Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold337
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2178121
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.32
Warning! 137747 characters in sequence are not A, C, G, or T
File 4 of 7
Found at i:985343 original size:240 final size:239
Alignment explanation
Indices: 984913--985393 Score: 804
Period size: 240 Copynumber: 2.0 Consensus size: 239
984903 AAAGCGGGTC
*
984913 CACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCATGCTTAAAGCGTTTTTAACACTA
1 CACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCATGCTTAAAGCGTTTTTAACACTA
* * *
984978 TTTGCTCAGAAACATCTACTCAAAATTATTTTTTCAGGAGCTACTGTAGCAAAAGCGGATCCATA
66 TTTGCTCAGAAACATCTACTCAAAATTAGTTTTTCAGGAGCTACTGTAGCAAAAGCGGATCAACA
* * *
985043 TGGGAGCTTCTTTCAGTACTTTTGTTGACAAAGCATCCTGCTTAAAGCATTTTTGACACTATTTG
131 TGAGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCCTGCTTAAAGCATTTTTGACACTATTTA
985108 CTCAGAAACGTC-TACTCGAAATTATTTTTTCAGGAGCTACTGTAG
196 CTCAGAAACGTCTTA-TCGAAATTATTTTTT-AGGAGCTACTGTAG
* *
985153 CACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCCTGCTTAAAGCGTTTTTGACACTA
1 CACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCATGCTTAAAGCGTTTTTAACACTA
* *
985218 TTTGCTCAGAAACGTCTACTCGAAATTAGTTTTTCAGGAGCTACTGTAGCAAAAGCGCG-TCAAC
66 TTTGCTCAGAAACATCTACTCAAAATTAGTTTTTCAGGAGCTACTGTAGCAAAAGCG-GATCAAC
* *
985282 ATGAGAGCTTCTTTCAGTACTTTTGCTGACAATGCATCCTGTTTAAAGCATTTTTGACACTATTT
130 ATGAGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCCTGCTTAAAGCATTTTTGACACTATTT
985347 ACTCAGAAACGTCTTATCGAAATTATTTTTTAGGAGCTACTGTAG
195 ACTCAGAAACGTCTTATCGAAATTATTTTTTAGGAGCTACTGTAG
985392 CA
1 CA
985394 AAAGCGAGTC
Statistics
Matches: 226, Mismatches: 13, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
239 16 0.07
240 207 0.92
241 3 0.01
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.35
Consensus pattern (239 bp):
CACGTGAGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCATGCTTAAAGCGTTTTTAACACTA
TTTGCTCAGAAACATCTACTCAAAATTAGTTTTTCAGGAGCTACTGTAGCAAAAGCGGATCAACA
TGAGAGCTTCTTTCAGTACTTTTGCTGACAAAGCATCCTGCTTAAAGCATTTTTGACACTATTTA
CTCAGAAACGTCTTATCGAAATTATTTTTTAGGAGCTACTGTAG
Found at i:985762 original size:95 final size:96
Alignment explanation
Indices: 985449--985847 Score: 464
Period size: 97 Copynumber: 4.2 Consensus size: 96
985439 ATTAACCCTA
* * * * * *
985449 AACCCCAAACTCTAATTTATTTGAGTTTTTACTTAAAAACTCTAAACCCTAAACTCTAATCTAAT
1 AACCCTAAACCCTAATTTATTTGA-TTTTTTCTTAAAAACCCTAAACACTAAACCCTAATCTAAT
* *
985514 TTTTTAAAAATTTATAATTAATTTACTCAAGT
65 TTTTTAAAAAATTATAATTAAATTACTCAAGT
* * * *
985546 AACCTTAAACCCTAATTTATTTAATTTTTCCTTAAAAACCCTTAACACTAAACCCTAATCTAATT
1 AACCCTAAACCCTAATTTATTTGATTTTTTCTTAAAAACCCTAAACACTAAACCCTAATCTAA-T
* *
985611 TTTTTTAAAAATTTTAATTAAATTACTCAAGT
65 TTTTTAAAAAATTATAATTAAATTACTCAAGT
* * *
985643 AACCTTAAACCGC-AATTTATTTGATTTTTTCTTAAAAACCCTTAACACTAAACCCTGATCTAA-
1 AACCCTAAACC-CTAATTTATTTGATTTTTTCTTAAAAACCCTAAACACTAAACCCTAATCTAAT
** *
985706 TTTTTAAAATTTTTTAATTAAATTACTCAAGT
65 TTTTTAAAAAATTATAATTAAATTACTCAAGT
* * * *
985738 AACCCTAAACCCTAATTTAATTGATTTTTTCTTTAAAAACCATAAACACGAAA-CCTAATCCAA-
1 AACCCTAAACCCTAATTTATTTGATTTTTTC-TTAAAAACCCTAAACACTAAACCCTAATCTAAT
* * * ** *
985801 TTTTAAAAAAATTATAATTAATTTAATTGAGA
65 TTTTTAAAAAATTATAATTAAATTACTCAAGT
985833 AACCCTAAACCCTAA
1 AACCCTAAACCCTAA
985848 ACCCTTATTT
Statistics
Matches: 263, Mismatches: 35, Indels: 10
0.85 0.11 0.03
Matches are distributed among these distances:
94 1 0.00
95 102 0.39
96 52 0.20
97 107 0.41
98 1 0.00
ACGTcount: A:0.40, C:0.18, G:0.03, T:0.38
Consensus pattern (96 bp):
AACCCTAAACCCTAATTTATTTGATTTTTTCTTAAAAACCCTAAACACTAAACCCTAATCTAATT
TTTTAAAAAATTATAATTAAATTACTCAAGT
Found at i:989011 original size:89 final size:89
Alignment explanation
Indices: 988860--990680 Score: 1918
Period size: 89 Copynumber: 20.6 Consensus size: 89
988850 AACAGATCAG
* * *
988860 TGAAGATAGCAGATCTAGCCTTCCTATACTGACGGTGAAGCAGATCGAAGACACCAGTCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
* **
988925 TCCTGTAGTGACAGTAGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * *
988949 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTAAAACAGATCGAAGACACCAACCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
*
989014 TCCTGTACTGACAACGGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * * * *
989038 TGAAGATAGCAGATCTTGCCTTCCTATAGTGACGGTAAAGTAAATCGAAGACACTAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
*
989103 TCCTGTACTGACAGCGGAGCAAAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * *
989127 TGAAGATAGTAAATTTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGTCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
* * *
989192 TCTTGTATTGACAGCGAAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* *
989216 AGAAGATAGCAGATCTTGCCTTCCTGTACTGA-GGTGAAGCAGATCGAAGACACCAGCTTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
*
989280 TTCTGTACTGACAGCGGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * * *
989304 TGAAGATAGTAGATCTTACCTTCCGGTACTGACGATGAAGCAGATCGAAGACACTAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
** *
989369 TCCTGTACTGACAGTAGAGTAGA-
66 TCCTGTACTGACAGCGGAGCAGAC
* * ** * * *
989392 TTACAAATAGCAGATCTTGCCTTCCTGTACTGACGACGAAGCAGATTGAAGACACTAACCTTGCC
1 TGA-AGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCC
989457 TTCCTGTACTGACAGCGGAGCAGAC
65 TTCCTGTACTGACAGCGGAGCAGAC
* * *
989482 TGAAGATAGCAAATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAATACACTAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
989547 TCTTGTACTGACAGCAGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * * * *
989571 TGAAGGTAGCAGATCTTGCCTTCCTGTACTAACGGCGAAGTAGATCAAAGACACCAGCCTTGTCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
989636 TCCTGTACTGACAGCGGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * * * *
989660 TGAAGATAGAAAATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACTAACCTTACCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
989725 TCCTGTACTCACAACGGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * * *
989749 TGAAGATAGTAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCAAAAACACCAGCCTTGCTT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
* * *
989814 TCCTATAATGACAGCGGAGCATAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * * *
989838 TGAAGATAGCAGATCTTGCATTCCTATACTGACGATGAAGCAGATTGAAGACACCA---TAG--T
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
* ** *** ** *
989898 T--TGCAACAAAGCAGTTAAAAAGAT
66 TCCTG-TACTGA-CAGCGGAGCAGAC
* * * * * * ****
989922 TGAAGCTCCAACAATGAATCTT-ACTTCC-CTA-AG-CAGTAGTGGAGCAGATCGAAGATGGTGA
1 TGAAGAT--AGC-A-G-ATCTTGCCTTCCTGTACTGAC-G--GTGAAGCAGATCGAAGA-CACCA
** ** * * * *
989983 ATCTTATCTTCC--CA-AGATAGTGGAG-A-A-
57 GCCTTGCCTTCCTGTACTGACAGCGGAGCAGAC
* *** * * * * ** * * * *
990010 -GCAGATTTAAG-CCTT-CCTGTACTG-AGGTGAAGCAG-ATC-GA-AG-A--CACCAACTTTGC
1 TGAAGATAGCAGATCTTGCCT-TCCTGTA-CTGACGGTGAAGCAGATCGAAGACACCAGCCTTGC
990065 CTTCCTGTACTGACAGCGGAGCAGAC
64 CTTCCTGTACTGACAGCGGAGCAGAC
* * * * *
990091 TGAAGATAGTAGATCTTGCCTTCCGGTACTGACGATGAAGCAGATCGAAGACACTAGCCTTGCTT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
*
990156 TCCTGTACTGACAGCGGAGCAGAT
66 TCCTGTACTGACAGCGGAGCAGAC
* ** * *
990180 TAAAGATAGCAGATCTTGCCTTCCTACACTGACGGCGAAGCAGATCGAAGACACCAACCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
990245 TCCTGTACTGACAGCGGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * * * * *
990269 TGAAGATAGTAAATCTTGCCCTCCTATACTGACGGCGAAGCAGATCGAATACACTAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
*
990334 TCCTGTACTGACAGCAGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* *
990358 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGATACCAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
990423 TCCTGTACTGACAGCGGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * * * * *
990447 TGAAGATAGCAAATCTTGCCTTCCTGTACTGGCGGCGAAGCAGATCAAAGACACTAACCTTACCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
*
990512 TCCTGTACTGATAGCGGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * *
990536 TGAAGATAGTAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAAACACCAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
* * * *
990601 TCCTATAATGACAACGGAGCATAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * *
990625 TGAAGATAGCAGATCTTGCATTCCTATACTGACGGCGAAGCAAATCGAAGACACCA
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCA
990681 TAGTTTGCAA
Statistics
Matches: 1432, Mismatches: 258, Indels: 84
0.81 0.15 0.05
Matches are distributed among these distances:
75 9 0.01
77 1 0.00
78 9 0.01
79 2 0.00
80 3 0.00
81 7 0.00
82 12 0.01
83 14 0.01
84 23 0.02
85 3 0.00
86 7 0.00
87 8 0.01
88 99 0.07
89 1222 0.85
90 3 0.00
91 4 0.00
92 3 0.00
93 1 0.00
94 2 0.00
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (89 bp):
TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCT
TCCTGTACTGACAGCGGAGCAGAC
Found at i:989159 original size:178 final size:178
Alignment explanation
Indices: 988860--991289 Score: 2427
Period size: 178 Copynumber: 13.8 Consensus size: 178
988850 AACAGATCAG
* * * *
988860 TGAAGATAGCAGATCTAGCCTTCCTATACTGACGGTGAAGCAGATCGAAGACACCAGTCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* ** * * *
988925 TCCTGTAGTGACAGTAGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTAAAAC
66 TCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGTACTGACGGTGAAGC
* *
988990 AGATCGAAGACACCAACCTTGCCTTCCTGTACTGACAACGGAGCAGAC
131 AGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGAC
* * ** * * *
989038 TGAAGATAGCAGATCTTGCCTTCCTATAGTGACGGTAAAGTAAATCGAAGACACTAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * *
989103 TCCTGTACTGACAGCGGAGCAAACTGAAGATAGTAAATTTTGCCTTCCTGTACTGACGGTGAAGC
66 TCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGTACTGACGGTGAAGC
* * * *
989168 AGATCGAAGACACCAGTCTTGCCTTCTTGTATTGACAGCGAAGCAGAC
131 AGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGAC
* * *
989216 AGAAGATAGCAGATCTTGCCTTCCTGTACTGA-GGTGAAGCAGATCGAAGACACCAGCTTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * * * * *
989280 TTCTGTACTGACAGCGGAGCAGACTGAAGATAGTAGATCTTACCTTCCGGTACTGACGATGAAGC
66 TCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGTACTGACGGTGAAGC
* ** *
989345 AGATCGAAGACACTAGCCTTGCCTTCCTGTACTGACAGTAGAGTAGA-
131 AGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGAC
* * * * * *
989392 TTACAAATAGCAGATCTTGCCTTCCTGTACTGACGACGAAGCAGATTGAAGACACTAACCTTGCC
1 TGA-AGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCC
989457 TTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGTACTGACGGTGAAG
65 TTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGTACTGACGGTGAAG
* * * *
989522 CAGATCGAATACACTAGCCTTGCCTTCTTGTACTGACAGCAGAGCAGAC
130 CAGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGAC
* * * * *
989571 TGAAGGTAGCAGATCTTGCCTTCCTGTACTAACGGCGAAGTAGATCAAAGACACCAGCCTTGTCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
989636 TCCTGTACTGACAGCGGAGCAGACTGAAGATAGAAAATCTTGCCTTCCTGTACTGACGGCGAAGC
66 TCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGTACTGACGGTGAAGC
* * * * *
989701 AGATCGAAGACACTAACCTTACCTTCCTGTACTCACAACGGAGCAGAC
131 AGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGAC
* * * * * *
989749 TGAAGATAGTAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCAAAAACACCAGCCTTGCTT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * * * * * *
989814 TCCTATAATGACAGCGGAGCATACTGAAGATAGCAGATCTTGCATTCCTATACTGACGATGAAGC
66 TCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGTACTGACGGTGAAGC
* * * ** *** ** *
989879 AGATTGAAGACACCA---TAG--TT--TGCAACAAAGCAGTTAAAAAGAT
131 AGATCGAAGACACCAGCCTTGCCTTCCTG-TACTGA-CAGCGGAGCAGAC
* * * * * *
989922 TGAAGCTCCAACAATGAATCTT-ACTTCCCT-AAGCAGTA-GTG-G-AGCAGATCGAAG--A--T
1 TGAAGAT--AGC-A-G-ATCTTGCCTT-CCTGTA-CTG-ACG-GCGAAGCAGATCGAAGACACCA
* ** * ** * * * *
989978 G--GTG-AAT-CT-TATCT-TC--CCAAG-ATAGTGGAGA-AGCAGAT-TTAAGCCTTCCTGTAC
57 GCCTTGCCTTCCTGTA-CTGACAGCGGAGCAGACTGAAGATAGCAAATCTT--GCCTTCCTGTAC
* *
990032 TGA-GGTGAAGCAGATCGAAGACACCAACTTTGCCTTCCTGTACTGACAGCGGAGCAGAC
119 TGACGGTGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGAC
* * ** * *
990091 TGAAGATAGTAGATCTTGCCTTCCGGTACTGACGATGAAGCAGATCGAAGACACTAGCCTTGCTT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * * ** *
990156 TCCTGTACTGACAGCGGAGCAGATTAAAGATAGCAGATCTTGCCTTCCTACACTGACGGCGAAGC
66 TCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGTACTGACGGTGAAGC
*
990221 AGATCGAAGACACCAACCTTGCCTTCCTGTACTGACAGCGGAGCAGAC
131 AGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGAC
* * * * * *
990269 TGAAGATAGTAAATCTTGCCCTCCTATACTGACGGCGAAGCAGATCGAATACACTAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * *
990334 TCCTGTACTGACAGCAGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGC
66 TCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGTACTGACGGTGAAGC
*
990399 AGATCGAAGATACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGAC
131 AGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGAC
* * * * * *
990447 TGAAGATAGCAAATCTTGCCTTCCTGTACTGGCGGCGAAGCAGATCAAAGACACTAACCTTACCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * * *
990512 TCCTGTACTGATAGCGGAGCAGACTGAAGATAGTAGATCTTGCCTTCCTGTACTGACAGTGAAGC
66 TCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGTACTGACGGTGAAGC
* * * * *
990577 AGATCGAAAACACCAGCCTTGCCTTCCTATAATGACAACGGAGCATAC
131 AGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGAC
* * * *
990625 TGAAGATAGCAGATCTTGCATTCCTATACTGACGGCGAAGCAAATCGAAGACACCA---TAG--T
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* ** *** ** * * * * * *
990685 T--TGCAACAAAGCAGTTAAAAAGATTGAAGCTCCAACAATGAATCTT-ACTTCC-CTA-AG-CA
66 TCCTG-TACTGA-CAGCGGAGCAGACTGAAGAT--AGC-A--AATCTTGCCTTCCTGTACTGAC-
* * * ** ** * * *
990744 GTAGTGGAGCAGATCGAAG--A--TG--GTG-AAT-CT-TATCTTTC--C-AAG-ATAG
123 G--GTGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTGTA-CTGACAGCGGAGCAGAC
* * * *
990790 TGGAGA-AGCAGAT-TTAAGCCTTCTTGTACTGA-GGTGAAGCAGATCGAAGACACCAGCTTTGC
1 TGAAGATAGCAGATCTT--GCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGC
* * * *
990852 CTTCCTGTACTGACAGTGGAGCAGACTGAAGATAGTAAATCTTGCCTTCCGGTACTGACGATGAA
64 CTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGTACTGACGGTGAA
* * * * *
990917 GCAGATCGAAGACACTAGTCTTACTTTCCTGTACTGACAGCGGAGCAGAT
129 GCAGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGAC
* * * *
990967 TAAAGATAGCAGATCTTGCCTTCCTGCACTGACGGCGAAGCAGATCGAAGACACCAACTTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
991032 TCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTATACTGACGGTGAAGC
66 TCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGTACTGACGGTGAAGC
* * * *
991097 AGATCGAATACACTAGCCTTGCCTTCCTGTACTGATAGCAGAGCAGAC
131 AGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGAC
*
991145 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGATACCAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* * * * * *
991210 TCCTGTACTGACAGCGGAGCATACTGAAGATACCAGATCTTGCATTCCTATACTGACGGCGAAGC
66 TCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGTACTGACGGTGAAGC
991275 AGATCGAAGACACCA
131 AGATCGAAGACACCA
991290 TAGTTTGCAA
Statistics
Matches: 1860, Mismatches: 307, Indels: 170
0.80 0.13 0.07
Matches are distributed among these distances:
163 5 0.00
164 73 0.04
165 77 0.04
166 9 0.00
167 11 0.01
168 6 0.00
169 40 0.02
170 8 0.00
171 15 0.01
172 8 0.00
173 39 0.02
174 6 0.00
175 8 0.00
176 10 0.01
177 224 0.12
178 1313 0.71
179 8 0.00
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (178 bp):
TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCCT
TCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGTACTGACGGTGAAGC
AGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGAC
Found at i:990386 original size:787 final size:787
Alignment explanation
Indices: 989233--991287 Score: 3653
Period size: 787 Copynumber: 2.6 Consensus size: 787
989223 AGCAGATCTT
*
989233 GCCTTCCTGTACTGAGGTGAAGCAGATCGAAGACACCAGCTTTGCCTTTCTGTACTGACAGCGGA
1 GCCTTCCTGTACTGAGGTGAAGCAGATCGAAGACACCAGCTTTGCCTTCCTGTACTGACAGCGGA
*
989298 GCAGACTGAAGATAGTAGATCTTACCTTCCGGTACTGACGATGAAGCAGATCGAAGACACTAGCC
66 GCAGACTGAAGATAGTAGATCTTGCCTTCCGGTACTGACGATGAAGCAGATCGAAGACACTAGCC
* ** * *
989363 TTGCCTTCCTGTACTGACAGTAGAGTAGATTACAA-ATAGCAGATCTTGCCTTCCTGTACTGACG
131 TTGCTTTCCTGTACTGACAGCGGAGCAGATTA-AAGATAGCAGATCTTGCCTTCCTGCACTGACG
* * *
989427 ACGAAGCAGATTGAAGACACTAACCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGC
195 GCGAAGCAGATCGAAGACACCAACCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGC
* *
989492 AAATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAATACACTAGCCTTGCCTTCTTGTACTG
260 AAATCTTGCCTTCCTATACTGACGGTGAAGCAGATCGAATACACTAGCCTTGCCTTCCTGTACTG
* * * *
989557 ACAGCAGAGCAGACTGAAGGTAGCAGATCTTGCCTTCCTGTACTAACGGCGAAGTAGATCAAAGA
325 ACAGCAGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGA
* * *
989622 CACCAGCCTTGTCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGAAAATCTTGCCTTCCTGT
390 TACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGT
989687 ACTGACGGCGAAGCAGATCGAAGACACTAACCTTACCTTCCTGTACTCACAACGGAGCAGACTGA
455 ACTGACGGCGAAGCAGATCGAAGACACTAACCTTACCTTCCTGTACTCACAACGGAGCAGACTGA
*
989752 AGATAGTAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCAAAAACACCAGCCTTGCTTTCC
520 AGATAGTAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCAAAAACACCAGCCTTGCCTTCC
* * *
989817 TATAATGACAGCGGAGCATACTGAAGATAGCAGATCTTGCATTCCTATACTGACGATGAAGCAGA
585 TATAATGACAACGGAGCATACTGAAGATAGCAGATCTTGCATTCCTATACTGACGACGAAGCAAA
*
989882 TTGAAGACACCATAGTTTGCAACAAAGCAGTTAAAAAGATTGAAGCTCCAACAATGAATCTTACT
650 TCGAAGACACCATAGTTTGCAACAAAGCAGTTAAAAAGATTGAAGCTCCAACAATGAATCTTACT
989947 TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGC
715 TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGC
990012 AGATTTAA
780 AGATTTAA
*
990020 GCCTTCCTGTACTGAGGTGAAGCAGATCGAAGACACCAACTTTGCCTTCCTGTACTGACAGCGGA
1 GCCTTCCTGTACTGAGGTGAAGCAGATCGAAGACACCAGCTTTGCCTTCCTGTACTGACAGCGGA
990085 GCAGACTGAAGATAGTAGATCTTGCCTTCCGGTACTGACGATGAAGCAGATCGAAGACACTAGCC
66 GCAGACTGAAGATAGTAGATCTTGCCTTCCGGTACTGACGATGAAGCAGATCGAAGACACTAGCC
*
990150 TTGCTTTCCTGTACTGACAGCGGAGCAGATTAAAGATAGCAGATCTTGCCTTCCTACACTGACGG
131 TTGCTTTCCTGTACTGACAGCGGAGCAGATTAAAGATAGCAGATCTTGCCTTCCTGCACTGACGG
*
990215 CGAAGCAGATCGAAGACACCAACCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGTA
196 CGAAGCAGATCGAAGACACCAACCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCA
* *
990280 AATCTTGCCCTCCTATACTGACGGCGAAGCAGATCGAATACACTAGCCTTGCCTTCCTGTACTGA
261 AATCTTGCCTTCCTATACTGACGGTGAAGCAGATCGAATACACTAGCCTTGCCTTCCTGTACTGA
990345 CAGCAGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAT
326 CAGCAGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAT
990410 ACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGTA
391 ACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGTA
* * * * *
990475 CTGGCGGCGAAGCAGATCAAAGACACTAACCTTACCTTCCTGTACTGATAGCGGAGCAGACTGAA
456 CTGACGGCGAAGCAGATCGAAGACACTAACCTTACCTTCCTGTACTCACAACGGAGCAGACTGAA
*
990540 GATAGTAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAAACACCAGCCTTGCCTTCCT
521 GATAGTAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCAAAAACACCAGCCTTGCCTTCCT
*
990605 ATAATGACAACGGAGCATACTGAAGATAGCAGATCTTGCATTCCTATACTGACGGCGAAGCAAAT
586 ATAATGACAACGGAGCATACTGAAGATAGCAGATCTTGCATTCCTATACTGACGACGAAGCAAAT
990670 CGAAGACACCATAGTTTGCAACAAAGCAGTTAAAAAGATTGAAGCTCCAACAATGAATCTTACTT
651 CGAAGACACCATAGTTTGCAACAAAGCAGTTAAAAAGATTGAAGCTCCAACAATGAATCTTACTT
*
990735 CCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTCCAAGATAGTGGAGAAGCA
716 CCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCA
990800 GATTTAA
781 GATTTAA
* *
990807 GCCTTCTTGTACTGAGGTGAAGCAGATCGAAGACACCAGCTTTGCCTTCCTGTACTGACAGTGGA
1 GCCTTCCTGTACTGAGGTGAAGCAGATCGAAGACACCAGCTTTGCCTTCCTGTACTGACAGCGGA
* *
990872 GCAGACTGAAGATAGTAAATCTTGCCTTCCGGTACTGACGATGAAGCAGATCGAAGACACTAGTC
66 GCAGACTGAAGATAGTAGATCTTGCCTTCCGGTACTGACGATGAAGCAGATCGAAGACACTAGCC
*
990937 TTACTTTCCTGTACTGACAGCGGAGCAGATTAAAGATAGCAGATCTTGCCTTCCTGCACTGACGG
131 TTGCTTTCCTGTACTGACAGCGGAGCAGATTAAAGATAGCAGATCTTGCCTTCCTGCACTGACGG
*
991002 CGAAGCAGATCGAAGACACCAACTTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCA
196 CGAAGCAGATCGAAGACACCAACCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCA
991067 AATCTTGCCTTCCTATACTGACGGTGAAGCAGATCGAATACACTAGCCTTGCCTTCCTGTACTGA
261 AATCTTGCCTTCCTATACTGACGGTGAAGCAGATCGAATACACTAGCCTTGCCTTCCTGTACTGA
*
991132 TAGCAGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAT
326 CAGCAGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAT
* * * * *
991197 ACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCATACTGAAGATACCAGATCTTGCATTCCTATA
391 ACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGTA
991262 CTGACGGCGAAGCAGATCGAAGACAC
456 CTGACGGCGAAGCAGATCGAAGACAC
991288 CATAGTTTGC
Statistics
Matches: 1211, Mismatches: 56, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
786 2 0.00
787 1209 1.00
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (787 bp):
GCCTTCCTGTACTGAGGTGAAGCAGATCGAAGACACCAGCTTTGCCTTCCTGTACTGACAGCGGA
GCAGACTGAAGATAGTAGATCTTGCCTTCCGGTACTGACGATGAAGCAGATCGAAGACACTAGCC
TTGCTTTCCTGTACTGACAGCGGAGCAGATTAAAGATAGCAGATCTTGCCTTCCTGCACTGACGG
CGAAGCAGATCGAAGACACCAACCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCA
AATCTTGCCTTCCTATACTGACGGTGAAGCAGATCGAATACACTAGCCTTGCCTTCCTGTACTGA
CAGCAGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAT
ACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCCTTCCTGTA
CTGACGGCGAAGCAGATCGAAGACACTAACCTTACCTTCCTGTACTCACAACGGAGCAGACTGAA
GATAGTAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCAAAAACACCAGCCTTGCCTTCCT
ATAATGACAACGGAGCATACTGAAGATAGCAGATCTTGCATTCCTATACTGACGACGAAGCAAAT
CGAAGACACCATAGTTTGCAACAAAGCAGTTAAAAAGATTGAAGCTCCAACAATGAATCTTACTT
CCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCA
GATTTAA
Found at i:990962 original size:89 final size:89
Alignment explanation
Indices: 990807--991289 Score: 689
Period size: 89 Copynumber: 5.4 Consensus size: 89
990797 GCAGATTTAA
* * * *
990807 GCCTTCTTGTACTGA-GGTGAAGCAGATCGAAGACACCAGCTTTGCCTTCCTGTACTGACAGTGG
1 GCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGG
* *
990871 AGCAGACTGAAGATAGTAAATCTT
66 AGCAGACTGAAGATAGCAGATCTT
* ** * * * *
990895 GCCTTCCGGTACTGACGATGAAGCAGATCGAAGACACTAGTCTTACTTTCCTGTACTGACAGCGG
1 GCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGG
* *
990960 AGCAGATTAAAGATAGCAGATCTT
66 AGCAGACTGAAGATAGCAGATCTT
* * *
990984 GCCTTCCTGCACTGACGGCGAAGCAGATCGAAGACACCAACTTTGCCTTCCTGTACTGACAGCGG
1 GCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGG
*
991049 AGCAGACTGAAGATAGCAAATCTT
66 AGCAGACTGAAGATAGCAGATCTT
* * * * * *
991073 GCCTTCCTATACTGACGGTGAAGCAGATCGAATACACTAGCCTTGCCTTCCTGTACTGATAGCAG
1 GCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGG
991138 AGCAGACTGAAGATAGCAGATCTT
66 AGCAGACTGAAGATAGCAGATCTT
*
991162 GCCTTCCTGTACTGACGGCGAAGCAGATCGAAGATACCAGCCTTGCCTTCCTGTACTGACAGCGG
1 GCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGG
* *
991227 AGCATACTGAAGATACCAGATCTT
66 AGCAGACTGAAGATAGCAGATCTT
* *
991251 GCATTCCTATACTGACGGCGAAGCAGATCGAAGACACCA
1 GCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCA
991290 TAGTTTGCAA
Statistics
Matches: 346, Mismatches: 48, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
88 13 0.04
89 333 0.96
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.23
Consensus pattern (89 bp):
GCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCTTGCCTTCCTGTACTGACAGCGG
AGCAGACTGAAGATAGCAGATCTT
Found at i:991266 original size:45 final size:44
Alignment explanation
Indices: 988860--990680 Score: 757
Period size: 44 Copynumber: 41.2 Consensus size: 44
988850 AACAGATCAG
* * * * *
988860 TGAAGATAGCAGATCTAGCCTTCCTATACTGACGGTGAAGCAGA
1 TGAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * *
988904 TCGAAGACACCAG-TCTTGCCTTCCTGTAGTGACAG-TAGAGCAGA
1 T-GAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGA-AGCAGA
* * ** *
988948 CTGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTAAAACAGA
1 -TGAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * *
988993 TCGAAGACACCA-ACCTTGCCTTCCTGTACTGACAACGGAGCAGA
1 T-GAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * * ** * *
989037 CTGAAGATAGCAGATCTTGCCTTCCTATAGTGACGGTAAAGTAAA
1 -TGAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * * *
989082 TCGAAGACACTAG-CCTTGCCTTCCTGTACTGACAGCGGAGCAAA
1 T-GAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
** * * * *
989126 CTGAAGATAGTAAATTTTGCCTTCCTGTACTGACGGTGAAGCAGA
1 -TGAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * *
989171 TCGAAGACACCAG-TCTTGCCTTCTTGTATTGACAGCGAAGCAGA
1 T-GAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * *
989215 CAGAAGATAGCAGATCTTGCCTTCCTGTACTGA-GGTGAAGCAGA
1 -TGAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * *
989259 TCGAAGACACCAGCT-TTGCCTTTCTGTACTGACAGCGGAGCAGA
1 T-GAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
** * * *
989303 CTGAAGATAGTAGATCTTACCTTCCGGTACTGAC-GATGAAGCAGA
1 -TGAAGATACCAGATCTTGCCTTCCTGTACTGACAG-CGAAGCAGA
* * * * *
989348 TCGAAGACACTAG-CCTTGCCTTCCTGTACTGACAG-TAGAGTAGA
1 T-GAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGA-AGCAGA
* * *
989392 TTACAAATAGCAGATCTTGCCTTCCTGTACTGAC-GACGAAGCAGA
1 TGA-AGATACCAGATCTTGCCTTCCTGTACTGACAG-CGAAGCAGA
* * * *
989437 TTGAAGACACTA-ACCTTGCCTTCCTGTACTGACAGCGGAGCAGA
1 -TGAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * *
989481 CTGAAGATAGCAAATCTTGCCTTCCTGTACTGACGGTGAAGCAGA
1 -TGAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * * *
989526 TCGAATACACTAG-CCTTGCCTTCTTGTACTGACAGC-AGAGCAGA
1 T-GAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGA-AGCAGA
* * * * *
989570 CTGAAGGTAGCAGATCTTGCCTTCCTGTACTAACGGCGAAGTAGA
1 -TGAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * * *
989615 TCAAAGACACCAG-CCTTGTCTTCCTGTACTGACAGCGGAGCAGA
1 T-GAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
** * *
989659 CTGAAGATAGAAAATCTTGCCTTCCTGTACTGACGGCGAAGCAGA
1 -TGAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * * * * *
989704 TCGAAGACACTA-ACCTTACCTTCCTGTACTCACAACGGAGCAGA
1 T-GAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
** *
989748 CTGAAGATAGTAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGA
1 -TGAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * * * * * * *
989793 TCAAAAACACCAG-CCTTGCTTTCCTATAATGACAGCGGAGCATA
1 T-GAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * *
989837 CTGAAGATAGCAGATCTTGCATTCCTATACTGAC-GATGAAGCAGA
1 -TGAAGATACCAGATCTTGCCTTCCTGTACTGACAG-CGAAGCAGA
* * ** ** ** **
989882 TTGAAGACACCATAGT-TTG-C-AAC---AAAG-CAGTTAAAAAGA
1 -TGAAGATACCAGA-TCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * * * * * *
989921 TTGAAGCTCCAACAATGAATCTT-ACTTCC-CTA-AGCAGTAGTGGAGCAGA
1 -TGAAGAT---ACCA-G-ATCTTGCCTTCCTGTACTG-A-CAGCGAAGCAGA
*** ** * * * *
989970 TCGAAGAT-GGTGAATCTTATCTTCC--CA-AGATAGTG--G-AGA
1 T-GAAGATACCAG-ATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * ** ** * * *
990009 AGCAGAT-TTA-A----GCCTTCCTGTACTGAGGTGAAGCAG-A-T
1 TGAAGATACCAGATCTTGCCTTCCTGTACTGA-CAG-CGAAGCAGA
* * ** * * * * * *
990047 CGAAGACACCAACTTTGCCTT-CCTGTACTG-ACAG-CGGAGCAG-A-C
1 TGAAGATACC-A-GAT--CTTGCCT-TCCTGTACTGACAGCGAAGCAGA
** * *
990091 TGAAGATAGTAGATCTTGCCTTCCGGTACTGAC-GATGAAGCAGA
1 TGAAGATACCAGATCTTGCCTTCCTGTACTGACAG-CGAAGCAGA
* * * * *
990135 TCGAAGACACTAG-CCTTGCTTTCCTGTACTGACAGCGGAGCAGA
1 T-GAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * ** *
990179 TTAAAGATAGCAGATCTTGCCTTCCTACACTGACGGCGAAGCAGA
1 -TGAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * *
990224 TCGAAGACACCA-ACCTTGCCTTCCTGTACTGACAGCGGAGCAGA
1 T-GAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
** * * * *
990268 CTGAAGATAGTAAATCTTGCCCTCCTATACTGACGGCGAAGCAGA
1 -TGAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * *
990313 TCGAATACACTAG-CCTTGCCTTCCTGTACTGACAGC-AGAGCAGA
1 T-GAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGA-AGCAGA
* *
990357 CTGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGA
1 -TGAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* *
990402 TCGAAGATACCAG-CCTTGCCTTCCTGTACTGACAGCGGAGCAGA
1 T-GAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * *
990446 CTGAAGATAGCAAATCTTGCCTTCCTGTACTGGCGGCGAAGCAGA
1 -TGAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * * * * *
990491 TCAAAGACACTA-ACCTTACCTTCCTGTACTGATAGCGGAGCAGA
1 T-GAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
** *
990535 CTGAAGATAGTAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGA
1 -TGAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * * * * * *
990580 TCGAAAACACCAG-CCTTGCCTTCCTATAATGACAACGGAGCATA
1 T-GAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
* * * * *
990624 CTGAAGATAGCAGATCTTGCATTCCTATACTGACGGCGAAGCAAA
1 -TGAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
*
990669 TCGAAGACACCA
1 T-GAAGATACCA
990681 TAGTTTGCAA
Statistics
Matches: 1313, Mismatches: 357, Indels: 213
0.70 0.19 0.11
Matches are distributed among these distances:
32 5 0.00
34 1 0.00
35 2 0.00
36 2 0.00
37 1 0.00
38 9 0.01
39 18 0.01
40 11 0.01
41 7 0.01
42 13 0.01
43 26 0.02
44 603 0.46
45 582 0.44
46 9 0.01
47 7 0.01
48 5 0.00
49 12 0.01
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (44 bp):
TGAAGATACCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGA
Found at i:991415 original size:609 final size:610
Alignment explanation
Indices: 990207--991418 Score: 2039
Period size: 609 Copynumber: 2.0 Consensus size: 610
990197 GCCTTCCTAC
990207 ACTGACGGCGAAGCAGATCGAAGACACCAACCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGA
1 ACTGACGGCGAAGCAGATCGAAGACACCAACCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGA
* * * *
990272 AGATAGTAAATCTTGCCCTCCTATACTGACGGCGAAGCAGATCGAATACACTAGCCTTGCCTTCC
66 AGATAGTAAATCTTGCCCTCCGATACTGACGACGAAGCAGATCGAAGACACTAGCCTTACCTTCC
* *
990337 TGTACTGACAGCAGAGCAGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGA
131 TGTACTGACAGCAGAGCAGACTAAAGATAGCAGATCTTGCCTTCCTGCACTGACGGCGAAGCAGA
* *
990402 TCGAAGATACCAGCCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCC
196 TCGAAGACACCAACCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCC
* * *
990467 TTCCTGTACTGGCGGCGAAGCAGATCAAAGACACTAACCTTACCTTCCTGTACTGATAGCGGAGC
261 TTCCTATACTGACGGCGAAGCAGATCAAAGACACTAACCTTACCTTCCTGTACTGATAGCAGAGC
* *
990532 AGACTGAAGATAGTAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCGAAAACACCAGCCTT
326 AGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAAACACCAGCCTT
*
990597 GCCTTCCTATAATGACAACGGAGCATACTGAAGATAGCAGATCTTGCATTCCTATACTGACGGCG
391 GCCTTCCTATAATGACAACGGAGCATACTGAAGATACCAGATCTTGCATTCCTATACTGACGGCG
*
990662 AAGCAAATCGAAGACACCATAGTTTGCAACAAAGCAGTTAAAAAGATTGAAGCTCCAACAATGAA
456 AAGCAAATCGAAGACACCATAGTTTGCAACAAAGCAGTTAAAAAGATTAAAGCTCCAACAATGAA
* *
990727 TCTTACTTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTTCCAAGATAGTG
521 TCTTACTTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGCTGAATCTTATCTTCCCAAGATAGTG
990792 GAGAAGCAGATTTAAGCCTTCTTGT
586 GAGAAGCAGATTTAAGCCTTCTTGT
* * * *
990817 ACTGA-GGTGAAGCAGATCGAAGACACCAGCTTTGCCTTCCTGTACTGACAGTGGAGCAGACTGA
1 ACTGACGGCGAAGCAGATCGAAGACACCAACCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGA
* * * * *
990881 AGATAGTAAATCTTGCCTTCCGGTACTGACGATGAAGCAGATCGAAGACACTAGTCTTACTTTCC
66 AGATAGTAAATCTTGCCCTCCGATACTGACGACGAAGCAGATCGAAGACACTAGCCTTACCTTCC
* *
990946 TGTACTGACAGCGGAGCAGATTAAAGATAGCAGATCTTGCCTTCCTGCACTGACGGCGAAGCAGA
131 TGTACTGACAGCAGAGCAGACTAAAGATAGCAGATCTTGCCTTCCTGCACTGACGGCGAAGCAGA
*
991011 TCGAAGACACCAACTTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCC
196 TCGAAGACACCAACCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCC
* * * * *
991076 TTCCTATACTGACGGTGAAGCAGATCGAATACACTAGCCTTGCCTTCCTGTACTGATAGCAGAGC
261 TTCCTATACTGACGGCGAAGCAGATCAAAGACACTAACCTTACCTTCCTGTACTGATAGCAGAGC
* * *
991141 AGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGATACCAGCCTT
326 AGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAAACACCAGCCTT
* * *
991206 GCCTTCCTGTACTGACAGCGGAGCATACTGAAGATACCAGATCTTGCATTCCTATACTGACGGCG
391 GCCTTCCTATAATGACAACGGAGCATACTGAAGATACCAGATCTTGCATTCCTATACTGACGGCG
*
991271 AAGCAGATCGAAGACACCATAGTTTGCAACAAAGCAGTTAAAAAGATTAAAGCTCCAACAATGAA
456 AAGCAAATCGAAGACACCATAGTTTGCAACAAAGCAGTTAAAAAGATTAAAGCTCCAACAATGAA
991336 TCTTACTTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGCTGAATCTTATCTTCCCAAGATAGTG
521 TCTTACTTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGCTGAATCTTATCTTCCCAAGATAGTG
*
991401 GAGAAGCGGATTTAAGCC
586 GAGAAGCAGATTTAAGCC
991419 ATTAGTCCTA
Statistics
Matches: 560, Mismatches: 42, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
609 555 0.99
610 5 0.01
ACGTcount: A:0.30, C:0.24, G:0.23, T:0.23
Consensus pattern (610 bp):
ACTGACGGCGAAGCAGATCGAAGACACCAACCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGA
AGATAGTAAATCTTGCCCTCCGATACTGACGACGAAGCAGATCGAAGACACTAGCCTTACCTTCC
TGTACTGACAGCAGAGCAGACTAAAGATAGCAGATCTTGCCTTCCTGCACTGACGGCGAAGCAGA
TCGAAGACACCAACCTTGCCTTCCTGTACTGACAGCGGAGCAGACTGAAGATAGCAAATCTTGCC
TTCCTATACTGACGGCGAAGCAGATCAAAGACACTAACCTTACCTTCCTGTACTGATAGCAGAGC
AGACTGAAGATAGCAGATCTTGCCTTCCTGTACTGACAGCGAAGCAGATCGAAAACACCAGCCTT
GCCTTCCTATAATGACAACGGAGCATACTGAAGATACCAGATCTTGCATTCCTATACTGACGGCG
AAGCAAATCGAAGACACCATAGTTTGCAACAAAGCAGTTAAAAAGATTAAAGCTCCAACAATGAA
TCTTACTTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGCTGAATCTTATCTTCCCAAGATAGTG
GAGAAGCAGATTTAAGCCTTCTTGT
Found at i:991504 original size:132 final size:132
Alignment explanation
Indices: 991343--991831 Score: 762
Period size: 132 Copynumber: 3.7 Consensus size: 132
991333 GAATCTTACT
*
991343 TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGCTGAATCTTATCTTCCCAAGATAGTGGAGAAGC
1 TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGC
* * * * * * *
991408 GGATTTAAGCCATTAGTCCTATCTCCCTAAGTAGTAGTTGAGTGGGTTGACGATTGCAGATTCTA
66 AGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATTCTG
991473 TC
131 TC
* * *
991475 TCCCTAAGTAGTAGTAGAGCAGATCGAAGATGGTGAATATTATCTTCCCAAGATAGTGGAGAAGC
1 TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGC
* *
991540 AGATTTAAGCCATTAGTCATATCTCCCTCAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATTCTG
66 AGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATTCTG
991605 TC
131 TC
* * * * *
991607 TCCCGAAGCAGTAGTGGAGCAGATCGAAAATGGTTAATCTTATCTTCCCAATATAGTGGAGATGC
1 TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGC
*
991672 AGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTAAAGATTGCAGATTCTG
66 AGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATTCTG
991737 TC
131 TC
* * *
991739 TCCCTAAGCAGTATTGGAGCAGATCGAAGATGGTGAATCTTATATTCCCAAGATAGTAGAGAAGC
1 TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGC
* *
991804 ATATTTAAGCCATTAGTCTTATCTCCCT
66 AGATTTAAGCCATTAGTCCTATCTCCCT
991832 GAAGTTGTAG
Statistics
Matches: 323, Mismatches: 34, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
132 323 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGC
AGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTGCAGATTCTG
TC
Found at i:994052 original size:70 final size:70
Alignment explanation
Indices: 993939--994078 Score: 199
Period size: 70 Copynumber: 2.0 Consensus size: 70
993929 TATTTTCAAA
* * * *
993939 CTCAATTTTTAAACGATCTCGAGAATTAAGAAGAGATCGTGTCCTAACTTACTGGGCATGATCAT
1 CTCAAGTTTTAAACGATCTCGAGAAATAAAAAAAGATCGTGTCCTAACTTACTGGGCATGATCAT
994004 TTTTT
66 TTTTT
* * ** *
994009 CTCAAGTTTTAAACGATCTCGGGAAATAAAAAAAGATTGTGTCCTAACTTACTGGGTGTGATCCT
1 CTCAAGTTTTAAACGATCTCGAGAAATAAAAAAAGATCGTGTCCTAACTTACTGGGCATGATCAT
994074 TTTTT
66 TTTTT
994079 AAATCCGAGA
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
70 61 1.00
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (70 bp):
CTCAAGTTTTAAACGATCTCGAGAAATAAAAAAAGATCGTGTCCTAACTTACTGGGCATGATCAT
TTTTT
Found at i:996493 original size:20 final size:20
Alignment explanation
Indices: 996468--996505 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
996458 AAAATTAATA
996468 AAATAAAA-AAATTGTAATTC
1 AAATAAAAGAAATT-TAATTC
996488 AAATAAAAGAAATTTAAT
1 AAATAAAAGAAATTTAAT
996506 AGTAAAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (20 bp):
AAATAAAAGAAATTTAATTC
Found at i:997820 original size:30 final size:29
Alignment explanation
Indices: 997685--997821 Score: 120
Period size: 29 Copynumber: 4.7 Consensus size: 29
997675 AAAATTCAAA
* *
997685 AAAATTACATTTTAACTCCTAAACTTTTC
1 AAAATTACATTTTAGCCCCTAAACTTTTC
* *
997714 AAAATTCCATTTTAACCCCT-AACTTTTTC
1 AAAATTACATTTTAGCCCCTAAAC-TTTTC
*
997743 AAAATTTACATCTT-GACCCCTAATA-TTTT-
1 AAAA-TTACATTTTAG-CCCCTAA-ACTTTTC
**
997772 ATAAATTACATTCAAGCCCCTAAACTTTCTC
1 A-AAATTACATTTTAGCCCCTAAACTTT-TC
*
997803 AAAATTATATTTTAGCCCC
1 AAAATTACATTTTAGCCCC
997822 ATATTTTCCT
Statistics
Matches: 87, Mismatches: 11, Indels: 19
0.74 0.09 0.16
Matches are distributed among these distances:
28 4 0.05
29 44 0.51
30 36 0.41
31 2 0.02
32 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.02, T:0.39
Consensus pattern (29 bp):
AAAATTACATTTTAGCCCCTAAACTTTTC
Found at i:998085 original size:11 final size:11
Alignment explanation
Indices: 998066--998097 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
998056 AACGCAAAAA
998066 AAAAAAACAGC
1 AAAAAAACAGC
*
998077 AAAAGAACAGC
1 AAAAAAACAGC
998088 AAAAAAACAG
1 AAAAAAACAG
998098 AGAGCAGAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.72, C:0.16, G:0.12, T:0.00
Consensus pattern (11 bp):
AAAAAAACAGC
Found at i:998437 original size:15 final size:15
Alignment explanation
Indices: 998417--998452 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
998407 AGGAAAGTAA
998417 AAAGAAGAAAAATAG
1 AAAGAAGAAAAATAG
998432 AAAGAAGAAAAATAG
1 AAAGAAGAAAAATAG
998447 AAAGAA
1 AAAGAA
998453 AAATTGAAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.06
Consensus pattern (15 bp):
AAAGAAGAAAAATAG
Found at i:998451 original size:12 final size:12
Alignment explanation
Indices: 998409--998480 Score: 58
Period size: 12 Copynumber: 5.8 Consensus size: 12
998399 AAGAAGAGAG
*
998409 GAAAGTAAAA-A
1 GAAAGAAAAATA
998420 G-AAGAAAAATA
1 GAAAGAAAAATA
998431 GAAAGAAGAAAAATA
1 G--A-AAGAAAAATA
*
998446 GAAAGAAAAATT
1 GAAAGAAAAATA
* *
998458 GAAGGAAAAAAAA
1 GAAAG-AAAAATA
998471 GAAAGAAAAA
1 GAAAGAAAAA
998481 AAAGGAAAAA
Statistics
Matches: 49, Mismatches: 6, Indels: 11
0.74 0.09 0.17
Matches are distributed among these distances:
10 7 0.14
11 3 0.06
12 18 0.37
13 10 0.20
15 11 0.22
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.07
Consensus pattern (12 bp):
GAAAGAAAAATA
Found at i:998452 original size:27 final size:25
Alignment explanation
Indices: 998415--998480 Score: 89
Period size: 25 Copynumber: 2.6 Consensus size: 25
998405 AGAGGAAAGT
998415 AAAAAG-AAGAAAAATAGAAAGAAGA
1 AAAAAGAAAGAAAAATAGAAAGAA-A
* *
998440 AAAATAGAAAGAAAAATTGAAGGAAA
1 AAAA-AGAAAGAAAAATAGAAAGAAA
998466 AAAAAGAAAGAAAAA
1 AAAAAGAAAGAAAAA
998481 AAAGGAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
25 15 0.41
26 7 0.19
27 15 0.41
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (25 bp):
AAAAAGAAAGAAAAATAGAAAGAAA
Found at i:998649 original size:23 final size:23
Alignment explanation
Indices: 998605--998649 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
998595 AAAAAAAAAA
*
998605 CAAAAAACAGCAGGCCTACAGCC
1 CAAAAAACAGCAGGCCCACAGCC
998628 CAAAAAA-AGCAGGCCCAGCAGC
1 CAAAAAACAGCAGGCCCA-CAGC
998650 AGGCCACAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.44, C:0.33, G:0.20, T:0.02
Consensus pattern (23 bp):
CAAAAAACAGCAGGCCCACAGCC
Found at i:999302 original size:17 final size:17
Alignment explanation
Indices: 999276--999577 Score: 171
Period size: 17 Copynumber: 16.5 Consensus size: 17
999266 CGATACCTCT
999276 TTTC-AAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
*
999292 TTTCAAAAATTTTTCATG
1 TTTCAAAAA-TTTTCGTG
*
999310 TTTTCAAAAAATTTATTGTG
1 -TTTC-AAAAATTT-TCGTG
999330 TTT-AAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
* *
999346 TTTCAAGAATTTTCGTATT
1 TTTCAAAAATTTTCG--TG
* *
999365 TTTAAAAAATTCTCGTG
1 TTTCAAAAATTTTCGTG
* * *
999382 TTT-AAAACTTTTTGCG
1 TTTCAAAAATTTTCGTG
999398 TTATCAAAAAAAATTTTCGTG
1 TT-TC---AAAAATTTTCGTG
* *
999419 TTTCAAAAAATTTCGGG
1 TTTCAAAAATTTTCGTG
* *
999436 TTTTCAAAAAAAAATTTCGGG
1 -TTTC---AAAAATTTTCGTG
*
999457 TTTCAAAAAATTTCGTG
1 TTTCAAAAATTTTCGTG
*
999474 TTTTCAAAAAAAATTTCGTG
1 -TTTC--AAAAATTTTCGTG
*
999494 TTTCAAAGAA-TTTCATG
1 TTTCAAA-AATTTTCGTG
* *
999511 TTTTCAAAAAACAATGTTCTTG
1 -TTTC---AAA-AATTTTCGTG
*
999533 TTTAAAAAATTTTCGTG
1 TTTCAAAAATTTTCGTG
*
999550 TTTTCAAACAAATTTCGTG
1 -TTTCAAA-AATTTTCGTG
999569 TTTCAAAAA
1 TTTCAAAAA
999578 GAAATTCTCG
Statistics
Matches: 229, Mismatches: 29, Indels: 55
0.73 0.09 0.18
Matches are distributed among these distances:
16 22 0.10
17 69 0.30
18 37 0.16
19 36 0.16
20 27 0.12
21 33 0.14
22 5 0.02
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.43
Consensus pattern (17 bp):
TTTCAAAAATTTTCGTG
Found at i:999311 original size:18 final size:18
Alignment explanation
Indices: 999276--999577 Score: 128
Period size: 18 Copynumber: 16.5 Consensus size: 18
999266 CGATACCTCT
999276 TTTC-AAAA-TTTTCGTG
1 TTTCAAAAATTTTTCGTG
*
999292 TTTCAAAAATTTTTCATG
1 TTTCAAAAATTTTTCGTG
999310 TTTTCAAAAAATTTATT-GTG
1 -TTTC-AAAAATTT-TTCGTG
999330 TTT-AAAAA-TTTTCGTG
1 TTTCAAAAATTTTTCGTG
* *
999346 TTTCAAGAA-TTTTCGTAT
1 TTTCAAAAATTTTTCGT-G
* * *
999364 TTTTAAAAAATTCTCGTG
1 TTTCAAAAATTTTTCGTG
*
999382 TTT-AAAACTTTTTGCGT-
1 TTTCAAAAATTTTT-CGTG
* *
999399 TATCAAAAAAAATTTTCGTG
1 TTTC--AAAAATTTTTCGTG
* *
999419 TTTCAAAAA-ATTTCGGG
1 TTTCAAAAATTTTTCGTG
** *
999436 TTTTCAAAAAAAAATTTCGGG
1 -TTTC--AAAAATTTTTCGTG
*
999457 TTTCAAAAA-ATTTCGTG
1 TTTCAAAAATTTTTCGTG
**
999474 TTTTCAAAAAAAATTTCGTG
1 -TTTC-AAAAATTTTTCGTG
*
999494 TTTCAAAGAA--TTTCATG
1 TTTCAAA-AATTTTTCGTG
* * *
999511 TTTTCAAAAAACAATGTTCTTG
1 -TTTC--AAAA-ATTTTTCGTG
*
999533 TTT-AAAAAATTTTCGTG
1 TTTCAAAAATTTTTCGTG
*
999550 TTTTCAAACAA-ATTTCGTG
1 -TTTCAAA-AATTTTTCGTG
999569 TTTCAAAAA
1 TTTCAAAAA
999578 GAAATTCTCG
Statistics
Matches: 231, Mismatches: 24, Indels: 61
0.73 0.08 0.19
Matches are distributed among these distances:
15 2 0.01
16 12 0.05
17 58 0.25
18 59 0.26
19 38 0.16
20 44 0.19
21 13 0.06
22 5 0.02
ACGTcount: A:0.35, C:0.11, G:0.11, T:0.43
Consensus pattern (18 bp):
TTTCAAAAATTTTTCGTG
Found at i:999409 original size:21 final size:20
Alignment explanation
Indices: 999385--999500 Score: 84
Period size: 20 Copynumber: 6.0 Consensus size: 20
999375 TCTCGTGTTT
* *
999385 AAAACTTTTTGCGTTATCAAA
1 AAAAATTTTCGCGTT-TCAAA
*
999406 AAAAATTTTCGTGTTTC--A
1 AAAAATTTTCGCGTTTCAAA
*
999424 AAAAA-TTTCGGGTTTTCAAA
1 AAAAATTTTCGCG-TTTCAAA
* *
999444 AAAAAATTTCGGGTTTC--A
1 AAAAATTTTCGCGTTTCAAA
*
999462 AAAAA-TTTCGTGTTTTCAAA
1 AAAAATTTTCGCG-TTTCAAA
*
999482 AAAAA-TTTCGTGTTTCAAA
1 AAAAATTTTCGCGTTTCAAA
999501 GAATTTCATG
Statistics
Matches: 83, Mismatches: 5, Indels: 16
0.80 0.05 0.15
Matches are distributed among these distances:
17 12 0.14
18 20 0.24
19 7 0.08
20 25 0.30
21 19 0.23
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.38
Consensus pattern (20 bp):
AAAAATTTTCGCGTTTCAAA
Found at i:999443 original size:38 final size:38
Alignment explanation
Indices: 999333--999577 Score: 261
Period size: 38 Copynumber: 6.6 Consensus size: 38
999323 TATTGTGTTT
* * * *
999333 AAAAATTTTCGTGTTTCAAGAATTTTCGTATTTT--TA
1 AAAAATTTTCGTGTTTCAAAAAATTTCGTGTTTTCAAA
* ** * * *
999369 AAAAATTCTCGTGTTT-AAAACTTTTTGCGTTATCAAA
1 AAAAATTTTCGTGTTTCAAAAAATTTCGTGTTTTCAAA
*
999406 AAAAATTTTCGTGTTTCAAAAAATTTCGGGTTTTCAAA
1 AAAAATTTTCGTGTTTCAAAAAATTTCGTGTTTTCAAA
* *
999444 AAAAAATTTCGGGTTTCAAAAAATTTCGTGTTTTCAAA
1 AAAAATTTTCGTGTTTCAAAAAATTTCGTGTTTTCAAA
* *
999482 AAAAA-TTTCGTGTTTCAAAGAATTTCATGTTTTCAAA
1 AAAAATTTTCGTGTTTCAAAAAATTTCGTGTTTTCAAA
* *
999519 AAACAATGTTCTTGTTT-AAAAAATTTTCGTGTTTTC-AA
1 AAA-AATTTTCGTGTTTCAAAAAA-TTTCGTGTTTTCAAA
*
999557 ACAAA-TTTCGTGTTTCAAAAA
1 AAAAATTTTCGTGTTTCAAAAA
999578 GAAATTCTCG
Statistics
Matches: 175, Mismatches: 27, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
35 11 0.06
36 23 0.13
37 55 0.31
38 67 0.38
39 19 0.11
ACGTcount: A:0.36, C:0.11, G:0.11, T:0.41
Consensus pattern (38 bp):
AAAAATTTTCGTGTTTCAAAAAATTTCGTGTTTTCAAA
Found at i:999497 original size:75 final size:76
Alignment explanation
Indices: 999401--999577 Score: 252
Period size: 75 Copynumber: 2.3 Consensus size: 76
999391 TTTTGCGTTA
*
999401 TCAAAAAAAATTTTCGTGTTTCAAAAAATTTCGGGTTTTCAAAAAAAAAT-TTCGGGTTTCAAAA
1 TCAAAAAAAA-TTTCGTGTTTCAAAAAATTTCAGGTTTTCAAAAAAAAATGTTCGGGTTT-AAAA
999465 AA-TTTCGTGTTT
64 AATTTTCGTGTTT
* * * **
999477 TCAAAAAAAATTTCGTGTTTCAAAGAATTTCATGTTTTCAAAAAACAATGTTCTTGTTTAAAAAA
1 TCAAAAAAAATTTCGTGTTTCAAAAAATTTCAGGTTTTCAAAAAAAAATGTTCGGGTTTAAAAAA
999542 TTTTCGTGTTT
66 TTTTCGTGTTT
*
999553 TC-AAACAAATTTCGTGTTTCAAAAA
1 TCAAAAAAAATTTCGTGTTTCAAAAA
999578 GAAATTCTCG
Statistics
Matches: 91, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
75 62 0.68
76 29 0.32
ACGTcount: A:0.38, C:0.11, G:0.11, T:0.39
Consensus pattern (76 bp):
TCAAAAAAAATTTCGTGTTTCAAAAAATTTCAGGTTTTCAAAAAAAAATGTTCGGGTTTAAAAAA
TTTTCGTGTTT
Found at i:999597 original size:20 final size:20
Alignment explanation
Indices: 999401--999598 Score: 65
Period size: 20 Copynumber: 10.3 Consensus size: 20
999391 TTTTGCGTTA
*
999401 TCAAAAA-AAATTTTCGTGTT
1 TCAAAAAGAAA-TTTCGTGGT
999421 TC--AAA-AAATTTCG-GGTTT
1 TCAAAAAGAAATTTCGTGG--T
*
999439 TCAAAAAAAAATTTCG-GGTT
1 TCAAAAAGAAATTTCGTGG-T
*
999459 TC--AAA-AAATTTCGTGTTT
1 TCAAAAAGAAATTTCGTG-GT
*
999477 TCAAAAA-AAATTTCGTGTT
1 TCAAAAAGAAATTTCGTGGT
* *
999496 TC--AAAG-AATTTCATGTTT
1 TCAAAAAGAAATTTCGTG-GT
*
999514 TCAAAAA-ACAATGTTC-TTGT
1 TCAAAAAGA-AAT-TTCGTGGT
* * *
999534 T-TAAAA-AATTTTCGTGTTT
1 TCAAAAAGAAATTTCGTG-GT
* *
999553 TC--AAACAAATTTCGTGTT
1 TCAAAAAGAAATTTCGTGGT
999571 TCAAAAAGAAATTCTCGTGGT
1 TCAAAAAGAAATT-TCGTGGT
999592 TCAAAAA
1 TCAAAAA
999599 TTTCCGTATT
Statistics
Matches: 143, Mismatches: 12, Indels: 45
0.71 0.06 0.22
Matches are distributed among these distances:
16 1 0.01
17 27 0.19
18 30 0.21
19 20 0.14
20 35 0.24
21 27 0.19
22 3 0.02
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (20 bp):
TCAAAAAGAAATTTCGTGGT
Found at i:1005237 original size:13 final size:13
Alignment explanation
Indices: 1005219--1005251 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
1005209 ATTATGCCTA
1005219 AAAAAAACAAAAC
1 AAAAAAACAAAAC
1005232 AAAAAAACAAAAC
1 AAAAAAACAAAAC
1005245 AAAAAAA
1 AAAAAAA
1005252 AAAGAAAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAAACAAAAC
Found at i:1005245 original size:18 final size:16
Alignment explanation
Indices: 1005218--1005260 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 16
1005208 TATTATGCCT
1005218 AAAAAAAACAAAACAAA
1 AAAAAAAACAAAA-AAA
1005235 AAAACAAAACAAAAAAA
1 AAAA-AAAACAAAAAAA
1005252 AAAGAAAAA
1 AAA-AAAAA
1005261 ACAAGATGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 14 0.58
18 10 0.42
ACGTcount: A:0.88, C:0.09, G:0.02, T:0.00
Consensus pattern (16 bp):
AAAAAAAACAAAAAAA
Found at i:1005261 original size:11 final size:12
Alignment explanation
Indices: 1005220--1005264 Score: 65
Period size: 13 Copynumber: 3.8 Consensus size: 12
1005210 TTATGCCTAA
1005220 AAAAAACAAAAC
1 AAAAAACAAAAC
1005232 AAAAAAACAAAAC
1 -AAAAAACAAAAC
*
1005245 AAAAAA-AAAAG
1 AAAAAACAAAAC
1005256 AAAAAACAA
1 AAAAAACAA
1005265 GATGAAAACC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
11 10 0.33
12 8 0.27
13 12 0.40
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (12 bp):
AAAAAACAAAAC
Found at i:1005261 original size:18 final size:18
Alignment explanation
Indices: 1005218--1005264 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
1005208 TATTATGCCT
1005218 AAAAAAAACAAAACAAAA
1 AAAAAAAACAAAACAAAA
*
1005236 AAACAAAACAAAA-AAAA
1 AAAAAAAACAAAACAAAA
1005253 AAGAAAAAACAA
1 AA-AAAAAACAA
1005265 GATGAAAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 6 0.23
18 20 0.77
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (18 bp):
AAAAAAAACAAAACAAAA
Found at i:1006319 original size:81 final size:79
Alignment explanation
Indices: 1006133--1007816 Score: 1738
Period size: 81 Copynumber: 21.4 Consensus size: 79
1006123 TTTTTTTTTT
* * * *
1006133 AAATCAACTCATAATGC-AGGAGGTGAGTTGAGCCTCGGGGCACATGCCGAGGTA-T-TTCTCAA
1 AAATCAACTCATATTGCGA-GAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTCTTTTAAA
**
1006195 TTTCTGTTTTTTTAA
65 TTTCTGTTTTTCAAA
* *
1006210 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGGTCACATACCGAGGTATTTCTTTTAAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTA-TTCTTTTAAA
1006275 TTTCTGTTTTTCAAAA
65 TTTCTGTTTTTC-AAA
* * **
1006291 AAATCAACTCATATTGCTATAGGTGAGTTGAGCCTCGGGTCACATAACGAGGTATTTCTTTTAAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTA-TTCTTTTAAA
1006356 TTTCTGTTTTTCAAAA
65 TTTCTGTTTTTC-AAA
* * **
1006372 AAATCAACTCATATTGCTATAGGTGAGTTGAGCCTCGGGTCACATAACGAGGTATTTCTTTTAAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTA-TTCTTTTAAA
1006437 TTTCTGTTTTTCAAAA
65 TTTCTGTTTTTC-AAA
* * **
1006453 AAATCAACTCATATTGCTATAGGTGAGTTGAGCCTCGGGTCACATAACGAGGTATTTCTTTTAAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTA-TTCTTTTAAA
1006518 TTTCTGTTTTTCAAA
65 TTTCTGTTTTTCAAA
* *
1006533 AAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGAC-CATGCCGAGGTATTTCTTTTAAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTA-TTCTTTTAAA
1006596 TTTCTGTTTTTCAAAAAAAA
65 TTTCTGTTTTTC-----AAA
* *
1006616 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC-GGAC-CATGCCGAGGTATT-TAGTTTAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTCT--TTTAA
*
1006678 ATTTCCGTTTTTCAAAA
64 ATTTCTGTTTTTC-AAA
* * *
1006695 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCAC--GCTGAGGTA---TTTTCAAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTCTTTTAAAT
1006755 TTCTGTTTTTCAAAAAAAA
66 TTCTGTTTTTC-----AAA
* * *
1006774 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTTGGGCCACATGCCGAGGTA-TC-TTT-AAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTCTTTTAAAT
* *
1006836 TTCTATTTTTTTAAA
66 TTCT-GTTTTTCAAA
* * *
1006851 AAATGCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCAC--GCTGAGGTA---TTTTCAA
1 AAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTCTTTTAAA
* *
1006911 TTTATGTTTTTTTAAAAA
65 TTTCTG--TTTTT-CAAA
*
1006929 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTTAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTA-TTCTTTTAAA
*
1006994 TTTCTATTTTTCAAA
65 TTTCTGTTTTTCAAA
* * * *
1007009 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCACACGCTGAGGTA-T-TTTTCAAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTCTTTTAAAT
1007072 TTCTGTTTTTC-AA
66 TTCTGTTTTTCAAA
* * * **
1007085 AAATCAACTCATAATGCGAAAAGTGAGTTGAGCCTCGGGTCAC--GTTGAGGTA-T-TTTT-AAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTCTTTTAAAT
*
1007145 TTCTGTTTTTTAAAAAAA
66 TTCTG-TTTTT---CAAA
* * *
1007163 ATCATCATCAACTCATAATGCGAGAGGTGAGTTGAACCTCGGGTCAC--GCCGAGGTA--GTTTT
1 A--A--ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTCTTTT
* * *
1007224 CAATTGCTTTTTTTC-AA
62 AAATTTCTGTTTTTCAAA
* * * * * **
1007241 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTCGCAAGCTGAGGTA---TTTTACGT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTCTTTTAAAT
1007303 TTCTGTTTTTC-AA
66 TTCTGTTTTTCAAA
* * *
1007316 AAATCAACTCATATTGCTAGAGGTGAGCTGAGCCTCGGGTCACATGCCGAGGTA---TTTTCAAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTCTTTTAAAT
*
1007378 TTATGTTTTTC-AA
66 TTCTGTTTTTCAAA
* *
1007391 AAATCAACTCATATTGCGAGAGTTGAGTTGAGCCTCGGGTCAC--GCTGAGGTATT-TTTT-AAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTCTTTTAAAT
1007452 TTCTGTTTTTTC-AA
66 TTCTG-TTTTTCAAA
* * *
1007466 AAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCAC--GCTGAGGTA-T-TTTTAAAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTCTTTTAAAT
1007527 TTCTGTTTTTTGC-AA
66 TTCTG-TTTTT-CAAA
* * * * * *
1007542 AAATCAACTCATATTGCAAGAGGTGAGTTGAGCATTGAGTCA-A-GTCGAGGTA-T-TTTTCAAT
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTCTTTTAAAT
* **
1007603 TTTTACTTTTCAAAAAAAAAA
66 TTCTGTTTTTC-------AAA
*
1007624 TCAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAAGTATTTCTTTTA
1 --AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTA-TTCTTTTA
1007689 AATTTCTGTTTTTC-AA
63 AATTTCTGTTTTTCAAA
*
1007705 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCATGCCGAGGTATTTCTTTTAAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTA-TTCTTTTAAA
*
1007770 TTTATGTTTTTGC-AA
65 TTTCTGTTTTT-CAAA
*
1007785 AAATCAACTCATATTGCAAGAGGTGAGTTGAG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAG
1007817 TCTTGAGTCA
Statistics
Matches: 1422, Mismatches: 115, Indels: 137
0.85 0.07 0.08
Matches are distributed among these distances:
73 16 0.01
74 69 0.05
75 218 0.15
76 121 0.09
77 116 0.08
78 85 0.06
79 178 0.13
80 144 0.10
81 261 0.18
82 66 0.05
83 86 0.06
84 38 0.03
85 1 0.00
86 7 0.00
88 1 0.00
89 15 0.01
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (79 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTCTTTTAAAT
TTCTGTTTTTCAAA
Found at i:1006428 original size:162 final size:157
Alignment explanation
Indices: 1006133--1008148 Score: 1902
Period size: 162 Copynumber: 12.8 Consensus size: 157
1006123 TTTTTTTTTT
* * *
1006133 AAATCAACTCATAATGC-AGGAGGTGAGTTGAGCCTCGGGGCACATGCCGAGGTATTTC---TCA
1 AAATCAACTCATATTGCGA-GAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAA
** * *
1006194 ATTTCTGTTTTTTTAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCGGGTCACATACCG
65 ATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA-GCCG
1006259 AGGTATTTCTTTTAAATTTCTGTTTTTCAAAA
129 AGGTA--T-TTTTAAATTTCTGTTTTTCAAAA
* * **
1006291 AAATCAACTCATATTGCTATAGGTGAGTTGAGCCTCGGGTCACATAACGAGGTATTTCTTTTAAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
* * **
1006356 TTTCTGTTTTTCAAAAAAATCAACTCATATTGCTATAGGTGAGTTGAGCCTCGGGTCACATAACG
66 TTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA-GCCG
1006421 AGGTATTTCTTTTAAATTTCTGTTTTTCAAAA
129 AGGTA--T-TTTTAAATTTCTGTTTTTCAAAA
* * **
1006453 AAATCAACTCATATTGCTATAGGTGAGTTGAGCCTCGGGTCACATAACGAGGTATTTCTTTTAAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
* *
1006518 TTTCTGTTTTTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTC-GGAC-CATGCCGA
66 TTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA-GCCGA
1006581 GGTATTTCTTTTAAATTTCTGTTTTTCAAAAAAAA
130 GGTA--T-TTTTAAATTTCTGTTTTTC----AAAA
* * **
1006616 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTC-GGAC-CATGCCGAGGTATTTAGTTTAAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
* * *
1006679 TTTCCGTTTTTCAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCAC-GCTGA
66 TTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAGCCGA
*
1006743 GGTA-TTTTCAATTTCTGTTTTTCAAAAAAAA
130 GGTATTTTTAAATTTCTGTTTTTC----AAAA
* * *
1006774 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTTGGGCCACATGCCGAGGTA--TC-TTT-AA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
* * * *
1006835 TTTCTATTTTTTTAAAAAATGCAACTCATAATGCGAGAGGTGAGTTGAGCCTCGGGTCAC-GCTG
66 TTTCT-GTTTTTCAAAAAAT-CAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAGCCG
* * *
1006899 AGGTA-TTTTCAATTTATGTTTTTTTAAAAA
129 AGGTATTTTTAAATTTCTG--TTTTTCAAAA
*
1006929 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTTAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
* * *
1006994 TTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGAGTCACACGCTGA
66 TTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA-GCCGA
*
1007059 GGTATTTTTCAATTTCTGTTTTTC--AA
130 GGTATTTTTAAATTTCTGTTTTTCAAAA
* * * **
1007085 AAATCAACTCATAATGCGAAAAGTGAGTTGAGCCTCGGGTCAC--GTTGAGGTA--T-TTTT-AA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
* * *
1007144 TTTCTGTTTTTTAAAAAAAATCATCATCAACTCATAATGCGAGAGGTGAGTTGAACCTCGGGTCA
66 TTTCTG-TTTTT---CAAAA--A--ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
* * * *
1007209 C-GCCGAGGTAGTTTTCAATTGCTTTTTTTC--AA
123 CAGCCGAGGTATTTTTAAATTTCTGTTTTTCAAAA
* * * * * **
1007241 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTCAGGTCGCAAGCTGAGGTA----TTTTACG
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
* *
1007302 TTTCTGTTTTTC-AAAAATCAACTCATATTGCTAGAGGTGAGCTGAGCCTCGGGTCACATGCCGA
66 TTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA-GCCGA
* *
1007366 GGTA-TTTTCAATTTATGTTTTTC--AA
130 GGTATTTTTAAATTTCTGTTTTTCAAAA
* *
1007391 AAATCAACTCATATTGCGAGAGTTGAGTTGAGCCTCGGGTCAC--GCTGAGGTA-TT-TTTT-AA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
* * *
1007451 TTTCTGTTTTTTC-AAAAATCAACTCATAATACGAGAGGTGAGTTGAGCCTCGGGTCAC-GCTGA
66 TTTCTG-TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAGCCGA
***
1007514 GGTATTTTTAAATTTCTGTTTTTTGCAA
130 GGTATTTTTAAATTTCTGTTTTTCAAAA
* * * * * *
1007542 AAATCAACTCATATTGCAAGAGGTGAGTTGAGCATTGAGTCA-A-GTCGAGGTA--T-TTTTCAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
* **
1007602 TTTTTACTTTTCAAAAAAAAAATCAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
66 TTTCTGTTTTTC-------AAA--AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTC
*
1007667 ACATGCCGAAGTATTTCTTTTAAATTTCTGTTTTTC--AA
122 ACA-GCCGAGGTA--T-TTTTAAATTTCTGTTTTTCAAAA
*
1007705 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCATGCCGAGGTATTTCTTTTAAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
* * * * * *
1007770 TTTATGTTTTTGC-AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTTGAGTCA-AGTCGA
66 TTTCTGTTTTT-CAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAGCCGA
* * * *
1007833 GGTATTTTTCAATTTTTACTTTTCAAAAAAAAAAAACAAAAAA
130 GGTATTTTTAAATTTCT-GTTTT------------TC--AAAA
* *
1007876 TCAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATGTCGAGGTATTTCTTTTA
1 --AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTA
* * * * *
1007941 AATTTTTG-TTTTCGAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGTCTCGAGTCA-TGC
64 AATTTCTGTTTTTC--AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAGC
* * *
1008004 TGAGGTA-TTTTCAATTTCTGTTTGTC--AA
127 CGAGGTATTTTTAAATTTCTGTTTTTCAAAA
* * * * * ** *
1008032 AAATCAACTCATAATGCGAGAAGTGAGTTGAGCCTTGGATCGCACACCGAGGTA-TT-TTTCAAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
* * * *
1008095 TTT-TGTTTTTTC-AAAGATCAACTCATAATCCGAGAGGTGAGTTGAGCTTCGGGT
66 TTTCTG-TTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
1008149 TGCATTTCGA
Statistics
Matches: 1613, Mismatches: 154, Indels: 190
0.82 0.08 0.10
Matches are distributed among these distances:
148 17 0.01
149 59 0.04
150 162 0.10
151 73 0.05
152 10 0.01
153 10 0.01
154 68 0.04
155 60 0.04
156 124 0.08
157 123 0.08
158 188 0.12
159 96 0.06
160 69 0.04
161 82 0.05
162 211 0.13
163 79 0.05
164 3 0.00
165 26 0.02
167 2 0.00
168 14 0.01
169 1 0.00
171 3 0.00
172 7 0.00
173 78 0.05
174 48 0.03
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (157 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
TTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACAGCCGAG
GTATTTTTAAATTTCTGTTTTTCAAAA
Found at i:1007896 original size:173 final size:173
Alignment explanation
Indices: 1007705--1008020 Score: 510
Period size: 173 Copynumber: 1.8 Consensus size: 173
1007695 TGTTTTTCAA
*
1007705 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCGCATGCCGAGGTATTTCTTTTAAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
* * * *
1007770 TTTATGTTTTTG-CAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTTGAGTCAAG-TCGA
66 TTTATGTTTTCGAAAAAAATCAACTCATAATGCAAGAGGTGAGTTGAGTCTCGAGTCAAGCT-GA
1007833 GGTATTTTTCAATTTTTACTTTTCAAAAAAAAAAAACAAAAAATC
130 GGTA-TTTTCAATTTTTACTTTTCAAAAAAAAAAAACAAAAAATC
* *
1007878 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATGTCGAGGTATTTCTTTTAAA
1 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
* * *
1007943 TTTTTGTTTTCGAAAAAAATCAACTCATAATGCGAGAGGTGAGTTGAGTCTCGAGTCATGCTGAG
66 TTTATGTTTTCGAAAAAAATCAACTCATAATGCAAGAGGTGAGTTGAGTCTCGAGTCAAGCTGAG
1008008 GTATTTTCAATTT
131 GTATTTTCAATTT
1008021 CTGTTTGTCA
Statistics
Matches: 131, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
173 82 0.63
174 48 0.37
175 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.21, T:0.34
Consensus pattern (173 bp):
AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCCGAGGTATTTCTTTTAAA
TTTATGTTTTCGAAAAAAATCAACTCATAATGCAAGAGGTGAGTTGAGTCTCGAGTCAAGCTGAG
GTATTTTCAATTTTTACTTTTCAAAAAAAAAAAACAAAAAATC
Found at i:1007959 original size:93 final size:90
Alignment explanation
Indices: 1007785--1007961 Score: 221
Period size: 93 Copynumber: 1.9 Consensus size: 90
1007775 GTTTTTGCAA
* *
1007785 AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTTGAGTCAAGTCGAGGTATTTTTCAATTTTT
1 AAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGAGTCAAGTCGAGGTATTTTTAAATTTTT
1007850 ACTTTTCAAAAAAAAAAAACAAAAAATC
66 ACTTTTC---AAAAAAAAACAAAAAATC
* *
1007878 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATGTCGAGGTATTTCTTTTAAA
1 AAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGAGTCA-A-GTCGAGGTA--T-TTTTAAA
* *
1007943 TTTTT-GTTTTCGAAAAAAA
61 TTTTTACTTTTCAAAAAAAA
1007962 TCAACTCATA
Statistics
Matches: 73, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
93 39 0.53
94 8 0.11
95 9 0.12
97 6 0.08
98 11 0.15
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (90 bp):
AAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTTGAGTCAAGTCGAGGTATTTTTAAATTTTT
ACTTTTCAAAAAAAAACAAAAAATC
Found at i:1008165 original size:77 final size:77
Alignment explanation
Indices: 1007878--1008167 Score: 281
Period size: 77 Copynumber: 3.8 Consensus size: 77
1007868 ACAAAAAATC
* * * *
1007878 AAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGGTCACATGTCGAGGTATTTCTTTTAAA
1 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTTGGGTCGCATTTCGAGGTA-TT-TTTCAAA
*
1007943 TTTT-TGTTTTCGAAAA
64 TTTTGTTTTTTC---AA
* * * *
1007959 AAATCAACTCATAATGCGAGAGGTGAGTTGAGTCTCGAGT--CA-TGCTGAGGTA-TTTTC-AAT
1 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTTGGGTCGCATTTC-GAGGTATTTTTCAAAT
*
1008019 TTCTG-TTTGTCAA
65 TT-TGTTTTTTCAA
* * ***
1008032 AAATCAACTCATAATGCGAGAAGTGAGTTGAGCCTTGGATCGCACACCGAGGTATTTTTCAAATT
1 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTTGGGTCGCATTTCGAGGTATTTTTCAAATT
1008097 TTGTTTTTTCAA
66 TTGTTTTTTCAA
* * * *
1008109 AGATCAACTCATAATCCGAGAGGTGAGTTGAG-CTTCGGGTTGCATTTCGAGCTATTTTT
1 AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTT-GGGTCGCATTTCGAGGTATTTTT
1008168 GATTTCTGTT
Statistics
Matches: 173, Mismatches: 26, Indels: 24
0.78 0.12 0.11
Matches are distributed among these distances:
73 37 0.21
75 13 0.08
76 19 0.11
77 59 0.34
78 1 0.01
79 8 0.05
81 36 0.21
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (77 bp):
AAATCAACTCATAATGCGAGAGGTGAGTTGAGCCTTGGGTCGCATTTCGAGGTATTTTTCAAATT
TTGTTTTTTCAA
Found at i:1008422 original size:29 final size:29
Alignment explanation
Indices: 1008353--1008431 Score: 97
Period size: 29 Copynumber: 2.7 Consensus size: 29
1008343 AAAAATTCAA
1008353 AAAATTACATTTTAGCCCCTAAACTTTCTC
1 AAAATTACATTTTAGCCCC-AAACTTTCTC
* *
1008383 AAAATTACATTTTAGCCCCATATTTTC-C
1 AAAATTACATTTTAGCCCCAAACTTTCTC
* *
1008411 TAAAATTGCATTTTTGCCCCA
1 -AAAATTACATTTTAGCCCCA
1008432 GAAACTTTGC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 1 0.02
29 24 0.55
30 19 0.43
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.38
Consensus pattern (29 bp):
AAAATTACATTTTAGCCCCAAACTTTCTC
Found at i:1009008 original size:11 final size:11
Alignment explanation
Indices: 1008992--1009065 Score: 69
Period size: 11 Copynumber: 6.4 Consensus size: 11
1008982 AGAGGAAAGT
1008992 AAAAAGAAGAA
1 AAAAAGAAGAA
1009003 AAAAAGAAAGAA
1 AAAAAG-AAGAA
1009015 CAAAAATTGAAAGAA
1 -AAAAA--G-AAGAA
*
1009030 AAATAGAAGAA
1 AAAAAGAAGAA
*
1009041 AAAAAAAAGAA
1 AAAAAGAAGAA
*
1009052 AGAAAGAA-AA
1 AAAAAGAAGAA
1009062 AAAA
1 AAAA
1009066 GGAAAAAATA
Statistics
Matches: 53, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
10 5 0.09
11 26 0.49
12 6 0.11
13 5 0.09
14 4 0.08
15 7 0.13
ACGTcount: A:0.80, C:0.01, G:0.15, T:0.04
Consensus pattern (11 bp):
AAAAAGAAGAA
Found at i:1009014 original size:15 final size:14
Alignment explanation
Indices: 1008994--1009080 Score: 77
Period size: 15 Copynumber: 5.9 Consensus size: 14
1008984 AGGAAAGTAA
1008994 AAAGAAGAAAAAAAG
1 AAAGAA-AAAAAAAG
**
1009009 AAAGAACAAAAATTG
1 AAAGAA-AAAAAAAG
*
1009024 AAAGAAAAATAGAAG
1 AAAGAAAAA-AAAAG
*
1009039 AAAAAAAAAAGAAAG
1 AAAGAAAAAA-AAAG
*
1009054 AAAGAAAAAAAAGG
1 AAAGAAAAAAAAAG
1009068 AAA-AAATAAAAAA
1 AAAGAAA-AAAAAA
1009081 TAAAATAAAA
Statistics
Matches: 58, Mismatches: 11, Indels: 7
0.76 0.14 0.09
Matches are distributed among these distances:
13 3 0.05
14 15 0.26
15 40 0.69
ACGTcount: A:0.79, C:0.01, G:0.15, T:0.05
Consensus pattern (14 bp):
AAAGAAAAAAAAAG
Found at i:1009039 original size:26 final size:27
Alignment explanation
Indices: 1008992--1009078 Score: 88
Period size: 26 Copynumber: 3.2 Consensus size: 27
1008982 AGAGGAAAGT
*
1008992 AAAAAG-AAGAAAAAAAGAAAGAACAA
1 AAAAAGAAAGAAAAAAAGAAAGAAAAA
** *
1009018 AAATTGAAAGAAAAATAG-AAGAAAAA
1 AAAAAGAAAGAAAAAAAGAAAGAAAAA
*
1009044 AAAAAGAAAGAAAGAAAAAAAAGGAAAAA
1 AAAAAGAAAGAAA-AAAAGAAA-GAAAAA
1009073 ATAAAA
1 A-AAAA
1009079 AATAAAATAA
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
26 22 0.46
27 13 0.27
28 2 0.04
29 7 0.15
30 4 0.08
ACGTcount: A:0.79, C:0.01, G:0.15, T:0.05
Consensus pattern (27 bp):
AAAAAGAAAGAAAAAAAGAAAGAAAAA
Found at i:1009075 original size:41 final size:40
Alignment explanation
Indices: 1008995--1009072 Score: 97
Period size: 41 Copynumber: 1.9 Consensus size: 40
1008985 GGAAAGTAAA
* *
1008995 AAGAAGAAAAAAAGAAAGAACAAAAATTGAAAGAAAAATAG
1 AAGAAAAAAAAAAGAAAGAACAAAAA-TAAAAGAAAAATAG
1009036 AAGAAAAAAAAAAGAAAGAA-AGAAAA-AAAAGGAAAAA
1 AAGAAAAAAAAAAGAAAGAACA-AAAATAAAA-GAAAAA
1009073 ATAAAAAATA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
39 3 0.09
40 7 0.21
41 23 0.70
ACGTcount: A:0.78, C:0.01, G:0.17, T:0.04
Consensus pattern (40 bp):
AAGAAAAAAAAAAGAAAGAACAAAAATAAAAGAAAAATAG
Found at i:1009253 original size:24 final size:23
Alignment explanation
Indices: 1009208--1009253 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
1009198 AAAAAAAAAA
* *
1009208 CAAAAAACAGCAGGCCTACAGCC
1 CAAAAAAAAGCAGGCCCACAGCC
1009231 CAAAAAAAAGCAGGCCCAGCAGC
1 CAAAAAAAAGCAGGCCCA-CAGC
1009254 AGGCCACAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 16 0.80
24 4 0.20
ACGTcount: A:0.46, C:0.33, G:0.20, T:0.02
Consensus pattern (23 bp):
CAAAAAAAAGCAGGCCCACAGCC
Found at i:1009949 original size:36 final size:35
Alignment explanation
Indices: 1009874--1010079 Score: 134
Period size: 36 Copynumber: 5.6 Consensus size: 35
1009864 ACCTCTTTTC
* *
1009874 AAAATTTTCGTGTTTTCAAAAAATTTATTG-TGTTT-A
1 AAAATTTTCGTG-TTTC-AAAAATTT-TCGTTTTTTAA
*
1009910 AAAATTTTCGTGTTTCAAGAATTTTCGTATTTTTAA
1 AAAATTTTCGTGTTTCAAAAATTTTCGT-TTTTTAA
* ***
1009946 AAAATTATCGTGTTT-AAAAATTTTTGCGTTATCAAAA
1 AAAATTTTCGTGTTTCAAAAA-TTTT-CGTT-TTTTAA
**
1009983 AAAATTTTCGTGTTTCAAAAATTTTCGGGTTTTCAAAAAA
1 AAAATTTTCGTGTTTCAAAAATTTTC--GTTTT---TTAA
* *
1010023 AAAAATTTCGTGTTTCAAAAAATTTT-GTGTTTTCAA
1 AAAATTTTCGTGTTTC-AAAAATTTTCGT-TTTTTAA
*
1010059 ACAAA-TTTCGTGTTTAAAAAA
1 A-AAATTTTCGTGTTTCAAAAA
1010080 GAAATTCTCG
Statistics
Matches: 141, Mismatches: 14, Indels: 31
0.76 0.08 0.17
Matches are distributed among these distances:
33 2 0.01
34 7 0.05
35 17 0.12
36 46 0.33
37 28 0.20
38 10 0.07
39 3 0.02
40 19 0.13
41 9 0.06
ACGTcount: A:0.37, C:0.08, G:0.11, T:0.44
Consensus pattern (35 bp):
AAAATTTTCGTGTTTCAAAAATTTTCGTTTTTTAA
Found at i:1009959 original size:52 final size:52
Alignment explanation
Indices: 1009870--1009969 Score: 157
Period size: 52 Copynumber: 1.9 Consensus size: 52
1009860 CGATACCTCT
* *
1009870 TTTCAAAATTTTCGTGTTTTCAAAAAATTTATTGTGTTTAAAAATTTTCGTG
1 TTTCAAAATTTTCGTATTTTCAAAAAATTTATCGTGTTTAAAAATTTTCGTG
*
1009922 TTTCAAGAATTTTCGTATTTTTAAAAAA-TTATCGTGTTTAAAAATTTT
1 TTTCAA-AATTTTCGTATTTTCAAAAAATTTATCGTGTTTAAAAATTTT
1009970 TGCGTTATCA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
52 25 0.57
53 19 0.43
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (52 bp):
TTTCAAAATTTTCGTATTTTCAAAAAATTTATCGTGTTTAAAAATTTTCGTG
Found at i:1009986 original size:21 final size:20
Alignment explanation
Indices: 1009961--1010044 Score: 66
Period size: 21 Copynumber: 4.2 Consensus size: 20
1009951 TATCGTGTTT
*
1009961 AAAAATTTTTGCGTTATCAAA
1 AAAAATTTTCGCGTT-TCAAA
*
1009982 AAAAATTTTCGTGTTTC---
1 AAAAATTTTCGCGTTTCAAA
*
1009999 AAAAATTTTCGGGTTTTCAAAAA
1 AAAAATTTTCGCG-TTTC--AAA
* *
1010022 AAAAAATTTCGTGTTTCAAA
1 AAAAATTTTCGCGTTTCAAA
1010042 AAA
1 AAA
1010045 TTTTGTGTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
17 12 0.23
18 4 0.08
20 8 0.15
21 13 0.25
22 4 0.08
23 11 0.21
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.37
Consensus pattern (20 bp):
AAAAATTTTCGCGTTTCAAA
Found at i:1010026 original size:23 final size:22
Alignment explanation
Indices: 1009999--1010044 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
1009989 TTCGTGTTTC
*
1009999 AAAAATTTTCGGGTTTTCAAAAA
1 AAAAAATTTCGGG-TTTCAAAAA
*
1010022 AAAAAATTTCGTGTTTCAAAAA
1 AAAAAATTTCGGGTTTCAAAAA
1010044 A
1 A
1010045 TTTTGTGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.48, C:0.09, G:0.11, T:0.33
Consensus pattern (22 bp):
AAAAAATTTCGGGTTTCAAAAA
Found at i:1010034 original size:40 final size:39
Alignment explanation
Indices: 1009944--1010059 Score: 139
Period size: 40 Copynumber: 2.9 Consensus size: 39
1009934 TCGTATTTTT
*
1009944 AAAAAATTATCGTGTTT-AAAAATTTTTGCGTTATC--AAA
1 AAAAAATT-TCGTGTTTCAAAAA-TTTTGCGTTTTCAAAAA
* *
1009982 AAAAATTTTCGTGTTTCAAAAATTTTCGGGTTTTCAAAAA
1 AAAAAATTTCGTGTTTCAAAAATTTT-GCGTTTTCAAAAA
*
1010022 AAAAAATTTCGTGTTTCAAAAAATTTTGTGTTTTCAAA
1 AAAAAATTTCGTGTTTC-AAAAATTTTGCGTTTTCAAA
1010060 CAAATTTCGT
Statistics
Matches: 68, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
37 12 0.18
38 18 0.26
40 29 0.43
41 9 0.13
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.41
Consensus pattern (39 bp):
AAAAAATTTCGTGTTTCAAAAATTTTGCGTTTTCAAAAA
Found at i:1010044 original size:17 final size:17
Alignment explanation
Indices: 1009870--1010079 Score: 122
Period size: 17 Copynumber: 11.6 Consensus size: 17
1009860 CGATACCTCT
*
1009870 TTTC-AAAATTTTCGTG
1 TTTCAAAAAATTTCGTG
*
1009886 TTTTCAAAAAATTTATTGTG
1 -TTTCAAAAAA-TT-TCGTG
*
1009906 TTT-AAAAATTTTCGTG
1 TTTCAAAAAATTTCGTG
* * *
1009922 TTTCAAGAATTTTCGTAT
1 TTTCAAAAAATTTCGT-G
*
1009940 TTTTAAAAAATTATCGTG
1 TTTCAAAAAATT-TCGTG
* * *
1009958 TTT-AAAAATTTTTGCG
1 TTTCAAAAAATTTCGTG
1009974 TTATCAAAAAAAATTTTCGTG
1 TT-TC--AAAAAA-TTTCGTG
* *
1009995 TTTCAAAAATTTTCGGG
1 TTTCAAAAAATTTCGTG
1010012 TTTTCAAAAAAAAAAATTTCGTG
1 -TTTC-----AAAAAATTTCGTG
*
1010035 TTTCAAAAAATTTTGTG
1 TTTCAAAAAATTTCGTG
1010052 TTTTCAAACAAATTTCGTG
1 -TTTCAAA-AAATTTCGTG
1010071 TTT-AAAAAA
1 TTTCAAAAAA
1010080 GAAATTCTCG
Statistics
Matches: 152, Mismatches: 22, Indels: 39
0.71 0.10 0.18
Matches are distributed among these distances:
16 15 0.10
17 46 0.30
18 40 0.26
19 18 0.12
20 11 0.07
21 7 0.05
22 4 0.03
23 11 0.07
ACGTcount: A:0.36, C:0.09, G:0.11, T:0.44
Consensus pattern (17 bp):
TTTCAAAAAATTTCGTG
Found at i:1010099 original size:21 final size:20
Alignment explanation
Indices: 1010061--1010100 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
1010051 GTTTTCAAAC
*
1010061 AAATTTCGTGTTTAAAAAAG
1 AAATTTCGTGGTTAAAAAAG
*
1010081 AAATTCTCGTGGTTCAAAAA
1 AAATT-TCGTGGTTAAAAAA
1010101 TTTCCGTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.42, C:0.10, G:0.15, T:0.33
Consensus pattern (20 bp):
AAATTTCGTGGTTAAAAAAG
Found at i:1018228 original size:18 final size:18
Alignment explanation
Indices: 1018193--1018237 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
1018183 GCAATAACTG
*
1018193 ACGTTTTGAAAATTAATA
1 ACGTTTTGAAAATGAATA
1018211 ACGTTTTGAAAGA-GAATA
1 ACGTTTTGAAA-ATGAATA
1018229 AC-TTTTGAA
1 ACGTTTTGAA
1018238 TACGAATCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 7 0.28
18 17 0.68
19 1 0.04
ACGTcount: A:0.42, C:0.07, G:0.16, T:0.36
Consensus pattern (18 bp):
ACGTTTTGAAAATGAATA
Found at i:1019294 original size:67 final size:66
Alignment explanation
Indices: 1019066--1019284 Score: 264
Period size: 67 Copynumber: 3.3 Consensus size: 66
1019056 ACCATAGCCT
* * * * * * *
1019066 AGCTATGATCTTACGCATCTT-ACTCTATGTTTAATGTCCTAGCAGACTCTTTATGTTGCCTTAG
1 AGCTATGGTCTTACACATCTTGTC-CCATGTTTAATGTCCTAG-AGACTCTCTATGTTGTCATAG
*
1019130 TCGA
64 T-AA
1019134 A-CTATGGTCTTACACATCTTGTCCCATGTTTAATGTCCTAGCAGACTCTCTATGTTGTCATAGT
1 AGCTATGGTCTTACACATCTTGTCCCATGTTTAATGTCCTAG-AGACTCTCTATGTTGTCATAGT
*
1019198 AG
65 AA
* *
1019200 AGCTATGGTTTTACACATCTTGTCCCATGTTTAATGT-CTTGATGGACTCTCTATGTTGTCATAG
1 AGCTATGGTCTTACACATCTTGTCCCATGTTTAATGTCCTAGA--GACTCTCTATGTTGTCATAG
1019264 TAA
64 TAA
1019267 AGCTATGGTCTTACACAT
1 AGCTATGGTCTTACACAT
1019285 TATACCCCAT
Statistics
Matches: 134, Mismatches: 13, Indels: 9
0.86 0.08 0.06
Matches are distributed among these distances:
65 1 0.01
66 4 0.03
67 127 0.95
68 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (66 bp):
AGCTATGGTCTTACACATCTTGTCCCATGTTTAATGTCCTAGAGACTCTCTATGTTGTCATAGTA
A
Found at i:1019936 original size:22 final size:23
Alignment explanation
Indices: 1019898--1019942 Score: 83
Period size: 22 Copynumber: 2.0 Consensus size: 23
1019888 AAATAATAAC
1019898 AAAATTAACAATAAAACAAGTGT
1 AAAATTAACAATAAAACAAGTGT
1019921 AAAATTAAC-ATAAAACAAGTGT
1 AAAATTAACAATAAAACAAGTGT
1019943 TATACAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 13 0.59
23 9 0.41
ACGTcount: A:0.60, C:0.09, G:0.09, T:0.22
Consensus pattern (23 bp):
AAAATTAACAATAAAACAAGTGT
Found at i:1022838 original size:29 final size:28
Alignment explanation
Indices: 1022801--1022856 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
1022791 TTTATTACAC
1022801 ATATATAATT-ATAGTATTAAAAATATTTT
1 ATATATAATTAATA-TATTAAAAA-ATTTT
* *
1022830 ATATTTAATTAATATTTTAAAAAATTT
1 ATATATAATTAATATATTAAAAAATTT
1022857 ATTTCACTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 4 0.17
29 17 0.71
30 3 0.12
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (28 bp):
ATATATAATTAATATATTAAAAAATTTT
Found at i:1026033 original size:82 final size:82
Alignment explanation
Indices: 1025837--1026133 Score: 274
Period size: 82 Copynumber: 3.6 Consensus size: 82
1025827 ACACCAGCAT
* * * * * ** * *
1025837 AAAGCCTACTAGGCTC-AAGGCTAGATACAACACATCGGCACAAAGCCAGCTAGGTACAAAGCCT
1 AAAGCCTGCTAGGCTCAAAGCCT-GATATAACACACCGGTATGAAGCCTGCTAGGCACAAAGCCT
* *
1025901 GATATAATACACCGATAC
65 GATATAATACAACGGTAC
* * * * * *
1025919 GAAGCCTGCAAAGCTTAAAGCCTAATATAACACACTGGTATGAAGCCTGCTAGGCACAAAGCCTG
1 AAAGCCTGCTAGGCTCAAAGCCTGATATAACACACCGGTATGAAGCCTGCTAGGCACAAAGCCTG
1025984 ATATAATACAACGGTAC
66 ATATAATACAACGGTAC
* * * ** * * * * *
1026001 AAAGCTTGCTAGGCTCAAAACCTGATAAAACACACCGACACGAAGCTTGATAAGCACAAAGCCTA
1 AAAGCCTGCTAGGCTCAAAGCCTGATATAACACACCGGTATGAAGCCTGCTAGGCACAAAGCCTG
* *
1026066 ATGTAATAC-ACTGGCAC
66 ATATAATACAAC-GGTAC
* * *
1026083 AAAACCTGCTAGGCTCAAAGCCTGATATAATACACCGGTATGAAGCTTGCT
1 AAAGCCTGCTAGGCTCAAAGCCTGATATAACACACCGGTATGAAGCCTGCT
1026134 GGACTCAAGG
Statistics
Matches: 169, Mismatches: 44, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
81 2 0.01
82 162 0.96
83 5 0.03
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (82 bp):
AAAGCCTGCTAGGCTCAAAGCCTGATATAACACACCGGTATGAAGCCTGCTAGGCACAAAGCCTG
ATATAATACAACGGTAC
Found at i:1026062 original size:123 final size:123
Alignment explanation
Indices: 1025876--1026141 Score: 313
Period size: 123 Copynumber: 2.2 Consensus size: 123
1025866 ACACATCGGC
** * * * * **
1025876 ACAAAGCCAGCTAGG-TACAAAGCCTGATATAATACACCGATACGAAGCCTGCAAAGCTTAAAGC
1 ACAAAGCTTGCTAGGCT-CAAAACCTGATAAAACACACCGACACGAAGCCTGCAAAGCACAAAGC
* ** *
1025940 CTAATATAACACACTGGTATGAAGCCTGCTAGGCACAAAGCCTGATATAATACAACGGT
65 CTAATATAACACACTGGCACAAAACCTGCTAGGCACAAAGCCTGATATAATACAACGGT
*
1025999 ACAAAGCTTGCTAGGCTCAAAACCTGATAAAACACACCGACACGAAGCTTG-ATAAGCACAAAGC
1 ACAAAGCTTGCTAGGCTCAAAACCTGATAAAACACACCGACACGAAGCCTGCA-AAGCACAAAGC
* * * *
1026063 CTAATGTAATACACTGGCACAAAACCTGCTAGGCTCAAAGCCTGATATAATACACCGGT
65 CTAATATAACACACTGGCACAAAACCTGCTAGGCACAAAGCCTGATATAATACAACGGT
**
1026122 ATGAAGCTTGCT-GGACTCAA
1 ACAAAGCTTGCTAGG-CTCAA
1026142 GGCCCGATAC
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
122 3 0.02
123 117 0.97
124 1 0.01
ACGTcount: A:0.38, C:0.24, G:0.18, T:0.19
Consensus pattern (123 bp):
ACAAAGCTTGCTAGGCTCAAAACCTGATAAAACACACCGACACGAAGCCTGCAAAGCACAAAGCC
TAATATAACACACTGGCACAAAACCTGCTAGGCACAAAGCCTGATATAATACAACGGT
Found at i:1026141 original size:41 final size:41
Alignment explanation
Indices: 1025838--1026150 Score: 227
Period size: 41 Copynumber: 7.6 Consensus size: 41
1025828 CACCAGCATA
* * * * * * *
1025838 AAGCCTACTAGGCTC-AAGGCTAGATACAACACATCGGCACA
1 AAGCCTGCTAGGCTCAAAGCCT-GATATAATACACCGGTACG
* *
1025879 AAGCCAGCTAGG-TACAAAGCCTGATATAATACACCGATACG
1 AAGCCTGCTAGGCT-CAAAGCCTGATATAATACACCGGTACG
* * * * * * *
1025920 AAGCCTGCAAAGCTTAAAGCCTAATATAACACACTGGTATG
1 AAGCCTGCTAGGCTCAAAGCCTGATATAATACACCGGTACG
* * *
1025961 AAGCCTGCTAGGCACAAAGCCTGATATAATACAACGGTACA
1 AAGCCTGCTAGGCTCAAAGCCTGATATAATACACCGGTACG
* * * * **
1026002 AAGCTTGCTAGGCTCAAAACCTGATAAAACACACCGACACG
1 AAGCCTGCTAGGCTCAAAGCCTGATATAATACACCGGTACG
* * * * * * * * *
1026043 AAGCTTGATAAGCACAAAGCCTAATGTAATACACTGGCACA
1 AAGCCTGCTAGGCTCAAAGCCTGATATAATACACCGGTACG
* *
1026084 AAACCTGCTAGGCTCAAAGCCTGATATAATACACCGGTATG
1 AAGCCTGCTAGGCTCAAAGCCTGATATAATACACCGGTACG
* * *
1026125 AAGCTTGCT-GGACTCAAGGCCCGATA
1 AAGCCTGCTAGG-CTCAAAGCCTGATA
1026151 CACTATCTCC
Statistics
Matches: 205, Mismatches: 63, Indels: 8
0.74 0.23 0.03
Matches are distributed among these distances:
40 3 0.01
41 196 0.96
42 6 0.03
ACGTcount: A:0.37, C:0.25, G:0.19, T:0.18
Consensus pattern (41 bp):
AAGCCTGCTAGGCTCAAAGCCTGATATAATACACCGGTACG
Found at i:1034794 original size:21 final size:21
Alignment explanation
Indices: 1034755--1034794 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
1034745 AATTAAGGAC
* **
1034755 AAATTGAGATTGTGCAAATTG
1 AAATTGAAATTGTAAAAATTG
1034776 AAATTGAAATTGTAAAAAT
1 AAATTGAAATTGTAAAAAT
1034795 AAACAGAGTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.17, T:0.33
Consensus pattern (21 bp):
AAATTGAAATTGTAAAAATTG
Found at i:1037110 original size:5 final size:5
Alignment explanation
Indices: 1037093--1037123 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
1037083 AAGAAAATAG
1037093 AAAAT ATAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT A-AAAT AAAAT AAAAT AAAAT AAAAT
1037124 TGGGTTGCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
AAAAT
Found at i:1037801 original size:38 final size:38
Alignment explanation
Indices: 1037759--1037834 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
1037749 CATTTTTATC
*
1037759 ACATAAAAGCCCGCAGGAAAGATAAGTCCGTTGGCTTT
1 ACATAAAAGCCCACAGGAAAGATAAGTCCGTTGGCTTT
*
1037797 ACATAAAAGTCCACAGGAAAGATAAGTCCGTTGGCTTT
1 ACATAAAAGCCCACAGGAAAGATAAGTCCGTTGGCTTT
1037835 CACTAATACG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.36, C:0.20, G:0.22, T:0.22
Consensus pattern (38 bp):
ACATAAAAGCCCACAGGAAAGATAAGTCCGTTGGCTTT
Found at i:1038881 original size:409 final size:410
Alignment explanation
Indices: 1038121--1038950 Score: 1518
Period size: 409 Copynumber: 2.0 Consensus size: 410
1038111 TCCAGTCAAT
1038121 TTTTGCTTGTTGATGCAAAGCTCCTTAAGGAACTTGGCATATCATGAAATTTGTTTGATGGCATC
1 TTTTGCTTGTTGATGCAAAGCTCCTTAAGGAACTTGGCATATCATGAAATTTGTTTGATGGCATC
*
1038186 TAACAATGGTATGTTGATCTCGACATTTATAAATTTTTCGAGGATCTCTTTTTCCCCCTTACCTC
66 CAACAATGGTATGTTGATCTCGACATTTATAAATTTTTCGAGGATCTCTTTTTCCCCCTTACCTC
* *
1038251 TCCGATATTGGCTCAATCGTCCTATAAACGGTGGTTGAATTATGGGCAATGGAGGTTTCGTTCAG
131 ACCGATATTGGCTCAATCGTCCTAGAAACGGTGGTTGAATTATGGGCAATGGAGGTTTCGTTCAG
*
1038316 ACCTGTTCATCGTTCTCTTTCTTTTTCTAGGCAAAATCTTGATCAAGGTTCCTGCCAGGATTCGG
196 ACCTGTTCATCGTTCTCTTTCTTTTTCTAGGCAAAATCTTGATCAAGATTCCTGCCAGGATTCGG
1038381 TTCCAGTACTTTTCCACTTCGTAACGTCACTGCATTTGCGTATTGTCTTGGGTTAGATTCCGTTT
261 TTCCAGTACTTTTCCACTTCGTAACGTCACTGCATTTGCGTATTGTCTTGGGTTAGATTCCGTTT
*
1038446 GTGATGGCAGCTTTCCTTATGAGTTCATTTTCTCAATTGATGTAGTCAACTCTCTTATGGATGCC
326 GTGATGGCAGCTTTCCTTATGAGTTCATTTTCTCAATTGATGTAGTCAACTCTCTTATAGATGCC
1038511 TCAATTTTCTGTTGAAAATC
391 TCAATTTTCTGTTGAAAATC
1038531 TTTTGCTTGTTGATGCAAAGCTCCTTAAGGAACTTGGCATATCATGAAATTTGTTTGATGGCATC
1 TTTTGCTTGTTGATGCAAAGCTCCTTAAGGAACTTGGCATATCATGAAATTTGTTTGATGGCATC
*
1038596 CAACAATGGTATGTTGATCTCGACATTTCTAAATTTTTCGAGGATCTCTTTTT-CCCCTTACCTC
66 CAACAATGGTATGTTGATCTCGACATTTATAAATTTTTCGAGGATCTCTTTTTCCCCCTTACCTC
* * * *
1038660 ACCGATGTTGGCTCAATCGTCCTAGAAACGGTGGTTGAATTATGGGTAATGGATGTTTTGTTCAG
131 ACCGATATTGGCTCAATCGTCCTAGAAACGGTGGTTGAATTATGGGCAATGGAGGTTTCGTTCAG
**
1038725 ACCTGTTCATCGTTCTCTTTCTTTTTCTAGGTGAAATCTTGATCAAGATTCCTGCCAGGATTCGG
196 ACCTGTTCATCGTTCTCTTTCTTTTTCTAGGCAAAATCTTGATCAAGATTCCTGCCAGGATTCGG
1038790 TTCCAGTACTTTTCCACTTCGTAACGTCACTGCATTTGCGTATTGTCTTGGGTTAGATTCCGTTT
261 TTCCAGTACTTTTCCACTTCGTAACGTCACTGCATTTGCGTATTGTCTTGGGTTAGATTCCGTTT
* *
1038855 GTGATGGCAGCTTTCCTTGTGAGTTCATTTTCTCAATTGATGTAGTTAACTCTCTTATAGATGCC
326 GTGATGGCAGCTTTCCTTATGAGTTCATTTTCTCAATTGATGTAGTCAACTCTCTTATAGATGCC
1038920 TCAATTTTCTGTTGAAAATC
391 TCAATTTTCTGTTGAAAATC
*
1038940 TTTTGTTTGTT
1 TTTTGCTTGTT
1038951 TTTGGAGATA
Statistics
Matches: 405, Mismatches: 15, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
409 289 0.71
410 116 0.29
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.40
Consensus pattern (410 bp):
TTTTGCTTGTTGATGCAAAGCTCCTTAAGGAACTTGGCATATCATGAAATTTGTTTGATGGCATC
CAACAATGGTATGTTGATCTCGACATTTATAAATTTTTCGAGGATCTCTTTTTCCCCCTTACCTC
ACCGATATTGGCTCAATCGTCCTAGAAACGGTGGTTGAATTATGGGCAATGGAGGTTTCGTTCAG
ACCTGTTCATCGTTCTCTTTCTTTTTCTAGGCAAAATCTTGATCAAGATTCCTGCCAGGATTCGG
TTCCAGTACTTTTCCACTTCGTAACGTCACTGCATTTGCGTATTGTCTTGGGTTAGATTCCGTTT
GTGATGGCAGCTTTCCTTATGAGTTCATTTTCTCAATTGATGTAGTCAACTCTCTTATAGATGCC
TCAATTTTCTGTTGAAAATC
Found at i:1049073 original size:5 final size:5
Alignment explanation
Indices: 1049063--1049104 Score: 75
Period size: 5 Copynumber: 8.2 Consensus size: 5
1049053 TTGCAAGCTA
1049063 GGTTT GGTTT GGTTT GGTTT GGTTT GGTTT GGTTTT GGTTT G
1 GGTTT GGTTT GGTTT GGTTT GGTTT GGTTT GG-TTT GGTTT G
1049105 TTGGGTTTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 31 0.86
6 5 0.14
ACGTcount: A:0.00, C:0.00, G:0.40, T:0.60
Consensus pattern (5 bp):
GGTTT
Found at i:1049111 original size:15 final size:16
Alignment explanation
Indices: 1049065--1049113 Score: 75
Period size: 15 Copynumber: 3.2 Consensus size: 16
1049055 GCAAGCTAGG
1049065 TTTGGTTTGGTTTGG-
1 TTTGGTTTGGTTTGGT
1049080 TTTGGTTTGGTTTGGT
1 TTTGGTTTGGTTTGGT
*
1049096 TTTGGTTT-GTTGGGT
1 TTTGGTTTGGTTTGGT
1049111 TTT
1 TTT
1049114 TCCATTCACA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 24 0.75
16 8 0.25
ACGTcount: A:0.00, C:0.00, G:0.37, T:0.63
Consensus pattern (16 bp):
TTTGGTTTGGTTTGGT
Found at i:1049731 original size:3 final size:3
Alignment explanation
Indices: 1049723--1049750 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
1049713 GTAGGGAAGC
1049723 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1049751 TAATTAATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:1054786 original size:15 final size:15
Alignment explanation
Indices: 1054766--1054796 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
1054756 GATTTGCTAT
1054766 TACACCTCTATTCCA
1 TACACCTCTATTCCA
1054781 TACACCTCTATTCCA
1 TACACCTCTATTCCA
1054796 T
1 T
1054797 TACGCCTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.39, G:0.00, T:0.35
Consensus pattern (15 bp):
TACACCTCTATTCCA
Found at i:1055504 original size:31 final size:29
Alignment explanation
Indices: 1055445--1055506 Score: 79
Period size: 31 Copynumber: 2.1 Consensus size: 29
1055435 TTAACAACCT
*
1055445 AATAACTTAAATAAAAATTTGAATAGTTC
1 AATAACTTAAATAAAAATTTAAATAGTTC
**
1055474 AATAACTTAAATGAATACGTTTAAATAGTTC
1 AATAACTTAAAT-AA-AAATTTAAATAGTTC
1055505 AA
1 AA
1055507 AATCAATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 12 0.43
30 2 0.07
31 14 0.50
ACGTcount: A:0.50, C:0.08, G:0.08, T:0.34
Consensus pattern (29 bp):
AATAACTTAAATAAAAATTTAAATAGTTC
Found at i:1058735 original size:15 final size:15
Alignment explanation
Indices: 1058695--1058785 Score: 78
Period size: 15 Copynumber: 5.9 Consensus size: 15
1058685 NNNNNNNNNN
1058695 TTAATAATATTTT-TA
1 TTAA-AATATTTTATA
* *
1058710 ATATAATTATTTTATA
1 TTA-AAATATTTTATA
*
1058726 TTAAAATATTTTATT
1 TTAAAATATTTTATA
*
1058741 TTAAATTATATTTTGAAA
1 TTAAA--ATATTTT-ATA
1058759 TT-AAATATTTTATA
1 TTAAAATATTTTATA
*
1058773 TTAAATTATTTTA
1 TTAAAATATTTTA
1058786 ATTTTTTTTT
Statistics
Matches: 61, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
14 4 0.07
15 40 0.66
16 5 0.08
17 9 0.15
18 3 0.05
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (15 bp):
TTAAAATATTTTATA
Found at i:1061112 original size:309 final size:310
Alignment explanation
Indices: 1060542--1061160 Score: 1231
Period size: 309 Copynumber: 2.0 Consensus size: 310
1060532 AAAATATTAC
1060542 TTATATTTTATTACATGAAAATGATCTTTAATAAATAAAACTACACTTGTAAATTTTATTAATGA
1 TTATATTTTATTACATGAAAATGATCTTTAATAAATAAAACTACACTTGTAAATTTTATTAATGA
1060607 TACAATCTAAATTTCTTTGTTTAATAACATTATTAATATATTATAGTTACAAAATTACAAAATTT
66 TACAATCTAAATTTCTTTGTTTAATAACATTATTAATATATTATAGTTACAAAATTACAAAATTT
1060672 TTATTTAATTCACTAGGCTTTTAAAATCTCTGCTACATAGCATTCTCTGTTCGCACCGCCGGCAC
131 TTATTTAATTCACTAGGCTTTTAAAATCTCTGCTACATAGCATTCTCTGTTCGCACCGCCGGCAC
1060737 TAATCGTATGCTCTCATTCCCCTTCTCTTTTACAATTTAGTTTTTTCATTAAACAACTTTGAATG
196 TAATCGTATGCTCTCATTCCCCTTCTCTTTTACAATTTAGTTTTTTCATTAAACAACTTTGAATG
1060802 TCAAGAATCTGTGAATCAAAATCCAAACAATTTTCTTCTCAAATCTTCGA
261 TCAAGAATCTGTGAATCAAAATCCAAACAATTTTCTTCTCAAATCTTCGA
1060852 TTATATTTTA-TACATGAAAATGATCTTTAATAAATAAAACTACACTTGTAAATTTTATTAATGA
1 TTATATTTTATTACATGAAAATGATCTTTAATAAATAAAACTACACTTGTAAATTTTATTAATGA
1060916 TACAATCTAAATTTCTTTGTTTAATAACATTATTAATATATTATAGTTACAAAATTACAAAATTT
66 TACAATCTAAATTTCTTTGTTTAATAACATTATTAATATATTATAGTTACAAAATTACAAAATTT
1060981 TTATTTAATTCACTAGGCTTTTAAAATCTCTGCTACATAGCATTCTCTGTTCGCACCGCCGGCAC
131 TTATTTAATTCACTAGGCTTTTAAAATCTCTGCTACATAGCATTCTCTGTTCGCACCGCCGGCAC
1061046 TAATCGTATGCTCTCATTCCCCTTCTCTTTTACAATTTAGTTTTTTCATTAAACAACTTTGAATG
196 TAATCGTATGCTCTCATTCCCCTTCTCTTTTACAATTTAGTTTTTTCATTAAACAACTTTGAATG
1061111 TCAAGAATCTGTGAATCAAAATCCAAACAATTTTCTTCTCAAATCTTCGA
261 TCAAGAATCTGTGAATCAAAATCCAAACAATTTTCTTCTCAAATCTTCGA
1061161 CATTAATCAT
Statistics
Matches: 309, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
309 299 0.97
310 10 0.03
ACGTcount: A:0.34, C:0.17, G:0.08, T:0.41
Consensus pattern (310 bp):
TTATATTTTATTACATGAAAATGATCTTTAATAAATAAAACTACACTTGTAAATTTTATTAATGA
TACAATCTAAATTTCTTTGTTTAATAACATTATTAATATATTATAGTTACAAAATTACAAAATTT
TTATTTAATTCACTAGGCTTTTAAAATCTCTGCTACATAGCATTCTCTGTTCGCACCGCCGGCAC
TAATCGTATGCTCTCATTCCCCTTCTCTTTTACAATTTAGTTTTTTCATTAAACAACTTTGAATG
TCAAGAATCTGTGAATCAAAATCCAAACAATTTTCTTCTCAAATCTTCGA
Found at i:1068491 original size:44 final size:44
Alignment explanation
Indices: 1068428--1068762 Score: 244
Period size: 44 Copynumber: 7.5 Consensus size: 44
1068418 CGTTATGGTG
* * * * * * *
1068428 AATCTTATCTCTCTAAAGTTTCAGAGAAGCAGATTAAAGCCACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTAAAGACACA
** *
1068472 AATCTTATCTCTTTGAAGTTACAGTGGAGTAGATTAAAGATACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTAAAGACACA
** * *
1068516 AATCCAATCTCCATGAAGTTACAGTGGATTAGATTGAAA-ACACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGTAGATT-AAAGACACA
* *
1068560 AATCTTATCTCCCTGAAGTTGCAGTGGAGTATATTGAAA-ACACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGTAGATT-AAAGACACA
* * * * * * *
1068604 AATCTTATCTCCTTAAAGTTGCAGTCGAGCAGATTAAAGATACG
1 AATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTAAAGACACA
* * ** *
1068648 AATCTTATTTCCCTGAAGTTGCAGTGGAACATATTAAAGCTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTAAAG--AC-----ACA
* * ** * *
1068699 AATCTTATCTCCCTGAAGTTGCAGTGAAAAAAATTAAAGTCACA
1 AATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTAAAGACACA
*
1068743 AAT-TTCATCTCCCTAAAGTT
1 AATCTT-ATCTCCCTGAAGTT
1068763 GTAGTGGAAC
Statistics
Matches: 240, Mismatches: 41, Indels: 20
0.80 0.14 0.07
Matches are distributed among these distances:
43 5 0.02
44 193 0.80
45 3 0.01
46 1 0.00
49 1 0.00
51 37 0.15
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTAAAGACACA
Found at i:1068552 original size:233 final size:233
Alignment explanation
Indices: 1068144--1068584 Score: 523
Period size: 233 Copynumber: 1.9 Consensus size: 233
1068134 GTGAAACCAT
* * *
1068144 AAATCCTATACCCCTGAAGTTGCAGTGGAATAGATTGAAGTTATCGTGGCAAATCTTGTCTTCCT
1 AAATCCTATACCCCTGAAGTTGCAGTGGAATAGATTGAAGTCATCATGGCAAATCTTATCTTCCT
* * *
1068209 GAAGTTGCAGTAGAGCAGATTAAAGCCACAAATTCTATCCCCCTGAAGTTATAGTTGAGCAGATT
66 AAAGTTGCAGTAGAGCAGATTAAAGCCACAAATTCTATCCCCCTGAAGTTACAGTGGAGCAGATT
* *** * * ** * * *
1068274 GAAGATACAAAAATTTTCTCCTAGAAGTTGCAGTGGAGCAGATTGAATATGCGAATCTTATTTTC
131 AAAGATACAAAAACAATCTCCTAGAAGTTACAGTGGAGCAGATTGAAAACACAAATCTTATCTCC
1068339 CTGAAGTTGCAGTCGAATAAATTAAATCTACAAATCAC
196 CTGAAGTTGCAGTCGAATAAATTAAATCTACAAATCAC
* * * **
1068377 AAATCCTATACCCCTGAAGTTGCAGTAGG-ATGGATTGAAGTCGTTATGGTGAATCTTATC-TCT
1 AAATCCTATACCCCTGAAGTTGCAGT-GGAATAGATTGAAGTCATCATGGCAAATCTTATCTTC-
* * ** *
1068440 CTAAAGTTTCAG-AGAAGCAGATTAAAGCCACAAA-TCTTATCTCTTTGAAGTTACAGTGGAGTA
64 CTAAAGTTGCAGTAG-AGCAGATTAAAGCCACAAATTC-TATCCCCCTGAAGTTACAGTGGAGCA
** **
1068503 GATTAAAGATACAAATCCAATCTCC-ATGAAGTTACAGTGGATTAGATTGAAAACACAAATCTTA
127 GATTAAAGATACAAAAACAATCTCCTA-GAAGTTACAGTGGAGCAGATTGAAAACACAAATCTTA
1068567 TCTCCCTGAAGTTGCAGT
191 TCTCCCTGAAGTTGCAGT
1068585 GGAGTATATT
Statistics
Matches: 172, Mismatches: 31, Indels: 10
0.81 0.15 0.05
Matches are distributed among these distances:
232 7 0.04
233 163 0.95
234 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (233 bp):
AAATCCTATACCCCTGAAGTTGCAGTGGAATAGATTGAAGTCATCATGGCAAATCTTATCTTCCT
AAAGTTGCAGTAGAGCAGATTAAAGCCACAAATTCTATCCCCCTGAAGTTACAGTGGAGCAGATT
AAAGATACAAAAACAATCTCCTAGAAGTTACAGTGGAGCAGATTGAAAACACAAATCTTATCTCC
CTGAAGTTGCAGTCGAATAAATTAAATCTACAAATCAC
Found at i:1068724 original size:51 final size:50
Alignment explanation
Indices: 1068557--1068865 Score: 227
Period size: 44 Copynumber: 6.6 Consensus size: 50
1068547 GATTGAAAAC
** **
1068557 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTATATT---G--AAA-AC
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACATATTAAAGCTAAAGTT
* * * * *
1068601 ACAAATCTTATCTCCTTAAAGTTGCAGTCGAGCAGATTAAAG----A--T
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACATATTAAAGCTAAAGTT
* *
1068645 ACGAATCTTATTTCCCTGAAGTTGCAGTGGAACATATTAAAGCTACAAGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACATATTAAAGCTA-AAGTT
* *
1068696 ACAAATCTTATCTCCCTGAAGTTGCAGT-GAA-A-A--AAA-TTAAAGTC
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACATATTAAAGCTAAAGTT
* * *
1068740 ACAAAT-TTCATCTCCCTAAAGTTGTAGTGGAACAAATTAAAGCT-AA---
1 ACAAATCTT-ATCTCCCTGAAGTTGCAGTGGAACATATTAAAGCTAAAGTT
* * * * *
1068786 A-AAA-CTTATTTCCCTAAAGTTGTAATGGAACATATTGAAGCTACAAGTT
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACATATTAAAGCTA-AAGTT
1068835 ACAAATCTTATCTCCCTGAAGTTGCAGTGGA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGA
1068866 GCAAATTGAA
Statistics
Matches: 212, Mismatches: 28, Indels: 43
0.75 0.10 0.15
Matches are distributed among these distances:
43 2 0.01
44 126 0.59
45 11 0.05
46 7 0.03
47 2 0.01
48 1 0.00
49 8 0.04
50 7 0.03
51 48 0.23
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.30
Consensus pattern (50 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAACATATTAAAGCTAAAGTT
Found at i:1068737 original size:95 final size:95
Alignment explanation
Indices: 1068601--1068784 Score: 230
Period size: 95 Copynumber: 1.9 Consensus size: 95
1068591 TATTGAAAAC
* ** * * * *
1068601 ACAAATCTTATCTCCTTAAAGTTGCAGTCGAGCAGATTAAAGAT-ACGAATCTT-ATTTCCCTGA
1 ACAAATCTTATCTCCCTAAAGTTGCAGTCGAAAAAATTAAAG-TCACAAAT-TTCATCTCCCTAA
*
1068664 AGTTGCAGTGGAACATATTAAAGCTACAAGTT
64 AGTTGCAGTGGAACAAATTAAAGCTACAAGTT
*
1068696 ACAAATCTTATCTCCCTGAAGTTGCAGT-GAAAAAAATTAAAGTCACAAATTTCATCTCCCTAAA
1 ACAAATCTTATCTCCCTAAAGTTGCAGTCG-AAAAAATTAAAGTCACAAATTTCATCTCCCTAAA
*
1068760 GTTGTAGTGGAACAAATTAAAGCTA
65 GTTGCAGTGGAACAAATTAAAGCTA
1068785 AAAAACTTAT
Statistics
Matches: 76, Mismatches: 10, Indels: 6
0.83 0.11 0.07
Matches are distributed among these distances:
94 4 0.05
95 72 0.95
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (95 bp):
ACAAATCTTATCTCCCTAAAGTTGCAGTCGAAAAAATTAAAGTCACAAATTTCATCTCCCTAAAG
TTGCAGTGGAACAAATTAAAGCTACAAGTT
Found at i:1068808 original size:44 final size:44
Alignment explanation
Indices: 1068702--1068909 Score: 143
Period size: 44 Copynumber: 4.6 Consensus size: 44
1068692 AGTTACAAAT
* * * * * *
1068702 CTTATCTCCCTGAAGTTGCAGTGAAAAAAATTAAAG-TCACAAA
1 CTTATCTCCCTAAAGTTGTAGTGGAACAAATTAAAGCTAAAAAA
*
1068745 TTTCATCTCCCTAAAGTTGTAGTGGAACAAATTAAAGCTAAAAAA
1 CTT-ATCTCCCTAAAGTTGTAGTGGAACAAATTAAAGCTAAAAAA
* * * *
1068790 CTTATTTCCCTAAAGTTGTAATGGAACATATTGAAGCTACAAGTTACAAA
1 CTTATCTCCCTAAAGTTGTAGTGGAACAAATTAAAGCT--AA---A-AAA
* * * ** *
1068840 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAA-CTACTAAT
1 -CTTATCTCCCTAAAGTTGTAGTGGAACAAATT-AAAGCTAAAAAA
*
1068885 CTTATCTCCCCGAAA-TTGTAGTGGA
1 CTTATCT-CCCTAAAGTTGTAGTGGA
1068910 GCAGATTGAA
Statistics
Matches: 129, Mismatches: 25, Indels: 21
0.74 0.14 0.12
Matches are distributed among these distances:
43 2 0.02
44 76 0.59
45 14 0.11
46 2 0.02
49 2 0.02
50 3 0.02
51 28 0.22
52 2 0.02
ACGTcount: A:0.37, C:0.18, G:0.15, T:0.30
Consensus pattern (44 bp):
CTTATCTCCCTAAAGTTGTAGTGGAACAAATTAAAGCTAAAAAA
Found at i:1068904 original size:95 final size:95
Alignment explanation
Indices: 1068735--1068920 Score: 216
Period size: 95 Copynumber: 2.0 Consensus size: 95
1068725 AAAAAAATTA
* *
1068735 AAGTCACAAATTTCATCTCCCTAAAGTTGTAGTGGAACAAATTAAAGCTAAAAAACTTATTTCCC
1 AAGTCACAAATTTCATCTCCCTAAAGTTGCAGTGGAACAAATTAAAGCTAAAAAACTTATTCCCC
* *
1068800 TAAAGTTGTAATGGAACATATTGAAGCTAC
66 GAAAGTTGTAATGGAACAGATTGAAGCTAC
* * * ** *
1068830 AAGTTACAAATCTT-ATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAA-CTACTAATCTTATCTC
1 AAGTCACAAAT-TTCATCTCCCTAAAGTTGCAGTGGAACAAATT-AAAGCTAAAAAACTTAT-TC
* *
1068893 CCCGAAA-TTGTAGTGGAGCAGATTGAAG
63 CCCGAAAGTTGTAATGGAACAGATTGAAG
1068921 TGACAATTCC
Statistics
Matches: 76, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
95 64 0.84
96 12 0.16
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.29
Consensus pattern (95 bp):
AAGTCACAAATTTCATCTCCCTAAAGTTGCAGTGGAACAAATTAAAGCTAAAAAACTTATTCCCC
GAAAGTTGTAATGGAACAGATTGAAGCTAC
Found at i:1068968 original size:139 final size:138
Alignment explanation
Indices: 1068557--1068952 Score: 460
Period size: 139 Copynumber: 2.8 Consensus size: 138
1068547 GATTGAAAAC
* * *
1068557 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGTATATTGAAAAC-ACAAATCTTATCTCCTTAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGAAAATTG-AAACTACAAATCTTATCTCCCTAAA
* * * * *
1068621 GTTGCAGTCGAGCAGATTAAAGATACGAATCTTATTTCCCTGAAGTTGCAGTGGAACATATTAAA
65 GTTGTAGTGGAGCAGATTAAAGATAC-AATCTTATTTCCCTAAAGTTGCAATGGAACATATTGAA
1068686 GCTACAAGTT
129 GCTACAAGTT
* * *
1068696 ACAAATCTTATCTCCCTGAAGTTGCAGTGAAAAAAATT-AAAGTCACAAAT-TTCATCTCCCTAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGAAAATTGAAACT-ACAAATCTT-ATCTCCCTAA
* * * * * *
1068759 AGTTGTAGTGGAACAAATTAAAGCTAAAAAACTTATTTCCCTAAAGTTGTAATGGAACATATTGA
64 AGTTGTAGTGGAGCAGATTAAAGAT-ACAATCTTATTTCCCTAAAGTTGCAATGGAACATATTGA
1068824 AGCTACAAGTT
128 AGCTACAAGTT
* * *
1068835 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAAATTGAAACTACTAATCTTATCTCCCCGAAA
1 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGAAAATTGAAACTACAAATCTTATCT-CCCTAAA
* * ** *
1068900 -TTGTAGTGGAGCAGATTGAAG-TGACAATTCCTATAACCCTTAAGTTGCAATGG
65 GTTGTAGTGGAGCAGATTAAAGAT-ACAA-TCTTATTTCCCTAAAGTTGCAATGG
1068953 GTTAGAACGA
Statistics
Matches: 215, Mismatches: 34, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
137 3 0.01
138 6 0.03
139 193 0.90
140 13 0.06
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (138 bp):
ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGAAAATTGAAACTACAAATCTTATCTCCCTAAAG
TTGTAGTGGAGCAGATTAAAGATACAATCTTATTTCCCTAAAGTTGCAATGGAACATATTGAAGC
TACAAGTT
Found at i:1071871 original size:3 final size:3
Alignment explanation
Indices: 1071863--1071895 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
1071853 GATGCAGCTC
1071863 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1071896 AAGAAGAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:1080752 original size:14 final size:13
Alignment explanation
Indices: 1080720--1080760 Score: 50
Period size: 14 Copynumber: 3.2 Consensus size: 13
1080710 AATCAAGTTT
1080720 TAATA-ATAAAT-
1 TAATATATAAATA
1080731 TAATATATAAATA
1 TAATATATAAATA
*
1080744 TACATATATTAATA
1 TA-ATATATAAATA
1080758 TAA
1 TAA
1080761 ATTTTTGAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 5 0.19
12 6 0.23
13 3 0.12
14 12 0.46
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (13 bp):
TAATATATAAATA
Found at i:1091120 original size:17 final size:15
Alignment explanation
Indices: 1091080--1091126 Score: 51
Period size: 17 Copynumber: 2.9 Consensus size: 15
1091070 CCAGGGCATT
1091080 TTCTTTTTGCTTTGTTG
1 TTCTTTTT-CTTT-TTG
1091097 TTC-TTTTCTTTTCTG
1 TTCTTTTTCTTTT-TG
1091112 CTTCTTTTTCTTTTT
1 -TTCTTTTTCTTTTT
1091127 TTAATCTGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
14 1 0.04
15 6 0.22
16 8 0.30
17 12 0.44
ACGTcount: A:0.00, C:0.17, G:0.09, T:0.74
Consensus pattern (15 bp):
TTCTTTTTCTTTTTG
Found at i:1092184 original size:20 final size:20
Alignment explanation
Indices: 1092156--1092194 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
1092146 CATTTTTTTG
*
1092156 TGCTAGTTCCAGAATTGTTT
1 TGCTAGTTCCAGAACTGTTT
*
1092176 TGCTTGTTCCAGAACTGTT
1 TGCTAGTTCCAGAACTGTT
1092195 GCGGTTTCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.44
Consensus pattern (20 bp):
TGCTAGTTCCAGAACTGTTT
Found at i:1098147 original size:16 final size:16
Alignment explanation
Indices: 1098128--1098179 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
1098118 GATTTGCTAT
* *
1098128 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
1098144 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
1098160 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
1098176 TACA
1 TACA
1098180 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:1102685 original size:6 final size:6
Alignment explanation
Indices: 1102674--1102714 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
1102664 TAAATTATAT
* * *
1102674 TATTAG TATTAG TATTAG TATTAG AATTAT TATTAA TATTA
1 TATTAG TATTAG TATTAG TATTAG TATTAG TATTAG TATTA
1102715 TTGTTATTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.51
Consensus pattern (6 bp):
TATTAG
Found at i:1104242 original size:12 final size:12
Alignment explanation
Indices: 1104225--1104255 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
1104215 CCTCACACGT
1104225 CCGTGTGCTAGG
1 CCGTGTGCTAGG
1104237 CCGTGTGCTAGG
1 CCGTGTGCTAGG
*
1104249 CTGTGTG
1 CCGTGTG
1104256 AAAACTAGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.06, C:0.23, G:0.42, T:0.29
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:1113361 original size:12 final size:12
Alignment explanation
Indices: 1113344--1113373 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
1113334 GACCACACTC
1113344 CCGTGTGCCAGG
1 CCGTGTGCCAGG
1113356 CCGTGTGCCAGG
1 CCGTGTGCCAGG
*
1113368 TCGTGT
1 CCGTGT
1113374 AAAAACTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.07, C:0.30, G:0.40, T:0.23
Consensus pattern (12 bp):
CCGTGTGCCAGG
Found at i:1122213 original size:27 final size:27
Alignment explanation
Indices: 1122175--1122239 Score: 121
Period size: 27 Copynumber: 2.4 Consensus size: 27
1122165 CCTGTCTAGT
1122175 AGGCGCCAATGAAGGAGCATCATGGAG
1 AGGCGCCAATGAAGGAGCATCATGGAG
*
1122202 AGGCGCCAATGAAGGAGCCTCATGGAG
1 AGGCGCCAATGAAGGAGCATCATGGAG
1122229 AGGCGCCAATG
1 AGGCGCCAATG
1122240 GTGCCCTCTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.31, C:0.22, G:0.37, T:0.11
Consensus pattern (27 bp):
AGGCGCCAATGAAGGAGCATCATGGAG
Found at i:1122380 original size:3 final size:3
Alignment explanation
Indices: 1122374--1122417 Score: 65
Period size: 3 Copynumber: 15.3 Consensus size: 3
1122364 GAGAGAAAGG
*
1122374 AGA AGA AGA A-A AGG AGA AGA AGA AGA AG- AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
1122418 AGAAAAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
2 4 0.11
3 33 0.89
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:1122394 original size:17 final size:17
Alignment explanation
Indices: 1122374--1122418 Score: 72
Period size: 17 Copynumber: 2.6 Consensus size: 17
1122364 GAGAGAAAGG
*
1122374 AGAAGAAGAAAAGGAGA
1 AGAAGAAGAAAAGAAGA
*
1122391 AGAAGAAGAAGAGAAGA
1 AGAAGAAGAAAAGAAGA
1122408 AGAAGAAGAAA
1 AGAAGAAGAAA
1122419 GAAAAAAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (17 bp):
AGAAGAAGAAAAGAAGA
Found at i:1122412 original size:14 final size:14
Alignment explanation
Indices: 1122373--1122421 Score: 75
Period size: 14 Copynumber: 3.6 Consensus size: 14
1122363 AGAGAGAAAG
1122373 GAGAAGAAGAA-AA
1 GAGAAGAAGAAGAA
1122386 GGAGAAGAAGAAGAA
1 -GAGAAGAAGAAGAA
1122401 GAGAAGAAGAAGAA
1 GAGAAGAAGAAGAA
1122415 GA-AAGAA
1 GAGAAGAA
1122422 AAAAAATGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
13 5 0.15
14 27 0.79
15 2 0.06
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (14 bp):
GAGAAGAAGAAGAA
Found at i:1122686 original size:49 final size:48
Alignment explanation
Indices: 1122593--1123002 Score: 267
Period size: 49 Copynumber: 8.5 Consensus size: 48
1122583 TCGGATTAGT
* * *
1122593 ATTTTGTATGAATATTCTAATTTTT-TTTG--TA-TG-AATA-TTGTA
1 ATTTTGTATGAATATTGTAATTTTTGTATGAATATTGTAATATTTATA
*
1122635 ATTTTTTATGAATATTGTAA-TTTTGTATGAATATTGTAATTATTTTATA
1 ATTTTGTATGAATATTGTAATTTTTGTATGAATATTGTAA-TA-TTTATA
*** * * * * * * * *
1122684 ATTAAATTTGTAT-TTATAGTTTTGGATTAGTAAATTTTTGT-ATGAATATTGTA
1 ATTTTGTATGAATATTGTAATTTTTG--TA-TGAA-TATTGTAAT--AT-TTATA
*
1122737 ATTTTGTATGAATATTATAATTTTTTTTGTATGAATATTGTAATA-TTATA
1 ATTTTGTATGAATATTGTAA---TTTTTGTATGAATATTGTAATATTTATA
* * * *
1122787 GTTTTGTATGAATATTGCAATTTTTTTGTACGAATATTGTAAT-TTTGTA
1 ATTTTGTATGAATATTGTAA--TTTTTGTATGAATATTGTAATATTTATA
* *
1122836 ACTTTGTATGAATATTATAATTTTTTTGTATGAATATTGTAATA-TTATA
1 ATTTTGTATGAATATTGTAA--TTTTTGTATGAATATTGTAATATTTATA
* *
1122885 ATTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGTAATA-TTGTA
1 ATTTTGTATGAATATTGTAA--TTTTTGTATGAATATTGTAATATTTATA
* ** *
1122934 ATTTTGTATGAATATTGTAATGTGGGGAT--ATATTGTAATATTGTA-A
1 ATTTTGTATGAATATTGTAATTTTTGTATGAATATTGTAATATT-TATA
*
1122980 TTTTTTGTATGAATATTGTAATT
1 -ATTTTGTATGAATATTGTAATT
1123003 ATTTTATAAT
Statistics
Matches: 294, Mismatches: 48, Indels: 47
0.76 0.12 0.12
Matches are distributed among these distances:
41 4 0.01
42 21 0.07
44 2 0.01
45 13 0.04
46 4 0.01
47 28 0.10
48 4 0.01
49 148 0.50
50 21 0.07
51 3 0.01
52 6 0.02
53 23 0.08
54 10 0.03
55 2 0.01
57 5 0.02
ACGTcount: A:0.31, C:0.01, G:0.14, T:0.54
Consensus pattern (48 bp):
ATTTTGTATGAATATTGTAATTTTTGTATGAATATTGTAATATTTATA
Found at i:1122799 original size:27 final size:25
Alignment explanation
Indices: 1122728--1122954 Score: 224
Period size: 27 Copynumber: 9.1 Consensus size: 25
1122718 TTTTTGTATG
*
1122728 AATATTGTAATTTTGTATGAATATTAT
1 AATATT-T-ATTTTGTATGAATATTGT
1122755 AAT-TTT-TTTTGTATGAATATTGT
1 AATATTTATTTTGTATGAATATTGT
1122778 AATATTATAGTTTTGTATGAATATTG-
1 AATATT-TA-TTTTGTATGAATATTGT
* *
1122804 CA-ATTT-TTTTGTACGAATATTGT
1 AATATTTATTTTGTATGAATATTGT
* * *
1122827 AATTTTGTAACTTTGTATGAATATTAT
1 AATATT-T-ATTTTGTATGAATATTGT
1122854 -A-ATTT-TTTTGTATGAATATTGT
1 AATATTTATTTTGTATGAATATTGT
1122876 AATATTATAATTTTGTATGAATATTG-
1 AATATT-T-ATTTTGTATGAATATTGT
*
1122902 CA-ATTT-TTTTGTATGAATATTGT
1 AATATTTATTTTGTATGAATATTGT
1122925 AATATTGTAATTTTGTATGAATATTGT
1 AATATT-T-ATTTTGTATGAATATTGT
1122952 AAT
1 AAT
1122955 GTGGGGATAT
Statistics
Matches: 168, Mismatches: 13, Indels: 38
0.77 0.06 0.17
Matches are distributed among these distances:
22 46 0.27
23 22 0.13
24 13 0.08
25 13 0.08
26 5 0.03
27 69 0.41
ACGTcount: A:0.32, C:0.02, G:0.13, T:0.53
Consensus pattern (25 bp):
AATATTTATTTTGTATGAATATTGT
Found at i:1122810 original size:19 final size:20
Alignment explanation
Indices: 1122788--1122832 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
1122778 AATATTATAG
*
1122788 TTTTGTATGAATATTGCAATTT
1 TTTTGTACGAATATTGCAA--T
*
1122810 TTTTGTACGAATATTGTAAT
1 TTTTGTACGAATATTGCAAT
1122830 TTT
1 TTT
1122833 GTAACTTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.19
22 17 0.81
ACGTcount: A:0.27, C:0.04, G:0.13, T:0.56
Consensus pattern (20 bp):
TTTTGTACGAATATTGCAAT
Found at i:1122834 original size:19 final size:19
Alignment explanation
Indices: 1122778--1122835 Score: 53
Period size: 22 Copynumber: 2.9 Consensus size: 19
1122768 TGAATATTGT
* * *
1122778 AATATTATAGTTTTGTATG
1 AATATTGTAATTTTGTACG
*
1122797 AATATTGCAATTTTTTTGTACG
1 AATATTGTAA---TTTTGTACG
1122819 AATATTGTAATTTTGTA
1 AATATTGTAATTTTGTA
1122836 ACTTTGTATG
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
19 14 0.45
22 17 0.55
ACGTcount: A:0.31, C:0.03, G:0.14, T:0.52
Consensus pattern (19 bp):
AATATTGTAATTTTGTACG
Found at i:1122894 original size:98 final size:98
Alignment explanation
Indices: 1122728--1122954 Score: 400
Period size: 98 Copynumber: 2.3 Consensus size: 98
1122718 TTTTTGTATG
*
1122728 AATATTGTAATTTTGTATGAATATTATAATTTTTTTTGTATGAATATTGTAATATTATAGTTTTG
1 AATATTGTAATTTTGTATGAATATTATAA-TTTTTTTGTATGAATATTGTAATATTATAATTTTG
1122793 TATGAATATTGCAATTTTTTTGTACGAATATTGT
65 TATGAATATTGCAATTTTTTTGTACGAATATTGT
* *
1122827 AATTTTGTAACTTTGTATGAATATTATAATTTTTTTGTATGAATATTGTAATATTATAATTTTGT
1 AATATTGTAATTTTGTATGAATATTATAATTTTTTTGTATGAATATTGTAATATTATAATTTTGT
*
1122892 ATGAATATTGCAATTTTTTTGTATGAATATTGT
66 ATGAATATTGCAATTTTTTTGTACGAATATTGT
*
1122925 AATATTGTAATTTTGTATGAATATTGTAAT
1 AATATTGTAATTTTGTATGAATATTATAAT
1122955 GTGGGGATAT
Statistics
Matches: 121, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
98 94 0.78
99 27 0.22
ACGTcount: A:0.32, C:0.02, G:0.13, T:0.53
Consensus pattern (98 bp):
AATATTGTAATTTTGTATGAATATTATAATTTTTTTGTATGAATATTGTAATATTATAATTTTGT
ATGAATATTGCAATTTTTTTGTACGAATATTGT
Found at i:1122900 original size:19 final size:19
Alignment explanation
Indices: 1122876--1122933 Score: 53
Period size: 22 Copynumber: 2.9 Consensus size: 19
1122866 TGAATATTGT
1122876 AATATTATAATTTTGTATG
1 AATATTATAATTTTGTATG
**
1122895 AATATTGCAATTTTTTTGTATG
1 AATATT---ATAATTTTGTATG
* *
1122917 AATATTGTAATATTGTA
1 AATATTATAATTTTGTA
1122934 ATTTTGTATG
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
19 13 0.43
22 17 0.57
ACGTcount: A:0.34, C:0.02, G:0.12, T:0.52
Consensus pattern (19 bp):
AATATTATAATTTTGTATG
Found at i:1122954 original size:19 final size:19
Alignment explanation
Indices: 1122593--1122835 Score: 137
Period size: 19 Copynumber: 12.4 Consensus size: 19
1122583 TCGGATTAGT
*
1122593 ATTTTGTATGAATATTCTA
1 ATTTTGTATGAATATTGTA
1122612 ATTTTTTTTGTATGAATATTGTA
1 A----TTTTGTATGAATATTGTA
*
1122635 ATTTTTTATGAATATTGTA
1 ATTTTGTATGAATATTGTA
1122654 ATTTTGTATGAATATTGTA
1 ATTTTGTATGAATATTGTA
*
1122673 ATTATTTTAT-AATTAAATTTGT-
1 ATT-TTGTATGAA-T--A-TTGTA
* * *
1122695 ATTTATAGTTTTGGAT-TAGTAA
1 ATTT-T-G-TATGAATATTGT-A
1122717 ATTTTTGTATGAATATTGTA
1 A-TTTTGTATGAATATTGTA
*
1122737 ATTTTGTATGAATATTATA
1 ATTTTGTATGAATATTGTA
* *
1122756 ATTTTTTTTG--TA-TG-A
1 ATTTTGTATGAATATTGTA
* *
1122771 ATATTG--T-AATATTATA
1 ATTTTGTATGAATATTGTA
* *
1122787 GTTTTGTATGAATATTGCA
1 ATTTTGTATGAATATTGTA
*
1122806 ATTTTTTTGTACGAATATTGTA
1 A---TTTTGTATGAATATTGTA
1122828 ATTTTGTA
1 ATTTTGTA
1122836 ACTTTGTATG
Statistics
Matches: 172, Mismatches: 25, Indels: 54
0.69 0.10 0.22
Matches are distributed among these distances:
13 1 0.01
14 2 0.01
15 6 0.03
16 6 0.03
17 2 0.01
18 1 0.01
19 80 0.47
20 16 0.09
21 5 0.03
22 24 0.14
23 25 0.15
24 3 0.02
25 1 0.01
ACGTcount: A:0.31, C:0.01, G:0.13, T:0.55
Consensus pattern (19 bp):
ATTTTGTATGAATATTGTA
Found at i:1123076 original size:60 final size:60
Alignment explanation
Indices: 1122995--1123116 Score: 165
Period size: 60 Copynumber: 2.0 Consensus size: 60
1122985 TGTATGAATA
* * * * * *
1122995 TTGTAATTATTTTATAATTAATTTGTTAGTAATTTGGGATTATGTTATAAATTTTTGTGT
1 TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
*
1123055 TTGTAATTA-TTTAAAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAGTTGTTGTGT
1 TTGTAATTATTTTAAAA-TTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
1123115 TT
1 TT
1123117 AGTTTAGTAT
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
59 6 0.11
60 48 0.89
ACGTcount: A:0.30, C:0.01, G:0.15, T:0.54
Consensus pattern (60 bp):
TTGTAATTATTTTAAAATTAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
Found at i:1123271 original size:15 final size:15
Alignment explanation
Indices: 1123230--1123271 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
1123220 GTTAACTCAT
*
1123230 TTAATTTTTATATAA
1 TTAAATTTTATATAA
*
1123245 TGTAACTTTTATATAA
1 T-TAAATTTTATATAA
1123261 TTAAATTTTAT
1 TTAAATTTTAT
1123272 TTGATTTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (15 bp):
TTAAATTTTATATAA
Found at i:1125954 original size:22 final size:21
Alignment explanation
Indices: 1125919--1125963 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
1125909 TACCTAATTT
*
1125919 TTTTCTTCTTTTCCTTCATTC
1 TTTTCTTCTCTTCCTTCATTC
*
1125940 TTTTCTTCTGCTTCCTTCCTTC
1 TTTTCTTCT-CTTCCTTCATTC
1125962 TT
1 TT
1125964 ATTTCTTTCG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.02, C:0.31, G:0.02, T:0.64
Consensus pattern (21 bp):
TTTTCTTCTCTTCCTTCATTC
Found at i:1126078 original size:27 final size:27
Alignment explanation
Indices: 1126048--1126104 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
1126038 CTTTCAGAAT
*
1126048 GGCACCACCATTGGCGCCTCCCAGGTA
1 GGCACCACCATTGGCGCCTCCCAGATA
*
1126075 GGCACCACCATTGGCGCCTCCTAGATA
1 GGCACCACCATTGGCGCCTCCCAGATA
1126102 GGC
1 GGC
1126105 GCCAATACTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.19, C:0.39, G:0.26, T:0.16
Consensus pattern (27 bp):
GGCACCACCATTGGCGCCTCCCAGATA
Found at i:1132905 original size:25 final size:25
Alignment explanation
Indices: 1132851--1132921 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
1132841 AGATCTCTTT
* *
1132851 CGAGCCATATAACAGGAAGTTTATG
1 CGAGCCATATAACAGGAAGCTTATC
* *
1132876 TGAGCCATGTAACAGGAAGCTTATC
1 CGAGCCATATAACAGGAAGCTTATC
** *
1132901 CGAGCTGTATAATAGGAAGCT
1 CGAGCCATATAACAGGAAGCT
1132922 CATAAGAGCC
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (25 bp):
CGAGCCATATAACAGGAAGCTTATC
Found at i:1136960 original size:44 final size:44
Alignment explanation
Indices: 1136897--1136982 Score: 136
Period size: 44 Copynumber: 2.0 Consensus size: 44
1136887 GGCTGTTACA
** * *
1136897 GCGGGTATTTGCTGTGTATCCACAACTAGAGGTAGATTCCATTT
1 GCGGGTATTTGCCCTGTATCCACAACCAGAGGCAGATTCCATTT
1136941 GCGGGTATTTGCCCTGTATCCACAACCAGAGGCAGATTCCAT
1 GCGGGTATTTGCCCTGTATCCACAACCAGAGGCAGATTCCAT
1136983 CTGTGGGTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.23, C:0.23, G:0.24, T:0.29
Consensus pattern (44 bp):
GCGGGTATTTGCCCTGTATCCACAACCAGAGGCAGATTCCATTT
Found at i:1137940 original size:75 final size:75
Alignment explanation
Indices: 1137817--1137968 Score: 286
Period size: 75 Copynumber: 2.0 Consensus size: 75
1137807 ATCTAAACCG
*
1137817 TTTTTTTTTAACTTGTGAGCTTTTTAGAAAATAGATTAAGTTTTCATTTTAAAATAAATAAATAT
1 TTTTTTTTAAACTTGTGAGCTTTTTAGAAAATAGATTAAGTTTTCATTTTAAAATAAATAAATAT
1137882 TTTAAATTGA
66 TTTAAATTGA
*
1137892 TTTTTTTTAAACTTGTGAGCTTTTTTGAAAATAGATTAAGTTTTCATTTTAAAATAAATAAATAT
1 TTTTTTTTAAACTTGTGAGCTTTTTAGAAAATAGATTAAGTTTTCATTTTAAAATAAATAAATAT
1137957 TTTAAATTGA
66 TTTAAATTGA
1137967 TT
1 TT
1137969 GCTTTATAAA
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (75 bp):
TTTTTTTTAAACTTGTGAGCTTTTTAGAAAATAGATTAAGTTTTCATTTTAAAATAAATAAATAT
TTTAAATTGA
Found at i:1138361 original size:5 final size:5
Alignment explanation
Indices: 1138351--1138381 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
1138341 TGAGCATTCG
1138351 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
1138382 AATTTTCGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:1139212 original size:9 final size:9
Alignment explanation
Indices: 1139198--1139234 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
1139188 TATAGTTTGA
1139198 TATTCGAAT
1 TATTCGAAT
1139207 TATTCGAAT
1 TATTCGAAT
*
1139216 TATTCGAGT
1 TATTCGAAT
1139225 TATTCGAAT
1 TATTCGAAT
1139234 T
1 T
1139235 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:1143935 original size:17 final size:17
Alignment explanation
Indices: 1143913--1143946 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
1143903 AGTTAATTTA
1143913 TTAATATTTTATAAATT
1 TTAATATTTTATAAATT
1143930 TTAATATTTTATAAATT
1 TTAATATTTTATAAATT
1143947 GAAAATTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
TTAATATTTTATAAATT
Found at i:1146787 original size:12 final size:12
Alignment explanation
Indices: 1146770--1146798 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
1146760 GAAGAAGATT
1146770 AATACGGTAAGG
1 AATACGGTAAGG
1146782 AATACGGTAAGG
1 AATACGGTAAGG
1146794 AATAC
1 AATAC
1146799 ATAGAATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.45, C:0.10, G:0.28, T:0.17
Consensus pattern (12 bp):
AATACGGTAAGG
Found at i:1146849 original size:4 final size:4
Alignment explanation
Indices: 1146840--1146864 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
1146830 CTTTTCTTTA
1146840 TATT TATT TATT TATT TATT TATT T
1 TATT TATT TATT TATT TATT TATT T
1146865 TGCAGATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TATT
Found at i:1150769 original size:26 final size:26
Alignment explanation
Indices: 1150728--1150785 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
1150718 ATAAGAGCCA
** *
1150728 TAATCAAGAAGTTCACAAAGAACTTT
1 TAATCAAGAAACTCACAAAGAACCTT
* *
1150754 TAATCAAGAAACTCACGAAGAGCCTT
1 TAATCAAGAAACTCACAAAGAACCTT
1150780 TAATCA
1 TAATCA
1150786 GGAGCTCCGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.45, C:0.19, G:0.12, T:0.24
Consensus pattern (26 bp):
TAATCAAGAAACTCACAAAGAACCTT
Found at i:1157057 original size:16 final size:16
Alignment explanation
Indices: 1157036--1157067 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
1157026 ATCCTGTTTT
1157036 ATGGTACATTAATATA
1 ATGGTACATTAATATA
1157052 ATGGTACATTAATATA
1 ATGGTACATTAATATA
1157068 GATAATCGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.12, T:0.38
Consensus pattern (16 bp):
ATGGTACATTAATATA
Found at i:1157971 original size:14 final size:15
Alignment explanation
Indices: 1157949--1158025 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
1157939 CAATCAAACA
1157949 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
1157963 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
1157978 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
1157998 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
1158012 ACGGAAAA-CATTTT
1 CCAGAAAATCATTTT
1158026 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 22 0.44
15 14 0.28
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:1157990 original size:20 final size:20
Alignment explanation
Indices: 1157965--1158004 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
1157955 AATATTTTCC
*
1157965 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
1157985 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
1158005 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:1158010 original size:34 final size:35
Alignment explanation
Indices: 1157953--1158019 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
1157943 CAAACACCAG
*
1157953 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
1157988 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
1158020 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:1158026 original size:14 final size:14
Alignment explanation
Indices: 1157988--1158027 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
1157978 ACAGAAAAGT
*
1157988 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
1158002 AAATCATTTTACGG
1 AAAACATTTTACAG
1158016 AAAACATTTTAC
1 AAAACATTTTAC
1158028 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:1167997 original size:6 final size:6
Alignment explanation
Indices: 1167965--1167990 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
1167955 TTCCATTCTC
1167965 AAAATA AAAATA AAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AA
1167991 TTAAAATAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:1176515 original size:2 final size:2
Alignment explanation
Indices: 1176508--1176545 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
1176498 CAATGATTTG
1176508 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1176546 TAGTTTGTGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1180190 original size:12 final size:12
Alignment explanation
Indices: 1180175--1180199 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1180165 ATATAAGACA
1180175 ATATAAATTTAT
1 ATATAAATTTAT
1180187 ATATAAATTTAT
1 ATATAAATTTAT
1180199 A
1 A
1180200 ATCCTACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (12 bp):
ATATAAATTTAT
Found at i:1183582 original size:13 final size:13
Alignment explanation
Indices: 1183564--1183591 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1183554 TGCCCCTAAC
1183564 TTACGGGGTATGA
1 TTACGGGGTATGA
1183577 TTACGGGGTATGA
1 TTACGGGGTATGA
1183590 TT
1 TT
1183592 TTTCCTTGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.36, T:0.36
Consensus pattern (13 bp):
TTACGGGGTATGA
Found at i:1195254 original size:22 final size:23
Alignment explanation
Indices: 1195226--1195277 Score: 72
Period size: 22 Copynumber: 2.3 Consensus size: 23
1195216 CTTATTCTTT
1195226 AAAAAAATAGCAAAG-AAAAAAG-
1 AAAAAAATAG-AAAGCAAAAAAGC
*
1195248 AAAAAAATAGAAAGCAAAAACGC
1 AAAAAAATAGAAAGCAAAAAAGC
1195271 AAAAAAA
1 AAAAAAA
1195278 AACCACAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 4 0.15
22 16 0.59
23 7 0.26
ACGTcount: A:0.77, C:0.08, G:0.12, T:0.04
Consensus pattern (23 bp):
AAAAAAATAGAAAGCAAAAAAGC
Found at i:1195336 original size:3 final size:3
Alignment explanation
Indices: 1195328--1195390 Score: 85
Period size: 3 Copynumber: 21.3 Consensus size: 3
1195318 CTTCTTTTCC
*
1195328 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TATT TAT TTT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT
*
1195374 TAC TAT T-T TAT T-T TAT T
1 TAT TAT TAT TAT TAT TAT T
1195391 TTCATTTTTA
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
2 4 0.08
3 46 0.87
4 3 0.06
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.70
Consensus pattern (3 bp):
TAT
Found at i:1195403 original size:6 final size:6
Alignment explanation
Indices: 1195330--1195403 Score: 60
Period size: 6 Copynumber: 12.0 Consensus size: 6
1195320 TCTTTTCCTA
* * * * *
1195330 TTATTA TTATTA TTATTA TTATTA TTATTA TTATTAT TTATTT TTACTATT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATT-T TTATTT TTA-T-TT
*
1195381 TTA-TT TTATTT TCATTT TTATTT
1 TTATTT TTATTT TTATTT TTATTT
1195404 GAGACACCGA
Statistics
Matches: 61, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
5 5 0.08
6 45 0.74
7 6 0.10
8 5 0.08
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (6 bp):
TTATTT
Found at i:1201143 original size:3 final size:3
Alignment explanation
Indices: 1201135--1201166 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
1201125 AATCTATCCT
1201135 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1201167 TAACTAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:1201208 original size:3 final size:3
Alignment explanation
Indices: 1201200--1201231 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
1201190 AATCTATCCT
1201200 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1201232 TAACTAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:1201217 original size:65 final size:66
Alignment explanation
Indices: 1201112--1201242 Score: 255
Period size: 65 Copynumber: 2.0 Consensus size: 66
1201102 TTAACCAAGG
1201112 GTTACATAGGGCAAATCTATCCTTTATTATTATTATTATTATTATTATTATTATTTAACTAATTT
1 GTTACATAGGGCAAATCTATCCTTTATTATTATTATTATTATTATTATTATTATTTAACTAATTT
1201177 T
66 T
1201178 GTTACATA-GGCAAATCTATCCTTTATTATTATTATTATTATTATTATTATTATTTAACTAATTT
1 GTTACATAGGGCAAATCTATCCTTTATTATTATTATTATTATTATTATTATTATTTAACTAATTT
1201242 T
66 T
1201243 ATTTATTCTC
Statistics
Matches: 65, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
65 57 0.88
66 8 0.12
ACGTcount: A:0.32, C:0.09, G:0.05, T:0.53
Consensus pattern (66 bp):
GTTACATAGGGCAAATCTATCCTTTATTATTATTATTATTATTATTATTATTATTTAACTAATTT
T
Found at i:1202013 original size:44 final size:44
Alignment explanation
Indices: 1201950--1202282 Score: 434
Period size: 44 Copynumber: 7.6 Consensus size: 44
1201940 GTCACCATAG
* *
1201950 CAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* **
1201994 CAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGGCTGAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* **
1202038 CAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGGCTGAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* *
1202082 CAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGGTTGAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * * *
1202126 CAAATCCTATCTCTCTGAAGTTACAGTGGAGCAGACTAAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * *
1202170 CAAATCTTATCTCCCTGAAGTTACAATGAAGCAGATTGAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* * * *
1202214 CAAATCTCATCTCCCTGAAGTTGCAGTAGAGCATATCGAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
* *
1202258 CAATTCATATAC-CCCTGAAGTTGCA
1 CAAATCTTAT-CTCCCTGAAGTTGCA
1202283 ATGGGTTATA
Statistics
Matches: 259, Mismatches: 29, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
44 258 1.00
45 1 0.00
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.27
Consensus pattern (44 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA
Found at i:1205070 original size:51 final size:51
Alignment explanation
Indices: 1204993--1205096 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 51
1204983 CCAATTTGTT
*
1204993 ATTTCTCTCCATCAAACTCCCAACTAAATCCACTACTCATATTTTTAGTCC
1 ATTTCTCTCCATCAAACTCCCAACTAAATCCACTACTCAGATTTTTAGTCC
*
1205044 ATTTCTCTCCATCAAACTCCCCACTAAATCCACTACTCAGATTTTTAGTCC
1 ATTTCTCTCCATCAAACTCCCAACTAAATCCACTACTCAGATTTTTAGTCC
1205095 AT
1 AT
1205097 CTCAAACCCT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.29, C:0.34, G:0.03, T:0.35
Consensus pattern (51 bp):
ATTTCTCTCCATCAAACTCCCAACTAAATCCACTACTCAGATTTTTAGTCC
Found at i:1207060 original size:23 final size:25
Alignment explanation
Indices: 1207029--1207085 Score: 59
Period size: 23 Copynumber: 2.4 Consensus size: 25
1207019 TTAAACATCA
*
1207029 TATTAATTAAATCATTATCGTC-A-T
1 TATT-ATTAAATCATCATCGTCAATT
*
1207053 TATTATT--ATTATCATCGTCAATT
1 TATTATTAAATCATCATCGTCAATT
1207076 TATTATTAAA
1 TATTATTAAA
1207086 GCTGTTTCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
21 10 0.37
22 1 0.04
23 11 0.41
24 4 0.15
25 1 0.04
ACGTcount: A:0.37, C:0.11, G:0.04, T:0.49
Consensus pattern (25 bp):
TATTATTAAATCATCATCGTCAATT
Done.