Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3840

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 385

Length: 642
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39


Found at i:610 original size:3 final size:3

Alignment explanation


    Indices: 602--628  Score: 54
    Period size: 3  Copynumber: 9.0  Consensus size: 3

        592 ATATGATACT

                                               
        602 TTA TTA TTA TTA TTA TTA TTA TTA TTA
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA

        629 AATGTTATTG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   24  1.00

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (3 bp):   
TTA

Done.