Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold189
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1445563
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.32
Warning! 59187 characters in sequence are not A, C, G, or T
File 3 of 4
Found at i:694779 original size:30 final size:30
Alignment explanation
Indices: 694745--694805 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
694735 CATGGGCTGG
* * *
694745 CACATGGGCGTGTGTCCAACCCGTGTGGCT
1 CACATGAGCATGTGCCCAACCCGTGTGGCT
**
694775 CACATGAGCATGTGCCCAGGCCGTGTGGCT
1 CACATGAGCATGTGCCCAACCCGTGTGGCT
694805 C
1 C
694806 CTGAAAACAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.15, C:0.31, G:0.33, T:0.21
Consensus pattern (30 bp):
CACATGAGCATGTGCCCAACCCGTGTGGCT
Found at i:695930 original size:13 final size:13
Alignment explanation
Indices: 695912--695936 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
695902 TAATTTATAT
695912 GTGTGAAAATTTC
1 GTGTGAAAATTTC
695925 GTGTGAAAATTT
1 GTGTGAAAATTT
695937 TATCGTTGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:697397 original size:41 final size:41
Alignment explanation
Indices: 697347--697445 Score: 144
Period size: 41 Copynumber: 2.4 Consensus size: 41
697337 GTGAAATTAT
* *
697347 TCAGACTATATGTCTAGCAGGCTAAGTGCCGGTGAACTGAA
1 TCAGACTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
*
697388 TCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
1 TCAGACTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
* * *
697429 TTAGACTTTAAACCTAG
1 TCAGACTATAAGCCTAG
697446 TAGATGAANN
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.24
Consensus pattern (41 bp):
TCAGACTATAAGCCTAGCAGGCTAAGTGCCGGTGAACTGAA
Found at i:698273 original size:30 final size:29
Alignment explanation
Indices: 698188--698416 Score: 153
Period size: 29 Copynumber: 7.9 Consensus size: 29
698178 TATGAGGGCT
*
698188 TCCTTTTAATAGAGATAGCCAC-AAAGACA
1 TCCTTTTAACAGAGATAGCCACAAAAG-CA
* * *
698217 TCCATTTAACTGAGATAGCCATAAAAGCA
1 TCCTTTTAACAGAGATAGCCACAAAAGCA
* * *
698246 TCCTTTTTTACAGAGATGGCCACAAAAGCT
1 TCC-TTTTAACAGAGATAGCCACAAAAGCA
* * * *
698276 TCCTTTTAACAGAGATCGTCACCAAGGCA
1 TCCTTTTAACAGAGATAGCCACAAAAGCA
* * * *
698305 TCCATTTAACAAAGA-ACGCCACAAAGGCT
1 TCCTTTTAACAGAGATA-GCCACAAAAGCA
* * * * *
698334 TCCATTTAATAGAGATCGCCACAAAGGCT
1 TCCTTTTAACAGAGATAGCCACAAAAGCA
*
698363 TCCTTTTAACA-ATGATCA-CCA-AAAAGACT
1 TCCTTTTAACAGA-GAT-AGCCACAAAAG-CA
* * *
698392 TCCTTATAATAGAGATATCCACAAA
1 TCCTTTTAACAGAGATAGCCACAAA
698417 GGCTTACTTA
Statistics
Matches: 159, Mismatches: 31, Indels: 19
0.76 0.15 0.09
Matches are distributed among these distances:
28 6 0.04
29 122 0.77
30 31 0.19
ACGTcount: A:0.38, C:0.24, G:0.14, T:0.25
Consensus pattern (29 bp):
TCCTTTTAACAGAGATAGCCACAAAAGCA
Found at i:698427 original size:29 final size:28
Alignment explanation
Indices: 698323--698428 Score: 99
Period size: 29 Copynumber: 3.7 Consensus size: 28
698313 ACAAAGAACG
*
698323 CCACAAAGGCTTCCATT-TAATAGAGATCG
1 CCACAAAGGCTTCC-TTATAATAGAGAT-A
* *
698352 CCACAAAGGCTTCCTTTTAACA-ATGATCA
1 CCACAAAGGCTTCCTTATAATAGA-GAT-A
* *
698381 CCAAAAAGACTTCCTTATAATAGAGATA
1 CCACAAAGGCTTCCTTATAATAGAGATA
*
698409 TCCACAAAGGCTTACTTATA
1 -CCACAAAGGCTTCCTTATA
698429 CAGAAATTGG
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
28 4 0.06
29 59 0.92
30 1 0.02
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (28 bp):
CCACAAAGGCTTCCTTATAATAGAGATA
Found at i:700312 original size:43 final size:43
Alignment explanation
Indices: 700264--700351 Score: 131
Period size: 43 Copynumber: 2.0 Consensus size: 43
700254 TCTCTAATCA
** **
700264 TCCTTTAATTTTGTATGGTTTAGAAAAATTTGATCTTTATCGT
1 TCCTTTAATCGTGTATGGTTTAGAAAAATTCAATCTTTATCGT
*
700307 TCCTTTAATCGTGTATGGTTTAGGAAAATTCAATCTTTATCGT
1 TCCTTTAATCGTGTATGGTTTAGAAAAATTCAATCTTTATCGT
700350 TC
1 TC
700352 GGCAACTCAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.25, C:0.12, G:0.15, T:0.48
Consensus pattern (43 bp):
TCCTTTAATCGTGTATGGTTTAGAAAAATTCAATCTTTATCGT
Found at i:704432 original size:6 final size:6
Alignment explanation
Indices: 704421--704445 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
704411 ATACACAAAC
704421 AAATTA AAATTA AAATTA AAATTA A
1 AAATTA AAATTA AAATTA AAATTA A
704446 TCTAAATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (6 bp):
AAATTA
Found at i:710404 original size:51 final size:51
Alignment explanation
Indices: 710339--710473 Score: 155
Period size: 51 Copynumber: 2.6 Consensus size: 51
710329 AAAGTGATGG
* *
710339 TCACAGGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-TTCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAAT-GA
* * * * * * *
710390 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTATCGGATGGTAATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAATGA
* *
710441 TCACATGTATAGTACTATGTGCAGGATACTATG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATG
710474 TGAATCGAAC
Statistics
Matches: 69, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
51 68 0.99
52 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAATGA
Found at i:712369 original size:20 final size:20
Alignment explanation
Indices: 712346--712385 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
712336 CTTATATTTA
*
712346 ATTTAAA-ATTATTATAAAAT
1 ATTTAAATAATATT-TAAAAT
712366 ATTTAAATAATATTTAAAAT
1 ATTTAAATAATATTTAAAAT
712386 GCTTAATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
ATTTAAATAATATTTAAAAT
Found at i:715700 original size:9 final size:9
Alignment explanation
Indices: 715683--715713 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
715673 TCGAGTTGAT
715683 TCGAATAAC
1 TCGAATAAC
*
715692 TCGATTAAC
1 TCGAATAAC
715701 TCGAATAAC
1 TCGAATAAC
715710 TCGA
1 TCGA
715714 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:718386 original size:21 final size:20
Alignment explanation
Indices: 718360--718413 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 20
718350 TTTAACAACT
718360 TCTTCTTCAACAACAACTTCC
1 TCTTCTTCAACAACAACTT-C
* * *
718381 TCTTCTGCAGCAGCAACTTC
1 TCTTCTTCAACAACAACTTC
718401 -CTTC-TCAACAACA
1 TCTTCTTCAACAACA
718414 GTGTTTTCTT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
18 6 0.22
19 4 0.15
20 1 0.04
21 16 0.59
ACGTcount: A:0.28, C:0.37, G:0.06, T:0.30
Consensus pattern (20 bp):
TCTTCTTCAACAACAACTTC
Found at i:720849 original size:17 final size:17
Alignment explanation
Indices: 720827--720864 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
720817 TAAGTAGTAG
720827 CCATTCTATGATTAACT
1 CCATTCTATGATTAACT
720844 CCATTCTATGATTAACT
1 CCATTCTATGATTAACT
720861 CCAT
1 CCAT
720865 ATCTCTTCAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.29, C:0.26, G:0.05, T:0.39
Consensus pattern (17 bp):
CCATTCTATGATTAACT
Found at i:744431 original size:28 final size:28
Alignment explanation
Indices: 744347--744431 Score: 82
Period size: 28 Copynumber: 3.1 Consensus size: 28
744337 CATATGATAG
* * *
744347 TCTTGATGGACATCCCTATTTAATACAG
1 TCTTGATGGACATCCCCATTTAAGACAA
* * * * * *
744375 TCTTGACGGGCTTTCACA-TTAAGATAA
1 TCTTGATGGACATCCCCATTTAAGACAA
744402 TCTTGATGGACATCCCCATTTAAGACAA
1 TCTTGATGGACATCCCCATTTAAGACAA
744430 TC
1 TC
744432 CTGACGAACT
Statistics
Matches: 41, Mismatches: 15, Indels: 2
0.71 0.26 0.03
Matches are distributed among these distances:
27 19 0.46
28 22 0.54
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.33
Consensus pattern (28 bp):
TCTTGATGGACATCCCCATTTAAGACAA
Found at i:744448 original size:55 final size:55
Alignment explanation
Indices: 744342--744449 Score: 144
Period size: 55 Copynumber: 2.0 Consensus size: 55
744332 CCACTCATAT
* * * * * ** *
744342 GATAGTCTTGATGGACATCCCTATTTAATACAGTCTTGACGGGCTTTCACATTAA
1 GATAATCTTGATGGACATCCCCATTTAAGACAATCCTGACGAACTTCCACATTAA
744397 GATAATCTTGATGGACATCCCCATTTAAGACAATCCTGACGAACTTCCACATT
1 GATAATCTTGATGGACATCCCCATTTAAGACAATCCTGACGAACTTCCACATT
744450 TACGGTAATG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
55 45 1.00
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (55 bp):
GATAATCTTGATGGACATCCCCATTTAAGACAATCCTGACGAACTTCCACATTAA
Found at i:746999 original size:13 final size:13
Alignment explanation
Indices: 746966--747000 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
746956 AGGGTCACAC
*
746966 GGCCGTGCGGTCA
1 GGCCGTGTGGTCA
*
746979 GGCCGTGTGGTTA
1 GGCCGTGTGGTCA
746992 GGCCGTGTG
1 GGCCGTGTG
747001 CCTCACACGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.06, C:0.23, G:0.49, T:0.23
Consensus pattern (13 bp):
GGCCGTGTGGTCA
Found at i:754778 original size:46 final size:46
Alignment explanation
Indices: 754711--754801 Score: 182
Period size: 46 Copynumber: 2.0 Consensus size: 46
754701 GAAATTAATG
754711 ATTGTTACTCGAATGAATGATAACCTATGCTTATACACCGTTTGAT
1 ATTGTTACTCGAATGAATGATAACCTATGCTTATACACCGTTTGAT
754757 ATTGTTACTCGAATGAATGATAACCTATGCTTATACACCGTTTGA
1 ATTGTTACTCGAATGAATGATAACCTATGCTTATACACCGTTTGA
754802 CATCAATTTC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (46 bp):
ATTGTTACTCGAATGAATGATAACCTATGCTTATACACCGTTTGAT
Found at i:771410 original size:20 final size:20
Alignment explanation
Indices: 771385--771433 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
771375 GAAGCACTCA
*
771385 ATTTACTTTCTTACCATTCC
1 ATTTACTTACTTACCATTCC
* *
771405 ATTTACTTACTTTCCATTTC
1 ATTTACTTACTTACCATTCC
771425 ATTTACTTA
1 ATTTACTTA
771434 GCATAACTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.22, C:0.24, G:0.00, T:0.53
Consensus pattern (20 bp):
ATTTACTTACTTACCATTCC
Found at i:776545 original size:3 final size:3
Alignment explanation
Indices: 776537--776562 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
776527 CTACATCTAC
776537 TGT TGT TGT TGT TGT TGT TGT TGT TG
1 TGT TGT TGT TGT TGT TGT TGT TGT TG
776563 CTATCGACGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.35, T:0.65
Consensus pattern (3 bp):
TGT
Found at i:779165 original size:29 final size:29
Alignment explanation
Indices: 779132--779196 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
779122 AATAATTGCC
* *
779132 ACAAAGGCTTTCCTATCTAGAGTTTTACA
1 ACAAAGGCTCTCCTATCAAGAGTTTTACA
* *
779161 ACAAAGGCTCTCCTGTCAAGAGTTTTACC
1 ACAAAGGCTCTCCTATCAAGAGTTTTACA
779190 ACAAAGG
1 ACAAAGG
779197 TTGTCCTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (29 bp):
ACAAAGGCTCTCCTATCAAGAGTTTTACA
Found at i:779203 original size:29 final size:28
Alignment explanation
Indices: 779130--779203 Score: 85
Period size: 29 Copynumber: 2.5 Consensus size: 28
779120 TCAATAATTG
*
779130 CCACAAAGGCTTTCCTATCTAGAGTTTTA
1 CCACAAAGG-TTTCCTATCAAGAGTTTTA
* * *
779159 CAACAAAGGCTCTCCTGTCAAGAGTTTTA
1 CCACAAAGG-TTTCCTATCAAGAGTTTTA
779188 CCACAAAGGTTGTCCT
1 CCACAAAGGTT-TCCT
779204 TTAAATTCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 1 0.03
29 37 0.97
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.30
Consensus pattern (28 bp):
CCACAAAGGTTTCCTATCAAGAGTTTTA
Found at i:779247 original size:61 final size:61
Alignment explanation
Indices: 779181--779320 Score: 172
Period size: 61 Copynumber: 2.3 Consensus size: 61
779171 TCCTGTCAAG
* * * *
779181 AGTTTTACCACAAAGGTTGTCCTTTAAATTCAATACTCACCACAAAAGCTTTCATGTCCAA
1 AGTTTTACCACAAAGGTTGTCCATTAAACTCAATACTCAACACAAAAGCTTTCATATCCAA
* * * * * * *
779242 AGTTTTTCCACAAAGTTTGTCCATTACACTCAGTACTCAACACAAAGGCTTTCATATTCAG
1 AGTTTTACCACAAAGGTTGTCCATTAAACTCAATACTCAACACAAAAGCTTTCATATCCAA
*
779303 AGTTTTGCCACAAAGGTT
1 AGTTTTACCACAAAGGTT
779321 ATTGTTAAGC
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 66 1.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (61 bp):
AGTTTTACCACAAAGGTTGTCCATTAAACTCAATACTCAACACAAAAGCTTTCATATCCAA
Found at i:786997 original size:16 final size:15
Alignment explanation
Indices: 786969--787003 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
786959 AATAACTAGT
*
786969 TTATAATTATATTTA
1 TTATAATTATATTAA
786984 TTATAATATATATTAA
1 TTATAAT-TATATTAA
787000 TTAT
1 TTAT
787004 TATCAACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TTATAATTATATTAA
Found at i:787645 original size:24 final size:23
Alignment explanation
Indices: 787616--787674 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 23
787606 ATTTTTCTAC
*
787616 TAAATTTTAATTTTATTTAATTATT
1 TAAATTTTAA-TTTATTGAATTA-T
*
787641 TAATTTTTCAATTTATTGAATTAT
1 TAAATTTT-AATTTATTGAATTAT
787665 TAATATTTTA
1 TAA-ATTTTA
787675 TACTAATAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
24 5 0.17
25 22 0.76
26 2 0.07
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.61
Consensus pattern (23 bp):
TAAATTTTAATTTATTGAATTAT
Found at i:805039 original size:26 final size:26
Alignment explanation
Indices: 805024--805075 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
805014 TGCTTCAGTT
805024 GTTTATGAATATTGATAGAATTATTG
1 GTTTATGAATATTGATAGAATTATTG
805050 GTTTATGAATATTGATAGAATTATTG
1 GTTTATGAATATTGATAGAATTATTG
805076 ACTTACTCCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.19, T:0.46
Consensus pattern (26 bp):
GTTTATGAATATTGATAGAATTATTG
Found at i:808328 original size:21 final size:20
Alignment explanation
Indices: 808300--808338 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
808290 CTAAATGGCA
* *
808300 AAATAAATGTTTAATTTTTC
1 AAATAAATGGTCAATTTTTC
808320 AAATAAAATGGTCAATTTT
1 AAAT-AAATGGTCAATTTT
808339 GATCCAATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.44, C:0.05, G:0.08, T:0.44
Consensus pattern (20 bp):
AAATAAATGGTCAATTTTTC
Found at i:814470 original size:50 final size:50
Alignment explanation
Indices: 814341--814587 Score: 232
Period size: 49 Copynumber: 4.9 Consensus size: 50
814331 CTGAAATAAC
* ** *
814341 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTC-T-T-G
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAACTCTCATATCG
* * * *
814388 TACTGCCAATGTCATATCCCAGATATGGTCTTACATGGGAATTCTCATATCG
1 -A-TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAACTCTCATATCG
* * *
814440 ATGCCCATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAACTCTCATATCG
* * * *
814490 GTGCCAACGCCATGTCCCA-ACATGGTCATACATGGGACCTCTCATAACATCAATG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAACTCTCAT---ATC---G
* * *
814545 ATGCCAATGTCATGTCCCAGACATTGTCTTACATGGGATCTCT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAACTCT
814588 TTACCCAAAT
Statistics
Matches: 163, Mismatches: 25, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
48 1 0.01
49 61 0.37
50 59 0.36
51 2 0.01
52 3 0.02
55 17 0.10
56 20 0.12
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAACTCTCATATCG
Found at i:814515 original size:99 final size:101
Alignment explanation
Indices: 814341--814587 Score: 268
Period size: 99 Copynumber: 2.4 Consensus size: 101
814331 CTGAAATAAC
* * * * * * *
814341 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTACTGCCAATGTCATATC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATCTACTGCCAACGCCATATC
* * *
814406 CCAGATATGGTCTTACATGGGAATTCTCAT-ATC-G
66 CCAGACATGGTCATACATGGGAACTCTCATAATCAG
* * *
814440 ATGCCCATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGGTGCCAACGCCATG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATCTAC--TGCCAACGCCATA
*
814504 TCCCA-ACATGGTCATACATGGGACCTCTCATAACATCAATG
64 TCCCAGACATGGTCATACATGGGAACTCTCAT-A-ATC-A-G
* *
814545 ATGCCAATGTCATGTCCCAGACATTGTCTTACATGGGATCTCT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
814588 TTACCCAAAT
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
98 1 0.01
99 63 0.52
100 15 0.12
102 3 0.02
105 40 0.33
ACGTcount: A:0.25, C:0.28, G:0.19, T:0.28
Consensus pattern (101 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATCTACTGCCAACGCCATATC
CCAGACATGGTCATACATGGGAACTCTCATAATCAG
Found at i:817351 original size:30 final size:31
Alignment explanation
Indices: 817315--817372 Score: 91
Period size: 30 Copynumber: 1.9 Consensus size: 31
817305 CCTTTCTTTC
817315 ATCCATAAGTAAAAAGAGGTAA-GAAAACTT
1 ATCCATAAGTAAAAAGAGGTAAGGAAAACTT
* *
817345 ATCCATAATTAAAGAGAGGTAAGGAAAA
1 ATCCATAAGTAAAAAGAGGTAAGGAAAA
817373 TTACCAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.53, C:0.09, G:0.19, T:0.19
Consensus pattern (31 bp):
ATCCATAAGTAAAAAGAGGTAAGGAAAACTT
Found at i:821909 original size:30 final size:29
Alignment explanation
Indices: 821854--821929 Score: 73
Period size: 31 Copynumber: 2.5 Consensus size: 29
821844 AATTAAGCAA
* *
821854 GTTTCATATACATGTATCATCCATTTCAT
1 GTTTCATATACATATAACATCCATTTCAT
821883 GTTTCAATATATCATATAACAT-CATTTCCATAT
1 GTTTC-ATATA-CATATAACATCCATTT-C--AT
*
821916 ATTTCATATACATA
1 GTTTCATATACATA
821930 CCAATAATAG
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
29 5 0.13
30 10 0.26
31 13 0.33
32 5 0.13
33 6 0.15
ACGTcount: A:0.34, C:0.18, G:0.04, T:0.43
Consensus pattern (29 bp):
GTTTCATATACATATAACATCCATTTCAT
Found at i:822092 original size:25 final size:25
Alignment explanation
Indices: 822064--822141 Score: 79
Period size: 25 Copynumber: 3.1 Consensus size: 25
822054 TCCTATACAT
822064 GTATGCTTATACGAGCTATGAATCG
1 GTATGCTTATACGAGCTATGAATCG
* * *
822089 GTATACTT-TCACGAGCTGTAAATCG
1 GTATGCTTAT-ACGAGCTATGAATCG
* *
822114 GTAAGCTCATACGAGCTGA-GAATCG
1 GTATGCTTATACGAGCT-ATGAATCG
822139 GTA
1 GTA
822142 ACCCTAATGA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
24 1 0.02
25 40 0.95
26 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (25 bp):
GTATGCTTATACGAGCTATGAATCG
Found at i:829397 original size:25 final size:25
Alignment explanation
Indices: 829367--829425 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
829357 ATGTATGCTT
* *
829367 ATACGAGCTATGAATAGGTATGCTC
1 ATACGAGCTATAAATAGGTAAGCTC
*
829392 -TCACGAGCTATAAATCGGTAAGCTC
1 AT-ACGAGCTATAAATAGGTAAGCTC
829417 ATACGAGCT
1 ATACGAGCT
829426 GAGAATCGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 1 0.03
25 27 0.93
26 1 0.03
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.25
Consensus pattern (25 bp):
ATACGAGCTATAAATAGGTAAGCTC
Found at i:833009 original size:27 final size:26
Alignment explanation
Indices: 832969--833020 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
832959 ACAAATAATT
832969 TAAAATTTGTAAAAAGATATTAAAAAA
1 TAAAATTTGTAAAAAGATA-TAAAAAA
832996 TAAAATTT-TAAAAA-ATATATAAAAA
1 TAAAATTTGTAAAAAGATATA-AAAAA
833021 GTTCATAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 2 0.08
25 8 0.33
26 6 0.25
27 8 0.33
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (26 bp):
TAAAATTTGTAAAAAGATATAAAAAA
Found at i:840092 original size:26 final size:26
Alignment explanation
Indices: 840039--840094 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
840029 AATTTTAAAA
* * *
840039 TATTTTTAAAATACTTTTTTATTTTT
1 TATTTTTAAAATAATTTTTGATTGTT
840065 TATTTTTAAAATAAATTTTTGA-TGTT
1 TATTTTTAAAAT-AATTTTTGATTGTT
840091 TATT
1 TATT
840095 AAAAAATGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 19 0.73
27 7 0.27
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.64
Consensus pattern (26 bp):
TATTTTTAAAATAATTTTTGATTGTT
Found at i:842609 original size:40 final size:41
Alignment explanation
Indices: 842521--842609 Score: 92
Period size: 42 Copynumber: 2.2 Consensus size: 41
842511 ATTTTCCGCG
* * *
842521 AAATCGCGTCCACGTCAGCGCGATGTCAGGGTACGTGTCAG
1 AAATCGCGTCCACGTCAGCGCGATGTCAGCGTACGTGACAC
* * *
842562 AACATCGCGTCCACGTCAGTGCGAT-T-TGCTTACGTGGACAC
1 AA-ATCGCGTCCACGTCAGCGCGATGTCAGCGTACGT-GACAC
842603 AAATCGC
1 AAATCGC
842610 ACCTACGAGG
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
40 11 0.28
41 8 0.20
42 21 0.52
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (41 bp):
AAATCGCGTCCACGTCAGCGCGATGTCAGCGTACGTGACAC
Found at i:843645 original size:19 final size:19
Alignment explanation
Indices: 843610--843646 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
843600 CTTTACGGAT
*
843610 AAATTTTAAAATTATACAC
1 AAATTTTAAAATAATACAC
*
843629 AAATTTTAATATAATACA
1 AAATTTTAAAATAATACA
843647 ATTATACATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.08, G:0.00, T:0.38
Consensus pattern (19 bp):
AAATTTTAAAATAATACAC
Found at i:844024 original size:6 final size:6
Alignment explanation
Indices: 844015--844040 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
844005 TTGCTTTTGC
844015 AAATAA AAATAA AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AA
844041 GCAATTGGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:844898 original size:16 final size:17
Alignment explanation
Indices: 844879--844919 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
844869 TTTGAAGAGT
844879 TTTTATTTTTTT-ATAA
1 TTTTATTTTTTTCATAA
*
844895 TTTT-TTATTTTTCATAT
1 TTTTATT-TTTTTCATAA
844912 TTTTATTT
1 TTTTATTT
844920 AAAATATGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 5
0.78 0.04 0.19
Matches are distributed among these distances:
15 2 0.10
16 9 0.43
17 8 0.38
18 2 0.10
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTATTTTTTTCATAA
Found at i:844899 original size:18 final size:19
Alignment explanation
Indices: 844858--844906 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
844848 TTTAAAAATC
844858 TTTTTTATTTTTTTGAAGA
1 TTTTTTATTTTTTTGAAGA
*
844877 GTTTTTATTTTTTT-ATA-A
1 TTTTTTATTTTTTTGA-AGA
844895 TTTTTTATTTTT
1 TTTTTTATTTTT
844907 CATATTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 13 0.48
19 14 0.52
ACGTcount: A:0.18, C:0.00, G:0.06, T:0.76
Consensus pattern (19 bp):
TTTTTTATTTTTTTGAAGA
Found at i:845058 original size:17 final size:17
Alignment explanation
Indices: 845036--845070 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
845026 AGTTCTCGAT
*
845036 GCAATAGTATAGTGACG
1 GCAATAGTATAGTCACG
845053 GCAATAGTATAGTCACG
1 GCAATAGTATAGTCACG
845070 G
1 G
845071 TAAAAAACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.34, C:0.14, G:0.29, T:0.23
Consensus pattern (17 bp):
GCAATAGTATAGTCACG
Found at i:846596 original size:46 final size:46
Alignment explanation
Indices: 846543--846677 Score: 270
Period size: 46 Copynumber: 2.9 Consensus size: 46
846533 TTGGTCTCTG
846543 GGCATACTCTAACAATCTCCCACTAGCACTAAGACCAAACAATTTA
1 GGCATACTCTAACAATCTCCCACTAGCACTAAGACCAAACAATTTA
846589 GGCATACTCTAACAATCTCCCACTAGCACTAAGACCAAACAATTTA
1 GGCATACTCTAACAATCTCCCACTAGCACTAAGACCAAACAATTTA
846635 GGCATACTCTAACAATCTCCCACTAGCACTAAGACCAAACAAT
1 GGCATACTCTAACAATCTCCCACTAGCACTAAGACCAAACAAT
846678 CATATATCTA
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 89 1.00
ACGTcount: A:0.39, C:0.31, G:0.09, T:0.21
Consensus pattern (46 bp):
GGCATACTCTAACAATCTCCCACTAGCACTAAGACCAAACAATTTA
Found at i:851550 original size:17 final size:17
Alignment explanation
Indices: 851528--851561 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
851518 TCAATTAGAA
851528 CATACAACATATAATAT
1 CATACAACATATAATAT
851545 CATACAACATATAATAT
1 CATACAACATATAATAT
851562 GTATTTAGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.18, G:0.00, T:0.29
Consensus pattern (17 bp):
CATACAACATATAATAT
Found at i:852753 original size:5 final size:5
Alignment explanation
Indices: 852739--852768 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
852729 TGCATTCGAT
852739 AATT- AATTA AATTA AATTA AATTA AATTA A
1 AATTA AATTA AATTA AATTA AATTA AATTA A
852769 TTCATGTGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
AATTA
Found at i:860666 original size:45 final size:44
Alignment explanation
Indices: 860603--860690 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 44
860593 AACAGATACT
* *
860603 CGGTGGATTAACACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGATCAACACATAGCAACCACCTTACTAATCAATGATGTC
860647 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGT
1 CGGTGG-ATCAACACATAGCAACCACCTTACTAATCAATGATGT
860691 TCAGTTCACA
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
44 6 0.15
45 35 0.85
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (44 bp):
CGGTGGATCAACACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:862501 original size:18 final size:18
Alignment explanation
Indices: 862478--862513 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
862468 ATCCAGAAAA
862478 ACTTCTGGTTAATTCTTT
1 ACTTCTGGTTAATTCTTT
862496 ACTTCTGGTTAATTCTTT
1 ACTTCTGGTTAATTCTTT
862514 CTTTAAATAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.17, C:0.17, G:0.11, T:0.56
Consensus pattern (18 bp):
ACTTCTGGTTAATTCTTT
Found at i:867438 original size:27 final size:24
Alignment explanation
Indices: 867373--867430 Score: 62
Period size: 26 Copynumber: 2.3 Consensus size: 24
867363 GTTGCTTTAT
867373 TTTTTATTTATTTTCTTAAAATTA
1 TTTTTATTTATTTTCTTAAAATTA
* * *
867397 TTTTAATTATTATTTTTTTGAAATATA
1 TTTTTA-T-TTATTTTCTTAAAAT-TA
867424 TTTTTAT
1 TTTTTAT
867431 GGTTATTTCT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
24 5 0.19
25 1 0.04
26 14 0.52
27 7 0.26
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (24 bp):
TTTTTATTTATTTTCTTAAAATTA
Found at i:893741 original size:56 final size:54
Alignment explanation
Indices: 893616--893768 Score: 216
Period size: 56 Copynumber: 2.8 Consensus size: 54
893606 TGGCCATGGC
* *
893616 AAGAAGACCATATAATGTAAGACCTAGTCTGGGACTATGGCATCATATGGGGAA
1 AAGAAGACCATATAGTGTAAGACCTAGTCTGGGACTATGGCATAATATGGGGAA
** * *
893670 GTGAAGGCCATATAGTGTAAGACCTAGTCATGGTGGCTATGGCATAATATGGGGAA
1 AAGAAGACCATATAGTGTAAGACCTAGTC-TGG-GACTATGGCATAATATGGGGAA
* *
893726 AAGAAGACCACATAGTGTAAGACCTAGTCCGGGACTATGGCAT
1 AAGAAGACCATATAGTGTAAGACCTAGTCTGGGACTATGGCAT
893769 TATGTAGGGA
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
54 35 0.41
55 5 0.06
56 45 0.53
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.22
Consensus pattern (54 bp):
AAGAAGACCATATAGTGTAAGACCTAGTCTGGGACTATGGCATAATATGGGGAA
Found at i:894125 original size:30 final size:30
Alignment explanation
Indices: 894091--894343 Score: 179
Period size: 30 Copynumber: 8.7 Consensus size: 30
894081 TATATGTGTT
* * * *
894091 TGGACGCCTTTGTGGCTTTTTGATTTTATG
1 TGGACGCCTTTGTGGCTATCTAATGTTATG
* *
894121 TGGACGCATTTATGGCTATCTAATGTTATG
1 TGGACGCCTTTGTGGCTATCTAATGTTATG
* *
894151 TGGATGCCTTTGTGGCTATCT-ATCTGTA--
1 TGGACGCCTTTGTGGCTATCTAATGT-TATG
* * *
894179 TGGACGCCTTTGTGGCTTTTTGATGTTATG
1 TGGACGCCTTTGTGGCTATCTAATGTTATG
* *
894209 TGGACGCATTTATGGCTATCTAATGTTATG
1 TGGACGCCTTTGTGGCTATCTAATGTTATG
* * *
894239 TGGATGCTTTTGTGGCTATCT-ATCTGTA--
1 TGGACGCCTTTGTGGCTATCTAATGT-TATG
* * * *
894267 TGGACACCTATATGGCTATCT-ATCTGTA--
1 TGGACGCCTTTGTGGCTATCTAATGT-TATG
* *
894295 TGGAAGCCTTTATGGCTATCTAATG-T-T-
1 TGGACGCCTTTGTGGCTATCTAATGTTATG
* *
894322 TGGATGCCTTTTTGGCTATCTA
1 TGGACGCCTTTGTGGCTATCTA
894344 TCTATTGTGA
Statistics
Matches: 182, Mismatches: 34, Indels: 17
0.78 0.15 0.07
Matches are distributed among these distances:
27 21 0.12
28 61 0.34
29 11 0.06
30 89 0.49
ACGTcount: A:0.17, C:0.15, G:0.24, T:0.43
Consensus pattern (30 bp):
TGGACGCCTTTGTGGCTATCTAATGTTATG
Found at i:894189 original size:28 final size:28
Alignment explanation
Indices: 894121--894346 Score: 163
Period size: 28 Copynumber: 7.9 Consensus size: 28
894111 TGATTTTATG
* *
894121 TGGACGCATTTATGGCTATCTA-ATGTTA
1 TGGACGCCTTTATGGCTATCTATCTG-TA
* *
894149 TGTGGATGCCTTTGTGGCTATCTATCTGTA
1 --TGGACGCCTTTATGGCTATCTATCTGTA
* * * *
894179 TGGACGCCTTTGTGGCTTTTTGATGT-TA
1 TGGACGCCTTTATGGCTATCT-ATCTGTA
* *
894207 TGTGGACGCATTTATGGCTATCTA-ATGTTA
1 --TGGACGCCTTTATGGCTATCTATCTG-TA
* * *
894237 TGTGGATGCTTTTGTGGCTATCTATCTGTA
1 --TGGACGCCTTTATGGCTATCTATCTGTA
* *
894267 TGGACACCTATATGGCTATCTATCTGTA
1 TGGACGCCTTTATGGCTATCTATCTGTA
* * *
894295 TGGAAGCCTTTATGGCTATCTA-ATGTT
1 TGGACGCCTTTATGGCTATCTATCTGTA
* *
894322 TGGATGCCTTTTTGGCTATCTATCT
1 TGGACGCCTTTATGGCTATCTATCT
894347 ATTGTGAAAG
Statistics
Matches: 158, Mismatches: 30, Indels: 18
0.77 0.15 0.09
Matches are distributed among these distances:
27 23 0.15
28 64 0.41
29 4 0.03
30 63 0.40
31 4 0.03
ACGTcount: A:0.18, C:0.16, G:0.23, T:0.42
Consensus pattern (28 bp):
TGGACGCCTTTATGGCTATCTATCTGTA
Found at i:894195 original size:58 final size:57
Alignment explanation
Indices: 894121--894346 Score: 201
Period size: 58 Copynumber: 3.9 Consensus size: 57
894111 TGATTTTATG
* * *
894121 TGGACGCATTTATGGCTATCTAATGTTATGTGGATGCCTTTGTGGCTATCTATCTGTA
1 TGGACGCCTTTATGGCTATCTAATGTTAT-TGGACGCCTTTATGGCTATCTATCTGTA
* * * * * *
894179 TGGACGCCTTTGTGGCTTTTTGATGTTATGTGGACGCATTTATGGCTATCTA-ATGTTA
1 TGGACGCCTTTATGGCTATCTAATGTTAT-TGGACGCCTTTATGGCTATCTATCTG-TA
* * * * * *
894237 TGTGGATGCTTTTGTGGCTATCT-ATCTGTA-TGGACACCTATATGGCTATCTATCTGTA
1 --TGGACGCCTTTATGGCTATCTAATGT-TATTGGACGCCTTTATGGCTATCTATCTGTA
* * *
894295 TGGAAGCCTTTATGGCTATCTAATG-T-TTGGATGCCTTTTTGGCTATCTATCT
1 TGGACGCCTTTATGGCTATCTAATGTTATTGGACGCCTTTATGGCTATCTATCT
894347 ATTGTGAAAG
Statistics
Matches: 135, Mismatches: 26, Indels: 17
0.76 0.15 0.10
Matches are distributed among these distances:
55 22 0.16
56 18 0.13
57 4 0.03
58 67 0.50
59 5 0.04
60 19 0.14
ACGTcount: A:0.18, C:0.16, G:0.23, T:0.42
Consensus pattern (57 bp):
TGGACGCCTTTATGGCTATCTAATGTTATTGGACGCCTTTATGGCTATCTATCTGTA
Found at i:894213 original size:88 final size:88
Alignment explanation
Indices: 894091--894346 Score: 362
Period size: 88 Copynumber: 3.0 Consensus size: 88
894081 TATATGTGTT
*
894091 TGGACGCCTTTGTGGCTTTTTGATTTTATGTGGACGCATTTATGGCTATCTAATGTTATGTGGAT
1 TGGACGCCTTTGTGGCTTTTTGATCTTATGTGGACGCATTTATGGCTATCTAATGTTATGTGGAT
894156 GCCTTTGTGGCTATCTATCTGTA
66 GCCTTTGTGGCTATCTATCTGTA
*
894179 TGGACGCCTTTGTGGCTTTTTGATGTTATGTGGACGCATTTATGGCTATCTAATGTTATGTGGAT
1 TGGACGCCTTTGTGGCTTTTTGATCTTATGTGGACGCATTTATGGCTATCTAATGTTATGTGGAT
*
894244 GCTTTTGTGGCTATCTATCTGTA
66 GCCTTTGTGGCTATCTATCTGTA
* * * * * * *
894267 TGGACACCTATATGGCTATCT-ATCTGTA--TGGAAGCCTTTATGGCTATCTAATG-T-T-TGGA
1 TGGACGCCTTTGTGGCTTTTTGATCT-TATGTGGACGCATTTATGGCTATCTAATGTTATGTGGA
*
894326 TGCCTTTTTGGCTATCTATCT
65 TGCCTTTGTGGCTATCTATCT
894347 ATTGTGAAAG
Statistics
Matches: 155, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
83 23 0.15
84 1 0.01
85 1 0.01
86 23 0.15
87 3 0.02
88 104 0.67
ACGTcount: A:0.17, C:0.16, G:0.24, T:0.43
Consensus pattern (88 bp):
TGGACGCCTTTGTGGCTTTTTGATCTTATGTGGACGCATTTATGGCTATCTAATGTTATGTGGAT
GCCTTTGTGGCTATCTATCTGTA
Found at i:895835 original size:18 final size:18
Alignment explanation
Indices: 895812--895848 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
895802 CAATAATATG
*
895812 AATTCTTGAAACTAGAAT
1 AATTCTTAAAACTAGAAT
895830 AATTCTTAAAACTAGAAT
1 AATTCTTAAAACTAGAAT
895848 A
1 A
895849 TTTTTTGCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.11, G:0.08, T:0.32
Consensus pattern (18 bp):
AATTCTTAAAACTAGAAT
Found at i:896475 original size:17 final size:17
Alignment explanation
Indices: 896453--896489 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
896443 ATAAATATAA
896453 ATATAAACATAACATAT
1 ATATAAACATAACATAT
*
896470 ATATAAACATAATATAT
1 ATATAAACATAACATAT
896487 ATA
1 ATA
896490 GACAAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.32
Consensus pattern (17 bp):
ATATAAACATAACATAT
Found at i:896544 original size:43 final size:42
Alignment explanation
Indices: 896497--896577 Score: 135
Period size: 43 Copynumber: 1.9 Consensus size: 42
896487 ATAGACAAAA
*
896497 AATGTAAATATATATGTACGTATAGATATATAAAGATAGGATT
1 AATGTAAATAAATATGTACGTATAGATATATAAA-ATAGGATT
*
896540 AATGTATATAAATATGTACGTATAGATATATAAAATAG
1 AATGTAAATAAATATGTACGTATAGATATATAAAATAG
896578 TAAGATATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
42 4 0.11
43 32 0.89
ACGTcount: A:0.48, C:0.02, G:0.15, T:0.35
Consensus pattern (42 bp):
AATGTAAATAAATATGTACGTATAGATATATAAAATAGGATT
Found at i:900338 original size:20 final size:20
Alignment explanation
Indices: 900315--900355 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
900305 CAAATACACT
900315 TATACTAAGCATCAATTTCA
1 TATACTAAGCATCAATTTCA
900335 TATACTAAGCATCAATTTCA
1 TATACTAAGCATCAATTTCA
900355 T
1 T
900356 CTTTAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.20, G:0.05, T:0.37
Consensus pattern (20 bp):
TATACTAAGCATCAATTTCA
Found at i:904991 original size:24 final size:24
Alignment explanation
Indices: 904976--905027 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
904966 AATCAAAGTC
904976 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
905000 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
905024 AAAT
1 AAAT
905028 CTTCTAGAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:905880 original size:6 final size:6
Alignment explanation
Indices: 905869--905899 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
905859 CTGATTATGG
*
905869 AGACAA AGACAA AGACAA AGACAA AGCCAA A
1 AGACAA AGACAA AGACAA AGACAA AGACAA A
905900 TCTTTCATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.65, C:0.19, G:0.16, T:0.00
Consensus pattern (6 bp):
AGACAA
Found at i:909278 original size:24 final size:24
Alignment explanation
Indices: 909232--909279 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
909222 AAAATCAAAC
* *
909232 ATATTATGCTAATAAATGCTAAAT
1 ATATTATACTAATAAATACTAAAT
* *
909256 ATATTATACTCATAAATATTAAAT
1 ATATTATACTAATAAATACTAAAT
909280 CTTTTAGAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (24 bp):
ATATTATACTAATAAATACTAAAT
Found at i:916404 original size:18 final size:18
Alignment explanation
Indices: 916381--916420 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
916371 TGCCCGTCGG
916381 ACAATAGGCATAGGTACT
1 ACAATAGGCATAGGTACT
916399 ACAATAGGCATAGGTACT
1 ACAATAGGCATAGGTACT
916417 ACAA
1 ACAA
916421 AAATTCACAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.20, T:0.20
Consensus pattern (18 bp):
ACAATAGGCATAGGTACT
Found at i:917988 original size:57 final size:57
Alignment explanation
Indices: 917921--918093 Score: 213
Period size: 57 Copynumber: 3.0 Consensus size: 57
917911 TCATTTCATT
* * * *
917921 TTTTTATTTTGGAGTAAACCACATTCATTTCCAAATGATTCCATTTCTCCAGTTTCA
1 TTTTTATTTTGGAGAAAACCATAATCATTTCCAAATGATTCCATTTCTCCATTTTCA
* * * *
917978 TTTTTATTTTGGAGAAAACCATAACCATTTCCAAATGATTTCATTTCTCTATTTTCG
1 TTTTTATTTTGGAGAAAACCATAATCATTTCCAAATGATTCCATTTCTCCATTTTCA
* * * *
918035 TTTTCATTTTGGAAAAAACCATAATGATTTCCAAAT-ATTTCCTATTTTTCCATTTTCA
1 TTTTTATTTTGGAGAAAACCATAATCATTTCCAAATGA-TTCC-ATTTCTCCATTTTCA
918093 T
1 T
918094 CATTTCTATT
Statistics
Matches: 98, Mismatches: 16, Indels: 3
0.84 0.14 0.03
Matches are distributed among these distances:
56 1 0.01
57 84 0.86
58 13 0.13
ACGTcount: A:0.28, C:0.18, G:0.08, T:0.46
Consensus pattern (57 bp):
TTTTTATTTTGGAGAAAACCATAATCATTTCCAAATGATTCCATTTCTCCATTTTCA
Found at i:919912 original size:27 final size:28
Alignment explanation
Indices: 919853--919914 Score: 69
Period size: 26 Copynumber: 2.3 Consensus size: 28
919843 CGAACTGTGA
919853 TCGCC-AAAGTTGGTGCGAACTGGGGCT
1 TCGCCAAAAGTTGGTGCGAACTGGGGCT
* *
919880 T-ACCAAAAG-TGGTGCGAATTGGGTG-T
1 TCGCCAAAAGTTGGTGCGAACTGGG-GCT
919906 TCGCCAAAA
1 TCGCCAAAA
919915 TTCAAACAAG
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
26 17 0.59
27 12 0.41
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (28 bp):
TCGCCAAAAGTTGGTGCGAACTGGGGCT
Found at i:920648 original size:28 final size:28
Alignment explanation
Indices: 920616--920706 Score: 103
Period size: 28 Copynumber: 3.3 Consensus size: 28
920606 GAAAATGTTT
920616 AGCTCTCTGTTTAGCTCTGCTTTGTGCG
1 AGCTCTCTGTTTAGCTCTGCTTTGTGCG
* * *
920644 AGCTCTCTGTTTGGCTCTACTTTGTACG
1 AGCTCTCTGTTTAGCTCTGCTTTGTGCG
* * * * *
920672 AGCTTTCTATTTAGTTTTGC-TTGTGTG
1 AGCTCTCTGTTTAGCTCTGCTTTGTGCG
920699 AGCTCTCT
1 AGCTCTCT
920707 ATTTGGTCTA
Statistics
Matches: 51, Mismatches: 12, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
27 12 0.24
28 39 0.76
ACGTcount: A:0.10, C:0.22, G:0.22, T:0.46
Consensus pattern (28 bp):
AGCTCTCTGTTTAGCTCTGCTTTGTGCG
Found at i:920722 original size:27 final size:27
Alignment explanation
Indices: 920636--920758 Score: 99
Period size: 27 Copynumber: 4.5 Consensus size: 27
920626 TTAGCTCTGC
* *
920636 TTTGTGCGAGCTCTCTGTTTGGCTCTAC
1 TTTGTGCGAGCTCTCTATTTGG-TCTAT
* * *
920664 TTTGTACGAGCTTTCTATTTAGT-T-T
1 TTTGTGCGAGCTCTCTATTTGGTCTAT
*
920689 TGCTTGTGTGAGCTCTCTATTTGGTCTAT
1 T--TTGTGCGAGCTCTCTATTTGGTCTAT
** *
920718 TTTGTGTAAGCTCTCTATTTTGT-TCAT
1 TTTGTGCGAGCTCTCTATTTGGTCT-AT
*
920745 TTTGTGCAAGCTCT
1 TTTGTGCGAGCTCT
920759 TCGTCTGGCT
Statistics
Matches: 78, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
25 1 0.01
26 2 0.03
27 54 0.69
28 19 0.24
29 2 0.03
ACGTcount: A:0.12, C:0.18, G:0.20, T:0.50
Consensus pattern (27 bp):
TTTGTGCGAGCTCTCTATTTGGTCTAT
Found at i:928997 original size:27 final size:26
Alignment explanation
Indices: 928967--929030 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 26
928957 TTCATTAATG
928967 TGTTGGCGAGCTAGGGGTTCACCAGTC
1 TGTTGGCGAGCT-GGGGTTCACCAGTC
* **
928994 TGTTTGGCAAGCTGGGGTTCGTCAGTC
1 TG-TTGGCGAGCTGGGGTTCACCAGTC
929021 TGTATGGCGA
1 TGT-TGGCGA
929031 ACACAGTTCC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
26 1 0.03
27 21 0.68
28 9 0.29
ACGTcount: A:0.14, C:0.19, G:0.38, T:0.30
Consensus pattern (26 bp):
TGTTGGCGAGCTGGGGTTCACCAGTC
Found at i:929896 original size:27 final size:28
Alignment explanation
Indices: 929808--929897 Score: 101
Period size: 28 Copynumber: 3.2 Consensus size: 28
929798 CTAATGTTTT
*
929808 AGCTCTCGGTTTGGCTTTGCTTTGTGCG
1 AGCTCTCTGTTTGGCTTTGCTTTGTGCG
* * * * *
929836 CGCTCTCTATTTGGCTCTGATTTGTACG
1 AGCTCTCTGTTTGGCTTTGCTTTGTGCG
*
929864 AGCTCTTTGTTTGG-TTTGCTTTGTGCG
1 AGCTCTCTGTTTGGCTTTGCTTTGTGCG
*
929891 AACTCTC
1 AGCTCTC
929898 CATTTAGCCT
Statistics
Matches: 48, Mismatches: 14, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
27 15 0.31
28 33 0.69
ACGTcount: A:0.08, C:0.22, G:0.26, T:0.44
Consensus pattern (28 bp):
AGCTCTCTGTTTGGCTTTGCTTTGTGCG
Found at i:933832 original size:22 final size:22
Alignment explanation
Indices: 933807--933852 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
933797 ATCATGTAAG
933807 TTCATTTTTATCCCTTTTCAAT
1 TTCATTTTTATCCCTTTTCAAT
933829 TTCATTTTTATCCCTTTTCAAT
1 TTCATTTTTATCCCTTTTCAAT
933851 TT
1 TT
933853 AATCCTTATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.17, C:0.22, G:0.00, T:0.61
Consensus pattern (22 bp):
TTCATTTTTATCCCTTTTCAAT
Found at i:933861 original size:22 final size:22
Alignment explanation
Indices: 933814--933862 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
933804 AAGTTCATTT
* **
933814 TTATCCCTTTTCAATTTCATTT
1 TTATCCCTTTTCAATTTAATCC
933836 TTATCCCTTTTCAATTTAATCC
1 TTATCCCTTTTCAATTTAATCC
933858 TTATC
1 TTATC
933863 TCACCCTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.20, C:0.24, G:0.00, T:0.55
Consensus pattern (22 bp):
TTATCCCTTTTCAATTTAATCC
Found at i:946133 original size:42 final size:42
Alignment explanation
Indices: 946053--946134 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 42
946043 CATTTTCTCT
**
946053 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGTCCAACTATGGTCTTACACATATGCACATATTG
*
946095 ATGCCATA-TCCCAGCTATGGTCTTACACA-ATAGCACATAT
1 ATGCCATAGT-CCAACTATGGTCTTACACATAT-GCACATAT
946135 CACACCGATG
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
41 3 0.09
42 32 0.91
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (42 bp):
ATGCCATAGTCCAACTATGGTCTTACACATATGCACATATTG
Found at i:946150 original size:47 final size:48
Alignment explanation
Indices: 946094--946186 Score: 134
Period size: 47 Copynumber: 2.0 Consensus size: 48
946084 TTTACATATT
* *
946094 GATGCCATATCCCAGCTATGGTCTTACAC-AATAGCACATATCACACC
1 GATGCCATATCCCAGATATGGTCTTACACGAAAAGCACATATCACACC
* * *
946141 GATGCCATATCCCGGATATGGTCTTATACGAAAATCACATATCACA
1 GATGCCATATCCCAGATATGGTCTTACACGAAAAGCACATATCACA
946187 TGTTGCCAGG
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
47 26 0.65
48 14 0.35
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (48 bp):
GATGCCATATCCCAGATATGGTCTTACACGAAAAGCACATATCACACC
Found at i:948812 original size:45 final size:46
Alignment explanation
Indices: 948729--948823 Score: 131
Period size: 45 Copynumber: 2.1 Consensus size: 46
948719 AACATATACT
* *
948729 CGGTGGATTCAGCACATAGCAAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAAACCACCTTACTAATCAATGATGTC
* *
948775 CGGTGGAATCA-CTACATAGC-AGCCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAGC-ACATAGCAAACCACCTTACTAATCAATGATGTC
948820 CGGT
1 CGGT
948824 TCACATAGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
45 27 0.61
46 17 0.39
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (46 bp):
CGGTGGAATCAGCACATAGCAAACCACCTTACTAATCAATGATGTC
Found at i:948890 original size:51 final size:50
Alignment explanation
Indices: 948820--949015 Score: 205
Period size: 51 Copynumber: 3.9 Consensus size: 50
948810 CAATGATGTT
* * * *
948820 CGGTTCACATAGTACCCTGCACATAGTACTACACATGTGACCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATC
* * * * *
948871 TGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATC
* * * * * *
948922 CGGTACGCATAGTAGCCTGCGCATAGTACTACACATGCGACC-TATCATTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TC
* *
948972 CGGTACACGTAGTAGCTTACACATAGTACTACACACGTGACCAT
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
949016 CATTTTCACT
Statistics
Matches: 115, Mismatches: 27, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
49 2 0.02
50 38 0.33
51 73 0.63
52 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (50 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATACCATC
Found at i:949005 original size:101 final size:101
Alignment explanation
Indices: 948827--949011 Score: 273
Period size: 101 Copynumber: 1.8 Consensus size: 101
948817 GTTCGGTTCA
* * *
948827 CATAGTACCCTGCACATAGTACTACACATGTGACCATTACCATCTGATACACGTAGTAGCCTGCA
1 CATAGTACCCTGCACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTAGCCTACA
948892 CATAGTACTACACACGTGATCGAAACTATCCGGTACG
65 CATAGTACTACACACGTGATCGAAACTATCCGGTACG
* * * * *
948929 CATAGTAGCCTGCGCATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAGCTTACA
1 CATAGTACCCTGCACATAGTACTACACATGCGACCATACCA-TCCGATACACGTAGTAGCCTACA
948993 CATAGTACTACACACGTGA
65 CATAGTACTACACACGTGA
949012 CCATCATTTT
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
100 4 0.05
101 38 0.51
102 32 0.43
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (101 bp):
CATAGTACCCTGCACATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAGCCTACAC
ATAGTACTACACACGTGATCGAAACTATCCGGTACG
Found at i:953906 original size:16 final size:16
Alignment explanation
Indices: 953863--953911 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 16
953853 TTCGCTGTAT
* *
953863 TGGAATAAAGACGTAT
1 TGGAATAAAGGCGTAA
953879 TGGAATAAAGGCGTAA
1 TGGAATAAAGGCGTAA
*
953895 TGGAATAGAGGCGTAA
1 TGGAATAAAGGCGTAA
953911 T
1 T
953912 AGTTAATAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.41, C:0.06, G:0.31, T:0.22
Consensus pattern (16 bp):
TGGAATAAAGGCGTAA
Found at i:953953 original size:18 final size:19
Alignment explanation
Indices: 953908--953953 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
953898 AATAGAGGCG
953908 TAATAGTTAATAAAAATATA
1 TAATA-TTAATAAAAATATA
* *
953928 TAAT-TTAATAAAATTCT-
1 TAATATTAATAAAAATATA
953945 TAATATTAA
1 TAATATTAA
953954 ATATTCTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 4 0.17
18 15 0.65
20 4 0.17
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (19 bp):
TAATATTAATAAAAATATA
Found at i:954128 original size:121 final size:120
Alignment explanation
Indices: 953914--954170 Score: 487
Period size: 121 Copynumber: 2.1 Consensus size: 120
953904 GGCGTAATAG
953914 TTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAA
1 TTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAA
*
953979 TCATAATATATAATACTATAAAATATAATTTTAACATAATTATTATTAAATATAAT
66 TCATAATATATAATACTATAAAATATAA-TTTAAAATAATTATTATTAAATATAAT
954035 TTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAA
1 TTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAA
954100 TCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAATATAAT
66 TCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAATATAAT
*
954155 TTAATAAAAACATATA
1 TTAATAAAAATATATA
954171 TTTTTTATAT
Statistics
Matches: 134, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
120 41 0.31
121 93 0.69
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.42
Consensus pattern (120 bp):
TTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTTACTAAAA
TCATAATATATAATACTATAAAATATAATTTAAAATAATTATTATTAAATATAAT
Found at i:962005 original size:28 final size:28
Alignment explanation
Indices: 961969--962059 Score: 83
Period size: 28 Copynumber: 3.2 Consensus size: 28
961959 CATGCAGTAG
* * *
961969 CAGTTTGGGCCTGGGCCCTATACAGCAA
1 CAGTGTGGGCCTGAGCCCAATACAGCAA
* * *
961997 CAGTGTGGGCCTTAGCCCAATATAGTAA
1 CAGTGTGGGCCTGAGCCCAATACAGCAA
* * *
962025 CAGTGTGTGGGCCTTAGCCCAAAACAGTAA
1 CA--GTGTGGGCCTGAGCCCAATACAGCAA
962055 CAGTG
1 CAGTG
962060 CAATGCAATA
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
28 27 0.51
30 26 0.49
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.22
Consensus pattern (28 bp):
CAGTGTGGGCCTGAGCCCAATACAGCAA
Found at i:962035 original size:30 final size:30
Alignment explanation
Indices: 961999--962059 Score: 104
Period size: 30 Copynumber: 2.0 Consensus size: 30
961989 TACAGCAACA
* *
961999 GTGTGGGCCTTAGCCCAATATAGTAACAGT
1 GTGTGGGCCTTAGCCCAAAACAGTAACAGT
962029 GTGTGGGCCTTAGCCCAAAACAGTAACAGT
1 GTGTGGGCCTTAGCCCAAAACAGTAACAGT
962059 G
1 G
962060 CAATGCAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (30 bp):
GTGTGGGCCTTAGCCCAAAACAGTAACAGT
Found at i:962198 original size:26 final size:25
Alignment explanation
Indices: 962163--962236 Score: 76
Period size: 26 Copynumber: 2.8 Consensus size: 25
962153 ACACTAATAT
* * *
962163 CGCAACAAAGCTGCATGTAATAGTGA
1 CGCAGCAAAGCTGCA-GTAACAGTAA
*
962189 TGCAGCAAAGCTGCCAGTAACAGTAA
1 CGCAGCAAAGCTG-CAGTAACAGTAA
*
962215 CGTAGCAAAGCTGCCAGTAACA
1 CGCAGCAAAGCTG-CAGTAACA
962237 ATATACGTGG
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 39 0.95
27 2 0.05
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (25 bp):
CGCAGCAAAGCTGCAGTAACAGTAA
Found at i:962454 original size:27 final size:27
Alignment explanation
Indices: 962424--962726 Score: 342
Period size: 27 Copynumber: 11.3 Consensus size: 27
962414 GTGCAATAGC
*
962424 CATTTTACCCTTCTAGGGTATTTCGGT
1 CATTTTACCCTTCGAGGGTATTTCGGT
*
962451 CATTTTACCCTTCG-GGGATATTTTGGT
1 CATTTTACCCTTCGAGGG-TATTTCGGT
* *
962478 CATTTTACCCTTCGGGGGTATTTCAAG-
1 CATTTTACCCTTCGAGGGTATTTC-GGT
962505 CATTTTACCCTTCGAGGGTATTTCGGT
1 CATTTTACCCTTCGAGGGTATTTCGGT
* *
962532 CATTTTACCCTTCGAGGGTA-TACAGT
1 CATTTTACCCTTCGAGGGTATTTCGGT
* * * *
962558 CATTTTACACTTCAAGGGTATTTCAGA
1 CATTTTACCCTTCGAGGGTATTTCGGT
** *
962585 CATTTTACCCTTTAAGGGTATTTCAGT
1 CATTTTACCCTTCGAGGGTATTTCGGT
** *
962612 CACGTTACCCTTCGAGGGTATTTCAGT
1 CATTTTACCCTTCGAGGGTATTTCGGT
* * *
962639 CATTTTACCATTCGAGGATATTTTGGT
1 CATTTTACCCTTCGAGGGTATTTCGGT
* * *
962666 CATTGTACCCTTCAAGAGTATTTCGGT
1 CATTTTACCCTTCGAGGGTATTTCGGT
** *
962693 CATTTTACCCTTTTAGGGTATTTCGAT
1 CATTTTACCCTTCGAGGGTATTTCGGT
962720 CATTTTA
1 CATTTTA
962727 AGCCCATTAC
Statistics
Matches: 235, Mismatches: 36, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
26 26 0.11
27 205 0.87
28 4 0.02
ACGTcount: A:0.20, C:0.20, G:0.18, T:0.41
Consensus pattern (27 bp):
CATTTTACCCTTCGAGGGTATTTCGGT
Found at i:969199 original size:28 final size:28
Alignment explanation
Indices: 969168--969240 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
969158 CTGGGTCTGG
*
969168 GCCCTATACAGCAACAATGTGGGACTTA
1 GCCCAATACAGCAACAATGTGGGACTTA
* * *
969196 GCCCAATACAGTAACAGTGTGGGCCTTA
1 GCCCAATACAGCAACAATGTGGGACTTA
* *
969224 GCCCAAAACAGTAACAA
1 GCCCAATACAGCAACAA
969241 CGCAATATGC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.18
Consensus pattern (28 bp):
GCCCAATACAGCAACAATGTGGGACTTA
Found at i:969418 original size:26 final size:27
Alignment explanation
Indices: 969370--969449 Score: 74
Period size: 26 Copynumber: 3.0 Consensus size: 27
969360 GGTAATAGTG
* * **
969370 ATGCAGCTAAGCTGCCAGTAACAGTA-
1 ATGCAGCAAAGCTACCAACAACAGTAT
969396 ATGCAGCAAAGCTACCAACAACAGTAT
1 ATGCAGCAAAGCTACCAACAACAGTAT
** * *
969423 ATGTGGCAAAGCCACCAA-TACAGTAT
1 ATGCAGCAAAGCTACCAACAACAGTAT
969449 A
1 A
969450 CTTCCTCTAT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
26 30 0.67
27 15 0.33
ACGTcount: A:0.40, C:0.24, G:0.19, T:0.17
Consensus pattern (27 bp):
ATGCAGCAAAGCTACCAACAACAGTAT
Found at i:974432 original size:23 final size:23
Alignment explanation
Indices: 974406--974449 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
974396 TTTCTTACTG
*
974406 TAGTAATTTTCGGGGTATTACAA
1 TAGTAATTTTCGGGATATTACAA
974429 TAGTAATTTTCGGGATATTAC
1 TAGTAATTTTCGGGATATTAC
974450 GCATTTTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (23 bp):
TAGTAATTTTCGGGATATTACAA
Found at i:978554 original size:19 final size:19
Alignment explanation
Indices: 978532--978593 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
978522 AGGAGTACCG
978532 AAGTACAACAGGGGCACGT
1 AAGTACAACAGGGGCACGT
* ** *
978551 AAGTGCCATTAGGGGTACCG-
1 AAGT-ACAACAGGGGCA-CGT
*
978571 AAGTACAACAGGAGCACGT
1 AAGTACAACAGGGGCACGT
978590 AAGT
1 AAGT
978594 GTGATTAGGG
Statistics
Matches: 31, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
18 2 0.06
19 15 0.48
20 12 0.39
21 2 0.06
ACGTcount: A:0.35, C:0.19, G:0.31, T:0.15
Consensus pattern (19 bp):
AAGTACAACAGGGGCACGT
Found at i:978569 original size:39 final size:39
Alignment explanation
Indices: 978506--978634 Score: 186
Period size: 39 Copynumber: 3.3 Consensus size: 39
978496 CATAACCACA
* * * *
978506 GCACGAAAGTGCTATCAGGAGTACCGAAGTACAACAGGG
1 GCACGTAAGTGCCATTAGGGGTACCGAAGTACAACAGGG
*
978545 GCACGTAAGTGCCATTAGGGGTACCGAAGTACAACAGGA
1 GCACGTAAGTGCCATTAGGGGTACCGAAGTACAACAGGG
**
978584 GCACGTAAGTGTGATTAGGGGTACCGAAGTACAACAGGG
1 GCACGTAAGTGCCATTAGGGGTACCGAAGTACAACAGGG
*
978623 GCACGTTAGTGC
1 GCACGTAAGTGC
978635 AATCAGAGGT
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.32, C:0.19, G:0.33, T:0.16
Consensus pattern (39 bp):
GCACGTAAGTGCCATTAGGGGTACCGAAGTACAACAGGG
Found at i:983741 original size:26 final size:27
Alignment explanation
Indices: 983684--983742 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
983674 ATAATTACCT
* * * *
983684 TAAACTCCCCTCTTTAATTTATGAGAA
1 TAAAATCCCCTATTAAATTTATGACAA
*
983711 AAAAATCCCCTATTAAATTT-TGACAA
1 TAAAATCCCCTATTAAATTTATGACAA
983737 TAAAAT
1 TAAAAT
983743 ATGTAATAAC
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 10 0.38
27 16 0.62
ACGTcount: A:0.42, C:0.19, G:0.05, T:0.34
Consensus pattern (27 bp):
TAAAATCCCCTATTAAATTTATGACAA
Found at i:984950 original size:24 final size:24
Alignment explanation
Indices: 984922--984973 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
984912 TTCGTAGGTC
* *
984922 AAATAAATTATGCTAATAAATGCT
1 AAATAAATTATACTAATAAATACT
*
984946 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
984970 AAAT
1 AAAT
984974 CTTCTACAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:987489 original size:17 final size:19
Alignment explanation
Indices: 987467--987501 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
987457 GCAGACTGGC
987467 TTATAT-ATTTAT-ATATA
1 TTATATAATTTATGATATA
987484 TTATATAATTTATGATAT
1 TTATATAATTTATGATAT
987502 TAGTATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 6 0.38
19 4 0.25
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (19 bp):
TTATATAATTTATGATATA
Found at i:987502 original size:17 final size:18
Alignment explanation
Indices: 987467--987511 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
987457 GCAGACTGGC
*
987467 TTATAT-ATTTATATATA
1 TTATATAATTTATAGATA
987484 TTATATAATTTAT-GATA
1 TTATATAATTTATAGATA
987501 TTAGTATAATT
1 TTA-TATAATT
987512 CACCACTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 12 0.48
18 13 0.52
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (18 bp):
TTATATAATTTATAGATA
Found at i:989236 original size:17 final size:17
Alignment explanation
Indices: 989208--989258 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 17
989198 CTTATAAATC
989208 ATAAAAAT-TTTAAAAA
1 ATAAAAATATTTAAAAA
989224 ATAAAAATATTTAAAAA
1 ATAAAAATATTTAAAAA
*
989241 TTAACAAA-ATTTAAAAA
1 ATAA-AAATATTTAAAAA
989258 A
1 A
989259 GTTTGTAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
16 8 0.26
17 20 0.65
18 3 0.10
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (17 bp):
ATAAAAATATTTAAAAA
Found at i:989961 original size:29 final size:30
Alignment explanation
Indices: 989907--989968 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
989897 TGGGTATTCT
989907 TTAAATTTGTAAAAAAAGATAGAAATTAAA
1 TTAAATTTGTAAAAAAAGATAGAAATTAAA
*
989937 TTAAATTTGTGAAAAAA-ATAGAAATTAAA
1 TTAAATTTGTAAAAAAAGATAGAAATTAAA
989966 TTA
1 TTA
989969 TGAAGTGTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 15 0.48
30 16 0.52
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.32
Consensus pattern (30 bp):
TTAAATTTGTAAAAAAAGATAGAAATTAAA
Found at i:992267 original size:99 final size:100
Alignment explanation
Indices: 992096--992294 Score: 391
Period size: 99 Copynumber: 2.0 Consensus size: 100
992086 CGCAGAGCTG
992096 ACCACGGCTGAGAAACAGGAAATTCAGATGAAGAAAGCAAAGCTAATTAACATGCTTGATGAGGT
1 ACCACGGCTGAGAAACAGGAAATTCAGATGAAGAAAGCAAAGCTAATTAACATGCTTGATGAGGT
992161 ATGGAAATTAGATTATATATATAT-TATATATATA
66 ATGGAAATTAGATTATATATATATATATATATATA
992195 ACCACGGCTGAGAAACAGGAAATTCAGATGAAGAAAGCAAAGCTAATTAACATGCTTGATGAGGT
1 ACCACGGCTGAGAAACAGGAAATTCAGATGAAGAAAGCAAAGCTAATTAACATGCTTGATGAGGT
992260 ATGGAAATTAGATTATATATATATATATATATATA
66 ATGGAAATTAGATTATATATATATATATATATATA
992295 TGGAAAAAAC
Statistics
Matches: 99, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
99 89 0.90
100 10 0.10
ACGTcount: A:0.44, C:0.10, G:0.19, T:0.27
Consensus pattern (100 bp):
ACCACGGCTGAGAAACAGGAAATTCAGATGAAGAAAGCAAAGCTAATTAACATGCTTGATGAGGT
ATGGAAATTAGATTATATATATATATATATATATA
Found at i:1000630 original size:22 final size:22
Alignment explanation
Indices: 1000579--1000630 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
1000569 AATTAATTAA
1000579 ATTTT-TTA-AAATTTAAAAAT
1 ATTTTATTATAAATTTAAAAAT
* *
1000599 ATTTTTTTATAAATTT-AAATT
1 ATTTTATTATAAATTTAAAAAT
1000620 ATTTTAATTAT
1 ATTTT-ATTAT
1000631 TTTATATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 5 0.19
21 12 0.44
22 10 0.37
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (22 bp):
ATTTTATTATAAATTTAAAAAT
Found at i:1000756 original size:9 final size:9
Alignment explanation
Indices: 1000712--1000753 Score: 52
Period size: 9 Copynumber: 4.8 Consensus size: 9
1000702 TATATGTTAA
1000712 ATTTTAATT
1 ATTTTAATT
1000721 ATTTTAATT
1 ATTTTAATT
1000730 ATTTTATATT
1 ATTTTA-ATT
*
1000740 -TTTGAATT
1 ATTTTAATT
1000748 -TTTTAA
1 ATTTTAA
1000754 ATTGTAAACA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
8 8 0.27
9 19 0.63
10 3 0.10
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (9 bp):
ATTTTAATT
Found at i:1000783 original size:101 final size:102
Alignment explanation
Indices: 1000608--1000810 Score: 390
Period size: 101 Copynumber: 2.0 Consensus size: 102
1000598 TATTTTTTTA
1000608 TAAATTTAAATTATTTTAATTATTTTATATTTTTGAATTTTTTAAATTGTAAACATTAATTAATT
1 TAAATTTAAATTATTTTAATTATTTTATATTTTTGAATTTTTTAAATTGTAAACATTAATTAATT
1000673 GTTTACATGTTATCTACTTGGCAAT-CACATATATGT
66 GTTTACATGTTATCTACTTGGCAATCCACATATATGT
*
1000709 TAAATTTTAATTATTTTAATTATTTTATATTTTTGAATTTTTTAAATTGTAAACATTAATTAATT
1 TAAATTTAAATTATTTTAATTATTTTATATTTTTGAATTTTTTAAATTGTAAACATTAATTAATT
1000774 GTTTACATGTTATCTACTTGGCAATCCACATATATGT
66 GTTTACATGTTATCTACTTGGCAATCCACATATATGT
1000811 CACATTAGAG
Statistics
Matches: 100, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
101 89 0.89
102 11 0.11
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (102 bp):
TAAATTTAAATTATTTTAATTATTTTATATTTTTGAATTTTTTAAATTGTAAACATTAATTAATT
GTTTACATGTTATCTACTTGGCAATCCACATATATGT
Found at i:1004766 original size:16 final size:17
Alignment explanation
Indices: 1004737--1004775 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
1004727 TAGGTCCAAC
*
1004737 AAAAATGTGCAAAAAAT
1 AAAAATGTGAAAAAAAT
*
1004754 AAAAATTTGAAAAAAAT
1 AAAAATGTGAAAAAAAT
1004771 AAAAA
1 AAAAA
1004776 GTAAAAATGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.72, C:0.03, G:0.08, T:0.18
Consensus pattern (17 bp):
AAAAATGTGAAAAAAAT
Found at i:1004793 original size:24 final size:24
Alignment explanation
Indices: 1004747--1004794 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
1004737 AAAAATGTGC
**
1004747 AAAAAATAAAAATTTGAAAAAAAT
1 AAAAAATAAAAATGAGAAAAAAAT
*
1004771 AAAAAGTAAAAATGAGAAGAAAAA
1 AAAAAATAAAAATGAGAA-AAAAA
1004795 GTATAGAACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.75, C:0.00, G:0.10, T:0.15
Consensus pattern (24 bp):
AAAAAATAAAAATGAGAAAAAAAT
Found at i:1005188 original size:13 final size:13
Alignment explanation
Indices: 1005170--1005199 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
1005160 AAACTATATT
*
1005170 TTAACTAAGTAAA
1 TTAACTAAGAAAA
1005183 TTAACTAAGAAAA
1 TTAACTAAGAAAA
1005196 TTAA
1 TTAA
1005200 AAATGTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.30
Consensus pattern (13 bp):
TTAACTAAGAAAA
Found at i:1025167 original size:75 final size:77
Alignment explanation
Indices: 1025079--1025242 Score: 224
Period size: 86 Copynumber: 2.0 Consensus size: 77
1025069 CCATCCTAGG
1025079 AATTTCATG-T-CATTATCAAATTGATGTCAAACGGTGTATGAGCATAGGTCATCATTCATTCGA
1 AATTTCATGATACATTATCAAATTGATGTCAAACGGTGTATGAGCATAGGTCATCATTCATTCGA
1025142 GTAACAATCATT
66 GTAACAATCATT
*
1025154 AATTTCATGTCATTACATAGCCATTATCAAATTGATGTTAAACGGTGTATGAGCATAGGTCATCA
1 AATTTCATG-------ATA--CATTATCAAATTGATGTCAAACGGTGTATGAGCATAGGTCATCA
1025219 TTCATTCGAGTAACAATCATT
57 TTCATTCGAGTAACAATCATT
1025240 AAT
1 AAT
1025243 CTCGATACCA
Statistics
Matches: 77, Mismatches: 1, Indels: 11
0.87 0.01 0.12
Matches are distributed among these distances:
75 9 0.12
83 1 0.01
86 67 0.87
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.35
Consensus pattern (77 bp):
AATTTCATGATACATTATCAAATTGATGTCAAACGGTGTATGAGCATAGGTCATCATTCATTCGA
GTAACAATCATT
Found at i:1032304 original size:16 final size:15
Alignment explanation
Indices: 1032279--1032312 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
1032269 AAAGTTGATA
*
1032279 ATAATTAATATACATT
1 ATAATAAATATA-ATT
1032295 ATAATAAATATAATT
1 ATAATAAATATAATT
1032310 ATA
1 ATA
1032313 TATTACTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:1032393 original size:17 final size:17
Alignment explanation
Indices: 1032342--1032393 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
1032332 ATTTATTAAA
1032342 AATTAATATAA-TATATT
1 AATTAATATAATTATA-T
* *
1032359 AATTATTATTACTT-TAT
1 AATTAATA-TAATTATAT
1032376 AATTAATATAATTATAT
1 AATTAATATAATTATAT
1032393 A
1 A
1032394 TTACATTTCT
Statistics
Matches: 28, Mismatches: 4, Indels: 6
0.74 0.11 0.16
Matches are distributed among these distances:
16 4 0.14
17 19 0.68
18 4 0.14
19 1 0.04
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (17 bp):
AATTAATATAATTATAT
Found at i:1037783 original size:20 final size:20
Alignment explanation
Indices: 1037748--1037796 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
1037738 ATCATGGTCT
*
1037748 TTGCTTA-TTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
1037767 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
1037787 TTGCTTACTT
1 TTGCTTACTT
1037797 AAATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 6 0.23
20 20 0.77
ACGTcount: A:0.14, C:0.22, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:1040369 original size:12 final size:12
Alignment explanation
Indices: 1040342--1040383 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
1040332 TTAGAGAGTT
* *
1040342 ACACGGCCTGGT
1 ACACGGGCTGGG
1040354 ACACGGG-TGAGG
1 ACACGGGCTG-GG
1040366 ACACGGGCTGGG
1 ACACGGGCTGGG
1040378 ACACGG
1 ACACGG
1040384 TCATGTGTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
11 2 0.08
12 22 0.85
13 2 0.08
ACGTcount: A:0.21, C:0.26, G:0.43, T:0.10
Consensus pattern (12 bp):
ACACGGGCTGGG
Found at i:1048620 original size:41 final size:41
Alignment explanation
Indices: 1048575--1048666 Score: 139
Period size: 41 Copynumber: 2.2 Consensus size: 41
1048565 GGCTTAGCAC
* *
1048575 CTAGCAGGCTTATTGCCAGTGAAACAATTCAGACTTTATGT
1 CTAGCAGGCTTAATGCCAGTGAAACAATTCAGACTATATGT
* *
1048616 CTAGCAGGCTTAATGCCGGTGAAACATTTCAGACTATATGT
1 CTAGCAGGCTTAATGCCAGTGAAACAATTCAGACTATATGT
*
1048657 CTAGTAGGCT
1 CTAGCAGGCT
1048667 AAGATCCAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (41 bp):
CTAGCAGGCTTAATGCCAGTGAAACAATTCAGACTATATGT
Found at i:1049384 original size:41 final size:41
Alignment explanation
Indices: 1049285--1049387 Score: 136
Period size: 41 Copynumber: 2.5 Consensus size: 41
1049275 GGCTTAGCAC
* * * *
1049285 CTAGAAGGCTTATTGCCAGTGAAACAATTCAGACTTTATGT
1 CTAGCAGGCTTAATGCCGGTGAAACAATTCAGACTATATGT
*
1049326 CTAGCAGGCTTAATGCCGGTGAAACATTTCAGACTATATGT
1 CTAGCAGGCTTAATGCCGGTGAAACAATTCAGACTATATGT
*
1049367 CTAGTAGGC-TAAGTGCCGGTG
1 CTAGCAGGCTTAA-TGCCGGTG
1049388 TACTGAATCA
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 3 0.05
41 52 0.95
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.29
Consensus pattern (41 bp):
CTAGCAGGCTTAATGCCGGTGAAACAATTCAGACTATATGT
Found at i:1051007 original size:49 final size:48
Alignment explanation
Indices: 1050948--1051078 Score: 190
Period size: 49 Copynumber: 2.7 Consensus size: 48
1050938 TTGAATTTTA
* *
1050948 AAAACTCTTTTAAATAATAATCTAAATTCTATTTAATTATCCTTTATTT
1 AAAACTCTTTTAAATAATAAT-TAAATTCTATTTAATTATCATTTATCT
* *
1050997 AAAACTCTTTTAAATAATAATTAAATTCTGTTTTAATTATTATTTATCT
1 AAAACTCTTTTAAATAATAATTAAATTCT-ATTTAATTATCATTTATCT
* *
1051046 AAAACTCTTTTAAATAAAAATTAAATTTTATTT
1 AAAACTCTTTTAAATAATAATTAAATTCTATTT
1051079 CCTTATCTAA
Statistics
Matches: 74, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
48 11 0.15
49 63 0.85
ACGTcount: A:0.41, C:0.09, G:0.01, T:0.49
Consensus pattern (48 bp):
AAAACTCTTTTAAATAATAATTAAATTCTATTTAATTATCATTTATCT
Found at i:1051151 original size:94 final size:94
Alignment explanation
Indices: 1051027--1051199 Score: 276
Period size: 94 Copynumber: 1.8 Consensus size: 94
1051017 TTAAATTCTG
* *
1051027 TTTTAATTATTATTTATCTAAAACTCTTTTAAATAAAAATTAAATTTTATTTCCTTATCTAATAA
1 TTTTAATTATTATTTATCTAAAACTATTTTAAATAAAAATTAAATTCTATTTCCTTATCTAATAA
*
1051092 TGAATATATCAAATCCTTTTGATTTTGAA
66 GGAATATATCAAATCCTTTTGATTTTGAA
* * *
1051121 TTTTAATTGTTATTTATATTAAAA-TATTTTAAATAATAATTAAATTCTATTTCCTTATCTAATA
1 TTTTAATTATTATTTAT-CTAAAACTATTTTAAATAAAAATTAAATTCTATTTCCTTATCTAATA
1051185 AGGAATATATCAAAT
65 AGGAATATATCAAAT
1051200 TCCCTTTTTA
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
94 67 0.93
95 5 0.07
ACGTcount: A:0.40, C:0.08, G:0.03, T:0.49
Consensus pattern (94 bp):
TTTTAATTATTATTTATCTAAAACTATTTTAAATAAAAATTAAATTCTATTTCCTTATCTAATAA
GGAATATATCAAATCCTTTTGATTTTGAA
Found at i:1056802 original size:17 final size:17
Alignment explanation
Indices: 1056776--1056810 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
1056766 AGCTTGGCAA
1056776 TGACTCCACAAAATATT
1 TGACTCCACAAAATATT
*
1056793 TGACTTCACAAAATATT
1 TGACTCCACAAAATATT
1056810 T
1 T
1056811 TGAAATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.40, C:0.20, G:0.06, T:0.34
Consensus pattern (17 bp):
TGACTCCACAAAATATT
Found at i:1061580 original size:51 final size:52
Alignment explanation
Indices: 1061454--1061673 Score: 231
Period size: 51 Copynumber: 4.3 Consensus size: 52
1061444 TGATGGTCAC
* * * * * *
1061454 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-A-TGATAGGTCGT
1 GTGTGTAGTACTATGTGCAGGCTACTACGCGTACCAGATAGTGTTCGATCAT
* *
1061504 ATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGT-TTCGATCAT
1 GTGTGTAGTACTATGTGCAGGCTACTACGCGTACCAGATAGTGTTCGATCAT
* * *
1061555 GTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGAATGATAATGGTC-A-CA-
1 GTGTGTAGTACTATGTGCAGGCTACTACGCGTACC--A-GATAGTGTTCGATCAT
* * *
1061607 -TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-TTCGATCAC
1 GTGTGTAGTACTATGTGCAGGCTACTACGCGTACCAGATAGTGTTCGATCAT
1061657 GTGTGTAGTACTATGTG
1 GTGTGTAGTACTATGTG
1061674 NNNNNNNNNN
Statistics
Matches: 142, Mismatches: 18, Indels: 19
0.79 0.10 0.11
Matches are distributed among these distances:
47 2 0.01
48 6 0.04
49 2 0.01
50 34 0.24
51 86 0.61
52 1 0.01
53 3 0.02
54 6 0.04
55 2 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.32
Consensus pattern (52 bp):
GTGTGTAGTACTATGTGCAGGCTACTACGCGTACCAGATAGTGTTCGATCAT
Found at i:1061646 original size:102 final size:101
Alignment explanation
Indices: 1061450--1061673 Score: 387
Period size: 102 Copynumber: 2.2 Consensus size: 101
1061440 AAAGTGATGG
**
1061450 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCGTATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCACATGTGTAGTAC
1061515 TATGTGCAGGCTACTATGCGTACCAGATAGTTTCGA
66 TATGTGCAGGCTACTATGCGTACCAGATAGTTTCGA
*
1061551 TCATGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-GAATGATAATGGTCACATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT-A-GGTCACATGTGTAGT
*
1061615 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTCGA
64 ACTATGTGCAGGCTACTATGCGTACCAGATAGTTTCGA
1061653 TCACGTGTGTAGTACTATGTG
1 TCACGTGTGTAGTACTATGTG
1061674 NNNNNNNNNN
Statistics
Matches: 116, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
100 7 0.06
101 39 0.34
102 70 0.60
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGATAGGTCACATGTGTAGTAC
TATGTGCAGGCTACTATGCGTACCAGATAGTTTCGA
Found at i:1069102 original size:43 final size:41
Alignment explanation
Indices: 1069010--1069125 Score: 135
Period size: 43 Copynumber: 2.8 Consensus size: 41
1069000 AGATTCCCCG
* * *
1069010 AGGGGTTACTAAGTTCTGATTCCCCGAATGATTGATTCTAA
1 AGGGGTTGCTAAGTTCTGATTCCCCGTATCATTGATTCTAA
* *
1069051 AGGTGGTTGCTAAGTTCTGATTCCACCGTATCCTTGATTGTGAA
1 AGG-GGTTGCTAAGTTCTGATTCC-CCGTATCATTGATTCT-AA
*
1069095 AGGGGTTGCTATGTGT-TGATTCCCCGTATCA
1 AGGGGTTGCTAAGT-TCTGATTCCCCGTATCA
1069126 CTGGATATAA
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
41 3 0.05
42 26 0.41
43 29 0.45
44 6 0.09
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (41 bp):
AGGGGTTGCTAAGTTCTGATTCCCCGTATCATTGATTCTAA
Found at i:1071100 original size:21 final size:22
Alignment explanation
Indices: 1071074--1071114 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
1071064 GAACCATACT
*
1071074 GACCTCG-ATGTCGTGACATAG
1 GACCTCGTATGTCGCGACATAG
1071095 GACCTCGTATGTCGCGACAT
1 GACCTCGTATGTCGCGACAT
1071115 CACCTTTGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.22, C:0.27, G:0.27, T:0.24
Consensus pattern (22 bp):
GACCTCGTATGTCGCGACATAG
Found at i:1075084 original size:21 final size:21
Alignment explanation
Indices: 1075058--1075106 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
1075048 AACTACTAGG
* * *
1075058 GGTGTCGCAACATGGAACCCC
1 GGTGTCACAACACGAAACCCC
1075079 GGTGTCACAACACGAAACCCC
1 GGTGTCACAACACGAAACCCC
1075100 GGTGTCA
1 GGTGTCA
1075107 TGACATTGCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.27, C:0.33, G:0.27, T:0.14
Consensus pattern (21 bp):
GGTGTCACAACACGAAACCCC
Found at i:1078613 original size:14 final size:15
Alignment explanation
Indices: 1078596--1078624 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1078586 AAAGAAAGAT
1078596 CTTGA-AACCCTAGG
1 CTTGACAACCCTAGG
1078610 CTTGACAACCCTAGG
1 CTTGACAACCCTAGG
1078625 AAGCCATTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 5 0.36
15 9 0.64
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.21
Consensus pattern (15 bp):
CTTGACAACCCTAGG
Found at i:1083067 original size:26 final size:26
Alignment explanation
Indices: 1083031--1083276 Score: 248
Period size: 26 Copynumber: 9.3 Consensus size: 26
1083021 GGTGTTGACC
*
1083031 GAAATACCCTCGATGGGTAAATTATT
1 GAAATACCCTCGATGGGTAAATTACT
* *
1083057 GAAATACCCTCGATAGGTAAATTACC
1 GAAATACCCTCGATGGGTAAATTACT
* * * *
1083083 AAAATACCCTTGATGTGTATATTACT
1 GAAATACCCTCGATGGGTAAATTACT
*
1083109 GAAATACCCTCGATGGGTAAATTACC
1 GAAATACCCTCGATGGGTAAATTACT
* * *
1083135 AAAATACCCTTGATGGGGAAATTA-T
1 GAAATACCCTCGATGGGTAAATTACT
*
1083160 CGAAATACCTTCGATGGGTAAATTACT
1 -GAAATACCCTCGATGGGTAAATTACT
1083187 GAAATACTCC-CGATGGGTAAATTACT
1 GAAATAC-CCTCGATGGGTAAATTACT
*
1083213 GAAATACCC-CTG-TGGGGCAAAATTACT
1 GAAATACCCTC-GAT-GGG-TAAATTACT
* * *
1083240 GAAATACCCCCAGAAGGGTAGATTGACT
1 GAAATACCCTC-GATGGGTAAATT-ACT
*
1083268 GATATACCC
1 GAAATACCC
1083277 CTAGTAGATG
Statistics
Matches: 182, Mismatches: 29, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
25 4 0.02
26 139 0.76
27 23 0.13
28 16 0.09
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (26 bp):
GAAATACCCTCGATGGGTAAATTACT
Found at i:1085360 original size:32 final size:32
Alignment explanation
Indices: 1085319--1085387 Score: 138
Period size: 32 Copynumber: 2.2 Consensus size: 32
1085309 ATGCCTTTGC
1085319 CTTAAATTAAACTTCTTTTGGGTGAGGACGTA
1 CTTAAATTAAACTTCTTTTGGGTGAGGACGTA
1085351 CTTAAATTAAACTTCTTTTGGGTGAGGACGTA
1 CTTAAATTAAACTTCTTTTGGGTGAGGACGTA
1085383 CTTAA
1 CTTAA
1085388 GGATCTTATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.29, C:0.13, G:0.20, T:0.38
Consensus pattern (32 bp):
CTTAAATTAAACTTCTTTTGGGTGAGGACGTA
Found at i:1097078 original size:16 final size:17
Alignment explanation
Indices: 1097054--1097087 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
1097044 AAATATTATG
*
1097054 AAATGAAAA-CAAACAA
1 AAATAAAAACCAAACAA
1097070 AAATAAAAACCAAACAA
1 AAATAAAAACCAAACAA
1097087 A
1 A
1097088 TGCCATCCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.76, C:0.15, G:0.03, T:0.06
Consensus pattern (17 bp):
AAATAAAAACCAAACAA
Found at i:1099287 original size:15 final size:16
Alignment explanation
Indices: 1099267--1099296 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
1099257 TGGAGCTTTG
1099267 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
1099282 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
1099297 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:1099757 original size:21 final size:21
Alignment explanation
Indices: 1099733--1099787 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
1099723 AATTAAACTA
1099733 TATATGTATATATGGATAAGT
1 TATATGTATATATGGATAAGT
* *
1099754 TATA-GTCAAATATGTATAAGT
1 TATATGT-ATATATGGATAAGT
* *
1099775 TAGATATATATAT
1 TATATGTATATAT
1099788 TTGGGATGCA
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
20 2 0.07
21 24 0.89
22 1 0.04
ACGTcount: A:0.42, C:0.02, G:0.15, T:0.42
Consensus pattern (21 bp):
TATATGTATATATGGATAAGT
Found at i:1108169 original size:20 final size:20
Alignment explanation
Indices: 1108144--1108230 Score: 68
Period size: 20 Copynumber: 4.3 Consensus size: 20
1108134 TTGTATGGGA
*
1108144 TTTGCACTTCGGTGCCTCTG
1 TTTGCACTTCGGTGCCCCTG
* *
1108164 TTTGCACTTTGATGCCCCTG
1 TTTGCACTTCGGTGCCCCTG
* * * *
1108184 TATACACTTCGGTGTCCCTC
1 TTTGCACTTCGGTGCCCCTG
* *
1108204 TTTGTACATT-TGTGCCCCTG
1 TTTGCAC-TTCGGTGCCCCTG
1108224 TTATGCA
1 TT-TGCA
1108231 TCTATGATGC
Statistics
Matches: 49, Mismatches: 16, Indels: 3
0.72 0.24 0.04
Matches are distributed among these distances:
20 44 0.90
21 5 0.10
ACGTcount: A:0.11, C:0.29, G:0.20, T:0.40
Consensus pattern (20 bp):
TTTGCACTTCGGTGCCCCTG
Found at i:1108220 original size:40 final size:40
Alignment explanation
Indices: 1108148--1108224 Score: 104
Period size: 40 Copynumber: 1.9 Consensus size: 40
1108138 ATGGGATTTG
*
1108148 CACTTCGGTGCCTCTGTTTGCACTTTGATGCCCCTGTATA
1 CACTTCGGTGCCTCTCTTTGCACTTTGATGCCCCTGTATA
*
1108188 CACTTCGGTGTCC-CTCTTTGTACATTTG-TGCCCCTGT
1 CACTTCGGTG-CCTCTCTTTGCAC-TTTGATGCCCCTGT
1108225 TATGCATCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 27 0.82
41 6 0.18
ACGTcount: A:0.10, C:0.31, G:0.19, T:0.39
Consensus pattern (40 bp):
CACTTCGGTGCCTCTCTTTGCACTTTGATGCCCCTGTATA
Found at i:1114377 original size:90 final size:90
Alignment explanation
Indices: 1114224--1114405 Score: 355
Period size: 90 Copynumber: 2.0 Consensus size: 90
1114214 AGGACTAAAT
1114224 TGTAAAAAGTTTAAATGTTAGGGGTAATTTCATAATTTTTCATAAATACGAATTATGGATTAAAT
1 TGTAAAAAGTTTAAATGTTAGGGGTAATTTCATAATTTTTCATAAATACGAATTATGGATTAAAT
*
1114289 TGAATACTTGACGTACTTAATTGAA
66 TGAATACTTGAAGTACTTAATTGAA
1114314 TGTAAAAAGTTTAAATGTTAGGGGTAATTTCATAATTTTTCATAAATACGAATTATGGATTAAAT
1 TGTAAAAAGTTTAAATGTTAGGGGTAATTTCATAATTTTTCATAAATACGAATTATGGATTAAAT
1114379 TGAATACTTGAAGTACTTAATTGAA
66 TGAATACTTGAAGTACTTAATTGAA
1114404 TG
1 TG
1114406 AAATTATCTA
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 91 1.00
ACGTcount: A:0.39, C:0.06, G:0.16, T:0.39
Consensus pattern (90 bp):
TGTAAAAAGTTTAAATGTTAGGGGTAATTTCATAATTTTTCATAAATACGAATTATGGATTAAAT
TGAATACTTGAAGTACTTAATTGAA
Done.