Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3547

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 435

Length: 725
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34


Found at i:682 original size:44 final size:44

Alignment explanation


    Indices: 616--701  Score: 100
    Period size: 44  Copynumber: 2.0  Consensus size: 44

        606 CTGTAACCAC

                  *         **                          
        616 AGGGAGGTAAAATCCGCCATCTTCGATCTACTCCACTATTGCTT
          1 AGGGAGATAAAATCCGAAATCTTCGATCTACTCCACTATTGCTT

                          *        **     *      *    
        660 AGGGAGATAAAATCTGAAATCTTTTATCTATTCCACTGTTGC
          1 AGGGAGATAAAATCCGAAATCTTCGATCTACTCCACTATTGC

        702 CCAGGGAAGT


Statistics
Matches: 34,  Mismatches: 8, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  44   34  1.00

ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33


Consensus pattern (44 bp):   
AGGGAGATAAAATCCGAAATCTTCGATCTACTCCACTATTGCTT
Done.