Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold2782
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 509
Length: 849
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Found at i:459 original size:194 final size:194
Alignment explanation
Indices: 130--513 Score: 741
Period size: 194 Copynumber: 2.0 Consensus size: 194
120 ATCTCGGAAT
*
130 GCAACAGAAAAAGTGATGTCACGGCCAAAGTGGCGCAAAGTGGCACCCAAATTTTGCGGGATCGT
1 GCAACAGAAAAAGTGACGTCACGGCCAAAGTGGCGCAAAGTGGCACCCAAATTTTGCGGGATCGT
195 ATTCTCAGGACTCCTACGAACATGCCTATACAAATTTTTCTGGCGGATGGTGGCGGATGGGTAGT
66 ATTCTCAGGACTCCTACGAACATGCCTATACAAATTTTTCTGGCGGATGGTGGCGGATGGGTAGT
*
260 TAAAAGTTTACCTAAACTTTTTTTTTTCGCTTTTAGAGATGAGCACATTAGCGCAAACATGAAC
131 TAAAAGTTTACCTAAACTTATTTTTTTCGCTTTTAGAGATGAGCACATTAGCGCAAACATGAAC
324 GCAACAGAAAAAGTGACGTCACGGCCAAAGTGGCGCAAAGTGGCACCCAAATTTTGCGGGATCGT
1 GCAACAGAAAAAGTGACGTCACGGCCAAAGTGGCGCAAAGTGGCACCCAAATTTTGCGGGATCGT
389 ATTCTCAGGACTCCTACGAACATGCCTATACAAATTTTTCTGGCGGATGGTGGCGGATGGGTAGT
66 ATTCTCAGGACTCCTACGAACATGCCTATACAAATTTTTCTGGCGGATGGTGGCGGATGGGTAGT
*
454 TAAAAGTTTACCTAAACTTATTTTTTTCGCTTTTTGAGATGAGCACATTAGCGCAAACAT
131 TAAAAGTTTACCTAAACTTATTTTTTTCGCTTTTAGAGATGAGCACATTAGCGCAAACAT
514 AATCATTGAA
Statistics
Matches: 187, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
194 187 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (194 bp):
GCAACAGAAAAAGTGACGTCACGGCCAAAGTGGCGCAAAGTGGCACCCAAATTTTGCGGGATCGT
ATTCTCAGGACTCCTACGAACATGCCTATACAAATTTTTCTGGCGGATGGTGGCGGATGGGTAGT
TAAAAGTTTACCTAAACTTATTTTTTTCGCTTTTAGAGATGAGCACATTAGCGCAAACATGAAC
Done.