Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2334

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 589

Length: 983
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.31


Found at i:169 original size:11 final size:12

Alignment explanation


    Indices: 148--189  Score: 54
    Period size: 11  Copynumber: 3.7  Consensus size: 12

        138 ACTAATCCTA

                        
        148 TCTCAAATTTCC
          1 TCTCAAATTTCC

                        
        160 TCTC-AATTTCC
          1 TCTCAAATTTCC

                         
        171 T-TCCAAATTT-C
          1 TCT-CAAATTTCC

                    
        182 TCTCAAAT
          1 TCTCAAAT

        190 CCATATTTAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 7
        0.79            0.00        0.21

Matches are distributed among these distances:
  10    1  0.04
  11   16  0.59
  12   10  0.37

ACGTcount: A:0.26, C:0.31, G:0.00, T:0.43


Consensus pattern (12 bp):   
TCTCAAATTTCC

Found at i:277 original size:11 final size:11

Alignment explanation


    Indices: 244--285  Score: 59
    Period size: 11  Copynumber: 3.9  Consensus size: 11

        234 GTTAAATCCC

                       
        244 TTTTTTT-AAA
          1 TTTTTTTAAAA

             **        
        254 TAATTTTAAAA
          1 TTTTTTTAAAA

                       
        265 TTTTTTTAAAA
          1 TTTTTTTAAAA

                      
        276 TTTTTTTAAA
          1 TTTTTTTAAA

        286 CCGTAAAAAT


Statistics
Matches: 27,  Mismatches: 4, Indels: 1
        0.84            0.12        0.03

Matches are distributed among these distances:
  10    5  0.19
  11   22  0.81

ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62


Consensus pattern (11 bp):   
TTTTTTTAAAA
Done.