Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4644

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 303

Length: 506
ACGTcount: A:0.30, C:0.18, G:0.13, T:0.39


Found at i:222 original size:107 final size:107

Alignment explanation


    Indices: 76--291  Score: 328
    Period size: 107  Copynumber: 2.0  Consensus size: 107

         66 GCAAAATTTT

                                 *            *                   *          
         76 TTTCATTTTGAACAAAACGACCCCATTTTGCTATTCTAAAAAATTTTTATTTTGTTTTTTTATAA
          1 TTTCATTTTGAACAAAACGACACCATTTTGCTATGCT-AAAAATTTTTATTTT-ATTTTTTATAA

                *                                       
        141 ATTGGTTTA-TTTTTTGCGGCATTTTTAT-AAAAAACGCCGCTA
         64 ATTGATTTATTTTTTTGCGGCATTTTTATAAAAAAACGCCGCTA

                             *      *                                        
        183 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTATTTTATTTTTTATAAAT
          1 TTTCATTTTGAACAAAACGACACCATTTTGCTATGCTAAAAATTTTTATTTTATTTTTTATAAAT

                           *   *                      
        248 TGATTTATTTTTTTGTGGCGTTTTTATAAAAAAACGCCGCTA
         66 TGATTTATTTTTTTGCGGCATTTTTATAAAAAAACGCCGCTA

              
        290 TT
          1 TT

        292 GTTTACCTTT


Statistics
Matches: 99,  Mismatches: 8, Indels: 4
        0.89            0.07        0.04

Matches are distributed among these distances:
 105   18  0.18
 106   32  0.32
 107   49  0.49

ACGTcount: A:0.29, C:0.12, G:0.11, T:0.48


Consensus pattern (107 bp):   
TTTCATTTTGAACAAAACGACACCATTTTGCTATGCTAAAAATTTTTATTTTATTTTTTATAAAT
TGATTTATTTTTTTGCGGCATTTTTATAAAAAAACGCCGCTA
Done.