
Alignment explanation
Indices: 779225--779269 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
779215 AAATAAACTT
*
779225 AAAATAAAAAACTATTATATTTTA
1 AAAATAAAAAAATA-TATATTTTA
779249 AAAATAAAAAAATATATATTT
1 AAAATAAAAAAATATATATTT
779270 AATATTTTCG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (23 bp):
AAAATAAAAAAATATATATTTTA
Found at i:785589 original size:19 final size:21
Alignment explanation
Indices: 785554--785593 Score: 66
Period size: 19 Copynumber: 2.0 Consensus size: 21
785544 GTATTGCTTT
785554 TTATTTTTAATATTAATATAA
1 TTATTTTTAATATTAATATAA
785575 TTATTTTT-A-ATTAATATAA
1 TTATTTTTAATATTAATATAA
785594 ATATAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 10 0.53
20 1 0.05
21 8 0.42
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TTATTTTTAATATTAATATAA
Found at i:785610 original size:6 final size:6
Alignment explanation
Indices: 785587--785612 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
785577 ATTTTTAATT
785587 AATATA AATATA AATATA AATATA AA
1 AATATA AATATA AATATA AATATA AA
785613 ATTAGAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (6 bp):
AATATA
Found at i:794884 original size:11 final size:11
Alignment explanation
Indices: 794870--794899 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
794860 TTATCAGAAG
794870 TTTCAAAAATC
1 TTTCAAAAATC
*
794881 TTTCAATAATC
1 TTTCAAAAATC
794892 TTTCAAAA
1 TTTCAAAA
794900 GTTTTAGTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (11 bp):
TTTCAAAAATC
Found at i:799164 original size:28 final size:26
Alignment explanation
Indices: 799106--799175 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 26
799096 GAGCGAGCCC
* *
799106 CTATGTGCGAACCCTATAGACAGACC
1 CTATGTGCGAACCCTATAGACAAACA
* *
799132 CTATGTGTGAACCTTATAGAAACAAACA
1 CTATGTGCGAACCCTATAG--ACAAACA
* *
799160 CTATGCGCAAACCCTA
1 CTATGTGCGAACCCTA
799176 CTTGTGCGAA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
26 17 0.50
28 17 0.50
ACGTcount: A:0.36, C:0.27, G:0.16, T:0.21
Consensus pattern (26 bp):
CTATGTGCGAACCCTATAGACAAACA
Found at i:800625 original size:18 final size:19
Alignment explanation
Indices: 800598--800633 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
800588 AAATATTATA
800598 TTTAAATTT-ATTTTTAAT
1 TTTAAATTTAATTTTTAAT
*
800616 TTTAATTTTAATTTTTAA
1 TTTAAATTTAATTTTTAA
800634 AAATATTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (19 bp):
TTTAAATTTAATTTTTAAT
Found at i:803433 original size:21 final size:21
Alignment explanation
Indices: 803386--803428 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 21
803376 TATGTAATAT
803386 AACATATAATATATAATAAGTA
1 AACATATAATATATAATAAG-A
803408 AACATATATATATATATATAA
1 AACATATA-ATATATA-ATAA
803429 AACATCATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 8 0.42
23 7 0.37
24 4 0.21
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (21 bp):
AACATATAATATATAATAAGA
Found at i:804640 original size:8 final size:8
Alignment explanation
Indices: 804627--804676 Score: 50
Period size: 8 Copynumber: 6.1 Consensus size: 8
804617 ATAATAAGAG
804627 AAATAATA
1 AAATAATA
804635 AAATAATA
1 AAATAATA
*
804643 AGAACACACTA
1 A-AATA-A-TA
804654 AAA-AATA
1 AAATAATA
804661 AAA-AATA
1 AAATAATA
804668 AAATAATA
1 AAATAATA
804676 A
1 A
804677 TGACAATAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
7 12 0.32
8 15 0.41
9 4 0.11
10 3 0.08
11 3 0.08
ACGTcount: A:0.74, C:0.06, G:0.02, T:0.18
Consensus pattern (8 bp):
AAATAATA
Found at i:804669 original size:33 final size:31
Alignment explanation
Indices: 804631--804696 Score: 89
Period size: 33 Copynumber: 2.1 Consensus size: 31
804621 TAAGAGAAAT
804631 AATAAAATAATAA-GAACACACTAAAAAATAAAA
1 AATAAAATAATAATG-ACA-A-TAAAAAATAAAA
*
804664 AATAAAATAATAATGACAATAATAAATAAAA
1 AATAAAATAATAATGACAATAAAAAATAAAA
804695 AA
1 AA
804697 AATGCACCAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
31 13 0.42
32 1 0.03
33 16 0.52
34 1 0.03
ACGTcount: A:0.73, C:0.06, G:0.03, T:0.18
Consensus pattern (31 bp):
AATAAAATAATAATGACAATAAAAAATAAAA
Found at i:804707 original size:24 final size:24
Alignment explanation
Indices: 804657--804712 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 24
804647 CACACTAAAA
804657 AATAAAAAATAAAATAATAATGAC
1 AATAAAAAATAAAATAATAATGAC
*
804681 AATAATAAATAAAA-AA-AATGCACC
1 AATAAAAAATAAAATAATAATG-A-C
804705 AATAAAAA
1 AATAAAAA
804713 GCATATACAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 4 0.14
23 3 0.11
24 21 0.75
ACGTcount: A:0.71, C:0.07, G:0.04, T:0.18
Consensus pattern (24 bp):
AATAAAAAATAAAATAATAATGAC
Found at i:804882 original size:8 final size:8
Alignment explanation
Indices: 804869--805134 Score: 111
Period size: 8 Copynumber: 32.8 Consensus size: 8
804859 ATGAAGGAAT
804869 AATAAATA
1 AATAAATA
804877 AATAAATA
1 AATAAATA
**
804885 AACGAATA
1 AATAAATA
804893 AA-AGAATTAA
1 AATA-AA-T-A
804903 AATAAA-A
1 AATAAATA
804910 AAGTAAATA
1 AA-TAAATA
* *
804919 AGTGAAT-
1 AATAAATA
*
804926 AATATATA
1 AATAAATA
804934 AATAAATA
1 AATAAATA
* *
804942 AGTAAATG
1 AATAAATA
*
804950 AGTAAATA
1 AATAAATA
*
804958 AATGAATAA
1 AATAAAT-A
804967 AATAAA-A
1 AATAAATA
*
804974 GGAAT-AATG
1 --AATAAATA
804983 AATAAATA
1 AATAAATA
*
804991 AATAAGTA
1 AATAAATA
* *
804999 AATAGATG
1 AATAAATA
805007 AATAAA-A
1 AATAAATA
805014 GAATTAAATTAA
1 -AA-TAAA-T-A
805026 AATAAA-A
1 AATAAATA
*
805033 AGTAAATA
1 AATAAATA
* *
805041 AGTGAAT-
1 AATAAATA
*
805048 AATATATA
1 AATAAATA
805056 AATAAATA
1 AATAAATA
* *
805064 AGTAAATG
1 AATAAATA
*
805072 AGTAAATA
1 AATAAATA
*
805080 AATGAATAA
1 AATAAAT-A
805089 AATAAA-A
1 AATAAATA
*
805096 GGAAT-AATG
1 --AATAAATA
805105 AATAAATA
1 AATAAATA
*
805113 AATAAGTA
1 AATAAATA
* *
805121 AATAGATG
1 AATAAATA
805129 AATAAA
1 AATAAA
805135 AGAATTAAAA
Statistics
Matches: 192, Mismatches: 42, Indels: 48
0.68 0.15 0.17
Matches are distributed among these distances:
7 25 0.13
8 129 0.67
9 25 0.13
10 9 0.05
11 3 0.02
12 1 0.01
ACGTcount: A:0.65, C:0.00, G:0.11, T:0.24
Consensus pattern (8 bp):
AATAAATA
Found at i:804981 original size:53 final size:54
Alignment explanation
Indices: 804922--805027 Score: 146
Period size: 53 Copynumber: 2.0 Consensus size: 54
804912 GTAAATAAGT
*
804922 GAATAAT-ATATAAATAAATAAGTAAAT-GAGTAAATAAATGAA-TAAAATAAAAG
1 GAATAATGA-ATAAATAAATAAGTAAATAGA-TAAATAAAAGAATTAAAATAAAAG
* *
804975 GAATAATGAATAAATAAATAAGTAAATAGATGAATAAAAGAATTAAATTAAAA
1 GAATAATGAATAAATAAATAAGTAAATAGATAAATAAAAGAATTAAAATAAAA
805028 TAAAAAGTAA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
53 35 0.74
54 12 0.26
ACGTcount: A:0.64, C:0.00, G:0.11, T:0.25
Consensus pattern (54 bp):
GAATAATGAATAAATAAATAAGTAAATAGATAAATAAAAGAATTAAAATAAAAG
Found at i:805051 original size:122 final size:120
Alignment explanation
Indices: 804865--805151 Score: 490
Period size: 122 Copynumber: 2.4 Consensus size: 120
804855 AAAAATGAAG
* * * *
804865 GAAT-AATAAATAAATAAATAAACGAATAAAAGAATT-AA-AATAAAAAAGTAAATAAGTGAATA
1 GAATAAATAAATAAGTAAATAGATGAATAAAAGAATTAAATAAAAAAAAAGTAAATAAGTGAATA
804927 ATATATAAATAAATAAGTAAATGAGTAAATAAATGAATAAAATAAAAGGAATAAT
66 ATATATAAATAAATAAGTAAATGAGTAAATAAATGAATAAAATAAAAGGAATAAT
804982 GAATAAATAAATAAGTAAATAGATGAATAAAAGAATTAAATTAAAATAAAAAGTAAATAAGTGAA
1 GAATAAATAAATAAGTAAATAGATGAATAAAAGAATTAAA-TAAAA-AAAAAGTAAATAAGTGAA
805047 TAATATATAAATAAATAAGTAAATGAGTAAATAAATGAATAAAATAAAAGGAATAAT
64 TAATATATAAATAAATAAGTAAATGAGTAAATAAATGAATAAAATAAAAGGAATAAT
805104 GAATAAATAAATAAGTAAATAGATGAATAAAAGAATTAAAATAAAAAA
1 GAATAAATAAATAAGTAAATAGATGAATAAAAGAATT-AAATAAAAAA
805152 GGACTTAATT
Statistics
Matches: 160, Mismatches: 4, Indels: 8
0.93 0.02 0.05
Matches are distributed among these distances:
117 4 0.03
118 29 0.18
119 2 0.01
121 5 0.03
122 117 0.73
123 3 0.02
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.23
Consensus pattern (120 bp):
GAATAAATAAATAAGTAAATAGATGAATAAAAGAATTAAATAAAAAAAAAGTAAATAAGTGAATA
ATATATAAATAAATAAGTAAATGAGTAAATAAATGAATAAAATAAAAGGAATAAT
Found at i:805103 original size:53 final size:54
Alignment explanation
Indices: 805044--805149 Score: 155
Period size: 53 Copynumber: 2.0 Consensus size: 54
805034 GTAAATAAGT
*
805044 GAATAAT-ATATAAATAAATAAGTAAAT-GAGTAAATAAATGAA-TAAAATAAAAG
1 GAATAATGA-ATAAATAAATAAGTAAATAGA-TAAATAAAAGAATTAAAATAAAAG
*
805097 GAATAATGAATAAATAAATAAGTAAATAGATGAATAAAAGAATTAAAATAAAA
1 GAATAATGAATAAATAAATAAGTAAATAGATAAATAAAAGAATTAAAATAAAA
805150 AAGGACTTAA
Statistics
Matches: 48, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
53 35 0.73
54 13 0.27
ACGTcount: A:0.65, C:0.00, G:0.11, T:0.24
Consensus pattern (54 bp):
GAATAATGAATAAATAAATAAGTAAATAGATAAATAAAAGAATTAAAATAAAAG
Found at i:805147 original size:45 final size:44
Alignment explanation
Indices: 804938--805138 Score: 174
Period size: 45 Copynumber: 4.8 Consensus size: 44
804928 TATATAAATA
* * *
804938 AATAAGTAAATGAGTAAATAAATGAATAAAATAAAAGGAATAATG
1 AATAAATAAATAAGTAAATAAATGAATAAAAGAAAA-GAATAATG
* *
804983 AATAAATAAATAAGTAAATAGATGAATAAAAGAATTA-AAT--T-
1 AATAAATAAATAAGTAAATAAATGAATAAAAGAA-AAGAATAATG
* * * *
805024 -A-AAATAAA-AAGTAAATAAGTGAATAATA-TATA-AAT-A--
1 AATAAATAAATAAGTAAATAAATGAATAAAAGAAAAGAATAATG
* * *
805060 AATAAGTAAATGAGTAAATAAATGAATAAAATAAAAGGAATAATG
1 AATAAATAAATAAGTAAATAAATGAATAAAAGAAAA-GAATAATG
*
805105 AATAAATAAATAAGTAAATAGATGAATAAAAGAA
1 AATAAATAAATAAGTAAATAAATGAATAAAAGAA
805139 TTAAAATAAA
Statistics
Matches: 126, Mismatches: 19, Indels: 22
0.75 0.11 0.13
Matches are distributed among these distances:
36 5 0.04
37 2 0.02
38 23 0.18
39 24 0.19
40 3 0.02
42 4 0.03
43 1 0.01
44 3 0.02
45 60 0.48
46 1 0.01
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.23
Consensus pattern (44 bp):
AATAAATAAATAAGTAAATAAATGAATAAAAGAAAAGAATAATG
Found at i:805211 original size:122 final size:117
Alignment explanation
Indices: 804865--805190 Score: 408
Period size: 122 Copynumber: 2.7 Consensus size: 117
804855 AAAAATGAAG
* * * * *
804865 GAAT-AATAAATAAATAAATAAACGAATAAAAGAATTAAAATAAAAAAGTAAA-TAAGTGAATAA
1 GAATAAATAAATAAGTAAATAGATGAATAAAAGAATTAAAATAAAAAAG-AAATTAATTGTA-AA
*
804928 TATATAAATAAATAAGTAAATGAGTAAATAAATGAATAAAATAAAAGGAATAAT
64 TAAATAAATAAATAAGTAAATGAGTAAATAAATGAATAAAATAAAAGGAATAAT
* * *
804982 GAATAAATAAATAAGTAAATAGATGAATAAAAGAATTAAATTAAAATAA-AAAGTAAATAAGTGA
1 GAATAAATAAATAAGTAAATAGATGAATAAAAGAATTAAAATAAAA-AAGAAA-T---TAATTGT
*
805046 ATAATATATAAATAAATAAGTAAATGAGTAAATAAATGAATAAAATAAAAGGAATAAT
61 A-AATAAATAAATAAATAAGTAAATGAGTAAATAAATGAATAAAATAAAAGGAATAAT
* *
805104 GAATAAATAAATAAGTAAATAGATGAATAAAAGAATTAAAATAAAAAAGGACTTAATTGTAACAT
1 GAATAAATAAATAAGTAAATAGATGAATAAAAGAATTAAAATAAAAAAGAAATTAATTGTAA-AT
805169 AAATGAAATTAAA-AAGATAAAT
65 AAAT-AAA-TAAATAAG-TAAAT
805191 CAGGATAAAA
Statistics
Matches: 187, Mismatches: 10, Indels: 21
0.86 0.05 0.10
Matches are distributed among these distances:
117 8 0.04
118 48 0.26
119 8 0.04
120 9 0.05
121 3 0.02
122 111 0.59
ACGTcount: A:0.64, C:0.01, G:0.11, T:0.24
Consensus pattern (117 bp):
GAATAAATAAATAAGTAAATAGATGAATAAAAGAATTAAAATAAAAAAGAAATTAATTGTAAATA
AATAAATAAATAAGTAAATGAGTAAATAAATGAATAAAATAAAAGGAATAAT
Found at i:805996 original size:14 final size:13
Alignment explanation
Indices: 805960--806000 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
805950 TCGAAAATGC
805960 TTGTATTC-TTTT
1 TTGTATTCTTTTT
805972 TTG-ATTACTTTTT
1 TTGTATT-CTTTTT
805985 TTGTATATCTTTTT
1 TTGTAT-TCTTTTT
805999 TT
1 TT
806001 TCTATTCGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
11 3 0.12
12 4 0.16
13 7 0.28
14 10 0.40
15 1 0.04
ACGTcount: A:0.12, C:0.07, G:0.07, T:0.73
Consensus pattern (13 bp):
TTGTATTCTTTTT
Found at i:812409 original size:70 final size:68
Alignment explanation
Indices: 812294--812426 Score: 205
Period size: 70 Copynumber: 1.9 Consensus size: 68
812284 NNNNNNNCTG
* * *
812294 ATCAAGTACAAAGTGATAAGTGGTAGCTTTAGGTACACTTATCTGATCACGTGACAAAGTGATAA
1 ATCAAGTACAAAGTGATAAGTGGTAGCTCTAGCTACACTTATCTGATCA-GGGAC-AAGTGATAA
812359 ATGTA
64 ATGTA
812364 ATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTATCTGATCAGGGACAAGTGATAA
1 ATCAAGT-ACAAAGTGATAAGTGGTAGCTCTAGCTACACTTATCTGATCAGGGACAAGTGATAA
812427 GTGATCATAC
Statistics
Matches: 59, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
68 9 0.15
69 4 0.07
70 26 0.44
71 20 0.34
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (68 bp):
ATCAAGTACAAAGTGATAAGTGGTAGCTCTAGCTACACTTATCTGATCAGGGACAAGTGATAAAT
GTA
Found at i:817342 original size:14 final size:15
Alignment explanation
Indices: 817323--817367 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 15
817313 TTTAAAAATA
817323 TATAATATT-TATTG
1 TATAATATTATATTG
817337 TATAAT-TTATATTG
1 TATAATATTATATTG
817351 TA-AATATATATAATTG
1 TATAATAT-TAT-ATTG
817367 T
1 T
817368 GATTTAAACA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 5 0.19
14 14 0.52
15 3 0.11
16 5 0.19
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (15 bp):
TATAATATTATATTG
Found at i:817526 original size:62 final size:62
Alignment explanation
Indices: 817460--817663 Score: 180
Period size: 62 Copynumber: 3.1 Consensus size: 62
817450 ACATTTAAAA
817460 ATAATTATAATATTTAATTTAGAATTATTAATTAAAAAAGTTGACATAAAATAGAATTTGTG
1 ATAATTATAATATTTAATTTAGAATTATTAATTAAAAAAGTTGACATAAAATAGAATTTGTG
** ** * * * *
817522 ATAATTAT-ACGTTTAA-CAATAATTA-TAATTCAATAGAAATTTTGATAATTACACATTTAAAG
1 ATAATTATAATATTTAATTTAGAATTATTAATT-AA-A-AAA-GTTGA-CA-TA-A-A---ATAG
***
817584 ACATTTAAA
55 A-ATTTGTG
817593 ATAATTATAATATTTAATTTAGAATTATTAATTAAAAAAGTTGACATAAAATAGAATTTGTG
1 ATAATTATAATATTTAATTTAGAATTATTAATTAAAAAAGTTGACATAAAATAGAATTTGTG
817655 ATAATTATA
1 ATAATTATA
817664 CGTTTAACAA
Statistics
Matches: 105, Mismatches: 22, Indels: 30
0.67 0.14 0.19
Matches are distributed among these distances:
59 5 0.05
60 8 0.08
61 7 0.07
62 24 0.23
63 8 0.08
64 1 0.01
65 2 0.02
66 2 0.02
67 2 0.02
68 2 0.02
69 1 0.01
70 8 0.08
71 15 0.14
72 7 0.07
73 8 0.08
74 5 0.05
ACGTcount: A:0.49, C:0.04, G:0.08, T:0.40
Consensus pattern (62 bp):
ATAATTATAATATTTAATTTAGAATTATTAATTAAAAAAGTTGACATAAAATAGAATTTGTG
Found at i:817605 original size:133 final size:134
Alignment explanation
Indices: 817449--817715 Score: 527
Period size: 133 Copynumber: 2.0 Consensus size: 134
817439 TCACTAAATT
817449 GACATTTAAAAATAATTATAATATTTAATTTAGAATTATTAATTAAAAAAGTTGACATAAAATAG
1 GACATTTAAAAATAATTATAATATTTAATTTAGAATTATTAATTAAAAAAGTTGACATAAAATAG
817514 AATTTGTGATAATTATACGTTTAACAATAATTATAATTCAATAGAAATTTTGATAATTACACATT
66 AATTTGTGATAATTATACGTTTAACAATAATTATAATTCAATAGAAATTTTGATAATTACACATT
817579 TAAA
131 TAAA
817583 GACATTT-AAAATAATTATAATATTTAATTTAGAATTATTAATTAAAAAAGTTGACATAAAATAG
1 GACATTTAAAAATAATTATAATATTTAATTTAGAATTATTAATTAAAAAAGTTGACATAAAATAG
817647 AATTTGTGATAATTATACGTTTAACAATAATTATAATTCAATAGAAATTTTGATAATTACACATT
66 AATTTGTGATAATTATACGTTTAACAATAATTATAATTCAATAGAAATTTTGATAATTACACATT
817712 TAAA
131 TAAA
817716 ATAATTATAA
Statistics
Matches: 133, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
133 126 0.95
134 7 0.05
ACGTcount: A:0.48, C:0.05, G:0.07, T:0.39
Consensus pattern (134 bp):
GACATTTAAAAATAATTATAATATTTAATTTAGAATTATTAATTAAAAAAGTTGACATAAAATAG
AATTTGTGATAATTATACGTTTAACAATAATTATAATTCAATAGAAATTTTGATAATTACACATT
TAAA
Found at i:817691 original size:44 final size:43
Alignment explanation
Indices: 817642--817727 Score: 129
Period size: 44 Copynumber: 2.0 Consensus size: 43
817632 GTTGACATAA
* *
817642 AATAG-AATTTGTGATAATTATACGTTTAACAATAATTATAATTC
1 AATAGAAATTT-TGATAATTACACATTTAA-AATAATTATAATTC
817686 AATAGAAATTTTGATAATTACACATTTAAAATAATTATAATT
1 AATAGAAATTTTGATAATTACACATTTAAAATAATTATAATT
817728 TTCATTTACA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
43 13 0.33
44 21 0.54
45 5 0.13
ACGTcount: A:0.47, C:0.06, G:0.07, T:0.41
Consensus pattern (43 bp):
AATAGAAATTTTGATAATTACACATTTAAAATAATTATAATTC
Found at i:821428 original size:9 final size:9
Alignment explanation
Indices: 821414--821444 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
821404 GTTAAACGAA
821414 TCGAGTTAT
1 TCGAGTTAT
*
821423 TCGAGTTAA
1 TCGAGTTAT
821432 TCGAGTTAT
1 TCGAGTTAT
821441 TCGA
1 TCGA
821445 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:821516 original size:9 final size:9
Alignment explanation
Indices: 821497--821533 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
821487 TGAGTTTTCA
*
821497 AATTTGAAT
1 AATTCGAAT
*
821506 AACTCGAAT
1 AATTCGAAT
821515 AATTCGAAT
1 AATTCGAAT
821524 AATTCGAAT
1 AATTCGAAT
821533 A
1 A
821534 TCAAACTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:822361 original size:5 final size:5
Alignment explanation
Indices: 822351--822376 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
822341 CTCGAAAATT
822351 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
822377 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:828376 original size:13 final size:14
Alignment explanation
Indices: 828358--828391 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
828348 CCATCTTTAC
828358 TTTTAATTTCT-TT
1 TTTTAATTTCTATT
*
828371 TTTTAATTTTTATT
1 TTTTAATTTCTATT
828385 TTTTAAT
1 TTTTAAT
828392 GTTGAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTTAATTTCTATT
Found at i:841678 original size:13 final size:14
Alignment explanation
Indices: 841651--841681 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
841641 ATGAGATGAG
841651 AATATTATCTTAAA
1 AATATTATCTTAAA
841665 AATATTAT-TTAAA
1 AATATTATCTTAAA
841678 AATA
1 AATA
841682 AAATAAATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.53
14 8 0.47
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (14 bp):
AATATTATCTTAAA
Found at i:847349 original size:49 final size:48
Alignment explanation
Indices: 847265--847361 Score: 149
Period size: 49 Copynumber: 2.0 Consensus size: 48
847255 TTTCTTTGCT
* *
847265 TAAAAACGCCTAAGACAGCCTAACTCGCAATGATAACGGATTCAACAG
1 TAAAAACACCTAAGACAGCCTAACTCGCAATGATAAAGGATTCAACAG
* *
847313 TAAAAACACCTAAGTCAGCTTAATCTCGCAATGATAAAGGATTCAACAG
1 TAAAAACACCTAAGACAGCCTAA-CTCGCAATGATAAAGGATTCAACAG
847362 AATTCCCTCA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
48 20 0.45
49 24 0.55
ACGTcount: A:0.42, C:0.23, G:0.15, T:0.20
Consensus pattern (48 bp):
TAAAAACACCTAAGACAGCCTAACTCGCAATGATAAAGGATTCAACAG
Found at i:847585 original size:36 final size:36
Alignment explanation
Indices: 847545--847615 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
847535 ATCAAGGGCT
*
847545 ACAATTAAAAGTTGTATACAATTAGAACTCTAAGAC
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
*
847581 ACAATTAGAAGCTGTATACAATTAGAACTCTAAGA
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGA
847616 TTACATAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.46, C:0.14, G:0.13, T:0.27
Consensus pattern (36 bp):
ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
Found at i:847586 original size:19 final size:19
Alignment explanation
Indices: 847562--847615 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 19
847552 AAAGTTGTAT
847562 ACAATTAGAACTCTAAGAC
1 ACAATTAGAACTCTAAGAC
* *
847581 ACAATTAGAA-GCT--GTAT
1 ACAATTAGAACTCTAAG-AC
847598 ACAATTAGAACTCTAAGA
1 ACAATTAGAACTCTAAGA
847616 TTACATAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
16 1 0.04
17 11 0.39
18 4 0.14
19 11 0.39
20 1 0.04
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.24
Consensus pattern (19 bp):
ACAATTAGAACTCTAAGAC
Found at i:847603 original size:17 final size:17
Alignment explanation
Indices: 847544--847607 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
847534 CATCAAGGGC
* *
847544 TACAATTAAAAGTTGTA
1 TACAATTAGAAGCTGTA
*
847561 TACAATTAGAA-CTCTAAGA
1 TACAATTAGAAGCTGT---A
*
847580 CACAATTAGAAGCTGTA
1 TACAATTAGAAGCTGTA
847597 TACAATTAGAA
1 TACAATTAGAA
847608 CTCTAAGATT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
16 2 0.05
17 21 0.57
19 11 0.30
20 3 0.08
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.28
Consensus pattern (17 bp):
TACAATTAGAAGCTGTA
Found at i:852958 original size:24 final size:25
Alignment explanation
Indices: 852931--852978 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
852921 TTTAAATAAA
* *
852931 TAAATAAATTTATTTATTT-TATAT
1 TAAATAAATATAATTATTTGTATAT
852955 TAAATAAATATAATTATTTGTATA
1 TAAATAAATATAATTATTTGTATA
852979 CGTAATATGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TAAATAAATATAATTATTTGTATAT
Found at i:858332 original size:98 final size:98
Alignment explanation
Indices: 858154--858456 Score: 545
Period size: 98 Copynumber: 3.1 Consensus size: 98
858144 GCATCTACCA
* * * *
858154 AAATTATCTAAAGATATCCACTTGTTGGAAAAAT-TAGCCTGTATTTCTTTTAGAAATGTAAGAG
1 AAATCATC-AAAGATATCCACTTGTTGGAAAAATGGA-CCCGTATTTCTTTCAGAAATGTAAGAG
858218 ATTCAATCTCAACTTTTGTTAATGAGGTTATTAAT
64 ATTCAATCTCAACTTTTGTTAATGAGGTTATTAAT
858253 AAATCATCAAAGATATCCACTTGTTGGAAAAATGGACCCGTATTTCTTTCAGAAATGTAAGAGAT
1 AAATCATCAAAGATATCCACTTGTTGGAAAAATGGACCCGTATTTCTTTCAGAAATGTAAGAGAT
858318 TCAATCTCAACTTTTGTTAATGAGGTTATTAAT
66 TCAATCTCAACTTTTGTTAATGAGGTTATTAAT
858351 AAATCATCAAAGATATCCACTTGTTGGAAAAATGGACCCGTATTTCTTTCAGAAATGTAAGAGAT
1 AAATCATCAAAGATATCCACTTGTTGGAAAAATGGACCCGTATTTCTTTCAGAAATGTAAGAGAT
858416 TCAATCTCAACTTTTGTTAATGAGGTTATTAAT
66 TCAATCTCAACTTTTGTTAATGAGGTTATTAAT
858449 AAATCATC
1 AAATCATC
858457 TTCTTTGAGA
Statistics
Matches: 199, Mismatches: 4, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
98 191 0.96
99 8 0.04
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.36
Consensus pattern (98 bp):
AAATCATCAAAGATATCCACTTGTTGGAAAAATGGACCCGTATTTCTTTCAGAAATGTAAGAGAT
TCAATCTCAACTTTTGTTAATGAGGTTATTAAT
Found at i:864163 original size:105 final size:105
Alignment explanation
Indices: 864022--864282 Score: 522
Period size: 105 Copynumber: 2.5 Consensus size: 105
864012 TAGAATTCTC
864022 AAATAATATCAAAATATTCAAAATATTTGTACAAATTAATTAAACTCATGTTATTACATCAAATA
1 AAATAATATCAAAATATTCAAAATATTTGTACAAATTAATTAAACTCATGTTATTACATCAAATA
864087 ATATCAAAATAACTCAAAAAAATTTATATTTTATTACATA
66 ATATCAAAATAACTCAAAAAAATTTATATTTTATTACATA
864127 AAATAATATCAAAATATTCAAAATATTTGTACAAATTAATTAAACTCATGTTATTACATCAAATA
1 AAATAATATCAAAATATTCAAAATATTTGTACAAATTAATTAAACTCATGTTATTACATCAAATA
864192 ATATCAAAATAACTCAAAAAAATTTATATTTTATTACATA
66 ATATCAAAATAACTCAAAAAAATTTATATTTTATTACATA
864232 AAATAATATCAAAATATTCAAAATATTTGTACAAATTAATTAAACTCATGT
1 AAATAATATCAAAATATTCAAAATATTTGTACAAATTAATTAAACTCATGT
864283 CCGGTTGTTG
Statistics
Matches: 156, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 156 1.00
ACGTcount: A:0.51, C:0.10, G:0.02, T:0.36
Consensus pattern (105 bp):
AAATAATATCAAAATATTCAAAATATTTGTACAAATTAATTAAACTCATGTTATTACATCAAATA
ATATCAAAATAACTCAAAAAAATTTATATTTTATTACATA
Found at i:864603 original size:18 final size:18
Alignment explanation
Indices: 864580--864617 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
864570 CTCAGAAAAT
*
864580 GATACATATAAGAGTTAG
1 GATACATATAAGAGCTAG
864598 GATACATATAAGAGCTAG
1 GATACATATAAGAGCTAG
864616 GA
1 GA
864618 AACGCACCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.45, C:0.08, G:0.24, T:0.24
Consensus pattern (18 bp):
GATACATATAAGAGCTAG
Found at i:865278 original size:7 final size:7
Alignment explanation
Indices: 865268--865293 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
865258 TTATATACAT
865268 AATACTA
1 AATACTA
865275 AATACTA
1 AATACTA
865282 AATACTA
1 AATACTA
865289 AATAC
1 AATAC
865294 CAATCAACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:865487 original size:20 final size:20
Alignment explanation
Indices: 865462--865499 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
865452 TTTATTTTTA
865462 AAAATCT-ATATAATAATTGT
1 AAAATCTAATATAA-AATTGT
865482 AAAATCTAATATAAAATT
1 AAAATCTAATATAAAATT
865500 TACCTCGTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.37
Consensus pattern (20 bp):
AAAATCTAATATAAAATTGT
Found at i:866535 original size:12 final size:12
Alignment explanation
Indices: 866493--866538 Score: 62
Period size: 11 Copynumber: 4.0 Consensus size: 12
866483 GGATTTTACA
866493 GAAATTTG-GAAG
1 GAAATTTGAG-AG
866505 G-AATTTGAGAG
1 GAAATTTGAGAG
866516 GAAA-TTGAGAG
1 GAAATTTGAGAG
866527 GAAATTTGAGAG
1 GAAATTTGAGAG
866539 AGGATTAGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
11 20 0.65
12 11 0.35
ACGTcount: A:0.41, C:0.00, G:0.35, T:0.24
Consensus pattern (12 bp):
GAAATTTGAGAG
Found at i:868425 original size:19 final size:19
Alignment explanation
Indices: 868402--868463 Score: 63
Period size: 20 Copynumber: 3.2 Consensus size: 19
868392 AAAAAATTAC
868402 AAAAAATTAAAATAATTTTT
1 AAAAAATTAAAATAA-TTTT
* *
868422 AAAAATTTAAAA-AATTCT
1 AAAAAATTAAAATAATTTT
*
868440 AAAAAATAAAGAAATAATTTT
1 AAAAAAT-TA-AAATAATTTT
868461 AAA
1 AAA
868464 TTTTAAAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
18 9 0.26
19 3 0.09
20 14 0.41
21 8 0.24
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (19 bp):
AAAAAATTAAAATAATTTT
Found at i:868434 original size:38 final size:38
Alignment explanation
Indices: 868411--868488 Score: 102
Period size: 39 Copynumber: 1.9 Consensus size: 38
868401 CAAAAAATTA
868411 AAATAATTTTTAAAAATTTAAAAAATTCTAAAAAATAAAG
1 AAATAA-TTTT-AAAATTTAAAAAATTCTAAAAAATAAAG
* *
868451 AAATAATTTTAAATTTTAAAAATTTTCTAAAATAATAA
1 AAATAATTTTAAAATTTAAAAA-ATTCTAAAA-AATAA
868489 TTTTGGGACC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
38 11 0.32
39 12 0.35
40 11 0.32
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (38 bp):
AAATAATTTTAAAATTTAAAAAATTCTAAAAAATAAAG
Found at i:894518 original size:21 final size:20
Alignment explanation
Indices: 894494--894532 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
894484 AAAGATTCTC
894494 GAAAGCAATTCTGATTAAGAT
1 GAAAGCAATT-TGATTAAGAT
* *
894515 GAAAGTAGTTTGATTAAG
1 GAAAGCAATTTGATTAAG
894533 CTTTTTAGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.41, C:0.05, G:0.23, T:0.31
Consensus pattern (20 bp):
GAAAGCAATTTGATTAAGAT
Found at i:903536 original size:9 final size:9
Alignment explanation
Indices: 903522--903577 Score: 64
Period size: 8 Copynumber: 6.3 Consensus size: 9
903512 TTCAGACTAA
903522 AAAAAAATC
1 AAAAAAATC
*
903531 AAAAAAATTTA
1 AAAAAAA--TC
903542 AAAAAAATC
1 AAAAAAATC
903551 -AAAAAAT-
1 AAAAAAATC
903558 AAAAAAAT-
1 AAAAAAATC
903566 AAAAAAATC
1 AAAAAAATC
903575 AAA
1 AAA
903578 GTCAAAATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
8 22 0.54
9 11 0.27
11 8 0.20
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.14
Consensus pattern (9 bp):
AAAAAAATC
Found at i:903536 original size:10 final size:10
Alignment explanation
Indices: 903521--903556 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
903511 GTTCAGACTA
903521 AAAAAAAATC
1 AAAAAAAATC
* *
903531 AAAAAAATTT
1 AAAAAAAATC
903541 AAAAAAAATC
1 AAAAAAAATC
903551 AAAAAA
1 AAAAAA
903557 TAAAAAAATA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.81, C:0.06, G:0.00, T:0.14
Consensus pattern (10 bp):
AAAAAAAATC
Found at i:903564 original size:20 final size:20
Alignment explanation
Indices: 903520--903564 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
903510 AGTTCAGACT
*
903520 AAAAAAAAATCAAAAAAATT
1 AAAAAAAAATCAAAAAAATA
*
903540 TAAAAAAAATC-AAAAAATA
1 AAAAAAAAATCAAAAAAATA
903559 AAAAAA
1 AAAAAA
903565 TAAAAAAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.82, C:0.04, G:0.00, T:0.13
Consensus pattern (20 bp):
AAAAAAAAATCAAAAAAATA
Found at i:905898 original size:99 final size:101
Alignment explanation
Indices: 905704--905909 Score: 272
Period size: 99 Copynumber: 2.1 Consensus size: 101
905694 TAACCATAGT
* * ***
905704 TTGCAATTTAAAAGATTGAGGCCACAACGGCGAATCTTACTTTCTCAAGCGGTGCAGCGGAACAG
1 TTGCAATTCAAAAGATTGAGGCCACAACGGCGAATCTTACTTTCCCAAGAAATGCAGCGGAACAG
* * *
905769 ATTAAAGCTACAACGGCGGATCTCACTTCCCTGACA
66 ATTAAAGCTACAACAGCGAATCTCACTTCCCCGACA
* *
905805 TTGCAA-TCAAAAGATTGAGGCCACAATGGCGAATCTTAC-TTCCCAGGAAATGCAGCGGAACAG
1 TTGCAATTCAAAAGATTGAGGCCACAACGGCGAATCTTACTTTCCCAAGAAATGCAGCGGAACAG
* * * *
905868 ATTGAAGCTACGACAGTGAATCTCATTTCCCCGACA
66 ATTAAAGCTACAACAGCGAATCTCACTTCCCCGACA
905904 TTGCAA
1 TTGCAA
905910 GTAAATAGAT
Statistics
Matches: 91, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
99 54 0.59
100 31 0.34
101 6 0.07
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.22
Consensus pattern (101 bp):
TTGCAATTCAAAAGATTGAGGCCACAACGGCGAATCTTACTTTCCCAAGAAATGCAGCGGAACAG
ATTAAAGCTACAACAGCGAATCTCACTTCCCCGACA
Found at i:905928 original size:100 final size:100
Alignment explanation
Indices: 905704--905938 Score: 249
Period size: 99 Copynumber: 2.3 Consensus size: 100
905694 TAACCATAGT
* * * * ***
905704 TTGCAATTTAAAAGATTGAGGCCACAACGGCGAATCTTACTTTCTCAAGCGGTGCAGCGGAACAG
1 TTGCAA-TCAAAAGATTAAAGCCACAACGGCGAATCTTACTTTCCCAAGAAATGCAGCGGAACAG
* * *
905769 ATTAAAGCTACAACGGCGGATCTCACTTCCCTGACA
65 ATTAAAGCTACAACAGCGAATCTCACTTCCCCGACA
* * * *
905805 TTGCAATCAAAAGATTGAGGCCACAATGGCGAATCTTAC-TTCCCAGGAAATGCAGCGGAACAGA
1 TTGCAATCAAAAGATTAAAGCCACAACGGCGAATCTTACTTTCCCAAGAAATGCAGCGGAACAGA
* * * *
905869 TTGAAGCTACGACAGTGAATCTCATTTCCCCGACA
66 TTAAAGCTACAACAGCGAATCTCACTTCCCCGACA
* *
905904 TTGCAAGT-AAATAGATTAAAGCCACGACGGTGAAT
1 TTGCAA-TCAAA-AGATTAAAGCCACAACGGCGAAT
905939 TTTAATTCCT
Statistics
Matches: 113, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
99 57 0.50
100 50 0.44
101 6 0.05
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.22
Consensus pattern (100 bp):
TTGCAATCAAAAGATTAAAGCCACAACGGCGAATCTTACTTTCCCAAGAAATGCAGCGGAACAGA
TTAAAGCTACAACAGCGAATCTCACTTCCCCGACA
Found at i:906488 original size:132 final size:132
Alignment explanation
Indices: 906318--907804 Score: 2255
Period size: 132 Copynumber: 11.3 Consensus size: 132
906308 AGCTACGAAT
**
906318 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
1 CAGATTCTGTCACCCTAATAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
*
906383 AGTGGAGAAGCAGATTTAAGCCATTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
66 AGTGGAGAAGCAGATTTAAGCCATTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCAAAGAT
906448 CG
131 CG
*
906450 CAGATTCTGTCACCCTAATAAGTAGCGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
1 CAGATTCTGTCACCCTAATAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
* *
906515 AGTGGAGAAGCAGATTTAAGCCTTTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
66 AGTGGAGAAGCAGATTTAAGCCATTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCAAAGAT
906580 CG
131 CG
* * *
906582 CAGATTCCGTCACCCTAATAAGTAGCGGAGCAGATCGAAGATGGTGAATCTCATCTTCCCAATAC
1 CAGATTCTGTCACCCTAATAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
* *
906647 AGTGGAGAAGCAGATTTAAGCCTTTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
66 AGTGGAGAAGCAGATTTAAGCCATTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCAAAGAT
906712 CG
131 CG
* * *
906714 CAGATTCCGTCACCCTAATAAGTAGCGGAGCAGATCGAAGATGGTGAATCTCATCTTCCCAATAC
1 CAGATTCTGTCACCCTAATAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
* *
906779 AGTGGAGAAGCAGATTTAAGCCTTTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
66 AGTGGAGAAGCAGATTTAAGCCATTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCAAAGAT
906844 CG
131 CG
* * *
906846 CAGATTCCGTCACCCTAATAAGTAGCGGAGCAGATCGAAGATGGTGAATCTCATCTTCCCAATAC
1 CAGATTCTGTCACCCTAATAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
* *
906911 AGTGGAGAAGCAGATTTAAGCCTTTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCGAAGAT
66 AGTGGAGAAGCAGATTTAAGCCATTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCAAAGAT
906976 CG
131 CG
* * *
906978 CAGATTCCGTCACCCTAATAAGTAGCGGAGCAGATCGAAGATGGTGAATCTCATCTTCCCAATAC
1 CAGATTCTGTCACCCTAATAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
* **
907043 AGTGGAGAAGCAGATTTAAGCCATTTGTCCTATCACCCTAAGCAGTAGTGGAGTATGTTTAAGAT
66 AGTGGAGAAGCAGATTTAAGCCATTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCAAAGAT
**
907108 TA
131 CG
** *
907110 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAT
1 CAGATTCTGTCACCCTAATAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
* * * *
907175 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCGCCCTAAGCAGTAGTGAAGTAGGTTAAAGAT
66 AGTGGAGAAGCAGATTTAAGCCATTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCAAAGAT
**
907240 TA
131 CG
*
907242 CAGATTCTGTCACCCTAAGCAA-TAGTGGAGCAGATCGAAGATGGTGAATCTTATCCTT-CCAAT
1 CAGATTCTGTCACCCTAA-TAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTAT-CTTCCCAAT
* * * *
907305 ACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAGCAGTAGAGGAGTTGGTTAAAG
64 ACAGTGGAGAAGCAGATTTAAGCCATTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCAAAG
**
907370 ATTA
129 ATCG
* *
907374 CAGATTCTGTCACCCTAATCAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATAC
1 CAGATTCTGTCACCCTAATAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
* * * *
907439 AGTGGAGAAGCAGATTTAAGCCATTAGTCGTATAACCCTAAGCAGTAGAGGAGTAGGAT-AAAGA
66 AGTGGAGAAGCAGATTTAAGCCATTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGG-TCAAAGA
**
907503 TTA
130 TCG
** *
907506 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAT
1 CAGATTCTGTCACCCTAATAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
* * * *
907571 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCGCTCTAAGCAGTAGTGGAGTAGGTTAAAGAT
66 AGTGGAGAAGCAGATTTAAGCCATTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCAAAGAT
**
907636 TA
131 CG
* *
907638 CAGATTCTGTCACCCT-ATGCAGTAGTGGAGCAGATCGAAAATGGTGAATCTTATCTTCCCAATA
1 CAGATTCTGTCACCCTAAT-AAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATA
* * *
907702 CAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACTCTAAGCAGTAGCGGAGTAGGTCAAAGA
65 CAGTGGAGAAGCAGATTTAAGCCATTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCAAAGA
907767 -CTG
130 TC-G
* * **
907770 TAGATTCTGTCCCCCTAAGCAGTAGTGGAGCAGAT
1 CAGATTCTGTCACCCTAATAAGTAGTGGAGCAGAT
907805 GAACAATAAC
Statistics
Matches: 1291, Mismatches: 55, Indels: 18
0.95 0.04 0.01
Matches are distributed among these distances:
131 6 0.00
132 1279 0.99
133 6 0.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (132 bp):
CAGATTCTGTCACCCTAATAAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
AGTGGAGAAGCAGATTTAAGCCATTTGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCAAAGAT
CG
Found at i:909263 original size:3 final size:3
Alignment explanation
Indices: 909204--909243 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
909194 AATCTAATAC
909204 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
909244 GTTGTTGTTG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:917966 original size:7 final size:7
Alignment explanation
Indices: 917941--917973 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
917931 AATGATGGGA
917941 AAAAATG
1 AAAAATG
917948 AAAAGATG
1 AAAA-ATG
917956 -AAAATG
1 AAAAATG
917962 AAAAATG
1 AAAAATG
917969 AAAAA
1 AAAAA
917974 GTAAAATGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 3 0.12
7 18 0.75
8 3 0.12
ACGTcount: A:0.73, C:0.00, G:0.15, T:0.12
Consensus pattern (7 bp):
AAAAATG
Found at i:919889 original size:50 final size:50
Alignment explanation
Indices: 919243--919889 Score: 422
Period size: 50 Copynumber: 12.9 Consensus size: 50
919233 ACTTCCTTAG
* * * *
919243 CAGTGCAATGAAACAGATTGAAGCTACGATGGCAGATCTGGTTTCCCTAA
1 CAGTGCAATGAAAAAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA
* * * * * * *** *
919293 TATTGCAATTAAAAAGATTGAAGCCACAACGGCGGGTCTTACTT-CCTTA
1 CAGTGCAATGAAAAAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA
* * * *
919342 GCAGTGCAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGA
1 -CAGTGCAATGAAAAAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA
* * * * * * *** *
919393 TATTGCAATTAAAAAGATTGAAGCCACAACGGCGGGTCTTACTT-CCTTA
1 CAGTGCAATGAAAAAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA
* * * *
919442 GCAGTGCAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGA
1 -CAGTGCAATGAAAAAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA
* * * * * * *** *
919493 TATTGCAATTAAAAAGATTGAAGCCACAACGGCGGGTCTTACTT-CCTTA
1 CAGTGCAATGAAAAAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA
* * * *
919542 GCAGTGCAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGA
1 -CAGTGCAATGAAAAAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA
* * * * * * *** *
919593 TATTGCAATTAAAAAGATTGAAGCCACAACGGCGGGTCTTACTT-CCTTA
1 CAGTGCAATGAAAAAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA
* * * *
919642 GCAGTGCAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGA
1 -CAGTGCAATGAAAAAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA
* * * * * * *** *
919693 TATTGCAATTAAAAAGATTGAAGCCACAACGGCGGGTCTTACTT-CCTTA
1 CAGTGCAATGAAAAAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA
* * * *
919742 GCAGTGCAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGA
1 -CAGTGCAATGAAAAAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA
* * * * * ***
919793 TATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTGA
1 CAGTGCAATGAAAAAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA
* ** ** *
919843 CGGTGCGGTGGGATAGATTGAAGCTACGACGGCGGATCTGGTTTCCC
1 CAGTGCAATGAAAAAGATTGAAGCTACGACGGCGGATCTGGTTTCCC
919890 CAATATTGCA
Statistics
Matches: 422, Mismatches: 165, Indels: 20
0.70 0.27 0.03
Matches are distributed among these distances:
49 20 0.05
50 382 0.91
51 20 0.05
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (50 bp):
CAGTGCAATGAAAAAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGA
Found at i:919911 original size:100 final size:100
Alignment explanation
Indices: 919229--919899 Score: 1209
Period size: 100 Copynumber: 6.7 Consensus size: 100
919219 AAACCATAGA
* * * *
919229 TCTTACTTCCTTAGCAGTGCAATGAAACAGATTGAAGCTACGATGGCAGATCTGGTTTCCCTAAT
1 TCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGAT
919294 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGGG
66 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGGG
919329 TCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGAT
1 TCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGAT
919394 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGGG
66 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGGG
919429 TCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGAT
1 TCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGAT
919494 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGGG
66 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGGG
919529 TCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGAT
1 TCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGAT
919594 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGGG
66 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGGG
919629 TCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGAT
1 TCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGAT
919694 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGGG
66 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGGG
919729 TCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGAT
1 TCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGAT
*
919794 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGGA
66 ATTGCAATTAAAAAGATTGAAGCCACAACGGCGGG
* * * * * * **
919829 TCTTACTTCCCT-GACGGTGCGGTGGGATAGATTGAAGCTACGACGGCGGATCTGGTTTCCCCAA
1 TCTTACTTCCTTAG-CAGTGCAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGA
919893 TATTGCA
65 TATTGCA
919900 GTTGAATAGA
Statistics
Matches: 557, Mismatches: 13, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
99 1 0.00
100 556 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (100 bp):
TCTTACTTCCTTAGCAGTGCAGTGGAACAGATTGAAGCTACGACGGCAGATCTGGTTTCCCTGAT
ATTGCAATTAAAAAGATTGAAGCCACAACGGCGGG
Found at i:920477 original size:132 final size:132
Alignment explanation
Indices: 919897--920437 Score: 967
Period size: 132 Copynumber: 4.1 Consensus size: 132
919887 CCCCAATATT
* * * * *
919897 GCAGTTGAATAGATTAAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCATATCAAAGAT
** **
919962 GGCGGATTTTACCTC-CCTATGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGG
66 GGTAGATTTTACCTCGCGGA-GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGG
920026 GCA
130 GCA
920029 GCAGTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCATATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCATATCAAAGAT
920094 GGTAGATTTTACCTCGCGGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGG
66 GGTAGATTTTACCTCGCGGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGG
920159 CA
131 CA
920161 GCAGTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCATATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCATATCAAAGAT
920226 GGTAGATTTTACCTCGCGGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGG
66 GGTAGATTTTACCTCGCGGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGG
920291 CA
131 CA
920293 GCAGTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCATATCAAAGAT
1 GCAGTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCATATCAAAGAT
*
920358 GGTAGATTTTACCTCGCGGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCGGGG
66 GGTAGATTTTACCTCGCGGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGG
920423 CA
131 CA
*
920425 ACAGTGGAATAGA
1 GCAGTGGAATAGA
920438 CAGAAGAAAT
Statistics
Matches: 397, Mismatches: 11, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
132 395 0.99
133 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (132 bp):
GCAGTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGTGGAGCATATCAAAGAT
GGTAGATTTTACCTCGCGGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGG
CA
Found at i:922239 original size:34 final size:34
Alignment explanation
Indices: 922195--922278 Score: 89
Period size: 34 Copynumber: 2.5 Consensus size: 34
922185 TTTAGCTTTT
* * *
922195 ATATATTTTATATTTTATAGATATATACATATTC
1 ATATTTTTTATATTTTAAAGATATATACATATAC
** * *
922229 AT-TTCTTTTATGCTGTAAATATATATACATATAC
1 ATATT-TTTTATATTTTAAAGATATATACATATAC
922263 ATATTTTTTATATTTT
1 ATATTTTTTATATTTT
922279 CATTTTATTT
Statistics
Matches: 38, Mismatches: 10, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
33 1 0.03
34 35 0.92
35 2 0.05
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.55
Consensus pattern (34 bp):
ATATTTTTTATATTTTAAAGATATATACATATAC
Found at i:932156 original size:30 final size:30
Alignment explanation
Indices: 932122--932180 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
932112 CTTAACAAGC
*
932122 AAATGCCTCTAAAATAATAACAAATTTAAT
1 AAATGCCTCTAAAATAATAACAAAATTAAT
* * *
932152 AAATGCTTTTAAAATGATAACAAAATTAA
1 AAATGCCTCTAAAATAATAACAAAATTAA
932181 CAATAAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (30 bp):
AAATGCCTCTAAAATAATAACAAAATTAAT
Found at i:935522 original size:25 final size:25
Alignment explanation
Indices: 935482--935531 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
935472 GTTGTTAATT
*
935482 AGAGTTTAAGT-GGAAAACTAAAAAC
1 AGAGTTTAAGTAGAAAAAC-AAAAAC
*
935507 AGAGTTTAATTAGAAAAACAAAAAC
1 AGAGTTTAAGTAGAAAAACAAAAAC
935532 CAAATAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.56, C:0.08, G:0.16, T:0.20
Consensus pattern (25 bp):
AGAGTTTAAGTAGAAAAACAAAAAC
Found at i:937322 original size:195 final size:194
Alignment explanation
Indices: 936990--937369 Score: 701
Period size: 195 Copynumber: 2.0 Consensus size: 194
936980 GAACATAAAA
936990 AACATTTTTCATATTTCACATAACATGTTACATATTTTAATTATCTTATAACATTTCAAACGACA
1 AACATTTTTCATATTTCACATAACATGTTACATATTTTAATTATCTTATAACATTTCAAACGACA
937055 TATTTATCTCAAATTTTTTGTTTGATTTTAAATATTATAATAATTAATAATGTTAAAATTAATTT
66 TATTTATCTCAAATTTTTTGTTTGATTTTAAATATTATAATAATTAATAATGTTAAAATTAATTT
*
937120 TTTATAATTAATAAAAATT-AAGGTGTGAGATTAGCGT-TATATATATAAGATAATATTAATATA
131 TTTATAATTAATAAAAATTAAAGGTGTGAGATTA--ATAT-TATATATAAGATAATATTAATATA
937183 TT
193 TT
937185 AACATTTTTCATATTTCACATAACATGTTACATATTTTAATTATCTTATAACATTTCAAACGACA
1 AACATTTTTCATATTTCACATAACATGTTACATATTTTAATTATCTTATAACATTTCAAACGACA
937250 TATTTATCTCAAATTTTTTGTTTGATTTTAAATATTATAATAATTAATAATGTTAAAATTAATTT
66 TATTTATCTCAAATTTTTTGTTTGATTTTAAATATTATAATAATTAATAATGTTAAAATTAATTT
*
937315 TTTATAATTAATAAAAATTAAATGTGTGAGATTAATATTATATATAAGATAATAT
131 TTTATAATTAATAAAAATTAAAGGTGTGAGATTAATATTATATATAAGATAATAT
937370 CAAATCACCA
Statistics
Matches: 181, Mismatches: 2, Indels: 5
0.96 0.01 0.03
Matches are distributed among these distances:
194 18 0.10
195 150 0.83
196 13 0.07
ACGTcount: A:0.41, C:0.07, G:0.06, T:0.46
Consensus pattern (194 bp):
AACATTTTTCATATTTCACATAACATGTTACATATTTTAATTATCTTATAACATTTCAAACGACA
TATTTATCTCAAATTTTTTGTTTGATTTTAAATATTATAATAATTAATAATGTTAAAATTAATTT
TTTATAATTAATAAAAATTAAAGGTGTGAGATTAATATTATATATAAGATAATATTAATATATT
Found at i:947677 original size:18 final size:18
Alignment explanation
Indices: 947645--947681 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
947635 AAATTTTAAA
947645 TTAATTAATTCGAGTTAT
1 TTAATTAATTCGAGTTAT
947663 TTAAGTTAATT-GAGTTAT
1 TTAA-TTAATTCGAGTTAT
947681 T
1 T
947682 CGAATAAACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.32, C:0.03, G:0.14, T:0.51
Consensus pattern (18 bp):
TTAATTAATTCGAGTTAT
Found at i:947933 original size:21 final size:21
Alignment explanation
Indices: 947893--947933 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
947883 CCCCCTTTTA
* * *
947893 ATCACCACCGTCCATTTTCCC
1 ATCACAACCGTCAATGTTCCC
947914 ATCACAACCGTCAATGTTCC
1 ATCACAACCGTCAATGTTCC
947934 TCTTCACTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.41, G:0.07, T:0.27
Consensus pattern (21 bp):
ATCACAACCGTCAATGTTCCC
Found at i:961434 original size:58 final size:58
Alignment explanation
Indices: 961357--961473 Score: 234
Period size: 58 Copynumber: 2.0 Consensus size: 58
961347 GCCAATTGGA
961357 ATACTGTAAATGATTACGCACACTGAAATAGAGAAAAGAATCAAGAAAAAGAAAAAGG
1 ATACTGTAAATGATTACGCACACTGAAATAGAGAAAAGAATCAAGAAAAAGAAAAAGG
961415 ATACTGTAAATGATTACGCACACTGAAATAGAGAAAAGAATCAAGAAAAAGAAAAAGG
1 ATACTGTAAATGATTACGCACACTGAAATAGAGAAAAGAATCAAGAAAAAGAAAAAGG
961473 A
1 A
961474 AATCAGGCTT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 59 1.00
ACGTcount: A:0.56, C:0.10, G:0.19, T:0.15
Consensus pattern (58 bp):
ATACTGTAAATGATTACGCACACTGAAATAGAGAAAAGAATCAAGAAAAAGAAAAAGG
Found at i:974584 original size:525 final size:526
Alignment explanation
Indices: 973583--974633 Score: 2095
Period size: 525 Copynumber: 2.0 Consensus size: 526
973573 TTAATATTTT
973583 ATAATATAATAATAAATATTTTGTATTTAAAATAATTTAAAATTTCTTGAAAATTTATTGCTGTG
1 ATAATATAATAATAAATATTTTGTATTTAAAATAATTTAAAATTTCTTGAAAATTTATTGCTGTG
973648 AGAAAAACTTTGACGTTTTGTCTAGGATTACTAAAAAATTATATAACAAAAGTCATTTTATCAAT
66 AGAAAAACTTTGACGTTTTGTCTAGGATTACTAAAAAATTATATAACAAAAGTCATTTTATCAAT
973713 ATGAAAAAATTGAAATTGAATCCAACCGAACCGAATTATGATGGACATTTAAAAATTCTAAAAAA
131 ATGAAAAAATTGAAATTGAATCCAACCGAACCGAATTATGATGGACATTTAAAAATTCTAAAAAA
973778 AAGCCTATTATCACCTTAGGCTGCTAACATTAGCAGTGCATGGGTGGTTAAGTGGGGAAGGGATC
196 AAGCCTATTATCACCTTAGGCTGCTAACATTAGCAGTGCATGGGTGGTTAAGTGGGGAAGGGATC
973843 GCCTTCTAGGGCCGGTAACTGTCGAAGGGGGCTTAGGGCGATGCCAGTAGGCTGGGCTTGGTGGC
261 GCCTTCTAGGGCCGGTAACTGTCGAAGGGGGCTTAGGGCGATGCCAGTAGGCTGGGCTTGGTGGC
973908 CTAGGCTAGTGTTAGGCTGAGGAGGTTGCTAATGTGCTAGGTTAGGGCCTGGATAAGTTGGTGTA
326 CTAGGCTAGTGTTAGGCTGAGGAGGTTGCTAATGTGCTAGGTTAGGGCCTGGATAAGTTGGTGTA
973973 GGTGGTGGCTATGGTGCACTGCGGTGGCAGTGATTACAGGAGTTGTGGGTAGGCCCAACAATTAA
391 GGTGGTGGCTATGGTGCACTGCGGTGGCAGTGATTACAGGAGTTGTGGGTAGGCCCAACAATTAA
974038 AAAATAAAAAAGTAAAAAGTAAAATAAATTGAAAATAAAATTAAAGCTAAGATCGAAAATAGAAG
456 AAAATAAAAAAGTAAAAAGTAAAATAAATTGAAAATAAAATTAAAGCTAAGATCGAAAATAGAAG
974103 ACAAAG
521 ACAAAG
974109 ATAATATAAT-ATAAATATTTTGTATTTAAAATAATTTAAAATTTCTTGAAAATTTATTGCTGTG
1 ATAATATAATAATAAATATTTTGTATTTAAAATAATTTAAAATTTCTTGAAAATTTATTGCTGTG
974173 AGAAAAACTTTGACGTTTTGTCTAGGATTACTAAAAAATTATATAACAAAAGTCATTTTATCAAT
66 AGAAAAACTTTGACGTTTTGTCTAGGATTACTAAAAAATTATATAACAAAAGTCATTTTATCAAT
974238 ATGAAAAAATTGAAATTGAATCCAACCGAACCGAATTATGATGGACATTTAAAAATTCTAAAAAA
131 ATGAAAAAATTGAAATTGAATCCAACCGAACCGAATTATGATGGACATTTAAAAATTCTAAAAAA
974303 AAGCCTATTATCACCTTAGGCTGCTAACATTAGCAGTGCATGGGTGGTTAAGTGGGGAAGGGATC
196 AAGCCTATTATCACCTTAGGCTGCTAACATTAGCAGTGCATGGGTGGTTAAGTGGGGAAGGGATC
974368 GCCTTCTAGGGCCGGTAACTGTCGAAGGGGGCTTAGGGCGATGCCAGTAGGCTGGGCTTGGTGGC
261 GCCTTCTAGGGCCGGTAACTGTCGAAGGGGGCTTAGGGCGATGCCAGTAGGCTGGGCTTGGTGGC
974433 CTAGGCTAGTGTTAGGCTGAGGAGGTTGCTAATGTGCTAGGTTAGGGCCTGGATAAGTTGGTGTA
326 CTAGGCTAGTGTTAGGCTGAGGAGGTTGCTAATGTGCTAGGTTAGGGCCTGGATAAGTTGGTGTA
974498 GGTGGTGGCTATGGTGCACTGCGGTGGCAGTGATTACAGGAGTTGTGGGTAGGCCCAACAATTAA
391 GGTGGTGGCTATGGTGCACTGCGGTGGCAGTGATTACAGGAGTTGTGGGTAGGCCCAACAATTAA
974563 AAAATAAAAAAGTAAAAAGTAAAATAAATTGAAAATAAAATTAAAGCTAAGATCGAAAATAGAAG
456 AAAATAAAAAAGTAAAAAGTAAAATAAATTGAAAATAAAATTAAAGCTAAGATCGAAAATAGAAG
974628 ACAAAG
521 ACAAAG
974634 CCACCAAATA
Statistics
Matches: 525, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
525 515 0.98
526 10 0.02
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.28
Consensus pattern (526 bp):
ATAATATAATAATAAATATTTTGTATTTAAAATAATTTAAAATTTCTTGAAAATTTATTGCTGTG
AGAAAAACTTTGACGTTTTGTCTAGGATTACTAAAAAATTATATAACAAAAGTCATTTTATCAAT
ATGAAAAAATTGAAATTGAATCCAACCGAACCGAATTATGATGGACATTTAAAAATTCTAAAAAA
AAGCCTATTATCACCTTAGGCTGCTAACATTAGCAGTGCATGGGTGGTTAAGTGGGGAAGGGATC
GCCTTCTAGGGCCGGTAACTGTCGAAGGGGGCTTAGGGCGATGCCAGTAGGCTGGGCTTGGTGGC
CTAGGCTAGTGTTAGGCTGAGGAGGTTGCTAATGTGCTAGGTTAGGGCCTGGATAAGTTGGTGTA
GGTGGTGGCTATGGTGCACTGCGGTGGCAGTGATTACAGGAGTTGTGGGTAGGCCCAACAATTAA
AAAATAAAAAAGTAAAAAGTAAAATAAATTGAAAATAAAATTAAAGCTAAGATCGAAAATAGAAG
ACAAAG
Found at i:979436 original size:17 final size:19
Alignment explanation
Indices: 979414--979450 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
979404 CCTATTTATC
979414 TTATAC-CTTA-ATATATA
1 TTATACGCTTATATATATA
979431 TTATACGCTTATATATATA
1 TTATACGCTTATATATATA
979450 T
1 T
979451 ATTGAGAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 6 0.33
18 4 0.22
19 8 0.44
ACGTcount: A:0.38, C:0.11, G:0.03, T:0.49
Consensus pattern (19 bp):
TTATACGCTTATATATATA
Found at i:980803 original size:34 final size:35
Alignment explanation
Indices: 980745--980811 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
980735 CAAACACCAA
980745 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
*
980780 AAAATATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
980812 TATTTTACTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:981097 original size:23 final size:24
Alignment explanation
Indices: 981063--981108 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
981053 TATTTTTTTC
981063 TTTTTTCTTTTCAT-TTAAAATTG
1 TTTTTTCTTTTCATATTAAAATTG
*
981086 TTTTTT-TATTTCATATTATAATT
1 TTTTTTCT-TTTCATATTAAAATT
981109 TTTAAAAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 1 0.05
23 12 0.60
24 7 0.35
ACGTcount: A:0.24, C:0.07, G:0.02, T:0.67
Consensus pattern (24 bp):
TTTTTTCTTTTCATATTAAAATTG
Found at i:982113 original size:12 final size:10
Alignment explanation
Indices: 982087--982133 Score: 58
Period size: 10 Copynumber: 4.4 Consensus size: 10
982077 AACTAAATCC
982087 TTTCTCTCAA
1 TTTCTCTCAA
982097 TTTCTCTCTAA
1 TTTCTCTC-AA
982108 TATTCTCTCAAA
1 T-TTCTCTC-AA
*
982120 TTCCTCTCAA
1 TTTCTCTCAA
982130 TTTC
1 TTTC
982134 CTATTTAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
10 13 0.41
11 9 0.28
12 10 0.31
ACGTcount: A:0.21, C:0.30, G:0.00, T:0.49
Consensus pattern (10 bp):
TTTCTCTCAA
Found at i:982186 original size:28 final size:27
Alignment explanation
Indices: 982137--982194 Score: 73
Period size: 29 Copynumber: 2.1 Consensus size: 27
982127 CAATTTCCTA
*
982137 TTTAAAAAAGCTTTAATTTTTTAATTATT
1 TTTAAAAAAGCTTTAATATTTT-ATT-TT
*
982166 TTTAAAAAAGTTTTAA-ATTTTATTTT
1 TTTAAAAAAGCTTTAATATTTTATTTT
982192 TTT
1 TTT
982195 GAATTTTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 5 0.19
27 3 0.11
28 4 0.15
29 15 0.56
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (27 bp):
TTTAAAAAAGCTTTAATATTTTATTTT
Found at i:983314 original size:7 final size:7
Alignment explanation
Indices: 983302--983327 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
983292 TAGTCGATTG
983302 GTATTTA
1 GTATTTA
983309 GTATTTA
1 GTATTTA
983316 GTATTTA
1 GTATTTA
983323 GTATT
1 GTATT
983328 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:984449 original size:111 final size:111
Alignment explanation
Indices: 984251--984472 Score: 417
Period size: 111 Copynumber: 2.0 Consensus size: 111
984241 ATTCTATACT
*
984251 GCTACCAAACATGGGTTGTTCCGTGTTTTGTAACCCACTAATCGAGTGTCGGGTAGGGGTCGTGT
1 GCTACCAAACATGGGTTGTTCCGTGTTTTGTAACCCACTAATCGAGTGTCGGGCAGGGGTCGTGT
* *
984316 ATGCCTCTCGAACAGCAGTCGCAAGTGCATCATTTGGCGATATAAA
66 ATACCTCTCGAACAGCAATCGCAAGTGCATCATTTGGCGATATAAA
984362 GCTACCAAACATGGGTTGTTCCGTGTTTTGTAACCCACTAATCGAGTGTCGGGCAGGGGTCGTGT
1 GCTACCAAACATGGGTTGTTCCGTGTTTTGTAACCCACTAATCGAGTGTCGGGCAGGGGTCGTGT
984427 ATACCTCTCGAACAGCAATCGCAAGTGCATCATTTGGCGATATAAA
66 ATACCTCTCGAACAGCAATCGCAAGTGCATCATTTGGCGATATAAA
984473 TTGTACATAT
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
111 108 1.00
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (111 bp):
GCTACCAAACATGGGTTGTTCCGTGTTTTGTAACCCACTAATCGAGTGTCGGGCAGGGGTCGTGT
ATACCTCTCGAACAGCAATCGCAAGTGCATCATTTGGCGATATAAA
Found at i:985114 original size:126 final size:125
Alignment explanation
Indices: 984889--985420 Score: 766
Period size: 126 Copynumber: 4.3 Consensus size: 125
984879 GACCAAACAA
* *
984889 GAGCTACTGGAGCAAAAGCGGGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATC
1 GAGCTACTGTAGCAAAAGC-GGTCCACATGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATC
* * * * *
984954 ATGCTTAAAGCGTTTTTAACACTATTTGCTCAGAAACATCTACTCAAAATTATTTTTTCAG
65 CTGCTTAAAGCATTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAG
* *
985015 GAGCTACTGTAGCAAAAGCGGATCCATATGGGAGCTTCTTTCAGTACTTTTGTTGACAAAGCATC
1 GAGCTACTGTAGCAAAAGCGG-TCCACATGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATC
985080 CTGCTTAAAGCATTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAG
65 CTGCTTAAAGCATTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAG
*
985141 GAGCTACTGTAGC---A-C-G------TGAGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCC
1 GAGCTACTGTAGCAAAAGCGGTCCACATGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCC
* *
985195 TGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTAGTTTTTCAG
66 TGCTTAAAGCATTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAG
* * *
985255 GAGCTACTGTAGCAAAAGCGCGTCAACATGAGAGCTTCTTTCAGTACTTTTGCTGACAATGCATC
1 GAGCTACTGTAGCAAAAGCG-GTCCACATGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATC
* *
985320 CTGTTTAAAGCATTTTTGACACTATTTACTCAGAAACGTCTTA-TCGAAATTATTTTTT-AG
65 CTGCTTAAAGCATTTTTGACACTATTTGCTCAGAAACGTC-TACTCGAAATTATTTTTTCAG
*
985380 GAGCTACTGTAGCAAAAGCGAGTCCACGTGGGAGCTTCTTT
1 GAGCTACTGTAGCAAAAGCG-GTCCACATGGGAGCTTCTTT
985421 AAATTAACAA
Statistics
Matches: 370, Mismatches: 22, Indels: 29
0.88 0.05 0.07
Matches are distributed among these distances:
114 107 0.29
117 1 0.00
118 1 0.00
120 1 0.00
121 1 0.00
122 1 0.00
123 1 0.00
125 41 0.11
126 214 0.58
127 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.33
Consensus pattern (125 bp):
GAGCTACTGTAGCAAAAGCGGTCCACATGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCC
TGCTTAAAGCATTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAG
Found at i:985251 original size:114 final size:115
Alignment explanation
Indices: 985046--985393 Score: 504
Period size: 114 Copynumber: 2.9 Consensus size: 115
985036 ATCCATATGG
*
985046 GAGCTTCTTTCAGTACTTTTGTTGACAAAGCATCCTGCTTAAAGCATTTTTGACACTATTTGCTC
1 GAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCCTGCTTAAAGCATTTTTGACACTATTTGCTC
985111 AGAAACGTCTACTCGAAATTATTTTTTCAGGAGCTACTGTAGCA-CG-TGA
66 AGAAACGTCTACTCGAAATTA-TTTTTCAGGAGCTACTGTAGCAGCGATGA
*
985160 GAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCCTGCTTAAAGCGTTTTTGACACTATTTGCTC
1 GAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCCTGCTTAAAGCATTTTTGACACTATTTGCTC
985225 AGAAACGTCTACTCGAAATTAGTTTTTCAGGAGCTACTGTAGCAAAAGCGCGTCAACATGA
66 AGAAACGTCTACTCGAAATTA-TTTTTCAGGAGCTACTGTAGC---A--GCG-----ATGA
* * *
985286 GAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGTTTAAAGCATTTTTGACACTATTTACTC
1 GAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCCTGCTTAAAGCATTTTTGACACTATTTGCTC
*
985351 AGAAACGTCTTA-TCGAAATTATTTTTTAGGAGCTACTGTAGCA
66 AGAAACGTC-TACTCGAAATTATTTTTCAGGAGCTACTGTAGCA
985394 AAAGCGAGTC
Statistics
Matches: 213, Mismatches: 8, Indels: 18
0.89 0.03 0.08
Matches are distributed among these distances:
114 105 0.49
117 1 0.00
120 2 0.01
122 1 0.00
125 20 0.09
126 82 0.38
127 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (115 bp):
GAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCCTGCTTAAAGCATTTTTGACACTATTTGCTC
AGAAACGTCTACTCGAAATTATTTTTCAGGAGCTACTGTAGCAGCGATGA
Done.