genome.fa.s194.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold438
Parameters: 2 7 7 80 10 50 1000
Length:  246752

Tables:   1   

This is table  1  of  1  ( 95 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187--1273	542	2.0	542	95	0	1931	38	13	17	30	1.89
6045--6177	40	3.3	40	88	4	196	30	17	21	30	1.96
6233--6351	40	3.0	41	85	3	170	31	15	21	31	1.95
6060--6411	175	2.0	175	93	1	607	29	17	20	32	1.96
10975--11031	28	2.0	28	100	0	114	28	7	24	40	1.81
11840--11898	29	2.0	29	100	0	118	27	16	16	38	1.91
17769--18059	50	5.7	50	82	6	316	26	23	27	22	1.99
20311--20386	37	2.1	37	82	9	93	42	1	2	53	1.23
20334--20414	32	2.5	32	82	4	92	44	2	2	50	1.28
22954--22983	15	2.0	15	93	0	51	70	0	10	20	1.16
23855--23896	20	2.1	20	91	8	68	71	0	21	7	1.09
25733--25806	32	2.3	33	81	9	89	27	10	5	56	1.55
25838--25959	50	2.4	50	83	5	165	33	14	13	37	1.86
26992--27021	15	1.9	16	93	6	53	43	16	13	26	1.85
28794--28839	3	15.3	3	100	0	92	32	0	0	67	0.91
31297--31339	21	1.9	24	86	13	65	55	9	0	34	1.32
32064--32100	10	3.8	10	89	3	58	48	0	0	51	1.00
32064--32125	19	3.2	20	84	8	74	56	0	1	41	1.09
32159--32571	206	2.0	207	99	0	819	40	5	15	38	1.69
32826--32948	37	3.2	36	77	13	122	35	4	1	58	1.27
34075--34181	50	2.1	50	89	0	160	32	24	15	27	1.96
34101--34182	25	3.3	25	68	13	69	30	24	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34125--34334	76	2.8	76	84	0	267	33	24	13	28	1.94
39476--39537	23	2.7	23	72	18	65	45	22	16	16	1.85
41468--41679	75	2.8	75	79	2	246	34	24	13	27	1.93
47263--47292	7	4.3	7	95	0	51	10	16	0	73	1.09
50980--51045	31	2.1	31	86	5	89	40	10	13	34	1.79
54805--54846	16	2.7	16	77	3	50	52	0	0	47	1.00
58230--58271	22	1.9	22	95	0	75	33	9	16	40	1.81
60227--60265	5	7.6	5	91	2	60	2	17	35	43	1.63
61109--61325	107	2.0	108	99	0	427	45	8	7	38	1.63
70134--70173	21	2.0	21	90	5	64	75	0	25	0	0.81
71128--71202	29	2.5	30	78	6	82	49	9	13	28	1.72
78494--78636	70	2.0	71	98	1	279	47	1	6	44	1.39
81592--81661	27	2.6	27	84	8	97	44	5	11	38	1.64
81690--81721	16	1.9	17	93	6	57	71	0	0	28	0.86
88618--88663	19	2.3	21	75	17	53	36	0	10	52	1.37
89247--89833	314	1.9	311	84	5	781	35	18	17	29	1.93
98100--98128	5	5.8	5	100	0	58	62	0	0	37	0.96
111450--111479	13	2.2	14	94	5	53	66	0	0	33	0.92
115428--115456	14	2.1	14	100	0	58	65	0	20	13	1.26
115833--115877	24	1.9	23	86	4	63	13	20	0	66	1.24
116366--116404	17	2.2	18	90	4	62	0	20	0	79	0.73
116366--116404	18	2.2	17	86	4	51	0	20	0	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120854--120883	13	2.2	14	94	5	53	66	0	0	33	0.92
121732--121766	16	2.2	16	89	0	52	71	14	8	5	1.29
122424--122458	18	2.0	18	88	5	54	48	0	0	51	1.00
129459--129523	32	2.0	32	100	0	130	26	36	6	30	1.81
149575--149608	15	2.2	16	89	5	52	17	0	0	82	0.67
153163--153232	35	2.0	36	88	2	106	42	20	7	30	1.78
168808--168864	18	3.2	18	78	14	55	64	1	0	33	1.04
169486--169567	9	9.2	8	75	17	56	34	1	1	63	1.10
169498--169566	16	4.4	16	78	12	81	34	0	1	63	1.03
169500--169559	29	2.1	27	90	6	93	33	0	1	65	1.03
171107--171436	36	8.9	37	81	4	326	30	16	20	33	1.94
171112--171416	109	2.8	109	85	2	367	29	16	20	33	1.95
171094--171436	73	4.6	74	77	6	311	30	15	20	33	1.94
174418--174513	50	1.9	50	89	0	147	28	14	19	37	1.91
174418--174532	50	2.3	50	84	3	142	26	15	20	37	1.92
174581--174868	89	3.3	84	75	11	222	27	27	19	26	1.99
174659--174949	44	6.7	44	74	7	207	29	25	17	27	1.97
174575--174867	44	6.7	45	74	12	191	26	27	19	26	1.99
174575--174971	218	1.8	218	91	1	661	27	25	19	27	1.99
174941--175204	129	2.0	129	91	1	440	23	22	21	32	1.98
176479--176508	13	2.3	13	94	0	51	13	10	0	76	1.01
177376--177445	6	11.8	6	82	8	63	11	7	11	70	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177395--177456	29	2.1	29	88	5	90	8	6	12	72	1.26
183562--183705	37	4.0	37	84	5	170	29	13	20	36	1.90
184467--184497	16	1.9	16	100	0	62	16	19	32	32	1.94
185134--185176	22	2.0	22	95	0	77	53	16	11	18	1.72
191119--191175	28	2.0	28	100	0	114	28	17	26	28	1.98
194062--194125	6	10.7	6	80	11	51	79	9	6	4	1.04
195028--195063	7	5.4	7	87	12	58	69	0	13	16	1.19
195030--195063	13	2.6	13	90	0	59	73	0	11	14	1.10
196317--196661	129	2.7	128	90	0	537	31	19	23	25	1.98
196776--197105	44	7.6	44	70	11	146	26	19	25	27	1.99
196720--197098	173	2.2	173	81	6	403	27	18	25	28	1.98
196772--197234	217	2.1	217	93	0	782	27	19	25	27	1.98
197966--198020	27	2.0	28	85	3	76	41	32	5	20	1.75
198400--198426	6	4.5	6	100	0	54	14	0	0	85	0.61
214370--214458	23	4.1	23	70	21	84	35	19	7	37	1.81
214812--214854	22	2.0	22	90	0	68	51	16	13	18	1.77
219849--219885	18	2.1	18	85	14	51	43	2	8	45	1.47
220764--220810	19	2.4	20	73	16	53	46	0	8	44	1.33
223425--223534	49	2.4	47	81	7	136	27	18	8	46	1.77
223447--223545	49	2.0	48	84	5	128	30	16	11	42	1.82
231460--231757	149	2.0	149	98	0	578	20	21	16	41	1.90
239324--239350	12	2.2	12	100	0	54	29	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
240783--240837	23	2.4	23	80	14	60	61	0	3	34	1.13
240827--240869	15	2.9	15	75	3	52	62	4	4	27	1.35
240824--240876	14	3.7	15	72	7	56	62	3	3	30	1.30
241043--241073	9	3.4	9	90	0	53	25	12	22	38	1.90
241644--241677	14	2.4	14	90	0	50	38	0	2	58	1.13
243043--243076	17	2.0	17	88	0	50	41	17	5	35	1.74
245535--245604	29	2.4	29	81	11	88	55	0	4	40	1.19

Tables:   1

The End!