Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold344
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 528373
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.29
Warning! 65855 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:238 original size:132 final size:132
Alignment explanation
Indices: 1--1079 Score: 1556
Period size: 132 Copynumber: 8.2 Consensus size: 132
* *
1 GGAGCAGATCGAAGACAACAAATCTTATCTTTCCAAGATAGCGGGAAGCAGATTTAACTCACCAA
1 GGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAACTCACCAA
*
66 GCATTGTCTCACTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTA
66 GCATTGTCTCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTA
131 GT
131 GT
* * *
133 GGAGCTGATCGAAGATGACAAATCTTATCCTTCCAAGATAGTGGGAAGCAGATTTAACTCACCAA
1 GGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAACTCACCAA
*
198 GAATTGTCTCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTA
66 GCATTGTCTCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTA
263 GT
131 GT
* *
265 GGAGCAGATCGAAGACGGCAAGTCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGC-CACCA
1 GGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA-CTCACCA
* * * * *
329 AGCCTTGTCTCCCTGAGCAGGAGCGGAGTGGGTAGAAAATTGTAGATCTTCTCTCCCTAAGCACT
65 AGCATTGTCTCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGT
*
394 GGT
130 AGT
* * * ** *
397 GGAGCAGATCGAAGAAGACAAATTTTATCTTTCGAACTTAGTGGGAAGCAGATTTAAGTCACCAA
1 GGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAACTCACCAA
* * * *
462 GCATTGTCTCCCTGAGCAGCAGCGGAATGGGTTGAAAATTTTAGTTCTTATCTCCCTAAGCATTA
66 GCATTGTCTCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTA
527 GT
131 GT
* * **
529 GGAGCAGATCGAAGACGACAAATCTTATCTTTCCAACATAGTGGGAAGCAGAATTATGTCACCAA
1 GGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAACTCACCAA
* *
594 GCATTGTCTCCCTAAGCAGCAGCGGAGTGGGTTGAAAATTATAGATCTTATCTCCCTAAGCAGTA
66 GCATTGTCTCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTA
*
659 TT
131 GT
* * * *
661 GAAGCTGATCGAAGACGACAAATCTTATATTTCCAAGATAG-GGGAAAGCAAATTTAAGC-CACC
1 GGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGG-AAGCAGATTTAA-CTCACC
* * * * * *
724 TAGCCTTGTCCCCCTGACCAGCGGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAG
64 AAGCATTGTCTCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAG
789 TAGT
129 TAGT
* * * * * *
793 GGAGCAGACCGAAGACGGCAAATCTTATCTTTCCAACATAGTGTGAAACAGATTTAAGTCACCAA
1 GGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAACTCACCAA
* * **
858 GCATTGTCCCCCTTA-CAGCAATGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTA
66 GCATTGTCTCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTA
922 GT
131 GT
* ** *
924 GGAGCAGATCGAAGACGGCAAATCTGCTCTTTCCAGGATAGTGGGAAGCAGATTTAAGC-CACCA
1 GGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA-CTCACCA
* *
988 AGCCTTGTCTCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCTCTAAGCAGT
65 AGCATTGTCTCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGT
*
1053 TGT
130 AGT
1056 GGAGCAGATCGAAGACGACAAATC
1 GGAGCAGATCGAAGACGACAAATC
1080 CAGCAGCGGA
Statistics
Matches: 841, Mismatches: 98, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
131 118 0.14
132 720 0.86
133 3 0.00
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (132 bp):
GGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAACTCACCAA
GCATTGTCTCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTA
GT
Found at i:1088 original size:75 final size:75
Alignment explanation
Indices: 1005--1154 Score: 264
Period size: 75 Copynumber: 2.0 Consensus size: 75
995 TCTCCCTGAG
* *
1005 CAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCTCTAAGCAGTTGTGGAGCAGATCGAAG
1 CAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
1070 ACGACAAATC
66 ACGACAAATC
*
1080 CAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCTGATCGAAG
1 CAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
*
1145 ACTACAAATC
66 ACGACAAATC
1155 TTATCTTTCT
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
75 71 1.00
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (75 bp):
CAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
ACGACAAATC
Found at i:1235 original size:207 final size:207
Alignment explanation
Indices: 880--1286 Score: 672
Period size: 207 Copynumber: 2.0 Consensus size: 207
870 TTACAGCAAT
*
880 GGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAA
1 GGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAA
* * *
945 ATCTGCTCTTTCCAGGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCA
66 ATCTGATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTAAGCAGCA
* *
1010 GCGGAGTGGGTTGAAAATTGTAGATCTTATCTCTCTAAGCAGTTGTGGAGCAGATCGAAGACGAC
131 GCGGAGTGGGTTGAAAATTGTAGATCTCATCTCTCTAAGCAGTAGTGGAGCAGATCGAAGACGAC
1075 AAATCCAGCAGC
196 AAATCCAGCAGC
* *
1087 GGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCTGATCGAAGACTACAA
1 GGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAA
* *
1152 ATCTTATCTTTCTAAGATAG-GGGAAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTAAGCAGC
66 ATCTGATCTTTCCAAGATAGTGGG-AAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTAAGCAGC
* * * *
1216 AGCGGAGTGGGTTGAAAATTGTAGATCTCATCTCTCTAAGTAGTAGTGGAGTAGATCGAAGATGG
130 AGCGGAGTGGGTTGAAAATTGTAGATCTCATCTCTCTAAGCAGTAGTGGAGCAGATCGAAGACGA
1281 CAAATC
195 CAAATC
1287 TTATCTTTCC
Statistics
Matches: 185, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
206 3 0.02
207 182 0.98
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (207 bp):
GGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACAA
ATCTGATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTAAGCAGCA
GCGGAGTGGGTTGAAAATTGTAGATCTCATCTCTCTAAGCAGTAGTGGAGCAGATCGAAGACGAC
AAATCCAGCAGC
Found at i:1388 original size:102 final size:103
Alignment explanation
Indices: 1192--1397 Score: 301
Period size: 102 Copynumber: 2.0 Consensus size: 103
1182 ATTTAAGCCA
* * * * *
1192 CCAAGCCTTGTCTCCCTAAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTCATCTCTCTAAGT
1 CCAAGCATTGTCCCCCTAAGCAGCAACGGAGTGGGTTGAAAATTGTAGATCTCATCTCCCTAAGC
*
1257 AGTAGTGGAGTAGATCGAAGATGGCAAATCTTATCTTT
66 AGTAGTGGAGTAGATCGAAGATGACAAATCTTATCTTT
* *
1295 CCAAGCATTGTCCCCCTTA-CAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGC
1 CCAAGCATTGTCCCCCTAAGCAGCAACGGAGTGGGTTGAAAATTGTAGATCTCATCTCCCTAAGC
1359 AGTAGTGGAGCT-GATCGAAGACT-ACAAATCTTATCTTT
66 AGTAGTGGAG-TAGATCGAAGA-TGACAAATCTTATCTTT
1397 C
1 C
1398 TAAGATAGGG
Statistics
Matches: 93, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
102 75 0.81
103 18 0.19
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (103 bp):
CCAAGCATTGTCCCCCTAAGCAGCAACGGAGTGGGTTGAAAATTGTAGATCTCATCTCCCTAAGC
AGTAGTGGAGTAGATCGAAGATGACAAATCTTATCTTT
Found at i:1495 original size:234 final size:234
Alignment explanation
Indices: 1080--2001 Score: 1591
Period size: 234 Copynumber: 3.9 Consensus size: 234
1070 ACGACAAATC
*
1080 CAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCTGATCGAAG
1 CAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCTGATCGAAG
1145 ACTACAAATCTTATCTTTCTAAGATAGGGGAAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTA
66 ACTACAAATCTTATCTTTCTAAGATAGGGGAAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTA
1210 AGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTCATCTCTCTAAGTAGTAGTGGAGTAGATCGA
131 AGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTCATCTCTCTAAGTAGTAGTGGAGTAGATCGA
1275 AGATGGCAAATCTTATCTTTCCAAGCATTGTCCCCCTTA
196 AGATGGCAAATCTTATCTTTCCAAGCATTGTCCCCCTTA
1314 CAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCTGATCGAAG
1 CAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCTGATCGAAG
1379 ACTACAAATCTTATCTTTCTAAGATAGGGGAAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTA
66 ACTACAAATCTTATCTTTCTAAGATAGGGGAAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTA
1444 AGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTCATCTCTCTAAGTAGTAGTGGAGTAGATCGA
131 AGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTCATCTCTCTAAGTAGTAGTGGAGTAGATCGA
1509 AGATGGCAAATCTTATCTTTCCAAGCATTGTCCCCCTTA
196 AGATGGCAAATCTTATCTTTCCAAGCATTGTCCCCCTTA
1548 CAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCTGATCGAAG
1 CAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCTGATCGAAG
1613 ACTACAAATCTTATCTTTCTAAGATAGGGGAAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTA
66 ACTACAAATCTTATCTTTCTAAGATAGGGGAAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTA
1678 AGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTCATCTCTCTAAGTAGTAGTGGAGTAGATCGA
131 AGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTCATCTCTCTAAGTAGTAGTGGAGTAGATCGA
1743 AGATGGCAAATCTTATCTTTCCAAGCATTGTCCCCCTTA
196 AGATGGCAAATCTTATCTTTCCAAGCATTGTCCCCCTTA
** *
1782 CAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAAATTGAAG
1 CAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCTGATCGAAG
* ** * * * *
1847 GCGGCATATCTTATCTTTCCAAGCA-AGTGGG-AAGCAGATTTAAGTCACCAAGGCTTGTCTCCT
66 ACTACAAATCTTATCTTTCTAAG-ATAG-GGGAAAGCAGATTTAAGCCACCAAGCCTTGTCTCC-
* * * * ** *
1910 CT-AGCAGCAGCGGAGTGGGTTGAAAATTTTAGATCTTATCTCCCTAAGCAGTTTTGGAGCAGAT
128 CTAAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTCATCTCTCTAAGTAGTAGTGGAGTAGAT
***
1974 CGAAGA-CAAAATATCTTATCTTTCCAAG
193 CGAAGATGGCAA-ATCTTATCTTTCCAAG
2002 ATAACGGGAA
Statistics
Matches: 663, Mismatches: 21, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
233 2 0.00
234 655 0.99
235 6 0.01
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (234 bp):
CAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCTGATCGAAG
ACTACAAATCTTATCTTTCTAAGATAGGGGAAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTA
AGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTCATCTCTCTAAGTAGTAGTGGAGTAGATCGA
AGATGGCAAATCTTATCTTTCCAAGCATTGTCCCCCTTA
Found at i:1622 original size:102 final size:103
Alignment explanation
Indices: 1426--1631 Score: 301
Period size: 102 Copynumber: 2.0 Consensus size: 103
1416 ATTTAAGCCA
* * * * *
1426 CCAAGCCTTGTCTCCCTAAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTCATCTCTCTAAGT
1 CCAAGCATTGTCCCCCTAAGCAGCAACGGAGTGGGTTGAAAATTGTAGATCTCATCTCCCTAAGC
*
1491 AGTAGTGGAGTAGATCGAAGATGGCAAATCTTATCTTT
66 AGTAGTGGAGTAGATCGAAGATGACAAATCTTATCTTT
* *
1529 CCAAGCATTGTCCCCCTTA-CAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGC
1 CCAAGCATTGTCCCCCTAAGCAGCAACGGAGTGGGTTGAAAATTGTAGATCTCATCTCCCTAAGC
1593 AGTAGTGGAGCT-GATCGAAGACT-ACAAATCTTATCTTT
66 AGTAGTGGAG-TAGATCGAAGA-TGACAAATCTTATCTTT
1631 C
1 C
1632 TAAGATAGGG
Statistics
Matches: 93, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
102 75 0.81
103 18 0.19
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (103 bp):
CCAAGCATTGTCCCCCTAAGCAGCAACGGAGTGGGTTGAAAATTGTAGATCTCATCTCCCTAAGC
AGTAGTGGAGTAGATCGAAGATGACAAATCTTATCTTT
Found at i:1858 original size:102 final size:103
Alignment explanation
Indices: 1660--1871 Score: 300
Period size: 102 Copynumber: 2.1 Consensus size: 103
1650 ATTTAAGCCA
* * * * *
1660 CCAAGCCTTGTCTCCCTAAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTCATCTCTCTAAGT
1 CCAAGCATTGTCCCCCTAAGCAGCAACGGAGTGGGTTGAAAATTGTAGATCTCATCTCCCTAAGC
* * *
1725 AGTAGTGGAGTAGATCGAAGATGGCAAATCTTATCTTT
66 AGTAGTGGAGCAAATCGAAGACGGCAAATCTTATCTTT
* *
1763 CCAAGCATTGTCCCCCTTA-CAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGC
1 CCAAGCATTGTCCCCCTAAGCAGCAACGGAGTGGGTTGAAAATTGTAGATCTCATCTCCCTAAGC
* * *
1827 AGTAGTGGAGCAAATTGAAGGCGGCATATCTTATCTTT
66 AGTAGTGGAGCAAATCGAAGACGGCAAATCTTATCTTT
1865 CCAAGCA
1 CCAAGCA
1872 AGTGGGAAGC
Statistics
Matches: 96, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
102 80 0.83
103 16 0.17
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (103 bp):
CCAAGCATTGTCCCCCTAAGCAGCAACGGAGTGGGTTGAAAATTGTAGATCTCATCTCCCTAAGC
AGTAGTGGAGCAAATCGAAGACGGCAAATCTTATCTTT
Found at i:2019 original size:132 final size:132
Alignment explanation
Indices: 1763--3321 Score: 2018
Period size: 132 Copynumber: 11.8 Consensus size: 132
1753 TCTTATCTTT
* *
1763 CCAAGCATTGTC-CCCCTTA-CAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAG
1 CCAAGCATTGTCTCCTC-TAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAG
* * * * *
1826 CAGTAGTGGAGCAAATTGAAGGCGGCATATCTTATCTTTCCAAGCA-AGTGGGAAGCAGATTTAA
65 CAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAG-ATAGTGGGAAGCAGATTTAA
1890 GTCA
129 GTCA
*
1894 CCAAGGC-TTGTCTCCTCTAGCAGCAGCGGAGTGGGTTGAAAATTTTAGATCTTATCTCCCTAAG
1 CCAA-GCATTGTCTCCTCTAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAG
** * **
1958 CAGTTTTGGAGCAGATCGAAGAC-AAAATATCTTATCTTTCCAAGATAACGGGAAGCAGATTTAA
65 CAGTAGTGGAGCAGATCGAAGACGACAA-ATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAA
*
2022 CTCA
129 GTCA
* * *
2026 CTAAGCATTGTCTCACT-GAGCAGCAGCGGAGTGAGTTGAAAATTGTAGATCTTATCTCCCTAAG
1 CCAAGCATTGTCTC-CTCTAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAG
* * * * *
2090 CTGTAGTGGAGCAGATCGAAGGCGACAAATCTTATCTTTTCAAGATCGTGGGAAGCAGATTTAAC
65 CAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
2155 TCA
130 TCA
* * *
2158 CTAAGCATTGTCTCACT-GAGCAGCAGCGGAGTGAGTTGAAAATTGTAGATCTTATCTCCCTAAG
1 CCAAGCATTGTCTC-CTCTAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAG
* * * * *
2222 CTGTAGTGGAGCAGATCGAAGGCGACAAATCTTATCTTTTCAAGATCGTGGGAAGCAGATTTAAC
65 CAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
2287 TCA
130 TCA
* * *
2290 CTAAGCATTGTCTCACT-GAGCAGCAGCGGAGTGAGTTGAAAATTGTAGATCTTATCTCCCTAAG
1 CCAAGCATTGTCTC-CTCTAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAG
* * * * *
2354 CTGTAGTGGAGCAGATCGAAGGCGACAAATCTTATCTTTTCAAGATCGTGGGAAGCAGATTTAAC
65 CAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
2419 TCA
130 TCA
* * *
2422 CTAAGCATTGTCTCACT-GAGCAGCAGCGGAGTGAGTTGAAAATTGTAGATCTTATCTCCCTAAG
1 CCAAGCATTGTCTC-CTCTAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAG
* * * *
2486 CTGTAGTGGAGCAGATCGAAGGCGACAAATCTTATCTTTTCAAGATCGTGGGAAGCAGATTTAAG
65 CAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
*
2551 CCA
130 TCA
* * * * * *
2554 CCAAGCCTTGTCT-CTCTGAGCAGTAGCGTAGTAGGTTGAAAATTTTAAATCTTATCTCCCTAAG
1 CCAAGCATTGTCTCCTCT-AGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAG
* * * * * **
2618 CTGTAGTGGAGCAGATCGAAGACGGCAAATCTTATTTTTCCAAGATAATGGGAAGCATATTTCGG
65 CAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
2683 TCA
130 TCA
* * * * * *
2686 CCAAGCATTGTCTCC-CTGAGCAGCTGCAGAGTGGGTTGAAAATTCTTGATGTTATCTCCCTTAG
1 CCAAGCATTGTCTCCTCT-AGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAG
* * * * *
2750 CAGTAGTAGAACAGATCGAAGACAACAAGTCATATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
65 CAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
2815 TCA
130 TCA
* * *
2818 CCAAGCCTTGTCTCC-CTGAGCAGTAGCAGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAG
1 CCAAGCATTGTCTCCTCT-AGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAG
* * *
2882 CAGTAGTGGAGCTGATCGAAGACGACAAATCTTATCTTTCCATGAAAG-GGGAAAGCAGATTTAA
65 CAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGG-AAGCAGATTTAA
*
2946 GCCA
129 GTCA
*
2950 CCAAGCATTGTCTCACT-GAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAG
1 CCAAGCATTGTCTC-CTCTAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAG
* *
3014 CAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTTTCCAAGATTGTGGGAAGCAGATTTAAG
65 CAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAG
*
3079 CCA
130 TCA
*
3082 CCAAGCCTTGTCTCC-CTAAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAG
1 CCAAGCATTGTCTCCTCT-AGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAG
* * *
3146 CAGTAGTGGAGCTGATCGAAGACTACAAATCTTATCTTTCTAAGATAG-GGGAAAGCAGATTTAA
65 CAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGG-AAGCAGATTTAA
*
3210 GCCA
129 GTCA
* * *
3214 CCAAGCCTTGTCTCC-CTAAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTCATCTCTCTAAG
1 CCAAGCATTGTCTCCTCT-AGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAG
* * * *
3278 TAGTAGTGGAGTAGATCGAAGATGGCAAATCTTATCTTTCCAAG
65 CAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAG
3322 CATTGTCCCC
Statistics
Matches: 1298, Mismatches: 112, Indels: 35
0.90 0.08 0.02
Matches are distributed among these distances:
130 2 0.00
131 22 0.02
132 1264 0.97
133 10 0.01
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.27
Consensus pattern (132 bp):
CCAAGCATTGTCTCCTCTAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGC
AGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGT
CA
Found at i:3046 original size:44 final size:44
Alignment explanation
Indices: 2998--3182 Score: 115
Period size: 44 Copynumber: 4.2 Consensus size: 44
2988 AAAATTGTAG
*
2998 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTGCAA
* * ** * **
3042 ATCTTATCTTTCC-AAG-A-TTGTGGGAAGCAGATTTAAGCCACCAA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCGAAGACTGCAA
** * * * ** * * * * * *
3086 GCCTTGTCTCCCTAAGCAGCAGCGGAGTGGGTTGAAAATTGTAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTGCAA
* *
3130 ATCTTATCTCCCTAAGCAGTAGTGGAGCTGATCGAAGACTACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTGCAA
3174 ATCTTATCT
1 ATCTTATCT
3183 TTCTAAGATA
Statistics
Matches: 96, Mismatches: 39, Indels: 12
0.65 0.27 0.08
Matches are distributed among these distances:
42 3 0.03
43 6 0.06
44 80 0.83
45 6 0.06
46 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (44 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACTGCAA
Found at i:3644 original size:233 final size:234
Alignment explanation
Indices: 3082--3777 Score: 961
Period size: 233 Copynumber: 3.0 Consensus size: 234
3072 ATTTAAGCCA
* * * *
3082 CCAAGCCTTGTCTCCCTAAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGC
1 CCAAGCATTGTCCCCCTTA-CAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGC
* * *
3147 AGTAGTGGAGCTGATCGAAGACTACAAATCTTATCTTTCTAAGATAG-GGGAAAGCAGATTTAAG
65 AGTAGTGGAGCAGATCGAAGACAACAAATCTTATCTTTCCAAGATAGTGGG-AAGCAGATTTAAG
* * * *
3211 CCACCAAGCCTTGTCTCCCTAAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTCATCTCTCTA
129 CCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTA
* * *
3276 AGTAGTAGTGGAGTAGATCGAAGATGGCAAATCTTATCTTT
194 AGTAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTT
*
3317 CCAAGCATTGTCCCCCTTACAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGTA
1 CCAAGCATTGTCCCCCTTACAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCA
* *
3382 GTAATGGAGCAGATC-AAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
66 GTAGTGGAGCAGATCGAAGACAACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
* * *
3446 ACCAAGCCTTGTCTCTCTGAGCAGTAGCGGAGTAGGTTGAAAATTTTAGATCTTATCTCCCTAAG
131 ACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAAG
*
3511 TAGTAATGGAGCAGATC-AAGACGACAAATCTTATCTTT
196 TAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTT
* * *
3549 CCAAGCATTGTCCCCCTTACAGCAACGGAGTGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGCA
1 CCAAGCATTGTCCCCCTTACAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCA
* * ** * * * * *
3614 GTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGTC
66 GTAGTGGAGCAGATCGAAGACAACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
* * *
3679 ACCAAGCAC-TGTCTCCCTGAGCAGCAGCGGAG-AGGGTTGAAAATTGTAGTTCTTATGTTCCTA
131 ACCAAGC-CTTGTCTCCCTGAGCAGCAGCGGAGTA-GGTTGAAAATTGTAGATCTTATCTCCCTA
* * * *
3742 AGCAGTTGTGGAGCAGATCGAAGACAAAAAATCTTA
194 AGTAGTAGTGGAGCAGATCGAAGACGACAAATCTTA
3778 AATTTCGAAG
Statistics
Matches: 410, Mismatches: 46, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
232 94 0.23
233 225 0.55
234 75 0.18
235 16 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.27
Consensus pattern (234 bp):
CCAAGCATTGTCCCCCTTACAGCAACGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGCA
GTAGTGGAGCAGATCGAAGACAACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
ACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAAG
TAGTAGTGGAGCAGATCGAAGACGACAAATCTTATCTTT
Found at i:3660 original size:101 final size:101
Alignment explanation
Indices: 3473--3660 Score: 243
Period size: 101 Copynumber: 1.9 Consensus size: 101
3463 TGAGCAGTAG
* * * *
3473 CGGAGTAGGTTGAAAATTTTAGATCTTATCTCCCTAAGTAGTAATGGAGCAGATCAAGACGACAA
1 CGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCAAGACAAAAA
**
3538 ATCTTATCTTTCCAAGCATTGTCCCCCTTACAGCAA
66 ATCTTAAATTTCCAAGCATTGTCCCCCTTACAGCAA
* * * * **
3574 CGGAGTGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGCAGTTGTGGAGCAGATCGAAGACAAAA
1 CGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATC-AAGACAAAA
*
3639 AATCTTAAATTTCGAAG-ATTGT
65 AATCTTAAATTTCCAAGCATTGT
3661 GGGAAGCAGA
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
101 52 0.71
102 21 0.29
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30
Consensus pattern (101 bp):
CGGAGTAGGTTGAAAATTGTAGATCTTATCTCCCTAAGCAGTAATGGAGCAGATCAAGACAAAAA
ATCTTAAATTTCCAAGCATTGTCCCCCTTACAGCAA
Found at i:3805 original size:132 final size:132
Alignment explanation
Indices: 3549--7659 Score: 8152
Period size: 132 Copynumber: 31.2 Consensus size: 132
3539 TCTTATCTTT
* * * * *
3549 CCAAGCATTGTCCCCCTTA-CAGCAACGGAGTGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
3613 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
3678 CA
131 CA
3680 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
3745 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
3810 CA
131 CA
3812 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
3877 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
3942 CA
131 CA
3944 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
4009 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
4074 CA
131 CA
4076 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
4141 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
4206 CA
131 CA
4208 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
4273 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
4338 CA
131 CA
4340 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
4405 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
4470 CA
131 CA
4472 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
4537 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
4602 CA
131 CA
4604 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
4669 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
4734 CA
131 CA
4736 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
4801 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
4866 CA
131 CA
4868 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
4933 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
4998 CA
131 CA
5000 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
5065 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
5130 CA
131 CA
5132 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
5197 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
5262 CA
131 CA
5264 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
5329 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
5394 CA
131 CA
5396 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
5461 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
5526 CA
131 CA
5528 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
5593 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
5658 CA
131 CA
5660 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
5725 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
5790 CA
131 CA
5792 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
5857 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
5922 CA
131 CA
5924 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
5989 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
6054 CA
131 CA
6056 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
6121 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
6186 CA
131 CA
6188 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
6253 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
6318 CA
131 CA
6320 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
6385 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
6450 CA
131 CA
6452 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
6517 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
6582 CA
131 CA
6584 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
6649 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
6714 CA
131 CA
6716 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
6781 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
6846 CA
131 CA
6848 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
6913 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
6978 CA
131 CA
6980 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
7045 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
7110 CA
131 CA
7112 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
7177 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
7242 CA
131 CA
7244 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
7309 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
7374 CA
131 CA
7376 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
7441 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
7506 CA
131 CA
*
7508 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGTGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
1 CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
*
7573 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTATATTTCGAAGATTGTGGGAAGCAGAATTATGT
66 AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
7638 CA
131 CA
7640 CCAAGCACTGTCTCCCTGAG
1 CCAAGCACTGTCTCCCTGAG
7660 NNNNNNNNNN
Statistics
Matches: 3972, Mismatches: 7, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
131 16 0.00
132 3956 1.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.26
Consensus pattern (132 bp):
CCAAGCACTGTCTCCCTGAGCAGCAGCGGAGAGGGTTGAAAATTGTAGTTCTTATGTTCCTAAGC
AGTTGTGGAGCAGATCGAAGACAAAAAATCTTAAATTTCGAAGATTGTGGGAAGCAGAATTATGT
CA
Found at i:23540 original size:132 final size:132
Alignment explanation
Indices: 23301--23709 Score: 685
Period size: 132 Copynumber: 3.1 Consensus size: 132
23291 NNNNNNNNNN
*
23301 GCCTTGTCTCCCTAAGCAGCAGCGGAGTGGGTTGAAAATTG-ATGATCTTATCTCCCTAAGCAGT
1 GCCTTGTCTCCCTAAGCAGCAGCGGAGTGGGTTGAAAATTGTA-GATCTTATCTCCCTAAGTAGT
* * * * **
23365 AGTGCAGCAGATCGAAGACGGCAAATCTTATCTTTCCATGATAGTGGGAAGCATATTTAAATCAC
65 AGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
23430 CAA
130 CAA
*
23433 CCCTTGTCTCCCTAAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGTAGTA
1 GCCTTGTCTCCCTAAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGTAGTA
23498 GTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACC
66 GTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACC
23563 AA
131 AA
* * *
23565 GCCTTGTCTCTCTGAGCAGTAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGTAGTA
1 GCCTTGTCTCCCTAAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGTAGTA
* *
23630 GTGGAGTAGATCGAAGATGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACC
66 GTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACC
23695 AA
131 AA
23697 GCCTTGTCTCCCT
1 GCCTTGTCTCCCT
23710 GAAGTTGCAG
Statistics
Matches: 261, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
132 260 1.00
133 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (132 bp):
GCCTTGTCTCCCTAAGCAGCAGCGGAGTGGGTTGAAAATTGTAGATCTTATCTCCCTAAGTAGTA
GTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACC
AA
Found at i:25207 original size:24 final size:23
Alignment explanation
Indices: 25144--25208 Score: 62
Period size: 24 Copynumber: 2.7 Consensus size: 23
25134 ACGGCTTTAT
25144 TTTATTTTTATTTATATGTAATTA
1 TTTA-TTTTATTTATATGTAATTA
*
25168 TTT-TTTATAATCTATATGT-ATATA
1 TTTATTT-T-ATTTATATGTAAT-TA
25192 TTTATTTTATTATATAT
1 TTTATTTTATT-TATAT
25209 ACGTATGTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
22 3 0.09
23 5 0.15
24 23 0.68
25 3 0.09
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.65
Consensus pattern (23 bp):
TTTATTTTATTTATATGTAATTA
Found at i:37397 original size:21 final size:22
Alignment explanation
Indices: 37358--37401 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
37348 ACCACAAACA
37358 AAAATGCAAACCAAACATGACC
1 AAAATGCAAACCAAACATGACC
* *
37380 AAAA-GCAAATCAATCATGACC
1 AAAATGCAAACCAAACATGACC
37401 A
1 A
37402 TTATCACTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.55, C:0.25, G:0.09, T:0.11
Consensus pattern (22 bp):
AAAATGCAAACCAAACATGACC
Found at i:43127 original size:80 final size:79
Alignment explanation
Indices: 42994--43154 Score: 304
Period size: 80 Copynumber: 2.0 Consensus size: 79
42984 TCAAAAAAAT
42994 AGTCAGTCAACACAAGCCATGGATAACTTTGACTATATGTGTTCCCATGAACACTTTGATTATAA
1 AGTCAGTCAACACAAGCCATGGATAACTTTGACTATATGTGTTCCCATGAACACTTTGATTATAA
43059 CAAAGATATTTATGA
66 -AAAGATATTTATGA
*
43074 AGTCAGTCAGCACAAGCCATGGATAACTTTGACTATATGTGTTCCCATGAACACTTTGATTATAA
1 AGTCAGTCAACACAAGCCATGGATAACTTTGACTATATGTGTTCCCATGAACACTTTGATTATAA
43139 AAAGATATTTATGA
66 AAAGATATTTATGA
43153 AG
1 AG
43155 GAGTCTATGA
Statistics
Matches: 80, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
79 16 0.20
80 64 0.80
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (79 bp):
AGTCAGTCAACACAAGCCATGGATAACTTTGACTATATGTGTTCCCATGAACACTTTGATTATAA
AAAGATATTTATGA
Found at i:48238 original size:22 final size:22
Alignment explanation
Indices: 48207--48262 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
48197 ATTGAAAATT
* *
48207 ATGTCACAACATGGGGGGTTTG
1 ATGTCGCAACATGGGGGGTTCG
48229 ATGTCGCAACATGGGGGGTTCG
1 ATGTCGCAACATGGGGGGTTCG
*
48251 ATCTCGCAACAT
1 ATGTCGCAACAT
48263 AAAGAGCAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.23, C:0.20, G:0.32, T:0.25
Consensus pattern (22 bp):
ATGTCGCAACATGGGGGGTTCG
Found at i:49947 original size:21 final size:22
Alignment explanation
Indices: 49908--49951 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
49898 ACCACAAACA
49908 AAAATGCAAACCAAACATGACC
1 AAAATGCAAACCAAACATGACC
* *
49930 AAAA-GCAAATCAATCATGACC
1 AAAATGCAAACCAAACATGACC
49951 A
1 A
49952 TTTTGACTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.55, C:0.25, G:0.09, T:0.11
Consensus pattern (22 bp):
AAAATGCAAACCAAACATGACC
Found at i:50091 original size:57 final size:57
Alignment explanation
Indices: 50022--50139 Score: 236
Period size: 57 Copynumber: 2.1 Consensus size: 57
50012 CAAAACAAAG
50022 TTTAAAGACAAGTACACAAAACATTACCATACAAAATATGATCAACATGAGACATAA
1 TTTAAAGACAAGTACACAAAACATTACCATACAAAATATGATCAACATGAGACATAA
50079 TTTAAAGACAAGTACACAAAACATTACCATACAAAATATGATCAACATGAGACATAA
1 TTTAAAGACAAGTACACAAAACATTACCATACAAAATATGATCAACATGAGACATAA
50136 TTTA
1 TTTA
50140 TCACTTCACA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.52, C:0.17, G:0.08, T:0.23
Consensus pattern (57 bp):
TTTAAAGACAAGTACACAAAACATTACCATACAAAATATGATCAACATGAGACATAA
Found at i:59688 original size:25 final size:25
Alignment explanation
Indices: 59660--59713 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
59650 TGTAGTGGCA
59660 AGGTGGCGACACAGGTGTGGCAAGG
1 AGGTGGCGACACAGGTGTGGCAAGG
* * *
59685 AGGTGGTGTCACAGGTGTGGTAAGG
1 AGGTGGCGACACAGGTGTGGCAAGG
59710 AGGT
1 AGGT
59714 CAGAGGTTCA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.22, C:0.11, G:0.48, T:0.19
Consensus pattern (25 bp):
AGGTGGCGACACAGGTGTGGCAAGG
Found at i:61740 original size:34 final size:34
Alignment explanation
Indices: 61638--61751 Score: 88
Period size: 36 Copynumber: 3.2 Consensus size: 34
61628 ATACAGTTAT
* * *
61638 ATATATAATTATTCAAAT-ACATATGCCAAAAGCAT
1 ATATATACTTA-TC-AATCACATATGCCAAATGCAC
* * * *
61673 ATATTTATACTTATCAATTACATGTGTCGAATGCAC
1 ATA--TATACTTATCAATCACATATGCCAAATGCAC
61709 ATATATACTTAT-AATCCACATATGCCAAATGCATAC
1 ATATATACTTATCAAT-CACATATGCCAAATGC--AC
61745 ATATATA
1 ATATATA
61752 TATATATCCA
Statistics
Matches: 63, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
33 3 0.05
34 21 0.33
35 6 0.10
36 26 0.41
37 7 0.11
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.34
Consensus pattern (34 bp):
ATATATACTTATCAATCACATATGCCAAATGCAC
Found at i:61972 original size:41 final size:40
Alignment explanation
Indices: 61922--62128 Score: 252
Period size: 41 Copynumber: 5.0 Consensus size: 40
61912 TTAATTTAAA
*
61922 CAGATTCACTGGCACTTAGCCTGTTAGGCTTAAAGCCTGATT
1 CAGA-TCACTGGCACTTAGCCTGCTAGGCTTAAA-CCTGATT
* *
61964 CAGATCACTAGCACTTAGCCTGCTAGGCTTATAACCTAATT
1 CAGATCACTGGCACTTAGCCTGCTAGGCTTA-AACCTGATT
* * *
62005 TAGATCACTGGCACTTATCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACTGGCACTTAGCCTGCTAGGCTTA-AACCTGATT
* *
62046 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCTGGTT
1 CAGATCACTGGCACTTAGCCTGCTAGGCTTA-AACCTGATT
* * *
62087 TAGATCACCGGCACTTAGCCTGCTAGGTTTTAAAACCTGATT
1 CAGATCACTGGCACTTAGCCTGCTAGG-CTT-AAACCTGATT
62129 TGGTACACCG
Statistics
Matches: 146, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
41 129 0.88
42 16 0.11
43 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (40 bp):
CAGATCACTGGCACTTAGCCTGCTAGGCTTAAACCTGATT
Found at i:62049 original size:82 final size:82
Alignment explanation
Indices: 61927--62128 Score: 305
Period size: 82 Copynumber: 2.5 Consensus size: 82
61917 TTAAACAGAT
* *
61927 TCACTGGCACTTAGCCTGTTAGGCTTAAAGCCTGATTCAGATCACTAGCACTTAGCCTGCTAGGC
1 TCACTGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGATCACCAGCACTTAGCCTGCTAGGC
61992 TTATAACCTAATTTAGA
66 TTATAACCTAATTTAGA
* * *
62009 TCACTGGCACTTATCCTGCTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGGC
1 TCACTGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGATCACCAGCACTTAGCCTGCTAGGC
**
62074 TTATAACCTGGTTTAGA
66 TTATAACCTAATTTAGA
* * *
62091 TCACCGGCACTTAGCCTGCTAGGTTTTAAAACCTGATT
1 TCACTGGCACTTAGCCTGCTAGG-CTTAAAGCCTGATT
62129 TGGTACACCG
Statistics
Matches: 107, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
82 96 0.90
83 11 0.10
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (82 bp):
TCACTGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGATCACCAGCACTTAGCCTGCTAGGC
TTATAACCTAATTTAGA
Found at i:62916 original size:155 final size:156
Alignment explanation
Indices: 62736--63038 Score: 366
Period size: 155 Copynumber: 1.9 Consensus size: 156
62726 TATATTATAC
* * *
62736 ATATATATATGTAACATCCATACTTTTAA-TAAAATCCAAGAATTTATACTCAT-ATATACATAC
1 ATATATAAATATAACATACATACTTTTAACT-AAATCCAAGAATTTAT--TCATAATATACATAC
* * * ** * *
62799 CTATTCGAACCTCT-TGTAAACATGTATAACATTCA-AC-ATTAAATAAATTCAA-AACTTATTC
63 ATATCCGAACCT-TATATAAACAAATATAACATACATACTATTAAATAAATTCAAGAACTTATAC
62860 ATGTATATACATATATATATCCGAACTTTAT
127 ATGTATATACATATAT-TATCCGAACTTTAT
* *
62891 ATATATAAATATAACATACATACTTTTAACTAAATTCAAGAATTTATTCATGAATATACATATAT
1 ATATATAAATATAACATACATACTTTTAACTAAATCCAAGAATTTATTCAT-AATATACATACAT
* * * *
62956 ATCCGAACCTTATATATATAAATATAACATACATACTTTTAACTAAATTCAAGAACTTATACATG
65 ATCCGAACCTTATATAAACAAATATAACATACATACTATTAAATAAATTCAAGAACTTATACATG
63021 TATATACATATATTATCC
130 TATATACATATATTATCC
63039 ACTATTAGTT
Statistics
Matches: 125, Mismatches: 16, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
153 4 0.03
154 1 0.01
155 75 0.60
156 3 0.02
157 18 0.14
158 24 0.19
ACGTcount: A:0.44, C:0.16, G:0.04, T:0.37
Consensus pattern (156 bp):
ATATATAAATATAACATACATACTTTTAACTAAATCCAAGAATTTATTCATAATATACATACATA
TCCGAACCTTATATAAACAAATATAACATACATACTATTAAATAAATTCAAGAACTTATACATGT
ATATACATATATTATCCGAACTTTAT
Found at i:62948 original size:80 final size:80
Alignment explanation
Indices: 62837--63038 Score: 331
Period size: 78 Copynumber: 2.6 Consensus size: 80
62827 ACATTCAACA
* *
62837 TTAAATAAATTCAA-AACTTATTCATGTATATACATATATATATCCGAACTTTATATATATAAAT
1 TTAACTAAATTCAAGAACTTATTCATGTATATACATATATATATCCGAACCTTATATATATAAAT
62901 ATAACATACATACTT
66 ATAACATACATACTT
* *
62916 TTAACTAAATTCAAGAATTTATTCATGAATATAC--ATATATATCCGAACCTTATATATATAAAT
1 TTAACTAAATTCAAGAACTTATTCATGTATATACATATATATATCCGAACCTTATATATATAAAT
62979 ATAACATACATACTT
66 ATAACATACATACTT
*
62994 TTAACTAAATTCAAGAACTTATACATGTATATACATATAT-TATCC
1 TTAACTAAATTCAAGAACTTATTCATGTATATACATATATATATCC
63039 ACTATTAGTT
Statistics
Matches: 113, Mismatches: 7, Indels: 6
0.90 0.06 0.05
Matches are distributed among these distances:
78 74 0.65
79 18 0.16
80 21 0.19
ACGTcount: A:0.45, C:0.14, G:0.03, T:0.38
Consensus pattern (80 bp):
TTAACTAAATTCAAGAACTTATTCATGTATATACATATATATATCCGAACCTTATATATATAAAT
ATAACATACATACTT
Found at i:65733 original size:27 final size:27
Alignment explanation
Indices: 65683--65736 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
65673 AAAAATTTTT
*
65683 ATTACCGAAATACCCCTGATGGGTAAA
1 ATTACCGAAATACCCCTCATGGGTAAA
*
65710 ATTATCGAAATACCCC-CATAGGGTAAA
1 ATTACCGAAATACCCCTCAT-GGGTAAA
65737 CTGACTGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 2 0.08
27 22 0.92
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (27 bp):
ATTACCGAAATACCCCTCATGGGTAAA
Found at i:68437 original size:41 final size:41
Alignment explanation
Indices: 68380--68634 Score: 271
Period size: 41 Copynumber: 6.3 Consensus size: 41
68370 AAGAATATTG
* * * *
68380 CTGAATTACATATACGTGCCCCTGTTTGTACTTCCGTACCA
1 CTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * *
68421 CTGAATTGCACATACGTGCCCC-ATTTGTACTTCGGCACCT
1 CTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * * * *
68461 TTGAATTGCACATGCGTGTCCCTTTTTGTACTTCAGTACCC
1 CTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * * * * *
68502 CTAAATTGAATATATGTTCCCCTGTTTGTACTTTGGTACCC
1 CTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * *
68543 CTGAATTGCACATACGTGCCCCTGTTAGTACTTTGATACCC
1 CTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
* * *
68584 CTGAATTGCACATATGTGCCCCTATTTGTACTTCGATACCC
1 CTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
*
68625 ATGAA-TGCAC
1 CTGAATTGCAC
68635 TTTTGTACCA
Statistics
Matches: 177, Mismatches: 36, Indels: 3
0.82 0.17 0.01
Matches are distributed among these distances:
40 38 0.21
41 139 0.79
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.35
Consensus pattern (41 bp):
CTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCC
Found at i:68545 original size:20 final size:20
Alignment explanation
Indices: 68520--68586 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
68510 AATATATGTT
68520 CCCCTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTTGGTA
* * * ** *
68540 CCCCTGAATTGCACATACGTG
1 CCCCTG-TTTGTACTTTGGTA
* *
68561 CCCCTGTTAGTACTTTGATA
1 CCCCTGTTTGTACTTTGGTA
68581 CCCCTG
1 CCCCTG
68587 AATTGCACAT
Statistics
Matches: 32, Mismatches: 14, Indels: 2
0.67 0.29 0.04
Matches are distributed among these distances:
20 18 0.56
21 14 0.44
ACGTcount: A:0.16, C:0.31, G:0.18, T:0.34
Consensus pattern (20 bp):
CCCCTGTTTGTACTTTGGTA
Found at i:77685 original size:21 final size:22
Alignment explanation
Indices: 77656--77706 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
77646 TCTCTCTCGC
*
77656 TTTCCTTTTCGCCTTTTTCA-T
1 TTTCATTTTCGCCTTTTTCACT
**
77677 TTTCATTTTCTTCTTTTTCACT
1 TTTCATTTTCGCCTTTTTCACT
77699 TTT-ATTTT
1 TTTCATTTT
77707 TCTCTTCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 22 0.85
22 4 0.15
ACGTcount: A:0.08, C:0.22, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTCATTTTCGCCTTTTTCACT
Found at i:82003 original size:21 final size:21
Alignment explanation
Indices: 81958--81997 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
81948 AATTTTGTAG
*
81958 TTAAAGTGAAATTAAAACAAA
1 TTAAAGTGAAAGTAAAACAAA
81979 TTAAAGTGAAAGTAAAACA
1 TTAAAGTGAAAGTAAAACA
81998 CTTTAATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.60, C:0.05, G:0.12, T:0.23
Consensus pattern (21 bp):
TTAAAGTGAAAGTAAAACAAA
Found at i:86375 original size:19 final size:19
Alignment explanation
Indices: 86351--86389 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
86341 AGGTAAATTG
86351 AAAATGATTA-TTTGAGATT
1 AAAATG-TTAGTTTGAGATT
86370 AAAATGTTATGTTTGAGATT
1 AAAATGTTA-GTTTGAGATT
86390 GATTATCGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 3 0.17
19 6 0.33
20 9 0.50
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (19 bp):
AAAATGTTAGTTTGAGATT
Found at i:88968 original size:39 final size:38
Alignment explanation
Indices: 88925--89081 Score: 104
Period size: 39 Copynumber: 4.0 Consensus size: 38
88915 TTCGGTTATA
*
88925 CCGATGAGCGCTAGGTGCAAACTAATTACTTCAGACGTT
1 CCGATGAGCGCTAGGCGCAAA-TAATTACTTCAGACGTT
* * **
88964 CCGATGAGGCACTAGGTGTCAAATGGTTAC-TCAACGACGTGT
1 CCGATGA-GCGCTAGGCG-CAAATAATTACTTC-A-GACGT-T
* * * * *** *
89006 -CGATGAGTGTTGGGCGC-AATATTTACTTCAGTTATA
1 CCGATGAGCGCTAGGCGCAAATAATTACTTCAGACGTT
*
89042 CCGATGAGCGCTAGGCGCAAACTAATTACTTCGGACGTT
1 CCGATGAGCGCTAGGCGCAAA-TAATTACTTCAGACGTT
89081 C
1 C
89082 TAATGAGGCA
Statistics
Matches: 86, Mismatches: 23, Indels: 18
0.68 0.18 0.14
Matches are distributed among these distances:
37 16 0.19
38 10 0.12
39 24 0.28
40 20 0.23
41 15 0.17
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (38 bp):
CCGATGAGCGCTAGGCGCAAATAATTACTTCAGACGTT
Found at i:88987 original size:114 final size:115
Alignment explanation
Indices: 88777--89155 Score: 449
Period size: 114 Copynumber: 3.3 Consensus size: 115
88767 GGACGTTCCG
* * * *
88777 ATGAGTACTAGGCACAACATTTACTTCGGTTATATCGATGAGCGCTAGACGCAAACTAATTACTT
1 ATGAGTGCTAGGCACAATATTTACTTCGGTTATACCGATGAGCGCTAGGCGCAAACTAATTACTT
* *
88842 CAGACATTCCGATGAGGCACTAGCTGCCAAATGGTTACTTCGACTATGTC
66 CAGACGTTCCGATGAGGCACTAGGTGCCAAATGGTTACTTCGACTATGTC
* *
88892 -TCGA-TGCTAGGCACAATTTTTACTTCGGTTATACCGATGAGCGCTAGGTGCAAACTAATTACT
1 AT-GAGTGCTAGGCACAATATTTACTTCGGTTATACCGATGAGCGCTAGGCGCAAACTAATTACT
* * *
88955 TCAGACGTTCCGATGAGGCACTAGGTGTCAAATGGTTACTCAACGAC-GTGTC
65 TCAGACGTTCCGATGAGGCACTAGGTGCCAAATGGTTACT--TCGACTATGTC
* * * *
89007 GATGAGTGTTGGGCGCAATATTTACTTCAGTTATACCGATGAGCGCTAGGCGCAAACTAATTACT
1 -ATGAGTGCTAGGCACAATATTTACTTCGGTTATACCGATGAGCGCTAGGCGCAAACTAATTACT
* ** * *
89072 TCGGACGTTCTAATGAGGCATTGGGTGCCAAATGGTTACTTCGACTACATGTC
65 TCAGACGTTCCGATGAGGCACTAGGTGCCAAATGGTTACTTCGACT--ATGTC
* * * * *
89125 GATGAGTGTTGGGTACATTTTTTACTTCGGT
1 -ATGAGTGCTAGGCACAATATTTACTTCGGT
89156 CATATTGATG
Statistics
Matches: 225, Mismatches: 30, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
114 91 0.40
115 10 0.04
116 6 0.03
117 88 0.39
118 30 0.13
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.30
Consensus pattern (115 bp):
ATGAGTGCTAGGCACAATATTTACTTCGGTTATACCGATGAGCGCTAGGCGCAAACTAATTACTT
CAGACGTTCCGATGAGGCACTAGGTGCCAAATGGTTACTTCGACTATGTC
Found at i:89079 original size:117 final size:116
Alignment explanation
Indices: 88787--89155 Score: 458
Period size: 117 Copynumber: 3.2 Consensus size: 116
88777 ATGAGTACTA
* * * *
88787 GGCACAACATTTACTTCGGTTATATCGATGAGCGCTAGACGCAAACTAATTACTTCAGACATTCC
1 GGCACAATATTTACTTCGGTTATACCGATGAGCGCTAGGCGCAAACTAATTACTTCAGACGTTCC
* * * *
88852 GATGAGGCACTAGCTGCCAAATGGTTACT-TCGACTATGTC--TCGA-TGCTA
66 GATGAGGCACTAGGTGCCAAATGGTTACTCACGAC-ATGTCGAT-GAGTGTTG
* *
88901 GGCACAATTTTTACTTCGGTTATACCGATGAGCGCTAGGTGCAAACTAATTACTTCAGACGTTCC
1 GGCACAATATTTACTTCGGTTATACCGATGAGCGCTAGGCGCAAACTAATTACTTCAGACGTTCC
* *
88966 GATGAGGCACTAGGTGTCAAATGGTTACTCAACGACGTGTCGATGAGTGTTG
66 GATGAGGCACTAGGTGCCAAATGGTTACTC-ACGACATGTCGATGAGTGTTG
* * * *
89018 GGCGCAATATTTACTTCAGTTATACCGATGAGCGCTAGGCGCAAACTAATTACTTCGGACGTTCT
1 GGCACAATATTTACTTCGGTTATACCGATGAGCGCTAGGCGCAAACTAATTACTTCAGACGTTCC
* * * *
89083 AATGAGGCATTGGGTGCCAAATGGTTACTTCGACTACATGTCGATGAGTGTTG
66 GATGAGGCACTAGGTGCCAAATGGTTAC-TC-ACGACATGTCGATGAGTGTTG
* * *
89136 GGTACATTTTTTACTTCGGT
1 GGCACAATATTTACTTCGGT
89156 CATATTGATG
Statistics
Matches: 219, Mismatches: 30, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
114 86 0.39
115 4 0.02
116 6 0.03
117 87 0.40
118 36 0.16
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.30
Consensus pattern (116 bp):
GGCACAATATTTACTTCGGTTATACCGATGAGCGCTAGGCGCAAACTAATTACTTCAGACGTTCC
GATGAGGCACTAGGTGCCAAATGGTTACTCACGACATGTCGATGAGTGTTG
Found at i:94803 original size:20 final size:21
Alignment explanation
Indices: 94780--94831 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 21
94770 GTTTTACTTT
*
94780 TATGAAAATTGTATTGCT-TG
1 TATGAAAATTGCATTGCTATG
* *
94800 TATGGAAATAGCATTGCTCATG
1 TATGAAAATTGCATTGCT-ATG
*
94822 TATCAAAATT
1 TATGAAAATT
94832 TGAATAATAT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
20 15 0.62
22 9 0.38
ACGTcount: A:0.35, C:0.10, G:0.17, T:0.38
Consensus pattern (21 bp):
TATGAAAATTGCATTGCTATG
Found at i:100900 original size:50 final size:50
Alignment explanation
Indices: 100741--101031 Score: 302
Period size: 50 Copynumber: 5.9 Consensus size: 50
100731 GATAATAACA
* * * * ***
100741 TGCCAAAGCCATGTCCCAGATATGGTCTTACATGGGA--TGTTTTCTATAC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCT-CGG
* * * ** * *
100790 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATC-G
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGG
* * * * **
100839 TGCCCATGCCATGTCCAAAACATGGTCTTACGGGGGACCT-TTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTT-ATCTCGG
* * *
100889 TGCCAAAGCCATGTCCCAGACATGGTCTTATATGAGACCTCTTATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGG
* * *
100939 TGTCAACGCCATGCCCCAGACATGGTCTTACTTGGGACCTCTTATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGG
100989 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTT
101032 TACACAAATG
Statistics
Matches: 201, Mismatches: 36, Indels: 9
0.82 0.15 0.04
Matches are distributed among these distances:
48 1 0.00
49 70 0.35
50 124 0.62
51 6 0.03
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.29
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGG
Found at i:114432 original size:27 final size:27
Alignment explanation
Indices: 114402--114454 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
114392 TAGAACTTAG
*
114402 AATTTTTAAGAATTCTACTCTAGCTCC
1 AATTCTTAAGAATTCTACTCTAGCTCC
114429 AATTCTTAAGAATTCTACTCTAGCTC
1 AATTCTTAAGAATTCTACTCTAGCTC
114455 TTACTCCTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.08, T:0.40
Consensus pattern (27 bp):
AATTCTTAAGAATTCTACTCTAGCTCC
Found at i:114762 original size:27 final size:27
Alignment explanation
Indices: 114732--115025 Score: 332
Period size: 27 Copynumber: 10.9 Consensus size: 27
114722 AAAACCCCTC
*
114732 AATACCCCTATAGGGTAAAATGATCGA
1 AATACCCCTATAGGGTAAAATGACCGA
*
114759 AATACCCTTATAGGGTAAAATGACCGA
1 AATACCCCTATAGGGTAAAATGACCGA
*
114786 AATACCCC-AGTAGGGTAAAATAACCGA
1 AATACCCCTA-TAGGGTAAAATGACCGA
*
114813 AATA-CCCTCGTAGGGTAAAATGACCGA
1 AATACCCCT-ATAGGGTAAAATGACCGA
*
114840 AATACACCC-ATAGGGTAAAATGATCGA
1 AATAC-CCCTATAGGGTAAAATGACCGA
*
114867 AATACCCCCATAGGGTAAAATGACCGA
1 AATACCCCTATAGGGTAAAATGACCGA
* *
114894 AATA-CCCTCGTAGGGTAAATTGACCGA
1 AATACCCCT-ATAGGGTAAAATGACCGA
* ** *
114921 AATACCTCC-GTAGACTAAAATGACTGA
1 AATACC-CCTATAGGGTAAAATGACCGA
* *
114948 AATA-CCCTCATAGGGTAAAATGATCAA
1 AATACCCCT-ATAGGGTAAAATGACCGA
*
114975 AATACCCCTATAGGGTAAAATGACTGA
1 AATACCCCTATAGGGTAAAATGACCGA
*
115002 AACACTCCC-ATAGGGTAAAATGAC
1 AATAC-CCCTATAGGGTAAAATGAC
115026 TGTTATACCT
Statistics
Matches: 228, Mismatches: 26, Indels: 26
0.81 0.09 0.09
Matches are distributed among these distances:
25 2 0.01
26 11 0.05
27 202 0.89
28 8 0.04
29 5 0.02
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.20
Consensus pattern (27 bp):
AATACCCCTATAGGGTAAAATGACCGA
Found at i:115386 original size:33 final size:33
Alignment explanation
Indices: 115343--115405 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
115333 GGGTTGCATT
* *
115343 ATTGCACTGTTACTGTATTGGGCTAAGGCCCAC
1 ATTGCACTGTTACTGAATAGGGCTAAGGCCCAC
* *
115376 ATTGTACTGTTACTGAATAGGGCTCAGGCC
1 ATTGCACTGTTACTGAATAGGGCTAAGGCC
115406 TAGACTGTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.30
Consensus pattern (33 bp):
ATTGCACTGTTACTGAATAGGGCTAAGGCCCAC
Found at i:117036 original size:18 final size:18
Alignment explanation
Indices: 117001--117052 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
116991 AAGTCGAGAG
* *
117001 AAAATGAACAAGAGAAAA
1 AAAATGAAAAAGAAAAAA
*
117019 AGAATGAAAAAGAAAAAA
1 AAAATGAAAAAGAAAAAA
* *
117037 AAAAGGAAAATGAAAA
1 AAAATGAAAAAGAAAA
117053 TGAAAAAAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.75, C:0.02, G:0.17, T:0.06
Consensus pattern (18 bp):
AAAATGAAAAAGAAAAAA
Found at i:121043 original size:37 final size:37
Alignment explanation
Indices: 120997--121070 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
120987 AGTTATCGTC
* *
120997 TCCATAGGGATTATATTTGTGCTAAGTCACTTAATTT
1 TCCACAGGGATTATAGTTGTGCTAAGTCACTTAATTT
*
121034 TCCACAGGGATTGTAGTTGTGCTAAGTCACTTAATTT
1 TCCACAGGGATTATAGTTGTGCTAAGTCACTTAATTT
121071 GTAAAATTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.41
Consensus pattern (37 bp):
TCCACAGGGATTATAGTTGTGCTAAGTCACTTAATTT
Found at i:133654 original size:454 final size:454
Alignment explanation
Indices: 132842--133747 Score: 1704
Period size: 454 Copynumber: 2.0 Consensus size: 454
132832 TACTTTAATA
132842 AACTCAATTTATTATCAACATGCTTAATAACATTCGGAAAAGCTTTCCATGGCAAGTAGATCTTT
1 AACTCAATTTATTATCAACATGCTTAATAACATTCGGAAAAGCTTTCCATGGCAAGTAGATCTTT
132907 CATGAGTTTGGAAACACATTAGGTCCTTTCGGAATCCTTTACTTAGTAAATACGCATTTTACTGA
66 CATGAGTTTGGAAACACATTAGGTCCTTTCGGAATCCTTTACTTAGTAAATACGCATTTTACTGA
132972 TCCTTATTTACTAAGGGTTTCTTAACATTCGTGTGAGGTAATAGGGACGTGTTAGGTTTGAAACA
131 TCCTTATTTACTAAGGGTTTCTTAACATTCGTGTGAGGTAATAGGGACGTGTTAGGTTTGAAACA
133037 ATTTAATCACACAAATCTAAAAACTATGCAGATAACAGAGCTTGATTAGAGTTGTTATGCAACCT
196 ATTTAATCACACAAATCTAAAAACTATGCAGATAACAGAGCTTGATTAGAGTTGTTATGCAACCT
133102 ACAATTTAATCATGTTAGGATCTAAATTGAGCATGCACATTTCAATTATGTGTCCATTAGCCGTC
261 ACAATTTAATCATGTTAGGATCTAAATTGAGCATGCACATTTCAATTATGTGTCCATTAGCCGTC
*
133167 ATCTGGTCAAGATCACTCAGCTAATTCAGGTGCATTTCAATCACGTATGAACGAAATACAAACTT
326 ATCTGGTCAAGATCACTCAGCCAATTCAGGTGCATTTCAATCACGTATGAACGAAATACAAACTT
* *
133232 GATTTTAATTGAAAACATGATCAATTAAGGCACAAACATTATAAGCATGAATCAAATAAATATT
391 GATTTTAATTGAAAACATGAACAATTAAGGCACAAACATTATAAGCATGAATAAAATAAATATT
133296 AACTCAATTTATTATCAACATGCTTAATAACATTCGGAAAAGCTTTCCATGGCAAGTAGATCTTT
1 AACTCAATTTATTATCAACATGCTTAATAACATTCGGAAAAGCTTTCCATGGCAAGTAGATCTTT
133361 CATGAGTTTGGAAACACATTAGGTCCTTTCGGAATCCTTTACTTAGTAAATACGCATTTTACTGA
66 CATGAGTTTGGAAACACATTAGGTCCTTTCGGAATCCTTTACTTAGTAAATACGCATTTTACTGA
133426 TCCTTATTTACTAAGGGTTTCTTAACATTCGTGTGAGGTAATAGGGACGTGTTAGGTTTGAAACA
131 TCCTTATTTACTAAGGGTTTCTTAACATTCGTGTGAGGTAATAGGGACGTGTTAGGTTTGAAACA
133491 ATTTAATCACACAAATCTAAAAACTATGCAGATAACAGAGCTTGATTAGAGTTGTTATGCAACCT
196 ATTTAATCACACAAATCTAAAAACTATGCAGATAACAGAGCTTGATTAGAGTTGTTATGCAACCT
133556 ACAATTTAATCATGTTAGGATCTAAATTGAGCATGCACATTTCAATTATGTGTCCATTAGCCGTC
261 ACAATTTAATCATGTTAGGATCTAAATTGAGCATGCACATTTCAATTATGTGTCCATTAGCCGTC
* * * * * * *
133621 GTCTGGTTAGGATCGCTCAGCCAATTTAGGTGCATTTCAATCACGTATGAATGAAATACAGACTT
326 ATCTGGTCAAGATCACTCAGCCAATTCAGGTGCATTTCAATCACGTATGAACGAAATACAAACTT
* *
133686 GATTTTAATTGAAAACATGAACGATTGAGGCACAAACATTATAAGCATGAATAAAATAAATA
391 GATTTTAATTGAAAACATGAACAATTAAGGCACAAACATTATAAGCATGAATAAAATAAATA
133748 ATATTTAATT
Statistics
Matches: 440, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
454 440 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (454 bp):
AACTCAATTTATTATCAACATGCTTAATAACATTCGGAAAAGCTTTCCATGGCAAGTAGATCTTT
CATGAGTTTGGAAACACATTAGGTCCTTTCGGAATCCTTTACTTAGTAAATACGCATTTTACTGA
TCCTTATTTACTAAGGGTTTCTTAACATTCGTGTGAGGTAATAGGGACGTGTTAGGTTTGAAACA
ATTTAATCACACAAATCTAAAAACTATGCAGATAACAGAGCTTGATTAGAGTTGTTATGCAACCT
ACAATTTAATCATGTTAGGATCTAAATTGAGCATGCACATTTCAATTATGTGTCCATTAGCCGTC
ATCTGGTCAAGATCACTCAGCCAATTCAGGTGCATTTCAATCACGTATGAACGAAATACAAACTT
GATTTTAATTGAAAACATGAACAATTAAGGCACAAACATTATAAGCATGAATAAAATAAATATT
Found at i:134807 original size:116 final size:116
Alignment explanation
Indices: 134603--134820 Score: 418
Period size: 116 Copynumber: 1.9 Consensus size: 116
134593 AAAAGAATAG
*
134603 TATATTCAAATTAATATAAAATAAGTCATTTATTGCATGAAAACTATATAATAAAGCATAAAATC
1 TATATTCAAATTAATATAAAATAAGCCATTTATTGCATGAAAACTATATAATAAAGCATAAAATC
*
134668 ACTTTTTAATAATTTCTATGTCCTAATTTCATATTTTTCTTGAAAATATAA
66 ACATTTTAATAATTTCTATGTCCTAATTTCATATTTTTCTTGAAAATATAA
134719 TATATTCAAATTAATATAAAATAAGCCATTTATTGCATGAAAACTATATAATAAAGCATAAAATC
1 TATATTCAAATTAATATAAAATAAGCCATTTATTGCATGAAAACTATATAATAAAGCATAAAATC
134784 ACATTTTAATAATTTCTATGTCCTAATTTCATATTTT
66 ACATTTTAATAATTTCTATGTCCTAATTTCATATTTT
134821 CACATATTTC
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
116 100 1.00
ACGTcount: A:0.43, C:0.11, G:0.05, T:0.41
Consensus pattern (116 bp):
TATATTCAAATTAATATAAAATAAGCCATTTATTGCATGAAAACTATATAATAAAGCATAAAATC
ACATTTTAATAATTTCTATGTCCTAATTTCATATTTTTCTTGAAAATATAA
Found at i:135077 original size:24 final size:23
Alignment explanation
Indices: 135049--135105 Score: 62
Period size: 24 Copynumber: 2.4 Consensus size: 23
135039 AAAGTCGAGA
135049 GAAAATGAACAAGAGAAA-AAGAAT
1 GAAAATGAACAAGA-AAAGAA-AAT
* *
135073 GAAAAAGAACATGAAAAGGAAAAT
1 GAAAATGAACAAGAAAA-GAAAAT
135097 GAAAATGAA
1 GAAAATGAA
135106 AAAAAATTGG
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
23 3 0.11
24 23 0.82
25 2 0.07
ACGTcount: A:0.67, C:0.04, G:0.21, T:0.09
Consensus pattern (23 bp):
GAAAATGAACAAGAAAAGAAAAT
Found at i:135094 original size:18 final size:18
Alignment explanation
Indices: 135073--135107 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
135063 GAAAAAGAAT
*
135073 GAAAAAGAACATGAAAAG
1 GAAAAAGAAAATGAAAAG
*
135091 GAAAATGAAAATGAAAA
1 GAAAAAGAAAATGAAAA
135108 AAAATTGGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.69, C:0.03, G:0.20, T:0.09
Consensus pattern (18 bp):
GAAAAAGAAAATGAAAAG
Found at i:137594 original size:30 final size:30
Alignment explanation
Indices: 137554--137619 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
137544 ACTATAGGGG
*
137554 TCACACGGCCATGTGGCCAGGCCGTGTGAC
1 TCACACGGCCATGTGGCCAGGCCATGTGAC
* *
137584 TCACATGGCCATGTGGCTAGGCCATGTGAC
1 TCACACGGCCATGTGGCCAGGCCATGTGAC
137614 TCACAC
1 TCACAC
137620 AAGTAAGACA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.20
Consensus pattern (30 bp):
TCACACGGCCATGTGGCCAGGCCATGTGAC
Found at i:138969 original size:35 final size:34
Alignment explanation
Indices: 138930--138998 Score: 86
Period size: 35 Copynumber: 2.0 Consensus size: 34
138920 TCTGTAGTGA
*
138930 GCCCAACTCTAGTT-GGTTAAACCAACGATGATTGC
1 GCCCAACGCTAGTTGGGTT-AACCAACGAT-ATTGC
* *
138965 GCCCAGCGCTAGTTGGGTTAGCCAACGATATTGC
1 GCCCAACGCTAGTTGGGTTAACCAACGATATTGC
138999 AAAGATTTAC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
34 5 0.17
35 21 0.70
36 4 0.13
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (34 bp):
GCCCAACGCTAGTTGGGTTAACCAACGATATTGC
Found at i:147805 original size:93 final size:93
Alignment explanation
Indices: 147643--147818 Score: 316
Period size: 93 Copynumber: 1.9 Consensus size: 93
147633 CAGGTACCAT
*
147643 TGAATATAAAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGAGTTGCTAAGTGCTGATTCCCCGAC
1 TGAATATAAAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGAGTTGCTAAGTGCTGATTCCCCGAA
147708 TCATTGGTGGTTGCTAAGCCACCGTATC
66 TCATTGGTGGTTGCTAAGCCACCGTATC
* * *
147736 TGAATATAAAGGGGGTTGCTAAGTGCTGATTTCCCCAAGGGGTTGCTAAGTGCTGATTCCTCGAA
1 TGAATATAAAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGAGTTGCTAAGTGCTGATTCCCCGAA
147801 TCATTGGTGGTTGCTAAG
66 TCATTGGTGGTTGCTAAG
147819 TGCTGAATCC
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 79 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
TGAATATAAAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGAGTTGCTAAGTGCTGATTCCCCGAA
TCATTGGTGGTTGCTAAGCCACCGTATC
Found at i:152210 original size:21 final size:21
Alignment explanation
Indices: 152186--152226 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
152176 CCTTCAAGGA
152186 TATGCAATCCTAGATATGATG
1 TATGCAATCCTAGATATGATG
* *
152207 TATGCAATCTTGGATATGAT
1 TATGCAATCCTAGATATGAT
152227 ATACAATCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.37
Consensus pattern (21 bp):
TATGCAATCCTAGATATGATG
Found at i:157021 original size:25 final size:25
Alignment explanation
Indices: 156993--157061 Score: 69
Period size: 25 Copynumber: 3.0 Consensus size: 25
156983 CATTTATTTT
*
156993 TGAGCCAA-TATTTTTTCATTCTTTG
1 TGAG-CAATTATTCTTTCATTCTTTG
*
157018 TGAGTAATTATTCTTTCATTCTTT-
1 TGAGCAATTATTCTTTCATTCTTTG
157042 TG-G--ATT-TTCTTTCATTCTTT
1 TGAGCAATTATTCTTTCATTCTTT
157062 CATTCTTTCA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
20 14 0.34
21 3 0.07
23 1 0.02
24 4 0.10
25 19 0.46
ACGTcount: A:0.17, C:0.14, G:0.10, T:0.58
Consensus pattern (25 bp):
TGAGCAATTATTCTTTCATTCTTTG
Found at i:159422 original size:88 final size:87
Alignment explanation
Indices: 159374--159672 Score: 413
Period size: 88 Copynumber: 3.4 Consensus size: 87
159364 AGATACCAGC
*
159374 CTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGGCACCAGCCTTGCCTCCCTGGGTTGTAGT
1 CTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGACACCAGCCTTGCCTCCCT-GGTTGTAG-
*
159439 GGAA-CAGGTTGAAGATAGCAGAT
64 CGAAGCAGGTTGAAGATAGCAGAT
* * * *
159462 CTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTAGGTTGTAGT
1 CTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGACACCAGCCTTGCCTCCCT-GGTTGTAGC
*
159527 GGAGCAGGTTGAAGATAGCAGAT
65 GAAGCAGGTTGAAGATAGCAGAT
* *
159550 CTTGGCTTCCTGTACCGACAGTGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGT
1 CTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGACACCAGCCTTGCCTCCCT-GGTTGTAGC
** *
159615 GGGGCAGGTTAAAGAT-GCAGAT
65 GAAGCAGGTTGAAGATAGCAGAT
* * *
159637 CTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAG
1 CTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAG
159673 TAGCAGATCT
Statistics
Matches: 192, Mismatches: 18, Indels: 3
0.90 0.08 0.01
Matches are distributed among these distances:
87 40 0.21
88 152 0.79
ACGTcount: A:0.24, C:0.25, G:0.28, T:0.23
Consensus pattern (87 bp):
CTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGTTGTAGCG
AAGCAGGTTGAAGATAGCAGAT
Found at i:159435 original size:132 final size:132
Alignment explanation
Indices: 159242--159517 Score: 410
Period size: 132 Copynumber: 2.1 Consensus size: 132
159232 AATAACATAT
* * *
159242 CTTGCCTTCCTATACTGACGGCGAAACAGATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGT
1 CTTGCCTTCCTATACCGACAGCGAAACAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGT
* * *
159307 -GAAGCAGGTTGAAGATAGTAGATCTTGCCTTCCTGTATTGACAGCGAAGAAGATCAAAGATACC
66 GGAA-CAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGAAGATCAAAGATACC
159371 AGC
130 AGC
* * * *
159374 CTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGGCACCAGCCTTGCCTCCCTGGGTTGTAGT
1 CTTGCCTTCCTATACCGACAGCGAAACAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGT
* * *
159439 GGAACAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGATACCA
66 GGAACAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGAAGATCAAAGATACCA
159504 GC
131 GC
*
159506 CTTGCCTCCCTA
1 CTTGCCTTCCTA
159518 GGTTGTAGTG
Statistics
Matches: 128, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
132 125 0.98
133 3 0.02
ACGTcount: A:0.26, C:0.26, G:0.25, T:0.24
Consensus pattern (132 bp):
CTTGCCTTCCTATACCGACAGCGAAACAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGT
GGAACAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGAAGATCAAAGATACCA
GC
Found at i:159512 original size:176 final size:174
Alignment explanation
Indices: 159330--159735 Score: 539
Period size: 176 Copynumber: 2.3 Consensus size: 174
159320 GATAGTAGAT
* * *
159330 CTTGCCTTCCTGTATTGACAGCGAAGAAGATCAAAGATACCAGCCTTGCCTTCCTGTACCGACAG
1 CTTGCCTTCCTG-ATTGATAGCGAAGAAGATCGAAGATACCAGACTTGCCTTCCTGTACCGACAG
* *
159395 TGAAGCAGATCGAAGGCACCAGCCTTGCCTCCCTGGGTTGTAGTGGAACAGGTTGAAGATAGCAG
65 TGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGTGGAACAGGTTAAAGAT-GCAG
*
159460 ATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGATACCAG-C
129 ATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAG-TACCAGAC
* * * * * * * * *
159506 CTTGCCTCCCTAGGTTG-TAGTGGAGCAGGTTGAAGATAGCAGATCTTGGCTTCCTGTACCGACA
1 CTTGCCTTCCT-GATTGATAGCGAAGAAGATCGAAGATACCAGA-CTTGCCTTCCTGTACCGACA
**
159570 GTGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGTGGGGCAGGTTAAAGATGCAG
64 GTGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGTGGAACAGGTTAAAGATGCAG
* *
159635 ATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGTAGCAGAT
129 ATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGTACCAGAC
* * *
159681 CTTGCCTTCCTACATCGATAGCGAAGAAGATCGAAGATACCA-ACTTGCCTCCCTG
1 CTTGCCTTCCT-GATTGATAGCGAAGAAGATCGAAGATACCAGACTTGCCTTCCTG
159736 GGTTGTAGTG
Statistics
Matches: 195, Mismatches: 31, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
174 15 0.08
175 72 0.37
176 107 0.55
177 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.26, T:0.23
Consensus pattern (174 bp):
CTTGCCTTCCTGATTGATAGCGAAGAAGATCGAAGATACCAGACTTGCCTTCCTGTACCGACAGT
GAAGCAGATCGAAGACACCAGCCTTGCCTCCCTGGGTTGTAGTGGAACAGGTTAAAGATGCAGAT
CTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGTACCAGAC
Found at i:159712 original size:131 final size:132
Alignment explanation
Indices: 159537--159806 Score: 391
Period size: 131 Copynumber: 2.1 Consensus size: 132
159527 GGAGCAGGTT
* ** * * *
159537 GAAGATAGCAGATCTTGGCTTCCTGTACCGACAGTGAAGCAGATCGAAGACACCAGCCTTGCCTC
1 GAAGATAGCAGATCTTGCCTTCCTACACCGACAGCGAAGAAGATCGAAGACACCA-ACTTGCCTC
* *
159602 CCTGGGTTGTAGTGGGGCAGGTTAAAGAT-GCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAG
65 CCTGGGTTGTAGTGGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGCATCGACAACGAAGCAG
159666 ATC
130 ATC
* * *
159669 GAAG-TAGCAGATCTTGCCTTCCTACATCGATAGCGAAGAAGATCGAAGATACCAACTTGCCTCC
1 GAAGATAGCAGATCTTGCCTTCCTACACCGACAGCGAAGAAGATCGAAGACACCAACTTGCCTCC
* * *
159733 CTGGGTTGTAGTGGAGCAGGTTGAAGATAGTAGATCTTGCCTTCCTGCATCGATAACGAAGCAGA
66 CTGGGTTGTAGTGGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGCATCGACAACGAAGCAGA
159798 TC
131 TC
159800 GAAGATA
1 GAAGATA
159807 CCAGCCTTGC
Statistics
Matches: 122, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
130 35 0.29
131 81 0.66
132 6 0.05
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (132 bp):
GAAGATAGCAGATCTTGCCTTCCTACACCGACAGCGAAGAAGATCGAAGACACCAACTTGCCTCC
CTGGGTTGTAGTGGAGCAGGTTAAAGATAGCAGATCTTGCCTTCCTGCATCGACAACGAAGCAGA
TC
Found at i:159987 original size:88 final size:88
Alignment explanation
Indices: 159833--160711 Score: 1359
Period size: 88 Copynumber: 10.0 Consensus size: 88
159823 GGGTTGTAGT
* * *
159833 GGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTACATCGATAGCGAAGAAGATCG
1 GGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCG
*
159898 AAGATACCAACCTTGCCTCCCTG
66 AAGATACCAGCCTTGCCTCCCTG
** * * *
159921 GGTCCTAGTGGAGCAGGTTGAAGGTAGCAGATCTTTCCTTTCTGCATCGACAGCGAAGCAGATCG
1 GGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCG
159986 AAGATACCAGCCTTGCCTCCCTG
66 AAGATACCAGCCTTGCCTCCCTG
* * * *
160009 GGTTGTAATGGAGCAGGTTAAAGATAGCATATCTTGTCTTCCTGCATCGACAGCGAAG-AGGATC
1 GGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCA-GATC
160073 GAAGATACCAGCCTTGCCTCCCTG
65 GAAGATACCAGCCTTGCCTCCCTG
* * *
160097 GGTTGTAGTGGAGGAGGTTGAAGATAGCAGATCTTGTCTTCCTGTATCGACAGCGAAGCAGATCG
1 GGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCG
160162 AAGATACCAGCCTTGCCTCCCTG
66 AAGATACCAGCCTTGCCTCCCTG
* *
160185 GGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCAACAGTGAAGCAGATCG
1 GGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCG
160250 AAGATACCAGCCTTGCCTCCCTG
66 AAGATACCAGCCTTGCCTCCCTG
* * * *
160273 GGTGGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGAAAGCGAAGCAGATCG
1 GGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCG
*
160338 AAAATACCAGCCTTGCCTCCCTG
66 AAGATACCAGCCTTGCCTCCCTG
* * * *
160361 GGTCGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATCG
1 GGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCG
*
160426 AAGGTACCAGCCTTGCCTCCCTG
66 AAGATACCAGCCTTGCCTCCCTG
*
160449 GGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGTAGATCG
1 GGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCG
160514 AAGATACCAGCCTTGCCTCCCTG
66 AAGATACCAGCCTTGCCTCCCTG
* * * * *
160537 GGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGGCTTCCTGTACCGACAGTGAAGTAGATCG
1 GGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCG
160602 AAGATACCAGCCTTGCCTCCCTG
66 AAGATACCAGCCTTGCCTCCCTG
* * *
160625 GGTTGTAGTGGAGCAGGTTAAAGAT-GCAGATCTTGCCTTCCTGTA-CTGACAGTGAAGCAGATC
1 GGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATC-GACAGCGAAGCAGATC
* * *
160688 AAAGATACTAGCCTTGCCTACCTG
65 GAAGATACCAGCCTTGCCTCCCTG
160712 TATTTGCGTG
Statistics
Matches: 732, Mismatches: 56, Indels: 7
0.92 0.07 0.01
Matches are distributed among these distances:
86 1 0.00
87 56 0.08
88 674 0.92
89 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (88 bp):
GGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCG
AAGATACCAGCCTTGCCTCCCTG
Found at i:160117 original size:176 final size:176
Alignment explanation
Indices: 159669--160711 Score: 1520
Period size: 176 Copynumber: 5.9 Consensus size: 176
159659 GAAGCAGATC
* * * *
159669 GAAG-TAGCAGATCTTGCCTTCCTACATCGATAGCGAAGAAGATCGAAGATACCA-ACTTGCCTC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTC
* * *
159732 CCTGGGTTGTAGTGGAGCAGGTTGAAGATAGTAGATCTTGCCTTCCTGCATCGATAACGAAGCAG
66 CCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAG
*
159797 ATCGAAGATACCAGCCTTGCCTCCTTGGGTTGTAGTGGTTGTAGTGGAGCAGGTT
131 ATCGAAGATACCAGCCTTGCCTCC-------CT-G-GGTTGTAGTGGAGCAGGTT
* * * *
159852 GAAGATAGCAGATCTTGCCTTCCTACATCGATAGCGAAGAAGATCGAAGATACCAACCTTGCCTC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTC
** * * *
159917 CCTGGGTCCTAGTGGAGCAGGTTGAAGGTAGCAGATCTTTCCTTTCTGCATCGACAGCGAAGCAG
66 CCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAG
*
159982 ATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAATGGAGCAGGTT
131 ATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTT
* * *
160028 AAAGATAGCATATCTTGTCTTCCTGCATCGACAGCGAAG-AGGATCGAAGATACCAGCCTTGCCT
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCA-GATCGAAGATACCAGCCTTGCCT
* * *
160092 CCCTGGGTTGTAGTGGAGGAGGTTGAAGATAGCAGATCTTGTCTTCCTGTATCGACAGCGAAGCA
65 CCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCA
160157 GATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTT
130 GATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTT
* *
160204 GAAGATAGCAGATCTTGCCTTCCTGCATCAACAGTGAAGCAGATCGAAGATACCAGCCTTGCCTC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTC
* * * *
160269 CCTGGGTGGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGAAAGCGAAGCAG
66 CCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAG
* *
160334 ATCGAAAATACCAGCCTTGCCTCCCTGGGTCGTAGTGGAGCAGGTT
131 ATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTT
* * * *
160380 GAAGATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGGTACCAGCCTTGCCTC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTC
*
160445 CCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGTAG
66 CCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAG
160510 ATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTT
131 ATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTT
* * * * *
160556 GAAGATAGCAGATCTTGGCTTCCTGTACCGACAGTGAAGTAGATCGAAGATACCAGCCTTGCCTC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTC
* * *
160621 CCTGGGTTGTAGTGGAGCAGGTTAAAGAT-GCAGATCTTGCCTTCCTGTA-CTGACAGTGAAGCA
66 CCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATC-GACAGCGAAGCA
* * *
160684 GATCAAAGATACTAGCCTTGCCTACCTG
130 GATCGAAGATACCAGCCTTGCCTCCCTG
160712 TATTTGCGTG
Statistics
Matches: 796, Mismatches: 59, Indels: 18
0.91 0.07 0.02
Matches are distributed among these distances:
174 1 0.00
175 55 0.07
176 594 0.75
177 2 0.00
178 1 0.00
183 4 0.01
184 50 0.06
185 89 0.11
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (176 bp):
GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTC
CCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAG
ATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTT
Found at i:160204 original size:264 final size:264
Alignment explanation
Indices: 159669--160711 Score: 1538
Period size: 264 Copynumber: 3.9 Consensus size: 264
159659 GAAGCAGATC
* * * *
159669 GAAG-TAGCAGATCTTGCCTTCCTACATCGATAGCGAAGAAGATCGAAGATACCA-ACTTGCCTC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTC
* * * *
159732 CCTGGGTTGTAGTGGAGCAGGTTGAAGATAGTAGATCTTGCCTTCCTGCATCGATAACGAAGCAG
66 CCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAG
*
159797 ATCGAAGATACCAGCCTTGCCTCCTTGGGTTGTAGTGGTTGTAGTGGAGCAGGTTGAAGATAGCA
131 ATCGAAGATACCAGCCTTGCCTCC-------CT-G-GGTTGTAGTGGAGCAGGTTGAAGATAGCA
** * * * **
159862 GATCTTGCCTTCCTACATCGATAGCGAAGAAGATCGAAGATACCAACCTTGCCTCCCTGGGTCCT
187 GATCTTGCCTTCCTGTATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTGGGTTGT
159927 AGTGGAGCAGGTT
252 AGTGGAGCAGGTT
* * *
159940 GAAGGTAGCAGATCTTTCCTTTCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTC
* * * * *
160005 CCTGGGTTGTAATGGAGCAGGTTAAAGATAGCATATCTTGTCTTCCTGCATCGACAGCGAAG-AG
66 CCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCA-
* *
160069 GATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGGAGGTTGAAGATAGCAGATCTTGT
130 GATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGC
160134 CTTCCTGTATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGC
195 CTTCCTGTATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGC
160199 AGGTT
260 AGGTT
* *
160204 GAAGATAGCAGATCTTGCCTTCCTGCATCAACAGTGAAGCAGATCGAAGATACCAGCCTTGCCTC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTC
* * *
160269 CCTGGGTGGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGAAAGCGAAGCAG
66 CCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAG
* *
160334 ATCGAAAATACCAGCCTTGCCTCCCTGGGTCGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCC
131 ATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCC
* * *
160399 TTCCTGTACCGACAGTGAAGCAGATCGAAGGTACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCA
196 TTCCTGTATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCA
160464 GGTT
261 GGTT
*
160468 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGTAGATCGAAGATACCAGCCTTGCCTC
1 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTC
* * * *
160533 CCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGGCTTCCTGTACCGACAGTGAAGTAG
66 CCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAG
*
160598 ATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTAAAGAT-GCAGATCTTGCC
131 ATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCC
* * * *
160662 TTCCTGTA-CTGACAGTGAAGCAGATCAAAGATACTAGCCTTGCCTACCTG
196 TTCCTGTATC-GACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTG
160712 TATTTGCGTG
Statistics
Matches: 709, Mismatches: 58, Indels: 18
0.90 0.07 0.02
Matches are distributed among these distances:
262 1 0.00
263 56 0.08
264 511 0.72
265 2 0.00
266 1 0.00
271 4 0.01
272 46 0.06
273 88 0.12
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (264 bp):
GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTC
CCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAG
ATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCC
TTCCTGTATCGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCA
GGTT
Found at i:160767 original size:87 final size:87
Alignment explanation
Indices: 160644--160943 Score: 304
Period size: 87 Copynumber: 3.4 Consensus size: 87
160634 GGAGCAGGTT
* * * * * *
160644 AAAGAT-GCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATCAAAGATA-CTAGCCTTGCCT
1 AAAGATAGCAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCAAAGATAGCTAGTCTTG-CT
* * *
160707 ACCTGTATTTGCGTGAAGTAGATC
64 TCCTGTATTGGTGTGAAGTAGATC
* * * *
160731 AAAGATAGTAGATCTTGTCGTCATGTATTGGCGTGAAGTAGATCGAAGATAGC-AGATCGTG-TT
1 AAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCTAG-TCTTGCTT
** * *
160794 CCCATACTGGTGACGAAGTAGATC
65 CCTGTATTGGTG-TGAAGTAGATC
* * * *
160818 GAAGAAAGCAAATCTTGTCTTCATGTATTAGCGTGAAGTAGATCAAAGATAGCATA-TCTTGTCT
1 AAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGC-TAGTCTTG-CT
* *
160882 TCATGTATTGGTGTGAAGTAAATC
64 TCCTGTATTGGTGTGAAGTAGATC
160906 AAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAG
1 AAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAG
160944 NNNNNNNNNN
Statistics
Matches: 170, Mismatches: 35, Indels: 15
0.77 0.16 0.07
Matches are distributed among these distances:
86 8 0.05
87 85 0.50
88 66 0.39
89 11 0.06
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (87 bp):
AAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCTAGTCTTGCTTC
CTGTATTGGTGTGAAGTAGATC
Found at i:160877 original size:44 final size:44
Alignment explanation
Indices: 160644--160943 Score: 297
Period size: 44 Copynumber: 6.9 Consensus size: 44
160634 GGAGCAGGTT
* * * * *
160644 AAAGAT-GCAGATCTTGCCTTCCTGTACTGACAGTGAAGCAGATC
1 AAAGATAGCAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATC
* * * * *
160688 AAAGATA-CTAG-CCTTGCCTACCTGTATTTGCGTGAAGTAGATC
1 AAAGATAGC-AGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
* *
160731 AAAGATAGTAGATCTTGTCGTCATGTATTGGCGTGAAGTAGATC
1 AAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
* * * * * *
160775 GAAGATAGCAGATCGTGT-TCCCA--TACTGGTGACGAAGTAGATC
1 AAAGATAGCAGATCTTGTCT-TCATGTATTGGCG-TGAAGTAGATC
* * * *
160818 GAAGAAAGCAAATCTTGTCTTCATGTATTAGCGTGAAGTAGATC
1 AAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
* * *
160862 AAAGATAGCATATCTTGTCTTCATGTATTGGTGTGAAGTAAATC
1 AAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
160906 AAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAG
1 AAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAG
160944 NNNNNNNNNN
Statistics
Matches: 210, Mismatches: 37, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
42 6 0.03
43 47 0.22
44 150 0.71
45 7 0.03
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (44 bp):
AAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
Found at i:161096 original size:47 final size:44
Alignment explanation
Indices: 160982--161152 Score: 256
Period size: 44 Copynumber: 3.9 Consensus size: 44
160972 NNNNNNTGGC
* *
160982 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATTTGTTGGCGT
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGT
* *
161026 GAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTATTGGCGT
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGT
*
161070 GGCAAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGC--
1 -G--AAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGT
161115 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
161153 CAGCATGAAA
Statistics
Matches: 116, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
42 36 0.31
44 41 0.35
45 1 0.01
47 38 0.33
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.30
Consensus pattern (44 bp):
GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGT
Found at i:161138 original size:42 final size:43
Alignment explanation
Indices: 160978--161152 Score: 246
Period size: 42 Copynumber: 4.0 Consensus size: 43
160968 NNNNNNNNNN
* *
160978 TGGC-GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATTTGT
1 TGGCGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
* *
161020 TGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCATGTAT
1 TGGCG-GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
*
161064 TGGCGTGGCAAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTAT
1 TGGC--GG--AAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
161111 TGGC-GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
1 TGGCGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
161153 CAGCATGAAA
Statistics
Matches: 119, Mismatches: 8, Indels: 12
0.86 0.06 0.09
Matches are distributed among these distances:
42 40 0.34
44 39 0.33
45 1 0.01
46 1 0.01
47 38 0.32
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (43 bp):
TGGCGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
Found at i:161256 original size:133 final size:133
Alignment explanation
Indices: 160978--161239 Score: 314
Period size: 133 Copynumber: 2.0 Consensus size: 133
160968 NNNNNNNNNN
* * ** * *
160978 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATTTGTTGGCGTGAAGTAGATCAAAGATA
1 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATCAGCATGAAATAGATCAAAGATA
** * ** * *
161043 GCAGATCTTGTCTTCATGTATTGGCGTGGCAAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATG
66 GCAGATCTTGTCTTCACATACTGGCGTGGCAAAGTAGATCGAAGAAACAAGATCTTATCTCCATG
*
161108 TAT
131 AAT
* *
161111 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATCAGCATGAAATAGATGAAAGGTA
1 TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATCAGCATGAAATAGATCAAAGATA
* * * * *
161176 GCAGATTTTGTCTTCCCATACT-G-GTGGCGAAGTAGATCGAAGATACAAG-TCTTATCTCCCTG
66 GCAGATCTTGTCTTCACATACTGGCGTGGCAAAGTAGATCGAAGAAACAAGATCTTATCTCCATG
161238 AA
131 AA
161240 GTTGCAGTGG
Statistics
Matches: 108, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
130 11 0.10
131 22 0.20
132 1 0.01
133 74 0.69
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (133 bp):
TGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATCAGCATGAAATAGATCAAAGATA
GCAGATCTTGTCTTCACATACTGGCGTGGCAAAGTAGATCGAAGAAACAAGATCTTATCTCCATG
AAT
Found at i:161489 original size:19 final size:19
Alignment explanation
Indices: 161465--161562 Score: 106
Period size: 19 Copynumber: 4.8 Consensus size: 19
161455 AATCTTCGAG
161465 GATATGTAATCTTAGATAT
1 GATATGTAATCTTAGATAT
*
161484 GATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATAT
* *
161503 GATATATGCAATCTTAAATAT
1 G--ATATGTAATCTTAGATAT
161524 GATATGTAATCTTAGAAGATAT
1 GATATGTAATCTT---AGATAT
*
161546 GATTTTGTAATCTTAGA
1 GA-TATGTAATCTTAGA
161563 GATTTAATTT
Statistics
Matches: 68, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
19 30 0.44
20 3 0.04
21 18 0.26
22 7 0.10
23 10 0.15
ACGTcount: A:0.38, C:0.07, G:0.15, T:0.40
Consensus pattern (19 bp):
GATATGTAATCTTAGATAT
Found at i:161511 original size:21 final size:21
Alignment explanation
Indices: 161466--161528 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
161456 ATCTTCGAGG
*
161466 ATATGTAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
161485 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
*
161506 ATATGCAATCTTAAATATGAT
1 ATATGCAATCTTAGATATGAT
161527 AT
1 AT
161529 GTAATCTTAG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
19 18 0.45
21 22 0.55
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.40
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:161572 original size:22 final size:23
Alignment explanation
Indices: 161528--161572 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
161518 AAATATGATA
*
161528 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
161551 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
161573 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:166997 original size:28 final size:28
Alignment explanation
Indices: 166950--167151 Score: 257
Period size: 28 Copynumber: 7.2 Consensus size: 28
166940 CAGTGATAGT
* *
166950 ACAGTATGGGTCTTAGCCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
* * *
166978 ACTGTGTAGGCCTTAACCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
*
167006 ACAGTGTGGGCATTAGCCCAATACA-TA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
*
167033 ATCAGTGTGGGCCTTAGCCCAATATAG-A
1 A-CAGTGTGGGCCTTAGCCCAATACAGTA
*
167061 ATCAGTGTGGGCCTTATCCCAATACAGTA
1 A-CAGTGTGGGCCTTAGCCCAATACAGTA
167090 ACAGTGTGGGCCTTAGCCCAATACAG-A
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
* * *
167117 ATCAATATTGGCCTTAGCCCAATACAGTA
1 A-CAGTGTGGGCCTTAGCCCAATACAGTA
167146 ACAGTG
1 ACAGTG
167152 CAGTGCAATA
Statistics
Matches: 150, Mismatches: 19, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
27 5 0.03
28 141 0.94
29 4 0.03
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (28 bp):
ACAGTGTGGGCCTTAGCCCAATACAGTA
Found at i:167075 original size:84 final size:84
Alignment explanation
Indices: 166951--167151 Score: 296
Period size: 84 Copynumber: 2.4 Consensus size: 84
166941 AGTGATAGTA
* *
166951 CAGTATGGGTCTTAGCCCAATACAGTAACTGTGTAGGCCTTAACCCAATACAGTAACAGTGTGGG
1 CAGTATGGGCCTTAGCCCAATACAGTAACAGTGTAGGCCTTAACCCAATACAGTAACAGTGTGGG
*
167016 CATTAGCCCAATACATAAT
66 CATTAGCCCAATACAGAAT
* * * *
167035 CAGTGTGGGCCTTAGCCCAATATAG-AATCAGTGTGGGCCTTATCCCAATACAGTAACAGTGTGG
1 CAGTATGGGCCTTAGCCCAATACAGTAA-CAGTGTAGGCCTTAACCCAATACAGTAACAGTGTGG
*
167099 GCCTTAGCCCAATACAGAAT
65 GCATTAGCCCAATACAGAAT
* *
167119 CAATATTGGCCTTAGCCCAATACAGTAACAGTG
1 CAGTATGGGCCTTAGCCCAATACAGTAACAGTG
167152 CAGTGCAATA
Statistics
Matches: 103, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
83 2 0.02
84 99 0.96
85 2 0.02
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (84 bp):
CAGTATGGGCCTTAGCCCAATACAGTAACAGTGTAGGCCTTAACCCAATACAGTAACAGTGTGGG
CATTAGCCCAATACAGAAT
Found at i:167600 original size:27 final size:26
Alignment explanation
Indices: 167570--168207 Score: 603
Period size: 27 Copynumber: 23.8 Consensus size: 26
167560 TATAACAGTT
167570 ATTTTACCCTATCGGGGTATTTCGATC
1 ATTTTACCCTAT-GGGGTATTTCGATC
*
167597 ATTTTACCCTATAGGGTTATTTCGATC
1 ATTTTACCCTAT-GGGGTATTTCGATC
* *
167624 ATTTTAACCTATGGGGATATTTCG-TA
1 ATTTTACCCTATGGGG-TATTTCGATC
* * * *
167650 ATTTTTCACTATGGGGGTATTTTGGTC
1 ATTTTACCCTAT-GGGGTATTTCGATC
* *
167677 ATTTTACCTTATGGGGGTATTTCGATT
1 ATTTTACCCTAT-GGGGTATTTCGATC
*
167704 ATTTTACCCTATGGGGGTATTTCGATT
1 ATTTTACCCTAT-GGGGTATTTCGATC
* *
167731 ATATTACCCTATGGAGGCATTTC-AGTC
1 ATTTTACCCTATGG-GGTATTTCGA-TC
* * *
167758 ATTTTACCCTATAGGGTATTTCGGTT
1 ATTTTACCCTATGGGGTATTTCGATC
* *
167784 ATTTTACCTTACAGGGGTATTTCGATC
1 ATTTTACCCTA-TGGGGTATTTCGATC
* * *
167811 ATTTTACCCTATGAAGGTATTTCGGTT
1 ATTTTACCCTATG-GGGTATTTCGATC
167838 ATTTTACCCTATGGGGTATTTC-AGTC
1 ATTTTACCCTATGGGGTATTTCGA-TC
*
167864 ATTCTACCCTATGAGGGTATTTC-AGTC
1 ATTTTACCCTATG-GGGTATTTCGA-TC
* *
167891 ATTTTATCCTACTGGGGTATTTCGACC
1 ATTTTACCCTA-TGGGGTATTTCGATC
* *
167918 ATTTTACCATATGAGGGTATTTCG-GC
1 ATTTTACCCTATG-GGGTATTTCGATC
167944 TATTTTACCCTATGGGAGTATTTC-AGTC
1 -ATTTTACCCTATGGG-GTATTTCGA-TC
167972 ATTTTACCCTATGAGGGTATTTC-AGTC
1 ATTTTACCCTATG-GGGTATTTCGA-TC
* *
167999 ATTTTATCCTATTGGGGTATTTCGATT
1 ATTTTACCCTA-TGGGGTATTTCGATC
* * *
168026 A-TTTACCCTATGGGGGCATTTTGGTC
1 ATTTTACCCTAT-GGGGTATTTCGATC
*
168052 ATTTTACCCTATGGGGTATTTCAATC
1 ATTTTACCCTATGGGGTATTTCGATC
* * *
168078 ATTTTACCTTATGAGGTATTTCGGTC
1 ATTTTACCCTATGGGGTATTTCGATC
168104 ATTTTACCCTATGGGGGTATTTC-AGTC
1 ATTTTACCCTAT-GGGGTATTTCGA-TC
* * *
168131 ATTCTACCCTATAGGGGTATTTTGGTC
1 ATTTTACCCTAT-GGGGTATTTCGATC
* *
168158 ATTATACCCTATGGGGGTATTT-TAGTC
1 ATTTTACCCTAT-GGGGTATTTCGA-TC
168185 ATTTTACCCTATGAGGGTATTTC
1 ATTTTACCCTATG-GGGTATTTC
168208 AGTGCAGATA
Statistics
Matches: 509, Mismatches: 74, Indels: 55
0.80 0.12 0.09
Matches are distributed among these distances:
25 1 0.00
26 130 0.26
27 369 0.72
28 9 0.02
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.42
Consensus pattern (26 bp):
ATTTTACCCTATGGGGTATTTCGATC
Found at i:167708 original size:80 final size:79
Alignment explanation
Indices: 167570--168207 Score: 603
Period size: 80 Copynumber: 8.0 Consensus size: 79
167560 TATAACAGTT
* * * * *
167570 ATTTTACCCTATCGGGGTATTTCGATCATTTTACCCTATAGGGTTATTTCGATCATTTTAACCTA
1 ATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT-GGGGTATTTCGATTATTTTACCCTA
*
167635 TGGGGATATTTCGTA
65 TGGGGATATTTCGTC
* * * *
167650 ATTTTTCACTATGGGGGTATTTTGGTCATTTTACCTTATGGGGGTATTTCGATTATTTTACCCTA
1 ATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT-GGGGTATTTCGATTATTTTACCCTA
* *
167715 TGGGGGTATTTCGATT
65 TGGGGATATTTCG-TC
* * * * * * *
167731 ATATTACCCTATGGAGGCATTTCAGTCATTTTACCCTATAGGGTATTTCGGTTATTTTACCTTAC
1 ATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGTATTTCGATTATTTTACCCTA-
*
167796 AGGGG-TATTTCGATC
65 TGGGGATATTTCG-TC
** * * *
167811 ATTTTACCCTATGAAGGTATTTCGGTTATTTTACCCTATGGGGTATTTC-AGTCATTCTACCCTA
1 ATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGTATTTCGA-TTATTTTACCCTA
167875 TGAGGG-TATTTCAGTC
65 TG-GGGATATTTC-GTC
* ** * **
167891 ATTTTATCCTACT-GGGGTATTTCGACCATTTTACCATATGAGGGTATTTCGGCTATTTTACCCT
1 ATTTTACCCTA-TGGGGGTATTTCGGTCATTTTACCCTATG-GGGTATTTCGATTATTTTACCCT
167955 AT-GGGAGTATTTCAGTC
64 ATGGGGA-TATTTC-GTC
* * *
167972 ATTTTACCCTATGAGGGTATTTCAGTCATTTTATCCTATTGGGGTATTTCGATTA-TTTACCCTA
1 ATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTA-TGGGGTATTTCGATTATTTTACCCTA
*
168036 TGGGGGCAT-TTTGGTC
65 T-GGGG-ATATTTCGTC
** * * * *
168052 ATTTTACCCTAT-GGGGTATTTCAATCATTTTACCTTATGAGGTATTTCGGTCATTTTACCCTAT
1 ATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGTATTTCGATTATTTTACCCTAT
*
168116 GGGGGTATTTCAGTC
66 GGGGATATTTC-GTC
* * * * * *
168131 ATTCTACCCTATAGGGGTATTTTGGTCATTATACCCTATGGGGGTATTT-TAGTCATTTTACCCT
1 ATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT-GGGGTATTTCGA-TTATTTTACCCT
168195 ATGAGGG-TATTTC
64 ATG-GGGATATTTC
168208 AGTGCAGATA
Statistics
Matches: 461, Mismatches: 75, Indels: 43
0.80 0.13 0.07
Matches are distributed among these distances:
77 1 0.00
78 20 0.04
79 49 0.11
80 240 0.52
81 141 0.31
82 9 0.02
83 1 0.00
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.42
Consensus pattern (79 bp):
ATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTATGGGGTATTTCGATTATTTTACCCTAT
GGGGATATTTCGTC
Found at i:167729 original size:107 final size:106
Alignment explanation
Indices: 167570--168207 Score: 768
Period size: 107 Copynumber: 6.0 Consensus size: 106
167560 TATAACAGTT
* * * * *
167570 ATTTTACCCTATCGGGGTATTTCGATCATTTTACCCTATAGGGTTATTTCGATCATTTTAACCTA
1 ATTTTA-CCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTA
* * * * *
167635 TGGGGATATTTC-GTAATTTTTCACTATGGGGGTATTTTGGTC
65 TGGGG-TATTTCAGTCATTTTACCCTATGAGGGTATTTCGGTC
* * * *
167677 ATTTTACCTTATGGGGGTATTTCGATTATTTTACCCTATGGGGGTATTTCGATTATATTACCCTA
1 ATTTTACC-TATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTA
* *
167742 TGGAGGCATTTCAGTCATTTTACCCTAT-AGGGTATTTCGGTT
65 TGG-GGTATTTCAGTCATTTTACCCTATGAGGGTATTTCGGTC
** ** *
167784 ATTTTACCTTACAGGGGTATTTCGATCATTTTACCCTATGAAGGTATTTCGGTTATTTTACCCTA
1 ATTTTACC-TATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTA
* *
167849 TGGGGTATTTCAGTCATTCTACCCTATGAGGGTATTTCAGTC
65 TGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTTCGGTC
* * *
167891 ATTTTATCCTACT-GGGGTATTTCGACCATTTTACCATATGAGGGTATTTCGG-CTATTTTACCC
1 ATTTTA-CCTA-TGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGGTC-ATTTTACCC
*
167954 TATGGGAGTATTTCAGTCATTTTACCCTATGAGGGTATTTCAGTC
63 TATGGG-GTATTTCAGTCATTTTACCCTATGAGGGTATTTCGGTC
* * * *
167999 ATTTTATCCTATTGGGGTATTTCGATTA-TTTACCCTATGGGGGCATTTTGGTCATTTTACCCTA
1 ATTTTA-CCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTA
* *
168063 TGGGGTATTTCAATCATTTTACCTTATGA-GGTATTTCGGTC
65 TGGGGTATTTCAGTCATTTTACCCTATGAGGGTATTTCGGTC
* * * *
168104 ATTTTACCCTATGGGGGTATTTC-AGTCATTCTACCCTATAGGGGTATTTTGGTCATTATACCCT
1 ATTTTA-CCTATGGGGGTATTTCGA-TCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCT
*
168168 ATGGGGGTATTTTAGTCATTTTACCCTATGAGGGTATTTC
64 AT-GGGGTATTTCAGTCATTTTACCCTATGAGGGTATTTC
168208 AGTGCAGATA
Statistics
Matches: 467, Mismatches: 50, Indels: 27
0.86 0.09 0.05
Matches are distributed among these distances:
104 1 0.00
105 34 0.07
106 80 0.17
107 266 0.57
108 86 0.18
ACGTcount: A:0.21, C:0.17, G:0.20, T:0.42
Consensus pattern (106 bp):
ATTTTACCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGGTCATTTTACCCTAT
GGGGTATTTCAGTCATTTTACCCTATGAGGGTATTTCGGTC
Found at i:173703 original size:53 final size:53
Alignment explanation
Indices: 173645--173769 Score: 173
Period size: 53 Copynumber: 2.4 Consensus size: 53
173635 TTATGCAAGG
173645 ATGATGATAGGCA-TGAGGG-GGAAAGATAGCTAAGAGAGTTGAGAGAGGAGAGA
1 ATGATGA-AGG-AGTGAGGGAGGAAAGATAGCTAAGAGAGTTGAGAGAGGAGAGA
* * **
173698 ATGATGAATGAGTGAGGGATGATTGATAGCTAAGAGAGTTGAGAGAGGAGAGA
1 ATGATGAAGGAGTGAGGGAGGAAAGATAGCTAAGAGAGTTGAGAGAGGAGAGA
*
173751 ATGATGAATGAGTGAGGGA
1 ATGATGAAGGAGTGAGGGA
173770 TGATTGAAAA
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
51 1 0.02
52 8 0.12
53 57 0.86
ACGTcount: A:0.38, C:0.02, G:0.41, T:0.18
Consensus pattern (53 bp):
ATGATGAAGGAGTGAGGGAGGAAAGATAGCTAAGAGAGTTGAGAGAGGAGAGA
Found at i:173770 original size:53 final size:53
Alignment explanation
Indices: 173669--173776 Score: 216
Period size: 53 Copynumber: 2.0 Consensus size: 53
173659 GAGGGGGAAA
173669 GATAGCTAAGAGAGTTGAGAGAGGAGAGAATGATGAATGAGTGAGGGATGATT
1 GATAGCTAAGAGAGTTGAGAGAGGAGAGAATGATGAATGAGTGAGGGATGATT
173722 GATAGCTAAGAGAGTTGAGAGAGGAGAGAATGATGAATGAGTGAGGGATGATT
1 GATAGCTAAGAGAGTTGAGAGAGGAGAGAATGATGAATGAGTGAGGGATGATT
173775 GA
1 GA
173777 AAAAGTGAGA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 55 1.00
ACGTcount: A:0.38, C:0.02, G:0.40, T:0.20
Consensus pattern (53 bp):
GATAGCTAAGAGAGTTGAGAGAGGAGAGAATGATGAATGAGTGAGGGATGATT
Found at i:175603 original size:26 final size:26
Alignment explanation
Indices: 175574--175636 Score: 92
Period size: 26 Copynumber: 2.4 Consensus size: 26
175564 TTTACCTTTA
*
175574 GTAAAATTTT-TATGATTTTATCCTTG
1 GTAAAATTTTGT-TGATTTTATCCATG
*
175600 GTAAAATTTTGTTGATTTTGTCCATG
1 GTAAAATTTTGTTGATTTTATCCATG
175626 GTAAAATTTTG
1 GTAAAATTTTG
175637 AGAAAATATG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 33 0.97
27 1 0.03
ACGTcount: A:0.27, C:0.06, G:0.16, T:0.51
Consensus pattern (26 bp):
GTAAAATTTTGTTGATTTTATCCATG
Found at i:178767 original size:18 final size:20
Alignment explanation
Indices: 178746--178795 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 20
178736 AAAGAAAGAC
178746 AGAAAAAGA-AATCAAAAA-
1 AGAAAAAGAGAATCAAAAAG
* *
178764 AGAAACAGAGAATGAAAAAG
1 AGAAAAAGAGAATCAAAAAG
178784 AGCAAAAAGAGA
1 AG-AAAAAGAGA
178796 TTGAGAGTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 8 0.31
19 8 0.31
20 2 0.08
21 8 0.31
ACGTcount: A:0.70, C:0.06, G:0.20, T:0.04
Consensus pattern (20 bp):
AGAAAAAGAGAATCAAAAAG
Found at i:192769 original size:40 final size:40
Alignment explanation
Indices: 192714--192791 Score: 147
Period size: 40 Copynumber: 1.9 Consensus size: 40
192704 AAAATAACAC
*
192714 TCTTACAAAATTATTCTCCCAAGAACAAATTAAATGTCAT
1 TCTTACAAAATTATTCTCCCAAAAACAAATTAAATGTCAT
192754 TCTTACAAAATTATTCTCCCAAAAACAAATTAAATGTC
1 TCTTACAAAATTATTCTCCCAAAAACAAATTAAATGTC
192792 TAACTCTCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.44, C:0.21, G:0.04, T:0.32
Consensus pattern (40 bp):
TCTTACAAAATTATTCTCCCAAAAACAAATTAAATGTCAT
Found at i:198334 original size:560 final size:561
Alignment explanation
Indices: 197217--198337 Score: 1929
Period size: 561 Copynumber: 2.0 Consensus size: 561
197207 TTCTTTGCAA
*
197217 GTTCAATATGCAGAATGCTAAGCCTATTAGTACTTCTTTGGCGGCCCATTTCACACTTTCATCAG
1 GTTCAATATGCAGAATGCTAAGCCTATTAGTACTTCTTTGGCGGCCAATTTCACACTTTCATCAG
*
197282 CTTTGTCTCCACAATTAGATGATGAGATTGACTACATGTCAAATGTTTCATATTCTAGTGCAGTG
66 CTTTGTCTCCACAATTAGATGATGAGATTGACTACATGTCAAATGTTTCAAATTCTAGTGCAGTG
* * *
197347 GGACCTCTTATATATGCTATGGTTTCTTCATGTCTAGATTTATCATATGTAGTCAATATAGTTAG
131 GGACCTCTTATATATGCTATGGTTTATTCATGTCCAGATTTATCATATGCAGTCAATATAGTTAG
* * * * *
197412 TAGATACATAACGAATCTCGGTAAAGGATATTGAAAAGTAGTTCAGTGGATTTTGATATACTTAT
196 TAGATACATAACGAATCTCAGTAAAGAATATTGAAAAGCAGTTCAGGGGATTTTGAGATACTTAT
197477 GAGGCACAACTGACGTTTGCTTACAATTAGGAAGAAATAGAGATGGATTCATTAGGTATGTTGAT
261 GAGGCACAACTGACGTTTGCTTACAATTAGGAAGAAATAGAGATGGATTCATTAGGTATGTTGAT
197542 ATTGATTTTACTAGAGACCTTGATAAAAGAAGATCTCTTACGAGTTATGTCTTTACAATTGGGGG
326 ATTGATTTTACTAGAGACCTTGATAAAAGAAGATCTCTTACGAGTTATGTCTTTACAATTGGGGG
197607 TTGTGCAATTAGCTGGAAAGCCACATTGCAAACTACTGTCGCTTTGTTTACTACTGAAGTAGAGT
391 TTGTGCAATTAGCTGGAAAGCCACATTGCAAACTACTGTCGCTTTGTTTACTACTGAAGTAGAGT
* *
197672 GCATGGCGATTACTAAGGCTTGCAAAGAAGCTATTTGGTTAAAGGGGCTCTTTACTGAACTCAAT
456 GCATGGCGATTACTAAGGCTTGCAAAGAAGATATTTGGTTAAAGAGGCTCTTTACTGAACTCAAT
197737 AAAGACCTTCAAATCAGTATAGTATTTTGTGACAGTCAAAG
521 AAAGACCTTCAAATCAGTATAGTATTTTGTGACAGTCAAAG
**
197778 GTTCAATATGTTGAATGCTAAGCCTATTAGTACTTCTTTGGCGGCCAATTTCACACTTTCATCAG
1 GTTCAATATGCAGAATGCTAAGCCTATTAGTACTTCTTTGGCGGCCAATTTCACACTTTCATCAG
*
197843 CTTTGTCTCCCCAATTAGATGATGAGATTGACTACATGTCAAATGTTTCAAATTCTAGTGCAGTG
66 CTTTGTCTCCACAATTAGATGATGAGATTGACTACATGTCAAATGTTTCAAATTCTAGTGCAGTG
* * * *
197908 GGACCTCTTATGTATGCTATGGTTTATTCCTGTCCGGATTTATCATATGCAGTCAATGTAGTTAG
131 GGACCTCTTATATATGCTATGGTTTATTCATGTCCAGATTTATCATATGCAGTCAATATAGTTAG
*
197973 TAGATACATGACGAATCTCAGTAAAGAATATTGAAAAGCAGTTCAGGGGATTTTGAGATACTTAT
196 TAGATACATAACGAATCTCAGTAAAGAATATTGAAAAGCAGTTCAGGGGATTTTGAGATACTTAT
* * * * *
198038 GAGGCACAACTGATGTTTGCTTATAGTTTGG-AGAAATAGAGATGGATTCATTGGGTATGTTGAT
261 GAGGCACAACTGACGTTTGCTTACAATTAGGAAGAAATAGAGATGGATTCATTAGGTATGTTGAT
* * *
198102 GTTGATTTTACTAGAGACCTTGATAAAAGAAGATCTTTTATGAGTTATGTCTTTACAATTGGGGG
326 ATTGATTTTACTAGAGACCTTGATAAAAGAAGATCTCTTACGAGTTATGTCTTTACAATTGGGGG
* *
198167 TTGTGCAATTAGCTGGAAAGCCACCTTGCAAACTATTGTCGCTTTGTTTACTACTGAAGTAGAGT
391 TTGTGCAATTAGCTGGAAAGCCACATTGCAAACTACTGTCGCTTTGTTTACTACTGAAGTAGAGT
* * *
198232 GCATGGTGATTACTGAGGCTTGCAAAGAAGATATTTGGTTAAAGAGGCTCTTTAGTGAACTCAAT
456 GCATGGCGATTACTAAGGCTTGCAAAGAAGATATTTGGTTAAAGAGGCTCTTTACTGAACTCAAT
*
198297 GAAGACCTTCAAATCAGTATAGTATTTTGTGACAGTCAAAG
521 AAAGACCTTCAAATCAGTATAGTATTTTGTGACAGTCAAAG
198338 TGTCATCTTT
Statistics
Matches: 526, Mismatches: 34, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
560 257 0.49
561 269 0.51
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (561 bp):
GTTCAATATGCAGAATGCTAAGCCTATTAGTACTTCTTTGGCGGCCAATTTCACACTTTCATCAG
CTTTGTCTCCACAATTAGATGATGAGATTGACTACATGTCAAATGTTTCAAATTCTAGTGCAGTG
GGACCTCTTATATATGCTATGGTTTATTCATGTCCAGATTTATCATATGCAGTCAATATAGTTAG
TAGATACATAACGAATCTCAGTAAAGAATATTGAAAAGCAGTTCAGGGGATTTTGAGATACTTAT
GAGGCACAACTGACGTTTGCTTACAATTAGGAAGAAATAGAGATGGATTCATTAGGTATGTTGAT
ATTGATTTTACTAGAGACCTTGATAAAAGAAGATCTCTTACGAGTTATGTCTTTACAATTGGGGG
TTGTGCAATTAGCTGGAAAGCCACATTGCAAACTACTGTCGCTTTGTTTACTACTGAAGTAGAGT
GCATGGCGATTACTAAGGCTTGCAAAGAAGATATTTGGTTAAAGAGGCTCTTTACTGAACTCAAT
AAAGACCTTCAAATCAGTATAGTATTTTGTGACAGTCAAAG
Found at i:199316 original size:26 final size:26
Alignment explanation
Indices: 199287--199340 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
199277 TGAAATAAAA
199287 CTCTTCTTCTAATGATTATGAGAGTG
1 CTCTTCTTCTAATGATTATGAGAGTG
199313 CTCTTCTTCTAATGATTATGAGAGTG
1 CTCTTCTTCTAATGATTATGAGAGTG
199339 CT
1 CT
199341 AAAGTACATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.43
Consensus pattern (26 bp):
CTCTTCTTCTAATGATTATGAGAGTG
Found at i:203644 original size:95 final size:95
Alignment explanation
Indices: 203478--203675 Score: 333
Period size: 95 Copynumber: 2.1 Consensus size: 95
203468 CCACACCGGC
* * * *
203478 GTGTGGTCGGTCGTGTGGTTGGCTGTATGCGAGACATAGCCGTGTATCTGACAAAGGTGCAGCCC
1 GTGTGGCCGGCCGTGTAGTTGGCTGTATGCGAGACACAGCCGTGTATCTGACAAAGGTGCAGCCC
203543 TCCGCAAGACACGGCTGTGTGGTGATGTGG
66 TCCGCAAGACACGGCTGTGTGGTGATGTGG
*
203573 GTGTGGCCGGCCGTGTAGTTGGCTGTATGCGAGACACAGCCGTGTGTCTGACAAAGGTGCAGCCC
1 GTGTGGCCGGCCGTGTAGTTGGCTGTATGCGAGACACAGCCGTGTATCTGACAAAGGTGCAGCCC
* *
203638 TGCGCAAGACACGGCTGTGTGGTGGTGTGG
66 TCCGCAAGACACGGCTGTGTGGTGATGTGG
203668 GTGTGGCC
1 GTGTGGCC
203676 ATGTGGGCCA
Statistics
Matches: 96, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
95 96 1.00
ACGTcount: A:0.16, C:0.21, G:0.39, T:0.24
Consensus pattern (95 bp):
GTGTGGCCGGCCGTGTAGTTGGCTGTATGCGAGACACAGCCGTGTATCTGACAAAGGTGCAGCCC
TCCGCAAGACACGGCTGTGTGGTGATGTGG
Found at i:211460 original size:357 final size:356
Alignment explanation
Indices: 210800--211512 Score: 1392
Period size: 357 Copynumber: 2.0 Consensus size: 356
210790 CATATTTCTC
210800 TTAACTAGCAAATCCTTGAGAAATTACTCTATTGGTTGGCCACCTTGAGGAGTAGTTTTTGGAAT
1 TTAACTAGCAAATCCTTGAGAAATTACTCTATTGGTTGGCCACCTTGAGGAGTAGTTTTTGGAAT
210865 AGCATGTAATATCCCTAAACCGGGTCTAGCAGTTTCAGGTATATTTTTTCAGGTTCCGAATGTGA
66 AGCATGTAATATCCCTAAACCGGGTCTAGCAGTTTCAGGTATATTTTTTCAGGTTCCGAATGTGA
210930 AACTAGGAATTTATGGGGTTTCTAATCATTTTTAATTTATTTTAGGAGGTTAATTTCATCTAAAA
131 AACTAGGAATTTATGGGGTTTCTAATCATTTTTAATTTATTTTAGGAGGTTAATTTCATCTAAAA
210995 TCGATTAAACAATAATCCAAAAAAATAAAAATATTTTTGGAAAATTAATTTTAAAGTAATTAAAT
196 TCGATTAAACAATAATCCAAAAAAATAAAAATATTTTTGGAAAATTAATTTTAAAGTAATTAAAT
*
211060 AATTATTAGTGAGAATAATTAATTTGGGTCAAGAAAAAATTTTAAAATAATTTTTATTGGGGGTT
261 AATTATTAGTGAAAATAATTAATTTGGGTCAAGAAAAAATTTTAAAATAATTTTTATT-GGGGTT
211125 AATTTGAGTTAAATTTAAATATTAATTAAATA
325 AATTTGAGTTAAATTTAAATATTAATTAAATA
211157 TTAACTAGCAAATCCTTGAGAAATTACTCTATTGGTTGGCCACCTTGAGGAGTAGTTTTTGGAAT
1 TTAACTAGCAAATCCTTGAGAAATTACTCTATTGGTTGGCCACCTTGAGGAGTAGTTTTTGGAAT
211222 AGCATGTAATATCCCTAAACCGGGTCTAGCAGTTTCAGGTATATTTTTTCAGGTTCCGAATGTGA
66 AGCATGTAATATCCCTAAACCGGGTCTAGCAGTTTCAGGTATATTTTTTCAGGTTCCGAATGTGA
211287 AACTAGGAATTTATGGGGTTTCTAATCATTTTTAATTTATTTTAGGAGGTTAATTTCATCTAAAA
131 AACTAGGAATTTATGGGGTTTCTAATCATTTTTAATTTATTTTAGGAGGTTAATTTCATCTAAAA
211352 TCGATTAAACAATAATCCAAAAAAATAAAAATATTTTTGGAAAATTAATTTTAAAGTAATTAAAT
196 TCGATTAAACAATAATCCAAAAAAATAAAAATATTTTTGGAAAATTAATTTTAAAGTAATTAAAT
211417 AATTATTAGTGAAAATAATTAATTTGGGTCAA-AAAATAATTTTAAAATAATTTTTATTGGGGTT
261 AATTATTAGTGAAAATAATTAATTTGGGTCAAGAAAA-AATTTTAAAATAATTTTTATTGGGGTT
211481 AATTTGAGTTAAATTTAAATATTAATTAAATA
325 AATTTGAGTTAAATTTAAATATTAATTAAATA
211513 AGATTTAATT
Statistics
Matches: 354, Mismatches: 1, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
356 42 0.12
357 312 0.88
ACGTcount: A:0.37, C:0.09, G:0.15, T:0.38
Consensus pattern (356 bp):
TTAACTAGCAAATCCTTGAGAAATTACTCTATTGGTTGGCCACCTTGAGGAGTAGTTTTTGGAAT
AGCATGTAATATCCCTAAACCGGGTCTAGCAGTTTCAGGTATATTTTTTCAGGTTCCGAATGTGA
AACTAGGAATTTATGGGGTTTCTAATCATTTTTAATTTATTTTAGGAGGTTAATTTCATCTAAAA
TCGATTAAACAATAATCCAAAAAAATAAAAATATTTTTGGAAAATTAATTTTAAAGTAATTAAAT
AATTATTAGTGAAAATAATTAATTTGGGTCAAGAAAAAATTTTAAAATAATTTTTATTGGGGTTA
ATTTGAGTTAAATTTAAATATTAATTAAATA
Found at i:213611 original size:7 final size:7
Alignment explanation
Indices: 213588--213625 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
213578 TTTTATTGTA
213588 ATTGGAC
1 ATTGGAC
* *
213595 TTTAGAC
1 ATTGGAC
213602 ATTGGAC
1 ATTGGAC
213609 ATTGGAC
1 ATTGGAC
213616 ATTGGAC
1 ATTGGAC
213623 ATT
1 ATT
213626 TATTTTGGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.34
Consensus pattern (7 bp):
ATTGGAC
Found at i:219707 original size:27 final size:27
Alignment explanation
Indices: 219189--219699 Score: 575
Period size: 27 Copynumber: 19.0 Consensus size: 27
219179 ACGTTGGGCC
*
219189 GAAATACCCCCACAGGGTAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACT
* *
219216 GAAATACCCCCATAGGGTAGAATGACC
1 GAAATACCCCCATAGGGTAAAATGACT
* **
219243 AAAATACCCTTATAGGGTAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACT
* * *
219270 GAAATACCCTCATAAGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACT
* *
219297 GAAATACCCCCATAGGGTAGAAT-AAT
1 GAAATACCCCCATAGGGTAAAATGACT
* * * * *
219323 CGAAATACCCCTATAGAGTAGAATAATT
1 -GAAATACCCCCATAGGGTAAAATGACT
*
219351 GAAATAACCCCATAGGGTAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACT
* *
219378 GAAATATCCCCATAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACT
* * *
219405 GCAATACACCCATAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACT
*
219432 GAAATACCCTCATAGGGTAAAATGA-T
1 GAAATACCCCCATAGGGTAAAATGACT
*
219458 CGAAATA-CCCCATAGGGTAGAATGACT
1 -GAAATACCCCCATAGGGTAAAATGACT
** *
219485 GAAATACCCTAATAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACT
** *
219512 GAAATACCCTTATAGGGTAGAATGACT
1 GAAATACCCCCATAGGGTAAAATGACT
*
219539 GAAATA-CCCCATAGGGTACAATGA-T
1 GAAATACCCCCATAGGGTAAAATGACT
* *
219564 CGAAATACCCCCATAGGGTAAAATAACC
1 -GAAATACCCCCATAGGGTAAAATGACT
* *
219592 AAAATACCCTCATAGGGTAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACT
* *
219619 AAAATA-CCCTATAGGGTAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACT
* * * * *
219645 AAAATATCGCTATAGGGTAAAATGACC
1 GAAATACCCCCATAGGGTAAAATGACT
219672 GAAATACCCCCATAGGGTAAAATGACT
1 GAAATACCCCCATAGGGTAAAATGACT
219699 G
1 G
219700 TTATACCCTT
Statistics
Matches: 412, Mismatches: 63, Indels: 18
0.84 0.13 0.04
Matches are distributed among these distances:
25 1 0.00
26 68 0.17
27 341 0.83
28 2 0.00
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (27 bp):
GAAATACCCCCATAGGGTAAAATGACT
Found at i:219708 original size:80 final size:79
Alignment explanation
Indices: 219187--219699 Score: 620
Period size: 80 Copynumber: 6.4 Consensus size: 79
219177 CCACGTTGGG
* * **
219187 CCGAAATACCCCCACAGGGTAAAATGACTGAAATACCCCCATAGGGTAGAATGACCAAAATACCC
1 CCGAAATACCCTCATAGGGTAAAATGACTGAAATA-CCCCATAGGGTAGAATGACTGAAATACCC
219252 TTATAGGGTAAAATGA
65 -TATAGGGTAAAATGA
* * * *
219268 CTGAAATACCCTCATAAGGTAAAATGACCGAAATACCCCCATAGGGTAGAAT-AATCGAAATACC
1 CCGAAATACCCTCATAGGGTAAAATGACTGAAATA-CCCCATAGGGTAGAATGACT-GAAATA-C
* * *
219332 CCTATAGAGTAGAATAA
63 CCTATAGGGTAAAATGA
** * * *
219349 TTGAAATAACCC-CATAGGGTAAAATGACTGAAATATCCCCATAGGGTAAAATGACCGCAATACA
1 CCGAAAT-ACCCTCATAGGGTAAAATGACTGAAATA-CCCCATAGGGTAGAATGACTGAAATAC-
*
219413 CCCATAGGGTAAAATGA
63 CCTATAGGGTAAAATGA
219430 CCGAAATACCCTCATAGGGTAAAATGA-TCGAAATACCCCATAGGGTAGAATGACTGAAATACCC
1 CCGAAATACCCTCATAGGGTAAAATGACT-GAAATACCCCATAGGGTAGAATGACTGAAATACCC
219494 TAATAGGGTAAAATGA
65 T-ATAGGGTAAAATGA
* * *
219510 CCGAAATACCCTTATAGGGTAGAATGACTGAAATACCCCATAGGGTACAATGA-TCGAAATACCC
1 CCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCATAGGGTAGAATGACT-GAAATA-CC
* *
219574 CCATAGGGTAAAATAA
64 CTATAGGGTAAAATGA
* * * * * *
219590 CCAAAATACCCTCATAGGGTAAAATGACTAAAATACCCTATAGGGTAAAATGACTAAAATATCGC
1 CCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCATAGGGTAGAATGACTGAAATA-CCC
219655 TATAGGGTAAAATGA
65 TATAGGGTAAAATGA
*
219670 CCGAAATACCCCCATAGGGTAAAATGACTG
1 CCGAAATACCCTCATAGGGTAAAATGACTG
219700 TTATACCCTT
Statistics
Matches: 372, Mismatches: 48, Indels: 25
0.84 0.11 0.06
Matches are distributed among these distances:
79 3 0.01
80 206 0.55
81 155 0.42
82 8 0.02
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.20
Consensus pattern (79 bp):
CCGAAATACCCTCATAGGGTAAAATGACTGAAATACCCCATAGGGTAGAATGACTGAAATACCCT
ATAGGGTAAAATGA
Found at i:221946 original size:14 final size:13
Alignment explanation
Indices: 221898--221947 Score: 52
Period size: 12 Copynumber: 4.0 Consensus size: 13
221888 ACTAGTCATA
221898 GAGAGA-ATTGAG
1 GAGAGATATTGAG
* *
221910 GAGGGATATT-TG
1 GAGAGATATTGAG
221922 GAGAGAT-TTGAG
1 GAGAGATATTGAG
221934 GAGAGAATATTGAG
1 GAGAG-ATATTGAG
221948 ATTTGGGGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
11 2 0.07
12 18 0.60
13 5 0.17
14 5 0.17
ACGTcount: A:0.36, C:0.00, G:0.40, T:0.24
Consensus pattern (13 bp):
GAGAGATATTGAG
Found at i:222660 original size:27 final size:27
Alignment explanation
Indices: 222612--223091 Score: 469
Period size: 27 Copynumber: 18.1 Consensus size: 27
222602 GATTGATTGC
* *
222612 ACCGAAATACCCTCATAGGGTAAAATG
1 ACCGAAATACCCCCATAAGGTAAAATG
* *
222639 ACTGAAATACCCCCAAAAGGTAAAATG
1 ACCGAAATACCCCCATAAGGTAAAATG
* *
222666 ACCAAAATACCCTCATAAGGTAAAATG
1 ACCGAAATACCCCCATAAGGTAAAATG
* *
222693 ACCGAAATA-CCTCATAGGGTAAAATG
1 ACCGAAATACCCCCATAAGGTAAAATG
* *
222719 ACCAAAATACCCTCAT-AGCGTAAAATG
1 ACCGAAATACCCCCATAAG-GTAAAATG
* *
222746 ATCGAAATACCCCTATAAGGTAAAATG
1 ACCGAAATACCCCCATAAGGTAAAATG
* * *
222773 ACCGAAAGACCTCCATAGGGTAAAATG
1 ACCGAAATACCCCCATAAGGTAAAATG
* ** *
222800 ATCGAAATACCCCCATCGGGTAGAATG
1 ACCGAAATACCCCCATAAGGTAAAATG
* * * *
222827 ACTGAAATACCCTCATAAGATAAAACG
1 ACCGAAATACCCCCATAAGGTAAAATG
*
222854 ACCGAAATACCCCCATAGGGTAAAATG
1 ACCGAAATACCCCCATAAGGTAAAATG
* * *
222881 ACCGACAT-CCCCCATAGGGTATAAT-
1 ACCGAAATACCCCCATAAGGTAAAATG
*
222906 ---G--ATACCCCCGT-AGGATAAAATG
1 ACCGAAATACCCCCATAAGG-TAAAATG
* * *
222928 ACCAAAATACCCGCATAGGGTAAAATG
1 ACCGAAATACCCCCATAAGGTAAAATG
* * *
222955 ACCAAAATACCCCTTATAAGGTAAATTG
1 ACCGAAATACCCC-CATAAGGTAAAATG
* *
222983 ATCGAAATACCCCTATAA-GTAAAATG
1 ACCGAAATACCCCCATAAGGTAAAATG
* *
223009 ATCGAAATACCCCCATAAGGTAGAATG
1 ACCGAAATACCCCCATAAGGTAAAATG
* * *
223036 ACTGAAATACCCCCACAGGGTAAAATG
1 ACCGAAATACCCCCATAAGGTAAAATG
* *
223063 ACCGAAATATCCCCATAGGGTAAAATG
1 ACCGAAATACCCCCATAAGGTAAAATG
223090 AC
1 AC
223092 TGTTATACCC
Statistics
Matches: 374, Mismatches: 65, Indels: 28
0.80 0.14 0.06
Matches are distributed among these distances:
20 4 0.01
21 11 0.03
22 1 0.00
26 65 0.17
27 267 0.71
28 26 0.07
ACGTcount: A:0.42, C:0.23, G:0.16, T:0.18
Consensus pattern (27 bp):
ACCGAAATACCCCCATAAGGTAAAATG
Found at i:222919 original size:21 final size:21
Alignment explanation
Indices: 222889--222928 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
222879 TGACCGACAT
* *
222889 CCCCCATAGGGTATAATGATA
1 CCCCCATAGGATAAAATGATA
*
222910 CCCCCGTAGGATAAAATGA
1 CCCCCATAGGATAAAATGA
222929 CCAAAATACC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.35, C:0.25, G:0.20, T:0.20
Consensus pattern (21 bp):
CCCCCATAGGATAAAATGATA
Found at i:222929 original size:47 final size:48
Alignment explanation
Indices: 222860--222955 Score: 131
Period size: 47 Copynumber: 2.0 Consensus size: 48
222850 AACGACCGAA
* * * *
222860 ATACCCCCATAGGGTAAAATGACCGACAT-CCCCCATAGGGTATAATG
1 ATACCCCCATAGGATAAAATGACCAAAATACCCCCATAGGGTAAAATG
* *
222907 ATACCCCCGTAGGATAAAATGACCAAAATACCCGCATAGGGTAAAATG
1 ATACCCCCATAGGATAAAATGACCAAAATACCCCCATAGGGTAAAATG
222955 A
1 A
222956 CCAAAATACC
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
47 25 0.60
48 17 0.40
ACGTcount: A:0.39, C:0.25, G:0.19, T:0.18
Consensus pattern (48 bp):
ATACCCCCATAGGATAAAATGACCAAAATACCCCCATAGGGTAAAATG
Found at i:223007 original size:209 final size:209
Alignment explanation
Indices: 222707--223091 Score: 585
Period size: 209 Copynumber: 1.8 Consensus size: 209
222697 AAATACCTCA
* * * *
222707 TAGGGTAAAATGACCAAAATACCCTCATAGCGTAAAATGATCGAAATACCCCTATAAGGTAAAAT
1 TAGGATAAAATGACCAAAATACCCGCATAGCGTAAAATGACCAAAATACCCCTATAAGGTAAAAT
* **
222772 GACCGAAAGACCTCCATAGGGTAAAATGATCGAAATACCCCCATCGGGTAGAATGACTGAAATAC
66 GACCGAAAGACCTCCATAGAGTAAAATGATCGAAATACCCCCATAAGGTAGAATGACTGAAATAC
* *
222837 CCTCATAAGATAAAACGACCGAAATACCCCCATAGGGTAAAATGACCGACATCCCCCATAGGGTA
131 CCCCACAAGATAAAACGACCGAAATACCCCCATAGGGTAAAATGACCGACATCCCCCATAGGGTA
222902 TAATGATACCCCCG
196 TAATGATACCCCCG
* *
222916 TAGGATAAAATGACCAAAATACCCGCATAGGGTAAAATGACCAAAATACCCCTTATAAGGTAAAT
1 TAGGATAAAATGACCAAAATACCCGCATAGCGTAAAATGACCAAAATACCCC-TATAAGGTAAAA
* *
222981 TGATCGAAATACC-CCTATA-AGTAAAATGATCGAAATACCCCCATAAGGTAGAATGACTGAAAT
65 TGACCGAAAGACCTCC-ATAGAGTAAAATGATCGAAATACCCCCATAAGGTAGAATGACTGAAAT
* * * *
223044 ACCCCCACAGGGTAAAATGACCGAAATATCCCCATAGGGTAAAATGAC
129 ACCCCCACAAGATAAAACGACCGAAATACCCCCATAGGGTAAAATGAC
223092 TGTTATACCC
Statistics
Matches: 157, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
209 132 0.84
210 25 0.16
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (209 bp):
TAGGATAAAATGACCAAAATACCCGCATAGCGTAAAATGACCAAAATACCCCTATAAGGTAAAAT
GACCGAAAGACCTCCATAGAGTAAAATGATCGAAATACCCCCATAAGGTAGAATGACTGAAATAC
CCCCACAAGATAAAACGACCGAAATACCCCCATAGGGTAAAATGACCGACATCCCCCATAGGGTA
TAATGATACCCCCG
Found at i:223158 original size:16 final size:15
Alignment explanation
Indices: 223137--223178 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
223127 CTTTATGTTA
223137 TCTATGATTGATTTG
1 TCTATGATTGATTTG
223152 CTCTATGATATG-TTTG
1 -TCTATGAT-TGATTTG
*
223168 ACTATGATTGA
1 TCTATGATTGA
223179 GCTTGACATT
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 2 0.09
15 7 0.30
16 12 0.52
17 2 0.09
ACGTcount: A:0.24, C:0.10, G:0.19, T:0.48
Consensus pattern (15 bp):
TCTATGATTGATTTG
Found at i:228083 original size:15 final size:15
Alignment explanation
Indices: 228063--228091 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
228053 TAAAAAAAAA
228063 TTATCATTAAACCAT
1 TTATCATTAAACCAT
228078 TTATCATTAAACCA
1 TTATCATTAAACCA
228092 AAGTTTTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.21, G:0.00, T:0.38
Consensus pattern (15 bp):
TTATCATTAAACCAT
Found at i:232116 original size:16 final size:16
Alignment explanation
Indices: 232097--232203 Score: 63
Period size: 16 Copynumber: 6.4 Consensus size: 16
232087 AAAATGACGA
232097 AAAATGAAAGTTTTCT
1 AAAATGAAAGTTTTCT
* * *
232113 AAAAATTAAAGTTTCCA
1 -AAAATGAAAGTTTTCT
** *
232130 AAAATGAAAAATTACT
1 AAAATGAAAGTTTTCT
* *
232146 AAAAATAATAAGTTTTCAA
1 -AAAATGA-AAGTTTTC-T
232165 AAAATAGAAAGTTTT-T
1 AAAAT-GAAAGTTTTCT
* *
232181 AGGAATGGAAGTTTTCT
1 A-AAATGAAAGTTTTCT
232198 AAAATG
1 AAAATG
232204 GAAGCTTGTT
Statistics
Matches: 66, Mismatches: 18, Indels: 13
0.68 0.19 0.13
Matches are distributed among these distances:
16 24 0.36
17 24 0.36
18 17 0.26
19 1 0.02
ACGTcount: A:0.50, C:0.06, G:0.12, T:0.32
Consensus pattern (16 bp):
AAAATGAAAGTTTTCT
Found at i:232116 original size:17 final size:17
Alignment explanation
Indices: 232096--232201 Score: 90
Period size: 17 Copynumber: 6.2 Consensus size: 17
232086 GAAAATGACG
232096 AAAAATGAAAGTTTTCT
1 AAAAATGAAAGTTTTCT
* *
232113 AAAAATTAAAG-TTTCC
1 AAAAATGAAAGTTTTCT
** *
232129 AAAAATGAAAAATTACT
1 AAAAATGAAAGTTTTCT
* *
232146 AAAAATAATAAGTTTTCA
1 AAAAATGA-AAGTTTTCT
232164 AAAAATAGAAAGTTTT-T
1 AAAAAT-GAAAGTTTTCT
** *
232181 AGGAATGGAAGTTTTCT
1 AAAAATGAAAGTTTTCT
232198 AAAA
1 AAAA
232202 TGGAAGCTTG
Statistics
Matches: 67, Mismatches: 18, Indels: 8
0.72 0.19 0.09
Matches are distributed among these distances:
16 21 0.31
17 27 0.40
18 18 0.27
19 1 0.01
ACGTcount: A:0.52, C:0.06, G:0.11, T:0.31
Consensus pattern (17 bp):
AAAAATGAAAGTTTTCT
Found at i:239112 original size:27 final size:26
Alignment explanation
Indices: 239079--239163 Score: 80
Period size: 27 Copynumber: 3.1 Consensus size: 26
239069 TATTAAATAA
*
239079 TAAAATTAAATAATAGTTAAAAGTTAT
1 TAAAATTAAATAATA-TTAAAAATTAT
* *
239106 TAAAATTATATTCATATTAAAAATTAT
1 TAAAATTA-AATAATATTAAAAATTAT
* * *
239133 TTAAATTATATAATACTAAAAAATATAT
1 TAAAATTAAATAATA-TTAAAAAT-TAT
239161 TAA
1 TAA
239164 TTTTTTAATA
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
26 4 0.09
27 32 0.70
28 10 0.22
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (26 bp):
TAAAATTAAATAATATTAAAAATTAT
Found at i:239165 original size:26 final size:26
Alignment explanation
Indices: 239109--239189 Score: 76
Period size: 26 Copynumber: 3.1 Consensus size: 26
239099 AAGTTATTAA
* *
239109 AATTATATTCATATTAAAAATTAT-TT
1 AATTATA-TAATATTAAAAAATATATT
*
239135 AAATTATATAATACTAAAAAATATATT
1 -AATTATATAATATTAAAAAATATATT
* * *
239162 AATTTTTTAATATTAAATAATA-ATT
1 AATTATATAATATTAAAAAATATATT
239187 AAT
1 AAT
239190 ATTATATTTA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
25 6 0.13
26 31 0.67
27 9 0.20
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (26 bp):
AATTATATAATATTAAAAAATATATT
Found at i:252805 original size:791 final size:791
Alignment explanation
Indices: 251284--252867 Score: 3168
Period size: 791 Copynumber: 2.0 Consensus size: 791
251274 AATGGCATGT
251284 ATTTCTAGACTTCATACATGCTACGTTCAGTCTGAAAACCGACTAAATCGTAGCTCTGATACCAC
1 ATTTCTAGACTTCATACATGCTACGTTCAGTCTGAAAACCGACTAAATCGTAGCTCTGATACCAC
251349 TAAATTTAACACCCTTAACCCGTATCCATCATTAAAATAAGGTTACAGACCAATACCATACAAAT
66 TAAATTTAACACCCTTAACCCGTATCCATCATTAAAATAAGGTTACAGACCAATACCATACAAAT
251414 AAAACATTTAAAAATAAATAAATACATTATCATAATCATATCATAAACCAATCATCCACATACAT
131 AAAACATTTAAAAATAAATAAATACATTATCATAATCATATCATAAACCAATCATCCACATACAT
251479 ATAGTCCCTAAATCGAGCCCTCGATGCCCTAGAAAAAACTTAGAAACAATTCAGGACTAAATTGA
196 ATAGTCCCTAAATCGAGCCCTCGATGCCCTAGAAAAAACTTAGAAACAATTCAGGACTAAATTGA
251544 AAATATATTGAAAGTCTAGGAAAAAGTTACAAAAATTTGGTTACATGGGTCACACGATCGTGTGG
261 AAATATATTGAAAGTCTAGGAAAAAGTTACAAAAATTTGGTTACATGGGTCACACGATCGTGTGG
251609 CCAGGCCGTGTGCCTCACACGGCTAAGGCACACGCCCAAGACACACGCCCATGTCTTAGGTCGTG
326 CCAGGCCGTGTGCCTCACACGGCTAAGGCACACGCCCAAGACACACGCCCATGTCTTAGGTCGTG
251674 TGCCTCACACGGTTGAGGCACACACCTGTGTCTCAGGTCGTGTAACCTTCGAACTAGGGACACAT
391 TGCCTCACACGGTTGAGGCACACACCTGTGTCTCAGGTCGTGTAACCTTCGAACTAGGGACACAT
251739 GATTGTGTCCCAGCCCGTGTCCTCACCCGTGTAACTCTCTAAGTAGGGTCACACTGCCGTATCAC
456 GATTGTGTCCCAGCCCGTGTCCTCACCCGTGTAACTCTCTAAGTAGGGTCACACTGCCGTATCAC
251804 ACGTCCGTGTGCCAGGCCGTGTAACTCTCAAAATTTCCCCACACGCTTGTGTGACAAGCCGTGTG
521 ACGTCCGTGTGCCAGGCCGTGTAACTCTCAAAATTTCCCCACACGCTTGTGTGACAAGCCGTGTG
251869 CAAGGCTGTGTAACTCACTGACTTGCATGCAAAGGAAGCTTCAGATGACACACAGTCGTGTTGCC
586 CAAGGCTGTGTAACTCACTGACTTGCATGCAAAGGAAGCTTCAGATGACACACAGTCGTGTTGCC
251934 AGGCTGTGTGTCACACATAGCTGAGTTACACGCCCGTGTCTCAAGCCGTGTGGACATAAATTTGC
651 AGGCTGTGTGTCACACATAGCTGAGTTACACGCCCGTGTCTCAAGCCGTGTGGACATAAATTTGC
251999 CTAAATTCAAACCATTTCCTATACCACTTCATGCATTAACCTTTCAGTCTTTTGTGCATATAATC
716 CTAAATTCAAACCATTTCCTATACCACTTCATGCATTAACCTTTCAGTCTTTTGTGCATATAATC
252064 AAGGCATCAAG
781 AAGGCATCAAG
252075 ATTTCTAGACTTCATACATGCTACGTTCAGTCTGAAAACCGACTAAATCGTAGCTCTGATACCAC
1 ATTTCTAGACTTCATACATGCTACGTTCAGTCTGAAAACCGACTAAATCGTAGCTCTGATACCAC
252140 TAAATTTAACACCCTTAACCCGTATCCATCATTAAAATAAGGTTACAGACCAATACCATACAAAT
66 TAAATTTAACACCCTTAACCCGTATCCATCATTAAAATAAGGTTACAGACCAATACCATACAAAT
252205 AAAACATTTAAAAATAAATAAATACATTATCATAATCATATCATAAACCAATCATCCACATACAT
131 AAAACATTTAAAAATAAATAAATACATTATCATAATCATATCATAAACCAATCATCCACATACAT
252270 ATAGTCCCTAAATCGAGCCCTCGATGCCCTAGAAAAAACTTAGAAACAATTCAGGACTAAATTGA
196 ATAGTCCCTAAATCGAGCCCTCGATGCCCTAGAAAAAACTTAGAAACAATTCAGGACTAAATTGA
252335 AAATATATTGAAAGTCTAGGAAAAAGTTACAAAAATTTGGTTACATGGGTCACACGATCGTGTGG
261 AAATATATTGAAAGTCTAGGAAAAAGTTACAAAAATTTGGTTACATGGGTCACACGATCGTGTGG
252400 CCAGGCCGTGTGCCTCACACGGCTAAGGCACACGCCCAAGACACACGCCCATGTCTTAGGTCGTG
326 CCAGGCCGTGTGCCTCACACGGCTAAGGCACACGCCCAAGACACACGCCCATGTCTTAGGTCGTG
252465 TGCCTCACACGGTTGAGGCACACACCTGTGTCTCAGGTCGTGTAACCTTCGAACTAGGGACACAT
391 TGCCTCACACGGTTGAGGCACACACCTGTGTCTCAGGTCGTGTAACCTTCGAACTAGGGACACAT
252530 GATTGTGTCCCAGCCCGTGTCCTCACCCGTGTAACTCTCTAAGTAGGGTCACACTGCCGTATCAC
456 GATTGTGTCCCAGCCCGTGTCCTCACCCGTGTAACTCTCTAAGTAGGGTCACACTGCCGTATCAC
252595 ACGTCCGTGTGCCAGGCCGTGTAACTCTCAAAATTTCCCCACACGCTTGTGTGACAAGCCGTGTG
521 ACGTCCGTGTGCCAGGCCGTGTAACTCTCAAAATTTCCCCACACGCTTGTGTGACAAGCCGTGTG
252660 CAAGGCTGTGTAACTCACTGACTTGCATGCAAAGGAAGCTTCAGATGACACACAGTCGTGTTGCC
586 CAAGGCTGTGTAACTCACTGACTTGCATGCAAAGGAAGCTTCAGATGACACACAGTCGTGTTGCC
252725 AGGCTGTGTGTCACACATAGCTGAGTTACACGCCCGTGTCTCAAGCCGTGTGGACATAAATTTGC
651 AGGCTGTGTGTCACACATAGCTGAGTTACACGCCCGTGTCTCAAGCCGTGTGGACATAAATTTGC
252790 CTAAATTCAAACCATTTCCTATACCACTTCATGCATTAACCTTTCAGTCTTTTGTGCATATAATC
716 CTAAATTCAAACCATTTCCTATACCACTTCATGCATTAACCTTTCAGTCTTTTGTGCATATAATC
252855 AAGGCATCAAG
781 AAGGCATCAAG
252866 AT
1 AT
252868 CATATCAAAA
Statistics
Matches: 793, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
791 793 1.00
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.26
Consensus pattern (791 bp):
ATTTCTAGACTTCATACATGCTACGTTCAGTCTGAAAACCGACTAAATCGTAGCTCTGATACCAC
TAAATTTAACACCCTTAACCCGTATCCATCATTAAAATAAGGTTACAGACCAATACCATACAAAT
AAAACATTTAAAAATAAATAAATACATTATCATAATCATATCATAAACCAATCATCCACATACAT
ATAGTCCCTAAATCGAGCCCTCGATGCCCTAGAAAAAACTTAGAAACAATTCAGGACTAAATTGA
AAATATATTGAAAGTCTAGGAAAAAGTTACAAAAATTTGGTTACATGGGTCACACGATCGTGTGG
CCAGGCCGTGTGCCTCACACGGCTAAGGCACACGCCCAAGACACACGCCCATGTCTTAGGTCGTG
TGCCTCACACGGTTGAGGCACACACCTGTGTCTCAGGTCGTGTAACCTTCGAACTAGGGACACAT
GATTGTGTCCCAGCCCGTGTCCTCACCCGTGTAACTCTCTAAGTAGGGTCACACTGCCGTATCAC
ACGTCCGTGTGCCAGGCCGTGTAACTCTCAAAATTTCCCCACACGCTTGTGTGACAAGCCGTGTG
CAAGGCTGTGTAACTCACTGACTTGCATGCAAAGGAAGCTTCAGATGACACACAGTCGTGTTGCC
AGGCTGTGTGTCACACATAGCTGAGTTACACGCCCGTGTCTCAAGCCGTGTGGACATAAATTTGC
CTAAATTCAAACCATTTCCTATACCACTTCATGCATTAACCTTTCAGTCTTTTGTGCATATAATC
AAGGCATCAAG
Found at i:261772 original size:56 final size:53
Alignment explanation
Indices: 261641--261800 Score: 159
Period size: 50 Copynumber: 3.0 Consensus size: 53
261631 CTTATATCGG
* * * **
261641 TGCCCATGCCATGTCCCAGTCATGGTCTTACGGGGGACCTCTCAT---CTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATAACCTCAA
* * *
261691 TGCCAACGCCATGTCCCTGAGATGGTCTTACGTGGGACCTCTCATAACCTCAATAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATAACCTC---AA
* *
261747 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA--TCTCATCAACCTTAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCAT-AACCTCAA
261799 TG
1 TG
261801 TCATGACATT
Statistics
Matches: 90, Mismatches: 13, Indels: 12
0.78 0.11 0.10
Matches are distributed among these distances:
50 39 0.43
52 4 0.04
53 3 0.03
54 6 0.07
55 5 0.06
56 33 0.37
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (53 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATAACCTCAA
Found at i:268357 original size:27 final size:27
Alignment explanation
Indices: 268327--268383 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
268317 TTTGCACATG
*
268327 ATAGCCTTTGTAGACACACTCTCAAGC
1 ATAGCCTCTGTAGACACACTCTCAAGC
*
268354 ATAGCCTCTGTAGACACACTCTCGAGC
1 ATAGCCTCTGTAGACACACTCTCAAGC
268381 ATA
1 ATA
268384 CTTGCTGAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.30, C:0.30, G:0.16, T:0.25
Consensus pattern (27 bp):
ATAGCCTCTGTAGACACACTCTCAAGC
Found at i:280358 original size:55 final size:56
Alignment explanation
Indices: 280308--280418 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 56
280298 TTTAATAGGA
*
280308 TTATTATCAAATATAATTT-AATAAAAATAAATAATTTAATCATATTTTAATAAAT
1 TTATTATCAAATATAATTTAAATAAAAATAAATAATTTAATAATATTTTAATAAAT
* * *
280363 TTATTATTAAATATAATTTAACAATAATAATATATAATTTAATAATATTCTTAATA
1 TTATTATCAAATATAATTT-A-AATAAAAATAAATAATTTAATAATATT-TTAATA
280419 TAACAATTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
55 18 0.38
58 24 0.50
59 6 0.12
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (56 bp):
TTATTATCAAATATAATTTAAATAAAAATAAATAATTTAATAATATTTTAATAAAT
Found at i:280401 original size:58 final size:58
Alignment explanation
Indices: 280307--280460 Score: 165
Period size: 60 Copynumber: 2.7 Consensus size: 58
280297 TTTTAATAGG
* * * *
280307 ATTATTATCAAATATAATTT--AATAAAAATAAATAATTTAATCATATT-TTAATA-A
1 ATTATTATTAAATATAATTTAAAATAATAATATATAATTTAATAATATTCTTAATATA
280361 ATTTATTATTAAATATAATTTAACAATAATAATATATAATTTAATAATATTCTTAATATA
1 A-TTATTATTAAATATAATTTAA-AATAATAATATATAATTTAATAATATTCTTAATATA
** *
280421 ACAATTATTAAAATATGAA-TTAATAAAAATAATATATAAT
1 ATTATTATT-AAATAT-AATTTAA-AATAATAATATATAAT
280461 ATTACAAAAA
Statistics
Matches: 84, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
54 1 0.01
55 18 0.21
58 24 0.29
59 12 0.14
60 27 0.32
61 2 0.02
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (58 bp):
ATTATTATTAAATATAATTTAAAATAATAATATATAATTTAATAATATTCTTAATATA
Found at i:280607 original size:12 final size:12
Alignment explanation
Indices: 280577--280611 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
280567 TATATATTAC
280577 TTAAAGAATAAT
1 TTAAAGAATAAT
*
280589 TTAAAAGAGTAAT
1 TT-AAAGAATAAT
280602 TTAAAGAATA
1 TTAAAGAATA
280612 TCTTGTCTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.31
Consensus pattern (12 bp):
TTAAAGAATAAT
Found at i:284002 original size:50 final size:50
Alignment explanation
Indices: 283943--284051 Score: 130
Period size: 50 Copynumber: 2.2 Consensus size: 50
283933 AAGGTGGAAG
** * * *
283943 TAAGTGGCAGTATATTTGCATATCAGTGATGGTTGGT-CTATAAAGTGTTA
1 TAAGTGGCAGTATACCTACATACCAGTGATGGTTGGTGC-ACAAAGTGTTA
* *
283993 TAAGTGGCAGTATACCTACATACCAGTGGTGGTTTGTGCACAAAGTGTTA
1 TAAGTGGCAGTATACCTACATACCAGTGATGGTTGGTGCACAAAGTGTTA
*
284043 TCAGTGGCA
1 TAAGTGGCA
284052 ATTTATCTGT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
50 49 0.98
51 1 0.02
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.33
Consensus pattern (50 bp):
TAAGTGGCAGTATACCTACATACCAGTGATGGTTGGTGCACAAAGTGTTA
Found at i:289439 original size:50 final size:50
Alignment explanation
Indices: 289380--289488 Score: 130
Period size: 50 Copynumber: 2.2 Consensus size: 50
289370 AAGGTGGAAG
** * * *
289380 TAAGTGGCAGTATATTTGCATATCAGTGATGGTTGGT-CTATAAAGTGTTA
1 TAAGTGGCAGTATACCTACATACCAGTGATGGTTGGTGC-ACAAAGTGTTA
* *
289430 TAAGTGGCAGTATACCTACATACCAGTGGTGGTTTGTGCACAAAGTGTTA
1 TAAGTGGCAGTATACCTACATACCAGTGATGGTTGGTGCACAAAGTGTTA
*
289480 TCAGTGGCA
1 TAAGTGGCA
289489 ATTTATCTGT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
50 49 0.98
51 1 0.02
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.33
Consensus pattern (50 bp):
TAAGTGGCAGTATACCTACATACCAGTGATGGTTGGTGCACAAAGTGTTA
Found at i:296077 original size:12 final size:12
Alignment explanation
Indices: 296052--296090 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
296042 ACTCGCTTCT
* *
296052 TTACTTACTCAC
1 TTACTTGCTTAC
*
296064 TTACTTGTTTAC
1 TTACTTGCTTAC
296076 TTACTTGCTTAC
1 TTACTTGCTTAC
296088 TTA
1 TTA
296091 AATAACTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:296407 original size:50 final size:50
Alignment explanation
Indices: 296339--296474 Score: 161
Period size: 49 Copynumber: 2.7 Consensus size: 50
296329 TTTTATGTAC
* * * ** *
296339 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTCATAC-CGG
1 TGCCTATGTCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-CTCAG
*
296389 TGCCTATGTCATGTCCCAGACATGGTCTTAC-GGGGACCTCTCATCTCAG
1 TGCCTATGTCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
*
296438 TG-CTAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCT-ATGTCATGTCCCAGACATGGTCTTACATGGGA
296475 TCTCATTCCC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
48 3 0.04
49 39 0.53
50 32 0.43
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (50 bp):
TGCCTATGTCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
Found at i:298816 original size:24 final size:25
Alignment explanation
Indices: 298785--298835 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
298775 GACCCTGTTT
*
298785 TGTG-TTTTCCTAGTTGATTGAAAG
1 TGTGTTTTTCCTAGTTGATTCAAAG
298809 TGTGTTTTTTCCTAGTTGATTCAAAG
1 TGTG-TTTTTCCTAGTTGATTCAAAG
298835 T
1 T
298836 TTGCAATTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 4 0.17
26 20 0.83
ACGTcount: A:0.20, C:0.10, G:0.22, T:0.49
Consensus pattern (25 bp):
TGTGTTTTTCCTAGTTGATTCAAAG
Found at i:300991 original size:12 final size:12
Alignment explanation
Indices: 300971--301002 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
300961 AATTCAACAT
*
300971 CTAAGCATTCAA
1 CTAAACATTCAA
300983 CTAAACATTCAA
1 CTAAACATTCAA
300995 CTAAACAT
1 CTAAACAT
301003 CAAACACAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.47, C:0.25, G:0.03, T:0.25
Consensus pattern (12 bp):
CTAAACATTCAA
Found at i:305827 original size:22 final size:23
Alignment explanation
Indices: 305802--305852 Score: 75
Period size: 25 Copynumber: 2.1 Consensus size: 23
305792 TTTTTCAATA
305802 TTTTCATTTAAAAATATTATTTT
1 TTTTCATTTAAAAATATTATTTT
*
305825 TTTAATTATTTAAAAATATTATTTT
1 TTT--TCATTTAAAAATATTATTTT
305850 TTT
1 TTT
305853 ACTTCTCTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 3 0.12
25 22 0.88
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (23 bp):
TTTTCATTTAAAAATATTATTTT
Found at i:310617 original size:42 final size:44
Alignment explanation
Indices: 310541--310628 Score: 117
Period size: 42 Copynumber: 2.0 Consensus size: 44
310531 TTCACATCTC
*
310541 ATTTCATCATTTCATATCGCATTTCTAATATTGGCCAATTCAAT
1 ATTTCATCATCTCATATCGCATTTCTAATATTGGCCAATTCAAT
* * * *
310585 ATTT-ATCATCTCATAT-TCATTTCTCATCTTGGCCATTTCAAT
1 ATTTCATCATCTCATATCGCATTTCTAATATTGGCCAATTCAAT
310627 AT
1 AT
310629 CAATCACATA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 24 0.62
43 11 0.28
44 4 0.10
ACGTcount: A:0.27, C:0.22, G:0.06, T:0.45
Consensus pattern (44 bp):
ATTTCATCATCTCATATCGCATTTCTAATATTGGCCAATTCAAT
Found at i:313159 original size:18 final size:18
Alignment explanation
Indices: 313136--313172 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
313126 AATCTGTAAG
313136 GGGGAATGATTTTAGGTT
1 GGGGAATGATTTTAGGTT
313154 GGGGAATGATTTTAGGTT
1 GGGGAATGATTTTAGGTT
313172 G
1 G
313173 TATTTTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.38
Consensus pattern (18 bp):
GGGGAATGATTTTAGGTT
Found at i:326195 original size:19 final size:19
Alignment explanation
Indices: 326171--326209 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
326161 AAATGAAAAT
326171 ATAGAATTTTGGTCTTCCA
1 ATAGAATTTTGGTCTTCCA
326190 ATAGAATTTTGGTCTTCCA
1 ATAGAATTTTGGTCTTCCA
326209 A
1 A
326210 ATTCCCACCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.41
Consensus pattern (19 bp):
ATAGAATTTTGGTCTTCCA
Found at i:330158 original size:24 final size:24
Alignment explanation
Indices: 330131--330181 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
330121 CAGTCTATCT
330131 TCCCTTCCGCTCATACTCTCAAAA
1 TCCCTTCCGCTCATACTCTCAAAA
* *
330155 TCCCTTCCTCTCATACTCTCAATA
1 TCCCTTCCGCTCATACTCTCAAAA
330179 TCC
1 TCC
330182 ACTTTTATCC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.22, C:0.43, G:0.02, T:0.33
Consensus pattern (24 bp):
TCCCTTCCGCTCATACTCTCAAAA
Found at i:341632 original size:2 final size:2
Alignment explanation
Indices: 341625--341657 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
341615 CTTTTACCCA
341625 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
341658 GTATATATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:347797 original size:35 final size:35
Alignment explanation
Indices: 347742--347812 Score: 99
Period size: 35 Copynumber: 2.0 Consensus size: 35
347732 TGTGGTTCAG
* *
347742 AACATTATATATATAAATGGTAAAAAA-ATAATAA
1 AACATTAAATATAAAAATGGTAAAAAATATAATAA
347776 AACATTAAATATTAAAAATGGTAAAAAATTATAATAA
1 AACATTAAATA-TAAAAATGGTAAAAAA-TATAATAA
347813 TTCTAAAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
34 10 0.31
35 15 0.47
37 7 0.22
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.30
Consensus pattern (35 bp):
AACATTAAATATAAAAATGGTAAAAAATATAATAA
Found at i:347829 original size:27 final size:27
Alignment explanation
Indices: 347799--347893 Score: 79
Period size: 27 Copynumber: 3.5 Consensus size: 27
347789 AAAAATGGTA
*
347799 AAAAATTATAATAATTC-TAAAAAAATT
1 AAAAATTATAA-AAATCATAAAAAAATT
*
347826 AAAATTTATAAAAATCATAAAAAAA-T
1 AAAAATTATAAAAATCATAAAAAAATT
* * * **
347852 AAGAGTTTTAAAAAT-ATTTAAAAATT
1 AAAAATTATAAAAATCATAAAAAAATT
347878 ATAAAATTATTAAAAA
1 A-AAAATTA-TAAAAA
347894 ATTGTAAAAA
Statistics
Matches: 54, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
25 7 0.13
26 19 0.35
27 22 0.41
28 6 0.11
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (27 bp):
AAAAATTATAAAAATCATAAAAAAATT
Found at i:347846 original size:18 final size:18
Alignment explanation
Indices: 347797--347847 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 18
347787 TTAAAAATGG
*
347797 TAAAAAATTATAATAATTC
1 TAAAAAAATATAA-AATTC
347816 TAAAAAAAT-TAAAATT-
1 TAAAAAAATATAAAATTC
*
347832 TATAAAAATCATAAAA
1 TAAAAAAAT-ATAAAA
347848 AAATAAGAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
16 8 0.29
17 4 0.14
18 8 0.29
19 8 0.29
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (18 bp):
TAAAAAAATATAAAATTC
Found at i:347888 original size:19 final size:19
Alignment explanation
Indices: 347797--347903 Score: 64
Period size: 19 Copynumber: 5.8 Consensus size: 19
347787 TTAAAAATGG
*
347797 TAAAAAATTATAATAAT-T
1 TAAAAAATTATAAAAATAT
*
347815 CTAAAAAA--ATTAAAAT-T
1 -TAAAAAATTATAAAAATAT
* *
347832 TATAAAAATCATAAAAA-AA
1 TA-AAAAATTATAAAAATAT
* * *
347851 T-AAGAGTTTTAAAAATAT
1 TAAAAAATTATAAAAATAT
* *
347869 TTAAAAATTATAAAATTAT
1 TAAAAAATTATAAAAATAT
*
347888 TAAAAAATTGTAAAAA
1 TAAAAAATTATAAAAA
347904 GATGAAAATA
Statistics
Matches: 66, Mismatches: 16, Indels: 12
0.70 0.17 0.13
Matches are distributed among these distances:
16 2 0.03
17 22 0.33
18 2 0.03
19 40 0.61
ACGTcount: A:0.63, C:0.02, G:0.03, T:0.33
Consensus pattern (19 bp):
TAAAAAATTATAAAAATAT
Found at i:348227 original size:24 final size:23
Alignment explanation
Indices: 348192--348236 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
348182 TATCAAATTT
348192 TATTTTAGTCATCATAATGTGTGA
1 TATTTTAGTCAT-ATAATGTGTGA
*
348216 TATTTT-GATCATATTATGTGT
1 TATTTTAG-TCATATAATGTGT
348237 AATTGACTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.27, C:0.07, G:0.16, T:0.51
Consensus pattern (23 bp):
TATTTTAGTCATATAATGTGTGA
Found at i:348269 original size:10 final size:10
Alignment explanation
Indices: 348256--348338 Score: 51
Period size: 9 Copynumber: 9.1 Consensus size: 10
348246 TTTTGACAAT
348256 TTTTTAATAA
1 TTTTTAATAA
348266 -TTTT--TAA
1 TTTTTAATAA
348273 TTTTTAAT-A
1 TTTTTAATAA
*
348282 TTTTTACCT--
1 TTTTTA-ATAA
*
348291 TTTTAAATAA
1 TTTTTAATAA
348301 -TTTT-ATAA
1 TTTTTAATAA
*
348309 TTATTT-ACAA
1 TT-TTTAATAA
348319 TTTTTAATAA
1 TTTTTAATAA
348329 TTTTT-ATAA
1 TTTTTAATAA
348338 T
1 T
348339 ATTCTAAACC
Statistics
Matches: 58, Mismatches: 6, Indels: 19
0.70 0.07 0.23
Matches are distributed among these distances:
7 3 0.05
8 9 0.16
9 28 0.48
10 18 0.31
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:348276 original size:18 final size:18
Alignment explanation
Indices: 348253--348326 Score: 73
Period size: 18 Copynumber: 4.2 Consensus size: 18
348243 CTATTTTGAC
348253 AATTTTTTAATAATTTTT
1 AATTTTTTAATAATTTTT
348271 AA-TTTTTAAT-ATTTTT
1 AATTTTTTAATAATTTTT
* *
348287 ACCTTTTTAAATAATTTTAT
1 A-ATTTTTTAATAATTTT-T
* *
348307 AATTATTT-ACAATTTTT
1 AATTTTTTAATAATTTTT
348324 AAT
1 AAT
348327 AATTTTTATA
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
16 7 0.15
17 12 0.26
18 16 0.35
19 9 0.20
20 2 0.04
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (18 bp):
AATTTTTTAATAATTTTT
Found at i:348278 original size:17 final size:17
Alignment explanation
Indices: 348256--348326 Score: 74
Period size: 17 Copynumber: 4.1 Consensus size: 17
348246 TTTTGACAAT
348256 TTTTTAATAATTTTTAA
1 TTTTTAATAATTTTTAA
*
348273 TTTTTAAT-ATTTTTACC
1 TTTTTAATAATTTTTA-A
348290 TTTTTAAATAATTTTATAA
1 TTTTT-AATAATTTT-TAA
*
348309 TTATTT-ACAATTTTTAA
1 TT-TTTAATAATTTTTAA
348326 T
1 T
348327 AATTTTTATA
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
16 7 0.15
17 17 0.37
18 10 0.22
19 7 0.15
20 5 0.11
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTTTAATAATTTTTAA
Found at i:348301 original size:28 final size:27
Alignment explanation
Indices: 348270--348334 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 27
348260 TAATAATTTT
* *
348270 TAATTTTTAATATTTTTAC-CTTTTTAAA
1 TAATTTTTAAT-TATTTACAATTTTT-AA
348298 TAATTTTATAATTATTTACAATTTTTAA
1 TAATTTT-TAATTATTTACAATTTTTAA
348326 TAATTTTTA
1 TAATTTTTA
348335 TAATATTCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
27 2 0.06
28 22 0.67
29 9 0.27
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (27 bp):
TAATTTTTAATTATTTACAATTTTTAA
Done.