Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2954

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 491

Length: 819
ACGTcount: A:0.40, C:0.16, G:0.10, T:0.34


Found at i:493 original size:33 final size:35

Alignment explanation


    Indices: 433--504  Score: 112
    Period size: 33  Copynumber: 2.1  Consensus size: 35

        423 TTTAGAAAAA

                                               
        433 TCAAGCTTAAGTGATCTTTAAATAAGGGAAAACAT
          1 TCAAGCTTAAGTGATCTTTAAATAAGGGAAAACAT

                     *         *               
        468 TCAA-CTTATGTGATCTTTTAA-AAGGGAAAACAT
          1 TCAAGCTTAAGTGATCTTTAAATAAGGGAAAACAT

                
        501 TCAA
          1 TCAA

        505 TTTGCTTAAA


Statistics
Matches: 35,  Mismatches: 2, Indels: 2
        0.90            0.05        0.05

Matches are distributed among these distances:
  33   16  0.46
  34   15  0.43
  35    4  0.11

ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31


Consensus pattern (35 bp):   
TCAAGCTTAAGTGATCTTTAAATAAGGGAAAACAT
Done.