Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4577

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 307

Length: 513
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26


Found at i:370 original size:16 final size:16

Alignment explanation


    Indices: 349--379  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        339 GTAAATGGAG

                            
        349 TTAGGGATTTCAGAAC
          1 TTAGGGATTTCAGAAC

                      *    
        365 TTAGGGATTTTAGAA
          1 TTAGGGATTTCAGAA

        380 AAGGAAAAAT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.32, C:0.06, G:0.26, T:0.35


Consensus pattern (16 bp):   
TTAGGGATTTCAGAAC
Done.