Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4194

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 340

Length: 568
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.37


Found at i:306 original size:20 final size:20

Alignment explanation


    Indices: 268--306  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

        258 TTACACAATT

                       *        
        268 CAATTTTCACATTAAATTTC
          1 CAATTTTCACACTAAATTTC

                   *      *    
        288 CAATTTTTACACTATATTT
          1 CAATTTTCACACTAAATTT

        307 GCATAAACTT


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  20   16  1.00

ACGTcount: A:0.33, C:0.18, G:0.00, T:0.49


Consensus pattern (20 bp):   
CAATTTTCACACTAAATTTC
Done.