Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3410

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 450

Length: 751
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36


Found at i:528 original size:13 final size:13

Alignment explanation


    Indices: 512--576  Score: 71
    Period size: 12  Copynumber: 5.0  Consensus size: 13

        502 AGACTTTTCA

                         
        512 CTTCTTTTTTTTT
          1 CTTCTTTTTTTTT

                        *
        525 CTTCTTTTTTTTA
          1 CTTCTTTTTTTTT

                         
        538 C-TCTTTTTTTTT
          1 CTTCTTTTTTTTT

                *   *      
        550 GCTCACTTCTTTTTT
          1 -CT-TCTTTTTTTTT

                         
        565 -TTCTTTTTTTTT
          1 CTTCTTTTTTTTT

        577 TCGAATTTTT


Statistics
Matches: 43,  Mismatches: 6, Indels: 7
        0.77            0.11        0.12

Matches are distributed among these distances:
  12   19  0.44
  13   15  0.35
  15    9  0.21

ACGTcount: A:0.03, C:0.17, G:0.02, T:0.78


Consensus pattern (13 bp):   
CTTCTTTTTTTTT
Done.