Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold541
Parameters: 2 7 7 80 10 50 1000
Length:  74348

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1851--1973
9
13.4
9
73
17
62
64
4
2
29
1.25
9474--9516
23
1.9
22
86
13
61
32
9
6
51
1.61
14757--14790
17
2.0
17
88
11
52
35
0
0
64
0.94
17368--17413
23
2.0
23
95
0
83
17
19
21
41
1.90
22177--22209
16
2.0
17
88
5
50
45
30
6
18
1.73
25207--25233
7
3.9
7
100
0
54
44
0
0
55
0.99
30311--30358
24
2.0
24
100
0
96
45
12
8
33
1.72
32167--32208
16
2.6
17
85
7
52
54
0
0
45
0.99
32144--32261
60
2.0
61
91
1
193
43
0
0
55
1.05
32364--32405
16
2.7
15
85
10
57
35
11
0
52
1.38
38698--38735
16
2.4
16
90
0
67
71
0
28
0
0.87
39425--39467
17
2.6
17
82
14
54
39
0
2
58
1.11
39429--39477
26
1.9
25
83
4
62
34
0
4
61
1.15
41167--41209
17
2.6
17
82
14
54
39
0
2
58
1.11
41171--41219
26
1.9
25
83
4
62
34
0
4
61
1.15
42229--42351
9
13.4
9
74
17
62
29
2
4
64
1.25
42619--42664
17
2.7
18
80
10
60
26
0
4
69
1.07
42337--42924
307
1.9
307
93
0
1005
36
13
10
39
1.79
43205--43257
28
2.0
26
85
7
70
32
5
0
62
1.19
47888--48026
18
7.7
18
76
0
107
20
42
2
34
1.65
47879--48027
42
3.4
42
73
10
136
20
42
2
34
1.66
47903--48026
24
5.4
24
73
11
107
20
41
1
35
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47900--48026
6
21.2
6
76
0
92
21
42
1
34
1.62
48345--48370
5
5.2
5
100
0
52
0
19
0
80
0.71
48866--48915
26
1.9
26
83
0
64
34
0
4
62
1.14
50556--50630
21
3.7
20
66
16
55
36
4
4
56
1.37
52826--52982
39
4.0
39
82
3
183
22
34
6
36
1.80
55372--55409
13
2.9
13
88
0
58
36
23
10
28
1.88
59401--59435
16
2.1
17
89
5
54
62
2
0
34
1.10
61850--61964
24
4.5
24
70
12
86
18
40
1
40
1.61
61896--61987
6
15.3
6
78
8
73
20
44
0
34
1.52
69861--69925
5
13.2
5
81
15
82
38
0
1
60
1.07

Tables:   1

The End!