genome.fa.s1930.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold488
Parameters: 2 7 7 80 10 50 1000
Length:  153219

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
720--754	15	2.4	15	90	4	54	48	0	8	42	1.33
779--826	10	4.9	10	76	2	53	25	6	2	66	1.26
2678--3356	168	4.0	168	90	0	1045	12	23	18	45	1.83
5649--5698	24	2.1	24	96	0	91	28	26	24	22	1.99
7514--7541	2	14.0	2	100	0	56	50	0	0	50	1.00
7913--7937	12	2.1	12	100	0	50	52	8	0	40	1.31
13570--13638	24	2.9	23	79	14	70	52	1	4	42	1.30
15294--15405	25	4.5	25	74	5	93	23	20	23	33	1.98
26009--26128	64	1.9	64	87	0	177	21	20	24	33	1.97
28179--28217	20	2.0	20	89	0	60	33	5	12	48	1.63
28452--28546	25	3.8	25	87	2	129	23	24	25	27	2.00
31133--31289	46	3.4	46	83	1	172	29	19	21	29	1.97
34437--34483	25	1.9	25	86	4	69	19	23	17	40	1.91
36161--36288	43	3.0	43	83	1	141	44	18	21	14	1.86
37313--37561	44	5.7	43	84	8	308	39	19	18	22	1.92
37305--37584	44	6.6	39	81	10	236	40	19	18	21	1.92
37306--37577	45	6.2	45	85	5	326	40	19	18	21	1.91
37305--37584	84	3.3	84	85	5	382	40	19	18	21	1.92
37401--37526	39	3.2	36	81	16	114	39	19	19	20	1.92
37777--37863	40	2.2	40	83	8	106	42	20	6	29	1.78
44403--44483	40	2.0	41	88	7	121	25	20	23	29	1.99
54902--54982	40	2.0	41	86	11	114	24	20	24	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55698--55744	15	3.0	16	79	14	62	48	0	17	34	1.47
56203--57025	415	2.0	415	86	0	1146	31	11	18	39	1.85
62500--62540	20	2.1	20	90	4	66	19	7	4	68	1.32
62479--62546	11	6.4	11	71	6	50	19	8	4	67	1.35
62707--62748	18	2.3	18	88	8	59	33	4	2	59	1.31
71093--71363	25	10.8	25	77	6	136	32	18	28	20	1.96
71229--71310	27	3.1	26	78	16	89	37	19	26	15	1.92
71229--71367	52	2.7	52	79	8	142	36	17	28	17	1.93
71297--71373	25	3.1	24	85	7	100	33	14	33	18	1.91
75352--75553	98	2.1	99	99	0	397	41	10	7	40	1.69
98450--98504	26	2.2	25	90	3	83	63	0	1	34	1.05
107750--107945	98	2.0	98	97	0	374	37	21	14	26	1.92
113216--113272	30	1.9	30	96	0	105	49	21	5	24	1.70
114571--114634	31	2.1	31	90	0	101	51	10	15	21	1.74
120671--120705	18	2.0	17	88	5	52	54	0	0	45	0.99
122501--122759	129	2.0	129	96	2	484	42	11	20	25	1.86
125811--125844	15	2.3	15	89	0	50	35	5	0	58	1.22
130646--130679	16	2.1	17	88	5	52	50	0	2	47	1.16
132037--132075	17	2.2	18	90	4	62	48	5	2	43	1.38
137498--137529	16	2.1	16	88	11	50	37	0	0	62	0.95
139691--139968	138	2.0	139	97	2	524	29	17	24	27	1.98
146224--146988	408	1.9	408	100	0	1530	27	12	14	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151216--151258	22	2.0	22	85	0	59	11	16	27	44	1.82
151321--151545	43	5.2	43	90	2	299	29	32	17	20	1.96

Tables:   1

The End!