Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1477

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1670
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.31

Warning! 188 characters in sequence are not A, C, G, or T


Found at i:1620 original size:26 final size:26

Alignment explanation


    Indices: 1591--1641  Score: 93
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1581 AAATTAATGC

                                      
       1591 TAATTAAACTGAAATATTGAATGTTG
          1 TAATTAAACTGAAATATTGAATGTTG

                        *            
       1617 TAATTAAACTGATATATTGAATGTT
          1 TAATTAAACTGAAATATTGAATGTT

       1642 TTCTTTTATT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   24  1.00

ACGTcount: A:0.41, C:0.04, G:0.14, T:0.41


Consensus pattern (26 bp):   
TAATTAAACTGAAATATTGAATGTTG
Done.