Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 100 of 145
Found at i:33398708 original size:17 final size:17
Alignment explanation
Indices: 33398688--33398731 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
33398678 TACTAATAAC
33398688 AATAATAAAAT-AAATA
1 AATAATAAAATAAAATA
33398704 TAATAAT-AAATAAAATA
1 -AATAATAAAATAAAATA
33398721 AATAAATAAAA
1 AAT-AATAAAA
33398732 GGGGAGGATA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 7 0.29
17 14 0.58
18 3 0.12
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (17 bp):
AATAATAAAATAAAATA
Found at i:33402530 original size:20 final size:20
Alignment explanation
Indices: 33402501--33402544 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
33402491 ATTAAAATGT
* *
33402501 AAAA-ATTAAATTAGAAACA
1 AAAATATTAAAATAAAAACA
*
33402520 AAAATATTAAAATAAAAATA
1 AAAATATTAAAATAAAAACA
33402540 AAAAT
1 AAAAT
33402545 GGCTAAATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (20 bp):
AAAATATTAAAATAAAAACA
Found at i:33407469 original size:6 final size:6
Alignment explanation
Indices: 33407446--33407486 Score: 66
Period size: 6 Copynumber: 6.8 Consensus size: 6
33407436 AACAAAAAAT
33407446 TATTATA TATTT- TATTTA TATTTA TATTTA TATTTA TATTT
1 TATT-TA TATTTA TATTTA TATTTA TATTTA TATTTA TATTT
33407487 TCCTTAATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.15
6 24 0.73
7 4 0.12
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TATTTA
Found at i:33416988 original size:32 final size:32
Alignment explanation
Indices: 33416952--33417079 Score: 256
Period size: 32 Copynumber: 4.0 Consensus size: 32
33416942 AAACTTTATC
33416952 AATCTATCAACTATCACCCAAATTGAATTCTT
1 AATCTATCAACTATCACCCAAATTGAATTCTT
33416984 AATCTATCAACTATCACCCAAATTGAATTCTT
1 AATCTATCAACTATCACCCAAATTGAATTCTT
33417016 AATCTATCAACTATCACCCAAATTGAATTCTT
1 AATCTATCAACTATCACCCAAATTGAATTCTT
33417048 AATCTATCAACTATCACCCAAATTGAATTCTT
1 AATCTATCAACTATCACCCAAATTGAATTCTT
33417080 CTTTCTTGGT
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 96 1.00
ACGTcount: A:0.38, C:0.25, G:0.03, T:0.34
Consensus pattern (32 bp):
AATCTATCAACTATCACCCAAATTGAATTCTT
Found at i:33421743 original size:40 final size:42
Alignment explanation
Indices: 33421656--33421769 Score: 119
Period size: 40 Copynumber: 2.8 Consensus size: 42
33421646 CCTTTCGGGT
* *
33421656 CTTTAGCGGCGTTTTTTGAAAAAGCGCCGCTAATGCTGGTAA
1 CTTTAGCGGCGATTTTTGAAAAAGCGCCGCTAATGCTGGGAA
* *
33421698 CTTTAGCGGC-ATTTTTGAGAAAGCG-CGCTAATGCTGGGGGA
1 CTTTAGCGGCGATTTTTGAAAAAGCGCCGCTAATGCT-GGGAA
** * *
33421739 -TTTAGTAGCG-TTTTTGAAAAGGCACCGCTAA
1 CTTTAGCGGCGATTTTTGAAAAAGCGCCGCTAA
33421770 AAATATTTTA
Statistics
Matches: 60, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
40 28 0.47
41 22 0.37
42 10 0.17
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (42 bp):
CTTTAGCGGCGATTTTTGAAAAAGCGCCGCTAATGCTGGGAA
Found at i:33422132 original size:14 final size:14
Alignment explanation
Indices: 33422113--33422146 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
33422103 ATTTTAAGGT
33422113 TTAGGGAGTATGGA
1 TTAGGGAGTATGGA
* *
33422127 TTAGGGATTATGGT
1 TTAGGGAGTATGGA
33422141 TTAGGG
1 TTAGGG
33422147 GTTGGGATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.41, T:0.35
Consensus pattern (14 bp):
TTAGGGAGTATGGA
Found at i:33422179 original size:15 final size:15
Alignment explanation
Indices: 33422159--33422192 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
33422149 TGGGATTTAA
*
33422159 GGTTTAGGGGTTATG
1 GGTTTAGGGGTTAGG
*
33422174 GGTTTATGGGTTAGG
1 GGTTTAGGGGTTAGG
33422189 GGTT
1 GGTT
33422193 AGACATTAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.47, T:0.41
Consensus pattern (15 bp):
GGTTTAGGGGTTAGG
Found at i:33422384 original size:14 final size:14
Alignment explanation
Indices: 33422347--33422377 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
33422337 TTAATTATCA
33422347 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
33422361 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
33422375 TTA
1 TTA
33422378 AGGTTTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.52
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:33422419 original size:15 final size:15
Alignment explanation
Indices: 33422401--33422450 Score: 75
Period size: 15 Copynumber: 3.4 Consensus size: 15
33422391 GCTATTTTAA
*
33422401 GGTTTATGGATTATG
1 GGTTTAGGGATTATG
33422416 GGTTTAGGGATTATG
1 GGTTTAGGGATTATG
*
33422431 GGTTTAGGGTTTA-G
1 GGTTTAGGGATTATG
33422445 GGTTTA
1 GGTTTA
33422451 TGATTTACGG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
14 7 0.21
15 26 0.79
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (15 bp):
GGTTTAGGGATTATG
Found at i:33422421 original size:22 final size:22
Alignment explanation
Indices: 33422396--33422470 Score: 82
Period size: 22 Copynumber: 3.4 Consensus size: 22
33422386 AAGATGCTAT
*
33422396 TTTAAGGTTTATGGA-TTATGGG
1 TTTAGGGTTTATGGATTTA-GGG
* *
33422418 TTTAGGGATTATGGGTTTAGGG
1 TTTAGGGTTTATGGATTTAGGG
*
33422440 TTTAGGGTTTAT-GATTTACGG
1 TTTAGGGTTTATGGATTTAGGG
33422461 TTTAAGGGTT
1 TTT-AGGGTT
33422471 GGGGTTCAAG
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
21 10 0.22
22 32 0.71
23 3 0.07
ACGTcount: A:0.20, C:0.01, G:0.33, T:0.45
Consensus pattern (22 bp):
TTTAGGGTTTATGGATTTAGGG
Found at i:33422442 original size:7 final size:7
Alignment explanation
Indices: 33422396--33422531 Score: 76
Period size: 7 Copynumber: 18.7 Consensus size: 7
33422386 AAGATGCTAT
*
33422396 TTTAAGG
1 TTTAGGG
*
33422403 TTTATGG
1 TTTAGGG
*
33422410 ATTATGGG
1 TTTA-GGG
33422418 TTTAGGG
1 TTTAGGG
*
33422425 ATTATGGG
1 TTTA-GGG
33422433 TTTAGGG
1 TTTAGGG
33422440 TTTAGGG
1 TTTAGGG
* *
33422447 TTTATGA
1 TTTAGGG
*
33422454 TTTACGG
1 TTTAGGG
33422461 TTTAAGGG
1 TTT-AGGG
*
33422469 -TTGGGG
1 TTTAGGG
* * *
33422475 TTCAAGA
1 TTTAGGG
33422482 TTTAGGG
1 TTTAGGG
*
33422489 ATTAGAGG
1 TTTAG-GG
*
33422497 GTTAGGGG
1 TTTA-GGG
*
33422505 TTAAGGG
1 TTTAGGG
*
33422512 GTTAGGGG
1 TTTA-GGG
33422520 TTTAGGG
1 TTTAGGG
33422527 TTTAG
1 TTTAG
33422532 ATTAATTAGT
Statistics
Matches: 96, Mismatches: 26, Indels: 14
0.71 0.19 0.10
Matches are distributed among these distances:
6 3 0.03
7 63 0.66
8 29 0.30
9 1 0.01
ACGTcount: A:0.21, C:0.01, G:0.39, T:0.39
Consensus pattern (7 bp):
TTTAGGG
Found at i:33422519 original size:15 final size:15
Alignment explanation
Indices: 33422495--33422531 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
33422485 AGGGATTAGA
33422495 GGGTTAGGGGTTAAG
1 GGGTTAGGGGTTAAG
*
33422510 GGGTTAGGGGTTTAG
1 GGGTTAGGGGTTAAG
*
33422525 GGTTTAG
1 GGGTTAG
33422532 ATTAATTAGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.16, C:0.00, G:0.51, T:0.32
Consensus pattern (15 bp):
GGGTTAGGGGTTAAG
Found at i:33422805 original size:14 final size:15
Alignment explanation
Indices: 33422778--33422816 Score: 55
Period size: 14 Copynumber: 2.7 Consensus size: 15
33422768 AAATAATTAC
33422778 ATATGGATTTAGGGA
1 ATATGGATTTAGGGA
*
33422793 TTATGGA-TTAGGGA
1 ATATGGATTTAGGGA
33422807 ATATGG-TTTA
1 ATATGGATTTA
33422817 AGGGTTGGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.31, C:0.00, G:0.31, T:0.38
Consensus pattern (15 bp):
ATATGGATTTAGGGA
Found at i:33426074 original size:43 final size:43
Alignment explanation
Indices: 33425843--33426078 Score: 255
Period size: 43 Copynumber: 5.5 Consensus size: 43
33425833 TTTCTGTAAA
* **
33425843 CGCCGCTAAAGGA-CATGATCTTTAGCGGCGTTTAAGATAAAAG
1 CGCCGCTAAA-GATCATGTTCTTTAGCGGCGTTTGTGATAAAAG
* * * * * * *
33425886 CGCCACTAAAGGTAATGATCTTTAGCGGCATTTGTGGGT-AAAC
1 CGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGT-GATAAAAG
* * *
33425929 CGCCGCCAAAGATCATGTTATTTTAG-AGCGTTTGTGATAAAAG
1 CGCCGCTAAAGATCATGTT-CTTTAGCGGCGTTTGTGATAAAAG
* *
33425972 CACCGCTAAAGATCATGTTCTTTAGTGGCGTTTGTGATAAAAG
1 CGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGATAAAAG
*
33426015 CGCCGTTAAATG-TCATGTTCTTTAGCGGCGTTTGTGATAAAAG
1 CGCCGCTAAA-GATCATGTTCTTTAGCGGCGTTTGTGATAAAAG
*
33426058 CGCCGCTAATGATCATGTTCT
1 CGCCGCTAAAGATCATGTTCT
33426079 ATAGTGGCAT
Statistics
Matches: 159, Mismatches: 27, Indels: 14
0.80 0.14 0.07
Matches are distributed among these distances:
42 9 0.06
43 142 0.89
44 8 0.05
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (43 bp):
CGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGATAAAAG
Found at i:33436556 original size:5 final size:5
Alignment explanation
Indices: 33436546--33436605 Score: 50
Period size: 5 Copynumber: 11.8 Consensus size: 5
33436536 AAAGAAACAG
* ** * *
33436546 AGAAA AGAAA ACAAA AGGCA AGAGAA AG-AA AGAAA AGAAA ATAAA ATAAA
1 AGAAA AGAAA AGAAA AGAAA AGA-AA AGAAA AGAAA AGAAA AGAAA AGAAA
33436596 AGAAA TAGAA
1 AGAAA -AGAA
33436606 CGTGAGAAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
4 4 0.09
5 33 0.75
6 7 0.16
ACGTcount: A:0.73, C:0.03, G:0.18, T:0.05
Consensus pattern (5 bp):
AGAAA
Found at i:33441365 original size:28 final size:27
Alignment explanation
Indices: 33441326--33441378 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 27
33441316 AAAATAATTA
*
33441326 AAATTCAATATTTTAATAATTTAAGTGT
1 AAATTCAATATTTT-ATAATTAAAGTGT
33441354 AAATT-AATTATTTTATAATTAAAGT
1 AAATTCAA-TATTTTATAATTAAAGT
33441379 ATGAATTTCG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 12 0.52
28 11 0.48
ACGTcount: A:0.45, C:0.02, G:0.06, T:0.47
Consensus pattern (27 bp):
AAATTCAATATTTTATAATTAAAGTGT
Found at i:33441828 original size:21 final size:21
Alignment explanation
Indices: 33441804--33441851 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
33441794 ACAAGTCACA
*
33441804 TGGATGGTTTGGGCATGCATG
1 TGGATGGTTTAGGCATGCATG
33441825 TGGATGGTTTAGGCATGCATG
1 TGGATGGTTTAGGCATGCATG
33441846 TGGATG
1 TGGATG
33441852 ATTTCGGCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.17, C:0.08, G:0.42, T:0.33
Consensus pattern (21 bp):
TGGATGGTTTAGGCATGCATG
Found at i:33443035 original size:16 final size:18
Alignment explanation
Indices: 33443008--33443040 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
33442998 TAAAATTGGG
33443008 TTGAGAAAATTA-TTTAA
1 TTGAGAAAATTAGTTTAA
33443025 TTGAG-AAATTAGTTTA
1 TTGAGAAAATTAGTTTA
33443041 TTTAAATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAGTTTAA
Found at i:33449213 original size:15 final size:15
Alignment explanation
Indices: 33449193--33449235 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
33449183 TATTTGTTTC
33449193 TTTAATTTATTTTAG
1 TTTAATTTATTTTAG
*
33449208 TTTAATTT-TTTTTG
1 TTTAATTTATTTTAG
*
33449222 TTTTATTTAATTTT
1 TTTAATTT-ATTTT
33449236 TCTCATAACG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 12 0.50
15 8 0.33
16 4 0.17
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (15 bp):
TTTAATTTATTTTAG
Found at i:33453222 original size:27 final size:27
Alignment explanation
Indices: 33453192--33453243 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
33453182 AGGAAATAAA
* * *
33453192 AAAAAGAAAGGGAAAGAAAGAAACTAG
1 AAAAAGAAAAGAAAAGAAAAAAACTAG
33453219 AAAAAGAAAAGAAAAGAAAAAAACT
1 AAAAAGAAAAGAAAAGAAAAAAACT
33453244 GATGTGAGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.73, C:0.04, G:0.19, T:0.04
Consensus pattern (27 bp):
AAAAAGAAAAGAAAAGAAAAAAACTAG
Found at i:33463099 original size:11 final size:11
Alignment explanation
Indices: 33463069--33463110 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
33463059 AATTAATTTA
33463069 AAAATAATATT
1 AAAATAATATT
*
33463080 -AAGTCAATATT
1 AAAAT-AATATT
33463091 AAAATAATATT
1 AAAATAATATT
33463102 AAAAATAAT
1 -AAAATAAT
33463111 GAATTAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
10 3 0.12
11 12 0.46
12 11 0.42
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (11 bp):
AAAATAATATT
Found at i:33465500 original size:264 final size:265
Alignment explanation
Indices: 33465024--33465946 Score: 1478
Period size: 264 Copynumber: 3.5 Consensus size: 265
33465014 GGGGGATAAG
* * * * *
33465024 ATTAGTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCCGTCACCTTCGATCTACT
1 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTACT
*
33465089 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTACTGACC-AGGGAGAT
66 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGACCTAGGGAGAT
* * *
33465153 AGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGACATCTTCAATCT
131 AGAATTACTGGCTTCAATGTACTCCACTGTAATCACAGGGAGGTAAAATCCGCCATATTCAATCT
* * * * * *
33465218 ACTCCACTACTACTTAGGGAGATGAGATCTTAAATCTTCAATCTATTCCACTGTTGCACAGGGAA
196 GCTCCACTAATGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGAA
33465283 GTAGA
261 GTAGA
33465288 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTACT
1 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTACT
* *
33465353 CCACTACTACTTAGGGAGATGAGATCT-TAAATCTTCAATCTATTCCACTGCTG-CCTAGGGAGA
66 CCACTACTGCTTAGGGAGATAAGATCTGT-AATCTTCAATCTATTCCACTGCTGACCTAGGGAGA
* * * *
33465416 TAGAATTACTGGCTTCAATGTACTCCATTGTAATCACAGTGAGGTAAAATTCGCCATATTCTATC
130 TAGAATTACTGGCTTCAATGTACTCCACTGTAATCACAGGGAGGTAAAATCCGCCATATTCAATC
33465481 TGCTCCACTAATGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGA
195 TGCTCCACTAATGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGA
33465546 AGTAGA
260 AGTAGA
* * * *
33465552 ATTACTGGCTTCAATGTATTCCACTGTAACCATAGGGAGGTAAAATCTGCCATCGTCGATCTACT
1 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTACT
* *
33465617 CCACTACTGCTTATGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG-CCCAGGGAGAT
66 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGACCTAGGGAGAT
* *
33465681 AGAATTATTGGCTTCAATGTACTCCACTGTAATCACAGGGAGGTAAAATCCGCCATATTCGATCT
131 AGAATTACTGGCTTCAATGTACTCCACTGTAATCACAGGGAGGTAAAATCCGCCATATTCAATCT
33465746 GCTCCACTAATGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGAA
196 GCTCCACTAATGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGAA
33465811 GTAGA
261 GTAGA
*** * *
33465816 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTTTCATTTTCGGTCTACT
1 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTACT
* *
33465881 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCT-GGGAGAT
66 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGACCTAGGGAGAT
33465945 AG
131 AG
33465947 GACTAGTGGC
Statistics
Matches: 610, Mismatches: 45, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
263 3 0.00
264 604 0.99
265 3 0.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (265 bp):
ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTACT
CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGACCTAGGGAGAT
AGAATTACTGGCTTCAATGTACTCCACTGTAATCACAGGGAGGTAAAATCCGCCATATTCAATCT
GCTCCACTAATGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGAA
GTAGA
Found at i:33465958 original size:132 final size:132
Alignment explanation
Indices: 33465024--33465946 Score: 1343
Period size: 132 Copynumber: 7.0 Consensus size: 132
33465014 GGGGGATAAG
* * * * *
33465024 ATTAGTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCCGTCACCTTCGATCTACT
1 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTACT
* *
33465089 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTACTGACCAGGGAGATA
66 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATA
33465154 GA
131 GA
* *
33465156 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGACATCTTCAATCTACT
1 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTACT
* * * *
33465221 CCACTACTACTTAGGGAGATGAGATCT-TAAATCTTCAATCTATTCCACTGTTGCACAGGGA-AG
66 CCACTACTGCTTAGGGAGATAAGATCTGT-AATCTTCAATCTATTCCACTGCTGCCCAGGGAGA-
33465284 TAGA
129 TAGA
33465288 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTACT
1 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTACT
* * *
33465353 CCACTACTACTTAGGGAGATGAGATCT-TAAATCTTCAATCTATTCCACTGCTGCCTAGGGAGAT
66 CCACTACTGCTTAGGGAGATAAGATCTGT-AATCTTCAATCTATTCCACTGCTGCCCAGGGAGAT
33465417 AGA
130 AGA
* * * * * * *
33465420 ATTACTGGCTTCAATGTACTCCATTGTAATCACAGTGAGGTAAAATTCGCCATATTCTATCTGCT
1 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTACT
* * *
33465485 CCACTAATGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGA-AGT
66 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAGA-T
33465549 AGA
130 AGA
* * * *
33465552 ATTACTGGCTTCAATGTATTCCACTGTAACCATAGGGAGGTAAAATCTGCCATCGTCGATCTACT
1 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTACT
*
33465617 CCACTACTGCTTATGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATA
66 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATA
33465682 GA
131 GA
* * * *
33465684 ATTATTGGCTTCAATGTACTCCACTGTAATCACAGGGAGGTAAAATCCGCCATATTCGATCTGCT
1 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTACT
* * *
33465749 CCACTAATGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGA-AGT
66 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAGA-T
33465813 AGA
130 AGA
*** * *
33465816 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTTTCATTTTCGGTCTACT
1 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTACT
* * * *
33465881 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCTGGGAGATA
66 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATA
33465946 G
131 G
33465947 GACTAGTGGC
Statistics
Matches: 711, Mismatches: 72, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
131 4 0.01
132 704 0.99
133 3 0.00
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (132 bp):
ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTACT
CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGGAGATA
GA
Found at i:33466012 original size:396 final size:394
Alignment explanation
Indices: 33465024--33466074 Score: 1350
Period size: 396 Copynumber: 2.7 Consensus size: 394
33465014 GGGGGATAAG
* * * * **
33465024 ATTAGTGGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCCGTCACCTTCGATCTACT
1 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCATATTCGATCTACT
*
33465089 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTACTGACCAGGGAGATA
66 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGACCAGGGAGATA
* * *
33465154 GAATTACTGGCTTCAATGTACTCCACTGTAACCAC-AGGGAGGTAAAATCCGACATCTTCAATCT
131 GAATTACTGGCTTCAATGTATTCCAC-GT-ACC-CTAGGGAGGTAAAATTCGCCATCTTCAATCT
* * *
33465218 ACTCCACTACTACTTAGGGAGATGAGATCT-TAAATCTTCAATCTATTCCACTGTTGCACAGGGA
193 ACTCCACTACTGCTTAGGGAGATAAGATCTGT-AATCTTCAATCTATTCCACTGCTGCACAGGGA
*
33465282 AGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATCTTCGA
257 AGTAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATATTCGA
* * * *
33465347 TCTACTCCACTACTACTTAGGGAGATGAGATCTTAAATCTTCAATCTATTCCACTGCTGCCTAGG
322 TCTACTCCACTAATACTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGG
33465412 GAGATAGA
387 GAGATAGA
* * * * * *
33465420 ATTACTGGCTTCAATGTACTCCATTGTAATCACAGTGAGGTAAAAT-TCGCCATATTCTATCTGC
1 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCT-GTCATATTCGATCTAC
* * * *
33465484 TCCACTAATGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCAGGGA-AG
65 TCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGACCAGGGAGA-
* * *
33465548 TAGAATTACTGGCTTCAATGTATTCCACTGTAACCATAGGGAGGTAAAA-TCTGCCATCGTCGAT
129 TAGAATTACTGGCTTCAATGTATTCCAC-GT-ACCCTAGGGAGGTAAAATTC-GCCATCTTCAAT
* *
33465612 CTACTCCACTACTGCTTATGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCCCAGGG
191 CTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCACAGGG
* *
33465677 -AGATAGAATTATTGGCTTCAATGTACTCCACTGTAATCACAGGGAGGTAAAATCCGCCATATTC
256 AAG-TAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATATTC
* * *
33465741 GATCTGCTCCACTAATGCTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGTTGCCCA
320 GATCTACTCCACTAATACTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCA
33465806 GGGA-AGTAGA
385 GGGAGA-TAGA
* * *
33465816 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTTTCATTTTCGGTCTACT
1 ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCATATTCGATCTACT
* * *
33465881 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTATCCCACTGCTGACCTGGGAGATA
66 CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGACCAGGGAGATA
* * * * * ** *
33465946 GGACTAGTGGCTTAAATTTGT-TTCC-C-TACTCCTGGGGGAACATAAAATTCGCCTTCTTCAAT
131 GAATTACTGGCTTCAA--TGTATTCCACGTAC-CCT-AGGG-AGGTAAAATTCGCCATCTTCAAT
* * * * * *
33466008 CTACTCCACTACTGCTTAGGGAGATAAGATTTGTAGT-TTCCAACCTATTCTACTGCTACTCAGG
191 CTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTT-CAATCTATTCCACTGCTGCACAGG
33466072 GAA
255 GAA
33466075 ATAAGACTTG
Statistics
Matches: 566, Mismatches: 72, Indels: 33
0.84 0.11 0.05
Matches are distributed among these distances:
393 2 0.00
394 3 0.01
395 10 0.02
396 538 0.95
397 10 0.02
398 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (394 bp):
ATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGTCATATTCGATCTACT
CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGACCAGGGAGATA
GAATTACTGGCTTCAATGTATTCCACGTACCCTAGGGAGGTAAAATTCGCCATCTTCAATCTACT
CCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGCACAGGGAAGTA
GAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCGCCATATTCGATCTA
CTCCACTAATACTTAGGGAGATAAGATCTGAAATCTTCAATCTATTCCACTGCTGCCCAGGGAGA
TAGA
Found at i:33466176 original size:131 final size:131
Alignment explanation
Indices: 33465870--33466480 Score: 825
Period size: 131 Copynumber: 4.6 Consensus size: 131
33465860 ATCTTTCATT
* * * * *
33465870 TTCGGTCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTT-CAACCTATCCCACTGCTG
1 TTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGT-TTCCAACCTATTCCACTGCTG
* * * * * * *
33465934 AC-CTGGGAGATAGGACTAGTGGCTTAAATTTGTTTCCCTACTCCTGGGGGAACATAAAATTCGC
65 -CTCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCT-GGGGAAGATAAGATTCAC
*
33465998 CTTC
128 CGTC
* * * * * *
33466002 TTCAATCTACTCCACTACTGCTTAGGGAGATAAGATTTGTAGTTTCCAACCTATTCTACTGCTAC
1 TTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTGC
* **
33466067 TCAGGGAAATAAGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTTGCCGT
66 TCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCGT
33466132 C
131 C
* * *
33466133 TTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTGCAACCTATTCCACTACTGT
1 TTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTGC
33466198 TCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCGT
66 TCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCGT
33466263 C
131 C
* * *
33466264 TTCGATCTGCTCCACTATTGCTTAAGGAGATAAGATATGTAGTTTCCAACCTATCCCACTGCTGC
1 TTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTGC
* * * *
33466329 TCAAGGAAATAAGACTTGTGGCTTAAATCTATTTCCCTACTCC-GGAGGAAGATAGGATTCACCG
66 TCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGG-GGAAGATAAGATTCACCG
33466393 TC
130 TC
* *
33466395 TTCAATCTGCTCCACTATTGCTTAGAGAGATAAGATCTGTAGTTTCCCAACCTATTCCACTGCTG
1 TTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTT-CCAACCTATTCCACTGCT-
*
33466460 GC-CAGGGATATAGGACTTGTG
64 GCTCAGGGAAATAGGACTTGTG
33466481 ATTTCACCGA
Statistics
Matches: 428, Mismatches: 46, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
130 2 0.00
131 299 0.70
132 125 0.29
133 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.31
Consensus pattern (131 bp):
TTCGATCTGCTCCACTATTGCTTAGGGAGATAAGATCTGTAGTTTCCAACCTATTCCACTGCTGC
TCAGGGAAATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCGT
C
Found at i:33468727 original size:38 final size:38
Alignment explanation
Indices: 33468637--33468730 Score: 116
Period size: 38 Copynumber: 2.5 Consensus size: 38
33468627 GTGAATCACG
* * * * * *
33468637 TGTGGCATATTCTAAAATGGCGTATTTGGTGAGGCCCA
1 TGTGGCGTATTCTATAATGGCATATTCGATGAAGCCCA
* *
33468675 TGTGGTGTATTCTATAATGGCATGTTCGATGAAGCCCA
1 TGTGGCGTATTCTATAATGGCATATTCGATGAAGCCCA
33468713 TGTGGCGTATTCTATAAT
1 TGTGGCGTATTCTATAAT
33468731 ATTTGTGTGA
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 47 1.00
ACGTcount: A:0.23, C:0.15, G:0.27, T:0.35
Consensus pattern (38 bp):
TGTGGCGTATTCTATAATGGCATATTCGATGAAGCCCA
Found at i:33470029 original size:115 final size:116
Alignment explanation
Indices: 33469816--33470047 Score: 430
Period size: 115 Copynumber: 2.0 Consensus size: 116
33469806 TAAAAATAGC
33469816 CAGGGACTAATTTGAAACAATTCTGGAAGTTTAGCATGTAACAACCCGACCCGTGTCCGTTGCCA
1 CAGGGACTAA-TTGAAACAATTCTGGAAGTTTAGCATGTAACAACCCGACCCGTGTCCGTTGCCA
33469881 GATTAGAGTAACGAGGCATTACCGATCAAAAACCCAACTCAAATTTTTTTTT
65 GATTAGAGTAACGAGGCATTACCGATCAAAAACCCAACTCAAATTTTTTTTT
33469933 CAGGGACTAA-TGAAACAATTCTGGAAGTTTAGCATGTAACAACCCGACCCGTGTCCGTTGCCAG
1 CAGGGACTAATTGAAACAATTCTGGAAGTTTAGCATGTAACAACCCGACCCGTGTCCGTTGCCAG
**
33469997 ATTAGAGTAACGAGGCATTACCGATCTCAAACCCAACTCAAATTTTTTTTT
66 ATTAGAGTAACGAGGCATTACCGATCAAAAACCCAACTCAAATTTTTTTTT
33470048 AGATTATACC
Statistics
Matches: 113, Mismatches: 2, Indels: 2
0.97 0.02 0.02
Matches are distributed among these distances:
115 103 0.91
117 10 0.09
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (116 bp):
CAGGGACTAATTGAAACAATTCTGGAAGTTTAGCATGTAACAACCCGACCCGTGTCCGTTGCCAG
ATTAGAGTAACGAGGCATTACCGATCAAAAACCCAACTCAAATTTTTTTTT
Found at i:33476481 original size:121 final size:122
Alignment explanation
Indices: 33476256--33476499 Score: 481
Period size: 121 Copynumber: 2.0 Consensus size: 122
33476246 CTCACATTAC
33476256 CCGTATTCCTGGGTGGTCTACCCCGAGCTGCTGTGTTGCCCGATCTCGTATTCTGAGTCGAATTT
1 CCGTATTCCTGGGTGGTCTACCCCGAGCTGCTGTGTTGCCCGATCTCGTATTCTGAGTCGAATTT
33476321 CGACCCGCAAACTCTTGGCACTCCTGAATAAAATGATCTTTCGATCCACATTTATAG
66 CGACCCGCAAACTCTTGGCACTCCTGAATAAAATGATCTTTCGATCCACATTTATAG
33476378 CCGTATTCCT-GGTGGTCTACCCCGAGCTGCTGTGTTGCCCGATCTCGTATTCTGAGTCGAATTT
1 CCGTATTCCTGGGTGGTCTACCCCGAGCTGCTGTGTTGCCCGATCTCGTATTCTGAGTCGAATTT
33476442 CGACCCGCAAACTCTTGGCACTCCTGAATAAAATGATCTTTCGATCCACATTTATAG
66 CGACCCGCAAACTCTTGGCACTCCTGAATAAAATGATCTTTCGATCCACATTTATAG
33476499 C
1 C
33476500 AAACTCGATT
Statistics
Matches: 122, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
121 112 0.92
122 10 0.08
ACGTcount: A:0.20, C:0.28, G:0.20, T:0.31
Consensus pattern (122 bp):
CCGTATTCCTGGGTGGTCTACCCCGAGCTGCTGTGTTGCCCGATCTCGTATTCTGAGTCGAATTT
CGACCCGCAAACTCTTGGCACTCCTGAATAAAATGATCTTTCGATCCACATTTATAG
Found at i:33478174 original size:23 final size:23
Alignment explanation
Indices: 33478147--33478557 Score: 189
Period size: 23 Copynumber: 17.6 Consensus size: 23
33478137 TTCACACCAA
33478147 AATTTGGACAGCATATATACAAC
1 AATTTGGACAGCATATATACAAC
*
33478170 AATTTGGGCAGCATATATACAAC
1 AATTTGGACAGCATATATACAAC
* * * *
33478193 AAAATT-GAGCAGCATTTTTACACCAA
1 -AATTTGGA-CAGCATATATACA--AC
*
33478219 AAATTGGACAGCATATATACAAC
1 AATTTGGACAGCATATATACAAC
* * * *
33478242 AAATTGGGCAGCATATATATACC
1 AATTTGGACAGCATATATACAAC
* * * * * *
33478265 AAATT-AAGCAACATTTTTACATCAA
1 AATTTGGA-CAGCATATATACA--AC
*
33478290 AATTT-GACAGCATATATACGAC
1 AATTTGGACAGCATATATACAAC
**
33478312 AATTTAGG-CAGCATATATTTAAC
1 AATTT-GGACAGCATATATACAAC
* * * *
33478335 AAATTGAGGA-A-CATTTTTACATC
1 -AATT-TGGACAGCATATATACAAC
*
33478358 AAAATTGGACAGCATATATACAAC
1 -AATTTGGACAGCATATATACAAC
* * *
33478382 AATTTAGG-TAGCATATATATACC
1 AATTT-GGACAGCATATATACAAC
* * * * *
33478405 AAATT-GAGCAACATTTTTACATC
1 AATTTGGA-CAGCATATATACAAC
*
33478428 AAATTGGACAGCATATATACAAC
1 AATTTGGACAGCATATATACAAC
*
33478451 AATTTAGG-CAGCATATATATAAC
1 AATTT-GGACAGCATATATACAAC
* * * *
33478474 AATTT-GAGCAACATTTTTACATC
1 AATTTGGA-CAGCATATATACAAC
* * *
33478497 AAAATTGGACATCATATATATAAC
1 -AATTTGGACAGCATATATACAAC
*
33478521 AATTTAGG-CAGCATAAATACAAC
1 AATTT-GGACAGCATATATACAAC
*
33478544 GAA-TTGGGCAGCAT
1 -AATTTGGACAGCAT
33478558 TTAAGCATCA
Statistics
Matches: 288, Mismatches: 73, Indels: 54
0.69 0.18 0.13
Matches are distributed among these distances:
21 2 0.01
22 11 0.04
23 184 0.64
24 65 0.23
25 23 0.08
26 3 0.01
ACGTcount: A:0.43, C:0.16, G:0.13, T:0.28
Consensus pattern (23 bp):
AATTTGGACAGCATATATACAAC
Found at i:33478559 original size:139 final size:140
Alignment explanation
Indices: 33478107--33478535 Score: 621
Period size: 139 Copynumber: 3.0 Consensus size: 140
33478097 TCAATTTGAA
* * * *
33478107 CAGCATTTATATACCAAACT-AG-ATAGCATTTTCACACCAAAATTTGGACAGCATATATACAAC
1 CAGCATATATATACCAAATTGAGCA-A-CATTTTTACATCAAAA-TTGGACAGCATATATACAAC
* * * *
33478170 AATTTGGGCAGCATATATACAACAAAATTGAGCAGCATTTTTACACCAAAAATTGGACAGCATAT
63 AATTTAGGCAGCATATATATAAC-AAATTGAGCAACATTTTTACATC-AAAATTGGACAGCATAT
* *
33478235 ATACAACAAATTGGG
126 ATACAACAATTTAGG
* * *
33478250 CAGCATATATATACCAAATTAAGCAACATTTTTACATCAAAATTTGACAGCATATATACGACAAT
1 CAGCATATATATACCAAATTGAGCAACATTTTTACATCAAAATTGGACAGCATATATACAACAAT
* *
33478315 TTAGGCAGCATATATTTAACAAATTGAGGAACATTTTTACATCAAAATTGGACAGCATATATACA
66 TTAGGCAGCATATATATAACAAATTGAGCAACATTTTTACATCAAAATTGGACAGCATATATACA
33478380 ACAATTTAGG
131 ACAATTTAGG
*
33478390 TAGCATATATATACCAAATTGAGCAACATTTTTACATC-AAATTGGACAGCATATATACAACAAT
1 CAGCATATATATACCAAATTGAGCAACATTTTTACATCAAAATTGGACAGCATATATACAACAAT
* * *
33478454 TTAGGCAGCATATATATAACAATTTGAGCAACATTTTTACATCAAAATTGGACATCATATATATA
66 TTAGGCAGCATATATATAACAAATTGAGCAACATTTTTACATCAAAATTGGACAGCATATATACA
33478519 ACAATTTAGG
131 ACAATTTAGG
33478529 CAGCATA
1 CAGCATA
33478536 AATACAACGA
Statistics
Matches: 260, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
139 100 0.38
140 66 0.25
141 20 0.08
142 38 0.15
143 32 0.12
144 3 0.01
145 1 0.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (140 bp):
CAGCATATATATACCAAATTGAGCAACATTTTTACATCAAAATTGGACAGCATATATACAACAAT
TTAGGCAGCATATATATAACAAATTGAGCAACATTTTTACATCAAAATTGGACAGCATATATACA
ACAATTTAGG
Found at i:33478571 original size:70 final size:70
Alignment explanation
Indices: 33478133--33478559 Score: 604
Period size: 70 Copynumber: 6.1 Consensus size: 70
33478123 AACTAGATAG
* * * *
33478133 CATTTTCACACCAAAATTTGGACAGCATATATACAACAATTTGGGCAGCATATATACAACAAAAT
1 CATTTTTACATCAAAA-TTGGACAGCATATATACAACAATTTAGGCAGCATATATATAAC-AAAT
*
33478198 TGAGCAG
64 TGAGCAA
* * * *
33478205 CATTTTTACACCAAAAATTGGACAGCATATATACAACAAATTGGGCAGCATATATATACCAAATT
1 CATTTTTACATC-AAAATTGGACAGCATATATACAACAATTTAGGCAGCATATATATAACAAATT
*
33478270 AAGCAA
65 GAGCAA
* * *
33478276 CATTTTTACATCAAAATTTGACAGCATATATACGACAATTTAGGCAGCATATATTTAACAAATTG
1 CATTTTTACATCAAAATTGGACAGCATATATACAACAATTTAGGCAGCATATATATAACAAATTG
*
33478341 AGGAA
66 AGCAA
* *
33478346 CATTTTTACATCAAAATTGGACAGCATATATACAACAATTTAGGTAGCATATATATACCAAATTG
1 CATTTTTACATCAAAATTGGACAGCATATATACAACAATTTAGGCAGCATATATATAACAAATTG
33478411 AGCAA
66 AGCAA
*
33478416 CATTTTTACATC-AAATTGGACAGCATATATACAACAATTTAGGCAGCATATATATAACAATTTG
1 CATTTTTACATCAAAATTGGACAGCATATATACAACAATTTAGGCAGCATATATATAACAAATTG
33478480 AGCAA
66 AGCAA
* * * * *
33478485 CATTTTTACATCAAAATTGGACATCATATATATAACAATTTAGGCAGCATAAATACAACGAATTG
1 CATTTTTACATCAAAATTGGACAGCATATATACAACAATTTAGGCAGCATATATATAACAAATTG
* *
33478550 GGCAG
66 AGCAA
33478555 CATTT
1 CATTT
33478560 AAGCATCAAA
Statistics
Matches: 321, Mismatches: 32, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
69 66 0.21
70 180 0.56
71 20 0.06
72 51 0.16
73 4 0.01
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (70 bp):
CATTTTTACATCAAAATTGGACAGCATATATACAACAATTTAGGCAGCATATATATAACAAATTG
AGCAA
Found at i:33479007 original size:28 final size:28
Alignment explanation
Indices: 33478966--33479045 Score: 110
Period size: 28 Copynumber: 2.9 Consensus size: 28
33478956 CGAAAATATT
*
33478966 TAATAAGT-TCGCACACTTAGTGCTTAA
1 TAATAAATCTCGCACACTTAGTGCTTAA
*
33478993 TAATAAATCTCGCACACTTAGTGCTTTA
1 TAATAAATCTCGCACACTTAGTGCTTAA
*
33479021 CAATTAAA-CTCGCACACTTAGTGCT
1 TAA-TAAATCTCGCACACTTAGTGCT
33479046 AATCTCATTA
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
27 7 0.15
28 37 0.77
29 4 0.08
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.33
Consensus pattern (28 bp):
TAATAAATCTCGCACACTTAGTGCTTAA
Found at i:33480337 original size:30 final size:30
Alignment explanation
Indices: 33480294--33480360 Score: 107
Period size: 30 Copynumber: 2.2 Consensus size: 30
33480284 ATTTCAGGGG
* *
33480294 TCACACACTCGTGTGGCCAAGCCGTGTGCC
1 TCACACGCCCGTGTGGCCAAGCCGTGTGCC
*
33480324 TCACACGCCCGTGTGGCCAAGTCGTGTGCC
1 TCACACGCCCGTGTGGCCAAGCCGTGTGCC
33480354 TCACACG
1 TCACACG
33480361 ATTGAGACAC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.16, C:0.37, G:0.27, T:0.19
Consensus pattern (30 bp):
TCACACGCCCGTGTGGCCAAGCCGTGTGCC
Found at i:33481362 original size:44 final size:44
Alignment explanation
Indices: 33481311--33481397 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
33481301 TCATATTTCA
33481311 TTTCTCATCTCATAATCATTTCTCATATTTGT-CATTTCAATATT
1 TTTCTCATCTCATAATCATTTCTCATATTT-TCCATTTCAATATT
* *
33481355 TTTCTCATCTCATAATCATTTCTCATCTTTTCCATTTCGATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTTCCATTTCAATAT
33481398 CAATCACATA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
43 1 0.03
44 39 0.98
ACGTcount: A:0.23, C:0.23, G:0.02, T:0.52
Consensus pattern (44 bp):
TTTCTCATCTCATAATCATTTCTCATATTTTCCATTTCAATATT
Found at i:33486329 original size:6 final size:6
Alignment explanation
Indices: 33486318--33486373 Score: 50
Period size: 6 Copynumber: 10.0 Consensus size: 6
33486308 CGTCGATTAG
*
33486318 TTATTT TTA--T TTAGTT TTATGTT TTA--T TTATTT TTA-TT TTATTT
1 TTATTT TTATTT TTATTT TTAT-TT TTATTT TTATTT TTATTT TTATTT
*
33486362 TTATTG TTATTT
1 TTATTT TTATTT
33486374 GTTTTTCTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 12
0.73 0.05 0.21
Matches are distributed among these distances:
4 8 0.20
5 5 0.12
6 23 0.56
7 5 0.12
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (6 bp):
TTATTT
Found at i:33486347 original size:11 final size:10
Alignment explanation
Indices: 33486318--33486366 Score: 50
Period size: 10 Copynumber: 5.1 Consensus size: 10
33486308 CGTCGATTAG
33486318 TTATTTTTAT
1 TTATTTTTAT
*
33486328 TTAGTTTTA-
1 TTATTTTTAT
*
33486337 -T-GTTTTAT
1 TTATTTTTAT
33486345 TTATTTTTATT
1 TTATTTTTA-T
33486356 TTATTTTTAT
1 TTATTTTTAT
33486366 T
1 T
33486367 GTTATTTGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
7 6 0.18
8 1 0.03
9 1 0.03
10 15 0.45
11 10 0.30
ACGTcount: A:0.18, C:0.00, G:0.04, T:0.78
Consensus pattern (10 bp):
TTATTTTTAT
Found at i:33486356 original size:27 final size:27
Alignment explanation
Indices: 33486318--33486384 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
33486308 CGTCGATTAG
*
33486318 TTATTTTTA-TTTAGTTTTATGTTTTAT
1 TTATTTTTATTTTAGTTTTAT-TGTTAT
*
33486345 TTATTTTTATTTTATTTTTATTGTTAT
1 TTATTTTTATTTTAGTTTTATTGTTAT
* *
33486372 TTGTTTTTCTTTT
1 TTATTTTTATTTT
33486385 TTGGATTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 25 0.71
28 10 0.29
ACGTcount: A:0.15, C:0.01, G:0.06, T:0.78
Consensus pattern (27 bp):
TTATTTTTATTTTAGTTTTATTGTTAT
Found at i:33486364 original size:17 final size:16
Alignment explanation
Indices: 33486318--33486373 Score: 67
Period size: 17 Copynumber: 3.4 Consensus size: 16
33486308 CGTCGATTAG
*
33486318 TTATTTTTATTTAGTT
1 TTATTTTTATTTATTT
33486334 TTATGTTTTATTTATTT
1 TTAT-TTTTATTTATTT
* *
33486351 TTATTTTATTTTTATTG
1 TTATTTT-TATTTATTT
33486368 TTATTT
1 TTATTT
33486374 GTTTTTCTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
16 7 0.20
17 28 0.80
ACGTcount: A:0.18, C:0.00, G:0.05, T:0.77
Consensus pattern (16 bp):
TTATTTTTATTTATTT
Found at i:33486429 original size:50 final size:52
Alignment explanation
Indices: 33486340--33486438 Score: 116
Period size: 50 Copynumber: 1.9 Consensus size: 52
33486330 AGTTTTATGT
* * * *
33486340 TTTATTTATTTTTATTTTATTTTTATTGTTA-TTTGTTTTT-CTTTTTTGGA
1 TTTATATATTTTTAATGTATTTTTACTGTTATTTTGTTTTTACTTTTTTGGA
33486390 TTTATATATTTTTAATGTA-TTTTACTGTTATTGCTT-TTTTTACTTTTTT
1 TTTATATATTTTTAATGTATTTTTACTGTTATT--TTGTTTTTACTTTTTT
33486439 CTATTTGTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
49 10 0.24
50 17 0.41
51 5 0.12
52 9 0.22
ACGTcount: A:0.16, C:0.04, G:0.07, T:0.73
Consensus pattern (52 bp):
TTTATATATTTTTAATGTATTTTTACTGTTATTTTGTTTTTACTTTTTTGGA
Found at i:33493394 original size:9 final size:9
Alignment explanation
Indices: 33493380--33493411 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
33493370 NNNNNNNNNG
33493380 GGGGGGGGA
1 GGGGGGGGA
33493389 GGGGGGGG-
1 GGGGGGGGA
33493397 GGGGGGGGA
1 GGGGGGGGA
33493406 GGGGGG
1 GGGGGG
33493412 ACTTTTTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.06, C:0.00, G:0.94, T:0.00
Consensus pattern (9 bp):
GGGGGGGGA
Found at i:33493401 original size:17 final size:17
Alignment explanation
Indices: 33493379--33493411 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
33493369 NNNNNNNNNN
33493379 GGGGGGGGGAGGGGGGG
1 GGGGGGGGGAGGGGGGG
33493396 GGGGGGGGGAGGGGGG
1 GGGGGGGGGAGGGGGG
33493412 ACTTTTTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.00, G:0.94, T:0.00
Consensus pattern (17 bp):
GGGGGGGGGAGGGGGGG
Found at i:33514177 original size:66 final size:66
Alignment explanation
Indices: 33514066--33514211 Score: 163
Period size: 66 Copynumber: 2.2 Consensus size: 66
33514056 ATAAAGAATT
* * * * * *
33514066 TGATGGGGAGGATGATGTTGAATGGGTAGAAGCTGCTGGAAAGGGTGATG-TTAAAGGTGTAGAA
1 TGATAGGGAGGGTGATGTTGAAGGGGTAAAAGCTGCTGAAAAGGGTAATGTTTAAAGG-GTAGAA
33514130 GC
65 GC
* *
33514132 T-ACTAGGGAGGGTGATGTTGAAGGGGTAAAAGCT-TTTAAAGAGGGTAATGTTTAAAGGGTAGA
1 TGA-TAGGGAGGGTGATGTTGAAGGGGTAAAAGCTGCTGAAA-AGGGTAATGTTTAAAGGGTAGA
33514195 AGC
64 AGC
*
33514198 TGATAGAGAGGGTG
1 TGATAGGGAGGGTG
33514212 TGACTGCTGC
Statistics
Matches: 67, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
65 4 0.06
66 55 0.82
67 8 0.12
ACGTcount: A:0.31, C:0.04, G:0.40, T:0.25
Consensus pattern (66 bp):
TGATAGGGAGGGTGATGTTGAAGGGGTAAAAGCTGCTGAAAAGGGTAATGTTTAAAGGGTAGAAG
C
Found at i:33514208 original size:33 final size:33
Alignment explanation
Indices: 33514073--33514211 Score: 129
Period size: 33 Copynumber: 4.2 Consensus size: 33
33514063 ATTTGATGGG
* * * *
33514073 GAGGATGATGTTGAATGGGTAGAAGCTGCTGGA
1 GAGGGTGATGTTGAAAGGGTAGAAGCTGATAGA
* *
33514106 AAGGGTGATGTT-AAAGGTGTAGAAGCT-ACTAGG
1 GAGGGTGATGTTGAAAGG-GTAGAAGCTGA-TAGA
* * ** *
33514139 GAGGGTGATGTTGAAGGGGTAAAAGCTTTTAAA
1 GAGGGTGATGTTGAAAGGGTAGAAGCTGATAGA
* *
33514172 GAGGGTAATGTTTAAAGGGTAGAAGCTGATAGA
1 GAGGGTGATGTTGAAAGGGTAGAAGCTGATAGA
33514205 GAGGGTG
1 GAGGGTG
33514212 TGACTGCTGC
Statistics
Matches: 82, Mismatches: 20, Indels: 8
0.75 0.18 0.07
Matches are distributed among these distances:
32 4 0.05
33 74 0.90
34 4 0.05
ACGTcount: A:0.32, C:0.04, G:0.40, T:0.24
Consensus pattern (33 bp):
GAGGGTGATGTTGAAAGGGTAGAAGCTGATAGA
Found at i:33523138 original size:21 final size:21
Alignment explanation
Indices: 33523077--33523140 Score: 110
Period size: 21 Copynumber: 3.0 Consensus size: 21
33523067 TTCGGGTGGA
*
33523077 TCAGCTCTTGTGAGCTTCTAT
1 TCAGCTCTTGTGAGCTTCTGT
33523098 TCAGCTCTTGTGAGCTTCTGT
1 TCAGCTCTTGTGAGCTTCTGT
*
33523119 TCAGCTCTTTTGAGCTTCTGT
1 TCAGCTCTTGTGAGCTTCTGT
33523140 T
1 T
33523141 GGCGTGTTCG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.11, C:0.23, G:0.20, T:0.45
Consensus pattern (21 bp):
TCAGCTCTTGTGAGCTTCTGT
Found at i:33526203 original size:5 final size:5
Alignment explanation
Indices: 33526193--33526218 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
33526183 CTGCCCTATC
33526193 TCCCT TCCCT TCCCT TCCCT TCCCT T
1 TCCCT TCCCT TCCCT TCCCT TCCCT T
33526219 AAACACGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (5 bp):
TCCCT
Found at i:33561933 original size:18 final size:18
Alignment explanation
Indices: 33561892--33561938 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
33561882 AAAATTCAAA
* *
33561892 AAAAATAATAAAGAATTT
1 AAAAATTATAAAAAATTT
33561910 AAAAATTATAAAAAATGTT
1 AAAAATTATAAAAAAT-TT
33561929 -AAAATTATAA
1 AAAAATTATAA
33561939 TTTTTTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 24 0.92
19 2 0.08
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (18 bp):
AAAAATTATAAAAAATTT
Found at i:33562345 original size:17 final size:17
Alignment explanation
Indices: 33562323--33562362 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
33562313 TAGTAAAAAT
33562323 ATAATTTTATTAT-TTTA
1 ATAATTTTA-TATCTTTA
33562340 ATAA-TTTATATCTTTA
1 ATAATTTTATATCTTTA
33562356 A-AATTTT
1 ATAATTTT
33562363 TGAAGAGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 5 0.24
16 12 0.57
17 4 0.19
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (17 bp):
ATAATTTTATATCTTTA
Found at i:33565461 original size:263 final size:263
Alignment explanation
Indices: 33564989--33565484 Score: 753
Period size: 263 Copynumber: 1.9 Consensus size: 263
33564979 TGTCTCTATA
* * * *
33564989 GAGCAGCATGAAGAAAAAGGAATATTAGTTCTTCGGAACAAGGATCAAAAGATAGCACAAAGAAT
1 GAGCAGCATGAAGAAAAAAGAATATTAGTTCTTCAGAAAAAGGATCAAAAGATAGCACAAAGAAG
* *
33565054 GGAGTGTATTAGTATAAGGTGCATAAATGTGTTAGATGATGTGTGGAGAATTGCATGATGTGTAA
66 GGAGTGTAATAGTATAAGGTGCATAAATGTGTTAAATGATGTGTGGAGAATTGCATGATGTGTAA
* * *
33565119 AAGGTATGTGAAATGGTTATGAAAGTTGTTCTATAATGTGGCATACCAATAGAATAGTAGTGATG
131 AAAGCATGTGAAATGGTTATGAAAGTTGTTCTATAATGTGGCATACCAATAGAATAGTAGTAATG
* *
33565184 TGTGCCCGTCAAATGTTGGTCTCTGATAGCAGATAGTGTCCACCAATGGGTTGTATACTGGCTTT
196 TGTGCCCGTCAAATGTCGGTCTCTAATAGCAGATAGTGTCCACCAATGGGTTGTATACTGGCTTT
33565249 ATG
261 ATG
* ** * *
33565252 GAGCGGCATGAAGAAAAAAGAATATTAGTTCTTCAGAAAAAGGATCGGAAGCTAGCACAAGGAAG
1 GAGCAGCATGAAGAAAAAAGAATATTAGTTCTTCAGAAAAAGGATCAAAAGATAGCACAAAGAAG
*
33565317 GGAGTGTAATAGTATAAGGTGCATAGATGTGTTAAATGATGTGTGG-GCAATTGCATGATGTGTA
66 GGAGTGTAATAGTATAAGGTGCATAAATGTGTTAAATGATGTGTGGAG-AATTGCATGATGTGTA
* *
33565381 AAAAGCATGTGAAATGGTTATGAAAGTTGGTT-TATAATGTGTCATACCAATAGAATAGTCGTAA
130 AAAAGCATGTGAAATGGTTATGAAAGTT-GTTCTATAATGTGGCATACCAATAGAATAGTAGTAA
** * *
33565445 TGTGTTTCTGTCAAATGTCGGTCTCTAATAGCGGATAGTG
194 TGTGTGCCCGTCAAATGTCGGTCTCTAATAGCAGATAGTG
33565485 CCTGCAAATG
Statistics
Matches: 208, Mismatches: 23, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
262 1 0.00
263 204 0.98
264 3 0.01
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (263 bp):
GAGCAGCATGAAGAAAAAAGAATATTAGTTCTTCAGAAAAAGGATCAAAAGATAGCACAAAGAAG
GGAGTGTAATAGTATAAGGTGCATAAATGTGTTAAATGATGTGTGGAGAATTGCATGATGTGTAA
AAAGCATGTGAAATGGTTATGAAAGTTGTTCTATAATGTGGCATACCAATAGAATAGTAGTAATG
TGTGCCCGTCAAATGTCGGTCTCTAATAGCAGATAGTGTCCACCAATGGGTTGTATACTGGCTTT
ATG
Found at i:33576562 original size:3 final size:3
Alignment explanation
Indices: 33576554--33576578 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
33576544 AAAAAACCCT
33576554 AGA AGA AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA A
33576579 AAGCTAAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:33580210 original size:33 final size:33
Alignment explanation
Indices: 33580158--33580264 Score: 135
Period size: 33 Copynumber: 3.2 Consensus size: 33
33580148 CTGCCAAGAT
**
33580158 AGTAAACATGGAATAGAGATAGTCCACTAGGAC
1 AGTAAACACAGAATAGAGATAGTCCACTAGGAC
* * *
33580191 AGTAAACACAGAATTGAGATAGTCCGC-CGGAGC
1 AGTAAACACAGAATAGAGATAGTCCACTAGGA-C
* *
33580224 AGTAAACACAAAATAGAGATAGTCCCCTAGGAC
1 AGTAAACACAGAATAGAGATAGTCCACTAGGAC
33580257 AGTAAACA
1 AGTAAACA
33580265 TGAAATAAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
32 3 0.05
33 57 0.90
34 3 0.05
ACGTcount: A:0.43, C:0.19, G:0.22, T:0.16
Consensus pattern (33 bp):
AGTAAACACAGAATAGAGATAGTCCACTAGGAC
Found at i:33598751 original size:15 final size:15
Alignment explanation
Indices: 33598731--33598759 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
33598721 TAAGTCCCTG
33598731 AATTTCAAAATTTTA
1 AATTTCAAAATTTTA
33598746 AATTTCAAAATTTT
1 AATTTCAAAATTTT
33598760 CATAATTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (15 bp):
AATTTCAAAATTTTA
Found at i:33605524 original size:14 final size:16
Alignment explanation
Indices: 33605494--33605525 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
33605484 CATTCAATTC
33605494 ATCACTTCATAAACAT
1 ATCACTTCATAAACAT
33605510 ATCA-TTCAT-AACAT
1 ATCACTTCATAAACAT
33605524 AT
1 AT
33605526 TCAATTCTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 5 0.31
16 4 0.25
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.34
Consensus pattern (16 bp):
ATCACTTCATAAACAT
Found at i:33605550 original size:22 final size:21
Alignment explanation
Indices: 33605525--33605567 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
33605515 TCATAACATA
*
33605525 TTCAATTCTCATCACTTGCTAT
1 TTCAAGTCTCAT-ACTTGCTAT
33605547 TTCAAGTCTCATACTTGCTAT
1 TTCAAGTCTCATACTTGCTAT
33605568 CAAATAGCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.23, C:0.26, G:0.07, T:0.44
Consensus pattern (21 bp):
TTCAAGTCTCATACTTGCTAT
Found at i:33606693 original size:21 final size:21
Alignment explanation
Indices: 33606649--33606694 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
33606639 GCCTTTCTCC
* * **
33606649 TTCTTTCTTTCTCTTTTTTTT
1 TTCTTTCATTCTCTGTTTCGT
33606670 TTCTTTCATTCTCTGTTTCGT
1 TTCTTTCATTCTCTGTTTCGT
33606691 TTCT
1 TTCT
33606695 ACACTTGTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.02, C:0.22, G:0.04, T:0.72
Consensus pattern (21 bp):
TTCTTTCATTCTCTGTTTCGT
Found at i:33620020 original size:4 final size:4
Alignment explanation
Indices: 33619998--33620035 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
33619988 TGCAATTGGA
*
33619998 ATGT AGGT ATAGT -TGT ATGT ATGT ATGT ATGT ATGT AT
1 ATGT ATGT AT-GT ATGT ATGT ATGT ATGT ATGT ATGT AT
33620036 AAAAGATATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
3 2 0.07
4 26 0.87
5 2 0.07
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.47
Consensus pattern (4 bp):
ATGT
Found at i:33622862 original size:17 final size:18
Alignment explanation
Indices: 33622822--33622862 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 18
33622812 CTTTTTTCAG
33622822 TTTAGGAGGTTGAATAACAA
1 TTTAGGAGGTTGAAT-A-AA
33622842 TTTAGGAGGTTGAAT-AA
1 TTTAGGAGGTTGAATAAA
33622859 TTTA
1 TTTA
33622863 TAAAGGAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.29
20 15 0.71
ACGTcount: A:0.37, C:0.02, G:0.24, T:0.37
Consensus pattern (18 bp):
TTTAGGAGGTTGAATAAA
Found at i:33625750 original size:27 final size:27
Alignment explanation
Indices: 33625720--33625771 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
33625710 CCCTATATGT
33625720 AATTTAGT-TATCATACCTAATTACTGC
1 AATTTAGTCT-TCATACCTAATTACTGC
* *
33625747 AATTTAGTCTTTATACTTAATTACT
1 AATTTAGTCTTCATACCTAATTACT
33625772 TTTAATTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 21 0.95
28 1 0.05
ACGTcount: A:0.33, C:0.15, G:0.06, T:0.46
Consensus pattern (27 bp):
AATTTAGTCTTCATACCTAATTACTGC
Found at i:33628485 original size:20 final size:20
Alignment explanation
Indices: 33628460--33628497 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
33628450 AAAGTATATT
* *
33628460 AATTTTTTATTAATTGTTTG
1 AATTTTATATGAATTGTTTG
33628480 AATTTTATATGAATTGTT
1 AATTTTATATGAATTGTT
33628498 ACATAAATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.29, C:0.00, G:0.11, T:0.61
Consensus pattern (20 bp):
AATTTTATATGAATTGTTTG
Found at i:33629490 original size:20 final size:20
Alignment explanation
Indices: 33629465--33629507 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
33629455 TTAAGCTAGT
33629465 TAAAGTCT-GTTTTAGTATAA
1 TAAAGTCTAG-TTTAGTATAA
*
33629485 TAAAGTCTAGTTTATTATAA
1 TAAAGTCTAGTTTAGTATAA
33629505 TAA
1 TAA
33629508 CATTGTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 20 0.95
21 1 0.05
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.44
Consensus pattern (20 bp):
TAAAGTCTAGTTTAGTATAA
Found at i:33635473 original size:72 final size:70
Alignment explanation
Indices: 33635397--33635537 Score: 264
Period size: 72 Copynumber: 2.0 Consensus size: 70
33635387 CCAAACTCAT
33635397 ATTTTCCATATATTATAGATTATAGATAAAATATAAAGCTAAAGTGTTTTTTTTTTTTTTTTCAT
1 ATTTTCCATATATTATAGATTATAGATAAAATATAAAGCTAAAGTG--TTTTTTTTTTTTTTCAT
33635462 TTCTAAA
64 TTCTAAA
33635469 ATTTTCCATATATTATAGATTATAGATAAAATATAAAGCTAAAGTGTTTTTTTTTTTTTTCATTT
1 ATTTTCCATATATTATAGATTATAGATAAAATATAAAGCTAAAGTGTTTTTTTTTTTTTTCATTT
33635534 CTAA
66 CTAA
33635538 CTTTTTGGGT
Statistics
Matches: 69, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
70 23 0.33
72 46 0.67
ACGTcount: A:0.35, C:0.07, G:0.07, T:0.51
Consensus pattern (70 bp):
ATTTTCCATATATTATAGATTATAGATAAAATATAAAGCTAAAGTGTTTTTTTTTTTTTTCATTT
CTAAA
Found at i:33641266 original size:23 final size:24
Alignment explanation
Indices: 33641235--33641288 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 24
33641225 TAAATTATAA
*
33641235 AATATTAAAATATTAAAAATAAAT
1 AATATTAAAAAATTAAAAATAAAT
* *
33641259 AATA-TAAAAAATTTAAAATGAAT
1 AATATTAAAAAATTAAAAATAAAT
*
33641282 ATTATTA
1 AATATTA
33641289 TATTTATAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
23 19 0.76
24 6 0.24
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (24 bp):
AATATTAAAAAATTAAAAATAAAT
Found at i:33649410 original size:21 final size:20
Alignment explanation
Indices: 33649371--33649411 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
33649361 AAGCAAAAAC
* *
33649371 AAAAATAAGATAAATAATAA
1 AAAAATAAGACAAACAATAA
33649391 AAAAATAAGACAAACCAATAA
1 AAAAATAAGACAAA-CAATAA
33649412 TAAGTAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.73, C:0.07, G:0.05, T:0.15
Consensus pattern (20 bp):
AAAAATAAGACAAACAATAA
Found at i:33649410 original size:24 final size:23
Alignment explanation
Indices: 33649383--33649427 Score: 63
Period size: 24 Copynumber: 1.9 Consensus size: 23
33649373 AAATAAGATA
33649383 AATAATAAAAAAATAAGACAAACC
1 AATAATAAAAAAATAA-ACAAACC
**
33649407 AATAATAAGTAAATAAACAAA
1 AATAATAAAAAAATAAACAAA
33649428 TAAAACCTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.71, C:0.09, G:0.04, T:0.16
Consensus pattern (23 bp):
AATAATAAAAAAATAAACAAACC
Found at i:33649633 original size:8 final size:8
Alignment explanation
Indices: 33649619--33649649 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
33649609 AAATGGATAA
33649619 ATAAAAAT
1 ATAAAAAT
33649627 AGTAAAAAT
1 A-TAAAAAT
33649636 ATAAAAAT
1 ATAAAAAT
33649644 ATAAAA
1 ATAAAA
33649650 TAAAACAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 14 0.64
9 8 0.36
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (8 bp):
ATAAAAAT
Found at i:33658626 original size:24 final size:24
Alignment explanation
Indices: 33658598--33658645 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
33658588 TTCATATTAA
33658598 ATATTGAATATTTAAATTTTTACT
1 ATATTGAATATTTAAATTTTTACT
33658622 ATATTGAATATTTAAATTTTTACT
1 ATATTGAATATTTAAATTTTTACT
33658646 CAATATTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.54
Consensus pattern (24 bp):
ATATTGAATATTTAAATTTTTACT
Found at i:33667004 original size:10 final size:10
Alignment explanation
Indices: 33666959--33667012 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 10
33666949 TTTATAACCC
33666959 AAAAAATTAT
1 AAAAAATTAT
*
33666969 AAAAAGTT-T
1 AAAAAATTAT
*
33666978 AAAGAA-TAT
1 AAAAAATTAT
*
33666987 ATAAAAATTTT
1 A-AAAAATTAT
33666998 AAAAAA-TAT
1 AAAAAATTAT
33667007 AAAAAA
1 AAAAAA
33667013 AACCTAAACT
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
8 1 0.03
9 15 0.43
10 16 0.46
11 3 0.09
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.28
Consensus pattern (10 bp):
AAAAAATTAT
Found at i:33667013 original size:20 final size:20
Alignment explanation
Indices: 33666959--33667012 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
33666949 TTTATAACCC
33666959 AAAAAAT-TATAAAAAGTTT
1 AAAAAATATATAAAAAGTTT
* *
33666978 AAAGAATATATAAAAATTTT
1 AAAAAATATATAAAAAGTTT
33666998 AAAAAATATA-AAAAA
1 AAAAAATATATAAAAA
33667013 AACCTAAACT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
19 11 0.35
20 20 0.65
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.28
Consensus pattern (20 bp):
AAAAAATATATAAAAAGTTT
Found at i:33667035 original size:14 final size:13
Alignment explanation
Indices: 33667012--33667041 Score: 51
Period size: 14 Copynumber: 2.2 Consensus size: 13
33667002 AATATAAAAA
33667012 AAACCTAAACTCT
1 AAACCTAAACTCT
33667025 AAACACTAAACTCT
1 AAAC-CTAAACTCT
33667039 AAA
1 AAA
33667042 ATACCACCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.25
14 12 0.75
ACGTcount: A:0.53, C:0.27, G:0.00, T:0.20
Consensus pattern (13 bp):
AAACCTAAACTCT
Found at i:33683109 original size:22 final size:21
Alignment explanation
Indices: 33683073--33683121 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 21
33683063 TATAAAAATA
*
33683073 TTTA-AAAATTAAAAAATATTTT
1 TTTATAAAATT-AAAAAT-TGTT
33683095 TTTATAAAATT-AAAATTGTT
1 TTTATAAAATTAAAAATTGTT
33683115 TTTATAA
1 TTTATAA
33683122 TGTTTCACAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 10 0.40
21 5 0.20
22 4 0.16
23 6 0.24
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
TTTATAAAATTAAAAATTGTT
Found at i:33683946 original size:15 final size:16
Alignment explanation
Indices: 33683900--33683946 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
33683890 TATAAAAATC
*
33683900 ATATATAAAACCTTAAT
1 ATATATAAAA-ATTAAT
33683917 ATATATGAAATAATTAA-
1 ATATAT-AAA-AATTAAT
33683934 ATATATAAAAATT
1 ATATATAAAAATT
33683947 CAAAAAATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 4 0.15
16 3 0.11
17 12 0.44
18 7 0.26
19 1 0.04
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.36
Consensus pattern (16 bp):
ATATATAAAAATTAAT
Found at i:33684118 original size:105 final size:106
Alignment explanation
Indices: 33683935--33684145 Score: 415
Period size: 105 Copynumber: 2.0 Consensus size: 106
33683925 AATAATTAAA
33683935 TATATAAAAATTCAAAAAATATAAATATTATGAAATCTATTTTTTTTCTTTCTCATTGATTCTAA
1 TATATAAAAATTCAAAAAATATAAATATTATGAAATCTATTTTTTTTCTTTCTCATTGATTCTAA
33684000 ATGTTTCTTAAATCAAGCTCATTAAATAGTCAAAAGTTTAT
66 ATGTTTCTTAAATCAAGCTCATTAAATAGTCAAAAGTTTAT
33684041 TATATAAAAA-TCAAAAAATATAAATATTATGAAATCTATTTTTTTTCTTTCTCATTGATTCTAA
1 TATATAAAAATTCAAAAAATATAAATATTATGAAATCTATTTTTTTTCTTTCTCATTGATTCTAA
33684105 ATGTTTCTTAAATCAAGCTCATTAAATAGTCAAAAGTTTAT
66 ATGTTTCTTAAATCAAGCTCATTAAATAGTCAAAAGTTTAT
33684146 ATTTTCATAA
Statistics
Matches: 105, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
105 95 0.90
106 10 0.10
ACGTcount: A:0.41, C:0.10, G:0.06, T:0.43
Consensus pattern (106 bp):
TATATAAAAATTCAAAAAATATAAATATTATGAAATCTATTTTTTTTCTTTCTCATTGATTCTAA
ATGTTTCTTAAATCAAGCTCATTAAATAGTCAAAAGTTTAT
Found at i:33701311 original size:23 final size:22
Alignment explanation
Indices: 33701258--33701312 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 22
33701248 GACACATACA
*
33701258 ATTTGTTTATTATTTTAGTTTTT
1 ATTT-TTTATTATTTTAGTTTTG
33701281 ACTATTTTT-TTATTTTAGTATTTG
1 A-T-TTTTTATTATTTTAGT-TTTG
33701305 ATTTTTTA
1 ATTTTTTA
33701313 ACTCAATCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
22 5 0.19
23 12 0.44
24 8 0.30
25 2 0.07
ACGTcount: A:0.20, C:0.02, G:0.07, T:0.71
Consensus pattern (22 bp):
ATTTTTTATTATTTTAGTTTTG
Found at i:33712575 original size:26 final size:24
Alignment explanation
Indices: 33712536--33712585 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
33712526 TACACCATAG
33712536 GTCACCCAACTATGGATCATTTTTTT
1 GTCACCCAACTAT-GAT-ATTTTTTT
*
33712562 GTCACCCAATTATGATATTTTTTT
1 GTCACCCAACTATGATATTTTTTT
33712586 TTTAAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 8 0.35
25 3 0.13
26 12 0.52
ACGTcount: A:0.24, C:0.20, G:0.10, T:0.46
Consensus pattern (24 bp):
GTCACCCAACTATGATATTTTTTT
Found at i:33724310 original size:3 final size:3
Alignment explanation
Indices: 33724302--33724337 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
33724292 TATTTTCTCC
33724302 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
33724338 NNNNNNNNNN
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:33724833 original size:13 final size:14
Alignment explanation
Indices: 33724799--33724835 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
33724789 TGCTTTTATA
33724799 TATATTCATTTCGTT
1 TATATT-ATTTCGTT
33724814 TAT-TTATTT-GTT
1 TATATTATTTCGTT
33724826 TATATTATTT
1 TATATTATTT
33724836 TTATGCTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 6 0.29
13 10 0.48
14 2 0.10
15 3 0.14
ACGTcount: A:0.22, C:0.05, G:0.05, T:0.68
Consensus pattern (14 bp):
TATATTATTTCGTT
Found at i:33724866 original size:15 final size:15
Alignment explanation
Indices: 33724842--33724875 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
33724832 ATTTTTATGC
33724842 TATTGATGTATTTAT
1 TATTGATGTATTTAT
*
33724857 TATTGTTGTATTTAT
1 TATTGATGTATTTAT
33724872 TATT
1 TATT
33724876 ATAGCATTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.65
Consensus pattern (15 bp):
TATTGATGTATTTAT
Found at i:33725269 original size:98 final size:98
Alignment explanation
Indices: 33725150--33725342 Score: 341
Period size: 98 Copynumber: 2.0 Consensus size: 98
33725140 TTAAAAATAA
* *
33725150 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGCGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATCGTGCCCTAACGTATTCGGTGCGATTTC
33725215 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
* * *
33725248 TAAATGAAATATTCCGAGTTTGGGATTTTAGAGGAATCGTGCCCTAACGTATTCGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATCGTGCCCTAACGTATTCGGTGCGATTTC
33725313 TTAAATCTTGGATAAGTGGATGTTCTTTTA
66 TTAAATCTTGGATAAGTGGATGTTCTTTTA
33725343 TATTTTTATT
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.38
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATCGTGCCCTAACGTATTCGGTGCGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:33736740 original size:40 final size:41
Alignment explanation
Indices: 33736686--33736844 Score: 221
Period size: 42 Copynumber: 3.9 Consensus size: 41
33736676 GTTTACAAAC
33736686 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAA-
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAAG
* *
33736726 AAAAACGCCACTAAAGACCATGTTCTTTAGCGGCGCTTAGAT
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTA-AG
*
33736768 AAAAACACCGCTAAAGACCATGTTCTTTAGCGGCGCTTAAG
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAAG
* * * * *
33736809 ACAAAATGCCGCTAAAAAACATGGTCTTTAGTGGCG
1 A-AAAACGCCGCTAAAGACCATGTTCTTTAGCGGCG
33736845 TTTATTTCTA
Statistics
Matches: 106, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
40 38 0.36
41 3 0.03
42 65 0.61
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (41 bp):
AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAAG
Found at i:33736788 original size:82 final size:84
Alignment explanation
Indices: 33736686--33736844 Score: 241
Period size: 82 Copynumber: 1.9 Consensus size: 84
33736676 GTTTACAAAC
* * * *
33736686 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAA-A-AAAACGCCACTAAAGACCATGT
1 AAAAACACCGCTAAAGACCATGTTCTTTAGCGGCGCTTAAGACAAAACGCCACTAAAAAACATGG
33736749 TCTTTAGCGGCGCTTAGAT
66 TCTTTAGCGGCGCTTAGAT
* *
33736768 AAAAACACCGCTAAAGACCATGTTCTTTAGCGGCGCTTAAGACAAAATGCCGCTAAAAAACATGG
1 AAAAACACCGCTAAAGACCATGTTCTTTAGCGGCGCTTAAGACAAAACGCCACTAAAAAACATGG
*
33736833 TCTTTAGTGGCG
66 TCTTTAGCGGCG
33736845 TTTATTTCTA
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
82 39 0.57
83 1 0.01
84 28 0.41
ACGTcount: A:0.34, C:0.23, G:0.20, T:0.23
Consensus pattern (84 bp):
AAAAACACCGCTAAAGACCATGTTCTTTAGCGGCGCTTAAGACAAAACGCCACTAAAAAACATGG
TCTTTAGCGGCGCTTAGAT
Found at i:33736872 original size:42 final size:41
Alignment explanation
Indices: 33736816--33736991 Score: 199
Period size: 42 Copynumber: 4.2 Consensus size: 41
33736806 AAGACAAAAT
* *
33736816 GCCGCTAAAAAACATGGTCTTTAGTGGCGTTTATTTCTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTT-TTTCTAAGC
* * * *
33736858 GCCTCTGAAGAACATGTTCTTTAGCGGCGTTTTGTCTTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTC-TAAGC
* *
33736900 GCCGCTAAAGAACATTGTCTTTAGCGGCGTTTTTTTCCAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCG-TTTTTTCTAAGC
* ** * *
33736942 GCCGGTAAAGAACATTATCTTTAGCGGTGTTTTTTTTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTCTAAGC
*
33736983 GTCGCTAAA
1 GCCGCTAAA
33736992 AATTTAGCGG
Statistics
Matches: 113, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
41 20 0.18
42 87 0.77
43 6 0.05
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (41 bp):
GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTCTAAGC
Found at i:33736904 original size:84 final size:83
Alignment explanation
Indices: 33736816--33736993 Score: 232
Period size: 84 Copynumber: 2.1 Consensus size: 83
33736806 AAGACAAAAT
* * * *
33736816 GCCGCTAAAAAACATGGTCTTTAGTGGCGTTTATTTCTAAGCGCCTCTGAAGAACATGT-TCTTT
1 GCCGCTAAAAAACATGGTCTTTAGCGGCGTTTATTTCCAAGCGCCGCTAAAGAACAT-TATCTTT
33736880 AGCGGCGTTTTGTCTTAAGC
65 AGCGGCGTTTT-TCTTAAGC
* * * *
33736900 GCCGCTAAAGAACATTGTCTTTAGCGGCGTTTTTTTCCAAGCGCCGGTAAAGAACATTATCTTTA
1 GCCGCTAAAAAACATGGTCTTTAGCGGCGTTTATTTCCAAGCGCCGCTAAAGAACATTATCTTTA
* *
33736965 GCGGTGTTTTTTTTAAGC
66 GCGGCGTTTTTCTTAAGC
*
33736983 GTCGCTAAAAA
1 GCCGCTAAAAA
33736994 TTTAGCGGCG
Statistics
Matches: 81, Mismatches: 12, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
83 17 0.21
84 64 0.79
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (83 bp):
GCCGCTAAAAAACATGGTCTTTAGCGGCGTTTATTTCCAAGCGCCGCTAAAGAACATTATCTTTA
GCGGCGTTTTTCTTAAGC
Found at i:33737234 original size:21 final size:21
Alignment explanation
Indices: 33737210--33737256 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
33737200 TTAACTATTT
* *
33737210 AAATTAGTTAATGATATTGTA
1 AAATTAGATAATGAAATTGTA
* *
33737231 AAATTAGATGATTAAATTGTA
1 AAATTAGATAATGAAATTGTA
33737252 AAATT
1 AAATT
33737257 TCAAATTTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.00, G:0.13, T:0.40
Consensus pattern (21 bp):
AAATTAGATAATGAAATTGTA
Found at i:33738813 original size:26 final size:26
Alignment explanation
Indices: 33738776--33738826 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
33738766 ACTTTATGAT
* * *
33738776 TTCATGCGTGTATAAATATAAACCAC
1 TTCATGCATGTAAAAAGATAAACCAC
33738802 TTCATGCATGTAAAAAGATAAACCA
1 TTCATGCATGTAAAAAGATAAACCA
33738827 AACTTCAATG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (26 bp):
TTCATGCATGTAAAAAGATAAACCAC
Found at i:33745002 original size:114 final size:113
Alignment explanation
Indices: 33744802--33745305 Score: 741
Period size: 114 Copynumber: 4.4 Consensus size: 113
33744792 NNNNNNNNNN
33744802 TCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTAT-CAAAAATGCCGCTAAAGCCCTAGGCATTAGC
1 TCGTTGGGCTTAGGTTTTTTTGCGGCGCTTT-TCCAAAAATGCCGCTAAAGCCCTAGGCATTAGC
33744866 GACGCATCCTTAAAAACGCCGCTAAATCCCCAAAAGCTTAAAAAACGGCG
65 GACGCATCC-TAAAAACGCCGCTAAATCCCCAAAAGCTTAAAAAACGGCG
* *
33744916 TCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTGGGCATTAGCG
1 TCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTTCCAAAAATGCCGCTAAAGCCCTAGGCATTAGCG
* * ** * *
33744981 GCGCTTTACC-AAAAACGCCGCTAAATCCCTGAAAG-TTCAGAAAACGGCA
66 ACGC-AT-CCTAAAAACGCCGCTAAATCCCCAAAAGCTT-AAAAAACGGCG
33745030 TCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTAT-CAAAAATGCCGCTAAAGCCCTAGGCATTAGC
1 TCGTTGGGCTTAGGTTTTTTTGCGGCGCTTT-TCCAAAAATGCCGCTAAAGCCCTAGGCATTAGC
33745094 GACGCATCCTTAAAAACGCCGCTAAATCCCCAAAAGCTTAAAAAACGGCG
65 GACGCATCC-TAAAAACGCCGCTAAATCCCCAAAAGCTTAAAAAACGGCG
* * *
33745144 TCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCCCAAAAATGCCGCTAAAACCC-CGAGCATTAGC
1 TCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTTCCAAAAATGCCGCTAAAGCCCTAG-GCATTAGC
* * *
33745208 GGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTTAAAAAACGGCG
65 GACGC-ATCCTAAAAACGCCGCTAAATCCCCAAAAGCTTAAAAAACGGCG
*
33745258 TCGTTGGGCTTAGGTTTTTTTGCGGCGC-TTTCTCAAAAACGCCGCTAA
1 TCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTTC-CAAAAATGCCGCTAA
33745306 TGCTTTTTTT
Statistics
Matches: 354, Mismatches: 24, Indels: 24
0.88 0.06 0.06
Matches are distributed among these distances:
112 2 0.01
113 8 0.02
114 336 0.95
115 6 0.02
116 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (113 bp):
TCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTTCCAAAAATGCCGCTAAAGCCCTAGGCATTAGCG
ACGCATCCTAAAAACGCCGCTAAATCCCCAAAAGCTTAAAAAACGGCG
Found at i:33745206 original size:228 final size:228
Alignment explanation
Indices: 33744802--33745305 Score: 868
Period size: 228 Copynumber: 2.2 Consensus size: 228
33744792 NNNNNNNNNN
33744802 TCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTATCAAAAATGCCGCTAAAGCCCTAGGCATTAGCG
1 TCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTATCAAAAATGCCGCTAAAGCCCTAGGCATTAGCG
33744867 ACGCATCCTTAAAAACGCCGCTAAATCCCCAAAAGCTTAAAAAACGGCGTCGTTGGGCTTAGGTT
66 ACGCATCCTTAAAAACGCCGCTAAATCCCCAAAAGCTTAAAAAACGGCGTCGTTGGGCTTAGGTT
* * * *
33744932 TTTTTGCGGCGCTTTTCCAAAAACGCCGCTAAAGCCCTGGGCATTAGCGGCGCTTTAC-CAAAAA
131 TTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAACCCCGAGCATTAGCGGCGCTTT-CTCAAAAA
** *
33744996 CGCCGCTAAATCCCTGAAAG-TTCAGAAAACGGCA
195 CGCCGCTAAATCCCCAAAAGCTT-AAAAAACGGCA
33745030 TCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTATCAAAAATGCCGCTAAAGCCCTAGGCATTAGCG
1 TCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTATCAAAAATGCCGCTAAAGCCCTAGGCATTAGCG
33745095 ACGCATCCTTAAAAACGCCGCTAAATCCCCAAAAGCTTAAAAAACGGCGTCGTTGGGCTTAGGTT
66 ACGCATCCTTAAAAACGCCGCTAAATCCCCAAAAGCTTAAAAAACGGCGTCGTTGGGCTTAGGTT
* *
33745160 TTTTTGCGGCGCTTTCCCAAAAATGCCGCTAAAACCCCGAGCATTAGCGGCGCTTTCTTAAAAAC
131 TTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAACCCCGAGCATTAGCGGCGCTTTCTCAAAAAC
*
33745225 GCCGCTAAATCCCCAAAAGCTTAAAAAACGGCG
196 GCCGCTAAATCCCCAAAAGCTTAAAAAACGGCA
* *
33745258 TCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAA
1 TCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTATCAAAAATGCCGCTAA
33745306 TGCTTTTTTT
Statistics
Matches: 262, Mismatches: 12, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
227 1 0.00
228 259 0.99
229 2 0.01
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.26
Consensus pattern (228 bp):
TCGTTGGGCTTAGGTTTTTTTGCGGCGCTTTATCAAAAATGCCGCTAAAGCCCTAGGCATTAGCG
ACGCATCCTTAAAAACGCCGCTAAATCCCCAAAAGCTTAAAAAACGGCGTCGTTGGGCTTAGGTT
TTTTTGCGGCGCTTTCCCAAAAACGCCGCTAAAACCCCGAGCATTAGCGGCGCTTTCTCAAAAAC
GCCGCTAAATCCCCAAAAGCTTAAAAAACGGCA
Found at i:33766252 original size:27 final size:27
Alignment explanation
Indices: 33766211--33766294 Score: 141
Period size: 27 Copynumber: 3.1 Consensus size: 27
33766201 TAGTATTGGC
*
33766211 GCCTATCTGGAAGGCGCCAATGGTGGT
1 GCCTATCTGGGAGGCGCCAATGGTGGT
*
33766238 GCCTATTTGGGAGGCGCCAATGGTGGT
1 GCCTATCTGGGAGGCGCCAATGGTGGT
*
33766265 GCCTATCTGGGGGGCGCCAATGGTGGT
1 GCCTATCTGGGAGGCGCCAATGGTGGT
33766292 GCC
1 GCC
33766295 ATACTGCAAG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.14, C:0.23, G:0.40, T:0.23
Consensus pattern (27 bp):
GCCTATCTGGGAGGCGCCAATGGTGGT
Found at i:33766307 original size:27 final size:27
Alignment explanation
Indices: 33766211--33766313 Score: 136
Period size: 27 Copynumber: 3.8 Consensus size: 27
33766201 TAGTATTGGC
33766211 GCCTATCTGGAAGGCGCCAATGGTGGT
1 GCCTATCTGGAAGGCGCCAATGGTGGT
* *
33766238 GCCTATTTGGGAGGCGCCAATGGTGGT
1 GCCTATCTGGAAGGCGCCAATGGTGGT
**
33766265 GCCTATCTGGGGGGCGCCAATGGTGGT
1 GCCTATCTGGAAGGCGCCAATGGTGGT
* *
33766292 GCC-ATACTGCAAGGCGTCAATG
1 GCCTAT-CTGGAAGGCGCCAATG
33766314 CTGTGATTTT
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 2 0.03
27 65 0.97
ACGTcount: A:0.17, C:0.22, G:0.38, T:0.22
Consensus pattern (27 bp):
GCCTATCTGGAAGGCGCCAATGGTGGT
Found at i:33766417 original size:18 final size:20
Alignment explanation
Indices: 33766375--33766421 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 20
33766365 GAAACGGAAG
33766375 AAAGAAGAAGGAAGGAAGCA
1 AAAGAAGAAGGAAGGAAGCA
* *
33766395 GAAGAA-AA-GAAGGAAGGA
1 AAAGAAGAAGGAAGGAAGCA
33766413 AAAGAAGAA
1 AAAGAAGAA
33766422 AAAAATTAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 14 0.61
19 4 0.17
20 5 0.22
ACGTcount: A:0.64, C:0.02, G:0.34, T:0.00
Consensus pattern (20 bp):
AAAGAAGAAGGAAGGAAGCA
Found at i:33766424 original size:22 final size:23
Alignment explanation
Indices: 33766371--33766424 Score: 76
Period size: 22 Copynumber: 2.4 Consensus size: 23
33766361 TACAGAAACG
*
33766371 GAAGAAAGAAGAAGGAAGGAAGCA
1 GAAGAAA-AAGAAGGAAGGAAGAA
33766395 GAAG-AAAAGAAGGAAGGAA-AA
1 GAAGAAAAAGAAGGAAGGAAGAA
33766416 GAAGAAAAA
1 GAAGAAAAA
33766425 AATTAGGTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 5 0.18
22 17 0.61
23 2 0.07
24 4 0.14
ACGTcount: A:0.65, C:0.02, G:0.33, T:0.00
Consensus pattern (23 bp):
GAAGAAAAAGAAGGAAGGAAGAA
Found at i:33769900 original size:6 final size:6
Alignment explanation
Indices: 33769889--33769939 Score: 75
Period size: 6 Copynumber: 8.5 Consensus size: 6
33769879 AGAATGTAGT
* * *
33769889 TCTGGC TCTGGC TCTAGC TCTGGC TCTGTC TCTGGC TCTGAC TCTGGC
1 TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC TCTGGC
33769937 TCT
1 TCT
33769940 TGTGCATGAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.04, C:0.33, G:0.25, T:0.37
Consensus pattern (6 bp):
TCTGGC
Found at i:33774703 original size:29 final size:28
Alignment explanation
Indices: 33774670--33774736 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 28
33774660 GAAAAAGTAA
33774670 CCTATTTTGGTAAATTTTTTTTCTGACAT
1 CCTATTTTGGTAAATTTTTTTTCT-ACAT
*
33774699 CCTATTTTAGT--ATTTTTTTTCTACAT
1 CCTATTTTGGTAAATTTTTTTTCTACAT
*
33774725 --TATTTGGGTAAA
1 CCTATTTTGGTAAA
33774737 AAACTCATTA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
24 7 0.21
26 5 0.15
27 11 0.33
29 10 0.30
ACGTcount: A:0.22, C:0.12, G:0.10, T:0.55
Consensus pattern (28 bp):
CCTATTTTGGTAAATTTTTTTTCTACAT
Found at i:33774878 original size:15 final size:15
Alignment explanation
Indices: 33774858--33774890 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
33774848 GAGAGACGAC
33774858 AAAGGAGAAAAAAAG
1 AAAGGAGAAAAAAAG
*
33774873 AAAGGAGAGAAAAAG
1 AAAGGAGAAAAAAAG
33774888 AAA
1 AAA
33774891 AAAAATGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (15 bp):
AAAGGAGAAAAAAAG
Found at i:33777346 original size:20 final size:21
Alignment explanation
Indices: 33777321--33777359 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
33777311 ATCTTACATG
*
33777321 AAATTAAA-AATATAACTCTT
1 AAATTAAAGAAAATAACTCTT
33777341 AAATTAAAGAAAATAACTC
1 AAATTAAAGAAAATAACTC
33777360 AATAAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (21 bp):
AAATTAAAGAAAATAACTCTT
Found at i:33779222 original size:24 final size:24
Alignment explanation
Indices: 33779194--33779245 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
33779184 TTAGTAAGTC
* *
33779194 AAATAAATTATGCTAATAAATGCT
1 AAATAAATTATACTAATAAATACT
*
33779218 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
33779242 AAAT
1 AAAT
33779246 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:33781189 original size:24 final size:24
Alignment explanation
Indices: 33781161--33781212 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
33781151 TTAGTAAGTC
*
33781161 AAATAAACTATGCTAATAAATACT
1 AAATAAACTATACTAATAAATACT
* *
33781185 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
33781209 AAAT
1 AAAT
33781213 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:33789998 original size:21 final size:19
Alignment explanation
Indices: 33789951--33789998 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 19
33789941 TAACGTGTCC
33789951 ATGTTATATATTATAAAAA
1 ATGTTATATATTATAAAAA
** *
33789970 ATAATATACTTATTTTAAAAA
1 ATGTTATA--TATTATAAAAA
33789991 ATGTTATA
1 ATGTTATA
33789999 ATTTTTGCCT
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
19 6 0.27
21 16 0.73
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (19 bp):
ATGTTATATATTATAAAAA
Found at i:33791140 original size:11 final size:11
Alignment explanation
Indices: 33791103--33791144 Score: 52
Period size: 11 Copynumber: 4.0 Consensus size: 11
33791093 TAAGAAATAA
33791103 AAATCAGAATC
1 AAATCAGAATC
**
33791114 AAATCCCAA-C
1 AAATCAGAATC
33791124 -AATCAGAATC
1 AAATCAGAATC
33791134 AAATCAGAATC
1 AAATCAGAATC
33791145 TGAATCAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
9 6 0.24
10 2 0.08
11 17 0.68
ACGTcount: A:0.52, C:0.24, G:0.07, T:0.17
Consensus pattern (11 bp):
AAATCAGAATC
Found at i:33791431 original size:151 final size:151
Alignment explanation
Indices: 33791157--33791459 Score: 588
Period size: 151 Copynumber: 2.0 Consensus size: 151
33791147 AATCAAAACC
*
33791157 TAACAAATGCTATGGTCTACTGTTTGAATTTGAATGAAGATTTAGAAGGCTTCAAAGTCCTGATA
1 TAACAAATGCTATGGTCTACTATTTGAATTTGAATGAAGATTTAGAAGGCTTCAAAGTCCTGATA
33791222 CATACAATGTTTAACGTTACATATGTGCTAATGTAATTCTTGTTGCTTCTTGACTTCCTTGCATG
66 CATACAATGTTTAACGTTACATATGTGCTAATGTAATTCTTGTTGCTTCTTGACTTCCTTGCATG
33791287 TCTATGACGGTTTGGTCCTCT
131 TCTATGACGGTTTGGTCCTCT
33791308 TAACAAATGCTATGGTCTACTATTTGAATTTGAATGAAGATTTAGAAGGCTTCAAAGTCCTGATA
1 TAACAAATGCTATGGTCTACTATTTGAATTTGAATGAAGATTTAGAAGGCTTCAAAGTCCTGATA
33791373 CATACAATGTTTAACGTTACATATGTGCTAATGTAATTCTTGTTGCTTCTTGACTTCCTTGCATG
66 CATACAATGTTTAACGTTACATATGTGCTAATGTAATTCTTGTTGCTTCTTGACTTCCTTGCATG
*
33791438 TCTATGATGGTTTGGTCCTCT
131 TCTATGACGGTTTGGTCCTCT
33791459 T
1 T
33791460 GCAGAAACGT
Statistics
Matches: 150, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
151 150 1.00
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.40
Consensus pattern (151 bp):
TAACAAATGCTATGGTCTACTATTTGAATTTGAATGAAGATTTAGAAGGCTTCAAAGTCCTGATA
CATACAATGTTTAACGTTACATATGTGCTAATGTAATTCTTGTTGCTTCTTGACTTCCTTGCATG
TCTATGACGGTTTGGTCCTCT
Found at i:33795451 original size:18 final size:18
Alignment explanation
Indices: 33795407--33795451 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
33795397 CATTCGTTTC
*
33795407 CAAAACATTATTCATTTA
1 CAAAACGTTATTCATTTA
*
33795425 CAAATCGTTATTCAATTT-
1 CAAAACGTTATTC-ATTTA
33795443 CAAAACGTT
1 CAAAACGTT
33795452 TTCTTATTGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (18 bp):
CAAAACGTTATTCATTTA
Found at i:33803125 original size:25 final size:24
Alignment explanation
Indices: 33803097--33803145 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
33803087 TAATAAAATA
33803097 TAAAATTATTT-TTAATAATTAATTT
1 TAAAA-TATTTATTAAT-ATTAATTT
33803122 TAAAATATTTCATTAATATTAATT
1 TAAAATATTT-ATTAATATTAATT
33803146 AATTAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
24 5 0.23
25 12 0.55
26 5 0.23
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (24 bp):
TAAAATATTTATTAATATTAATTT
Found at i:33808695 original size:12 final size:12
Alignment explanation
Indices: 33808678--33808709 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
33808668 ATCTTGGTAA
33808678 GGCCAATGTGGT
1 GGCCAATGTGGT
33808690 GGCCAATGTGGT
1 GGCCAATGTGGT
*
33808702 AGCCAATG
1 GGCCAATG
33808710 CTTTTAGTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.22, C:0.19, G:0.38, T:0.22
Consensus pattern (12 bp):
GGCCAATGTGGT
Found at i:33818349 original size:759 final size:754
Alignment explanation
Indices: 33816354--33818502 Score: 2708
Period size: 759 Copynumber: 2.8 Consensus size: 754
33816344 ATTATTTGTT
* * *
33816354 ATTTTATTTTTTAAATCAAATCCCTATTATTTTTCTATTTCGGCAACCGTCAAACCACCTTCTAT
1 ATTTTATTTTTTAAATCAAATCCCTATTATTTTTCTCTTTCGGCAACCGTCAAACCAACTTCTCT
* * * * * * *
33816419 TTAGCTACACATTTCTTTCCCTTCTTTCAATTTTGTTTGACATTTGTTTCTCTCTTTTCCACTTT
66 TTGGTTGCACGTTTCTTTCCCTTCTTTCAATTTTGTTTTACACTTGTTT-T-TC-TTT-C-TTTT
* * ** * *
33816484 CTTTCCTTTTTTTTCGCCTTGCCAATGCTGACTCCTTCTTTTACTATTGTGCCCATTGTAAAATC
126 C-TT-C--TTTTTT-GCCTTGCCAACGCCGACTCCTTCTTTTGTTATTGTGCCAATTGCAAAATC
* * *
33816549 TTTCTTTTGTTGCATAAGAACACTATTGTGGCTTGTTATGATTCTATTGTTCGCTTGTTTCTTTC
186 TTTCTTTTGTTGCGTAAGAACACTATTGAGGCTTGTTATGATTCTGTTGTTCGCTTGTTTCTTTC
* *
33816614 TTCTCCTCATGGTGGCTTGGTTGTGTTGGTAAGTTATGTGGAAGATTAGTTCTTTATAAGGTTGG
251 TTTTCCTCGT-GTGGCTTGGTTGTGTTGGTAAGTTATGTGGAAGATTAGTTCTTTATAAGGTTGG
* * * * * *
33816679 GG-TTTGTTGTTTTAAGCAAAAAATTTCGCAGATTAATGATTTTACGATTGATACAGTATTGTGG
315 GGTTTTGTTGTTTTAAGCAAAAAA-TCCGTAGATTAATGATTTTATGATTGATATAGTGTTGTTG
* * * * ** * *
33816743 CTGGTTGTTGTGGATAAGAAAAGAGCGCGTGGTGATAGA-ACGCCCTCTGAAAAATTAAGTTTTT
379 CTGGTTGTTGTGGATAGGAGAAGAGCGCATGGTGATAGACA-ACTTTC-GGAAAATTAAGGTTTT
* * * *
33816807 GGAGTAGTTGCTGGAAGTTTGTGGTAATTGCTTATTTATGAATATAGGGACTATTTCTTTGAGAA
442 GGAGTAGTTGCTGCAAGTTTGTGGTAACTACTTGTTTATGAATATAGGGACTATTTCTTTGAGAA
* * * * * *
33816872 AAGA-ATGAATTTAAATGGTAATGTTCGTGTTAAATCGAAGTTGTAGTCGTTGATTTTGGTGTTA
507 AAGAGA-GAATTTAAATGGTAATGTTCGTGTTAAATCGAAGTTGTAATAGTT-AGTTTGATGCTG
* * **
33816936 TTTGTAGGATTTTTAGTGTACGACTGCTTGGTGGATTAATCCCGC-AGTCAGGTGTGTGAAAACA
570 TTTGTAGGA-TTTTAGTGTACGACTGCGTAGTGGATTAATGTCGCTA-TCAGGTGTGTGAAAACA
* * * * * *
33817000 ATCCTAAAACTCGGTAGAAACTCATTAAATTGTGAAACAGGGGTTGTTTTTCAAAATTGCCTAGT
633 ATCCTAAAACTCGATAGAAACTCATTAAATCGTGAAACAGGGCTTGTTTTTCAAAACTGCCCAAT
* * * * *
33817065 GCCACACAGCCGTGTGTCAGGCTGTGTGGTAGATTATGTGTGCCACACTGCCGTTTA
698 GCCACACAGCCGTGTGTCAGGCTGTATGGTAAATTATGTGTGCCACACAGCCATGTA
* *
33817122 GTTTTATTTTTTTAAATCAAATCCCTATTATTTTTCTCTTTCGGCAACCTTCAAACCAACTTCTC
1 ATTTTA-TTTTTTAAATCAAATCCCTATTATTTTTCTCTTTCGGCAACCGTCAAACCAACTTCTC
* *
33817187 TTTGGTTGCACGTTT-TTTCCCTTCTTTCAATTTTGTTTTA-ACTT-TTTTTCTTTCTTTCCTTA
65 TTTGGTTGCACGTTTCTTTCCCTTCTTTCAATTTTGTTTTACACTTGTTTTTCTTTCTTTTCTTC
* *
33817249 TTTTTTGCCTTGCCAACGCCGACTCCTTCTTTTGTTTTTTTGCCAATTGCAAAATCTTTCTTTTG
130 TTTTTTGCCTTGCCAACGCCGACTCCTTCTTTTGTTATTGTGCCAATTGCAAAATCTTTCTTTTG
* * *
33817314 TTGCGTAAGAACACTGTTGAAGCTTGTTATGATTCAGTTGTTCGCTTGTTTCTTTCTTTTCCTCG
195 TTGCGTAAGAACACTATTGAGGCTTGTTATGATTCTGTTGTTCGCTTGTTTCTTTCTTTTCCTCG
* *
33817379 TGATGGCTTGGTTGTGTTGGTAAGTTGTGTGGAAGATTAGTTCTTTATAAGGTTGGGGTATTGTT
260 TG-TGGCTTGGTTGTGTTGGTAAGTTATGTGGAAGATTAGTTCTTTATAAGGTTGGGGTTTTGTT
* *
33817444 GTTTTAAGCAAAAAAATCCGTGGATTAATGATTTTATGATTGATATAGTGTTTTTGGCTGGTTGT
324 GTTTTAAGC-AAAAAATCCGTAGATTAATGATTTTATGATTGATATAGTGTTGTT-GCTGGTTGT
* * * *
33817509 TATGGATAGGAGAAGAGCGCGA-GGTGAAAGACAATCTTTCGGAAAATTAAGGTTTCGGTGTAGT
387 TGTGGATAGGAGAAGAGCGC-ATGGTGATAGACAA-CTTTCGGAAAATTAAGGTTTTGGAGTAGT
* *
33817573 TGCTGCAAGTTTGTGGTAACTACTTGTTTATGAATATAGGGACTATTTCTTTGAGAAAATAGCGA
450 TGCTGCAAGTTTGTGGTAACTACTTGTTTATGAATATAGGGACTATTTCTTTGAGAAAAGAGAGA
* * *
33817638 GTTTAAATGGGAATGTTCGTGTTAAATCGAAGTTTTAATAGTTAGTTGTGATGCTGTTTGTAGGA
515 ATTTAAATGGTAATGTTCGTGTTAAATCGAAGTTGTAATAGTTAGTT-TGATGCTGTTTGTAGGA
* ** *
33817703 TTTTACGTGTACGACTACGTCTTGGATTAATGTCGCTATCAGGTGTGTGAAAACGATCCTAAAAC
579 TTTTA-GTGTACGACTGCGTAGTGGATTAATGTCGCTATCAGGTGTGTGAAAACAATCCTAAAAC
* * * **
33817768 TTGATAGAAACTCGTTATATCGTGAAACAAGGGCTT-TTTTTCAAAACTGCCCAATGCCACATGG
643 TCGATAGAAACTCATTAAATCGTGAAAC-AGGGCTTGTTTTTCAAAACTGCCCAATGCCACACAG
* * *
33817832 TCGTGTGTCAGGCTGTATGG-AAATTGTGTGTGTCACACAGCCATGTA
707 CCGTGTGTCAGGCTGTATGGTAAATTATGTGTGCCACACAGCCATGTA
* * * * *
33817879 ATTTAATTTTTTAAAATTAAATCCCTATTATTTTTCTCTTTCGGTATCCGTCAAAGCAACTTCTC
1 ATTTTATTTTTT-AAATCAAATCCCTATTATTTTTCTCTTTCGGCAACCGTCAAACCAACTTCTC
33817944 TTTGGTTGCACGTTTCTTTCCCTTCTTTCAATTTTGTTTTACA-TTGTTTTTCTTTCTTTTCTTC
65 TTTGGTTGCACGTTTCTTTCCCTTCTTTCAATTTTGTTTTACACTTGTTTTTCTTTCTTTTCTTC
* *
33818008 TTTCTTGCCGTGCCAACGCCGACTCCTTCTTTTGTTATTGTGCCAATTGCAAAATCTTTCTTTTG
130 TTTTTTGCCTTGCCAACGCCGACTCCTTCTTTTGTTATTGTGCCAATTGCAAAATCTTTCTTTTG
* *
33818073 TTGCGTAAGAACACTATTGAGGCTTTTTATGATTCTGTTGTTCGCTTGTTTCTTTCTTTTCTTCG
195 TTGCGTAAGAACACTATTGAGGCTTGTTATGATTCTGTTGTTCGCTTGTTTCTTTCTTTTCCTCG
* * *
33818138 TCGTGGCTTGGTTGTGTTGGCAAGTTTTGTGGAAGATTAGTTCTTTATCAGGTTGGGGATTTTGT
260 T-GTGGCTTGGTTGTGTTGGTAAGTTATGTGGAAGATTAGTTCTTTATAAGGTTGGGG-TTTTGT
* * *
33818203 TGTTTTAAGCAGAAAAATCCGTAGATTAATAATTTTATGATAGATATAGTGTTGTTGATGGTTGT
323 TGTTTTAAGCA-AAAAATCCGTAGATTAATGATTTTATGATTGATATAGTGTTGTTGCTGGTTGT
* * * **
33818268 TGTGGATAGGAGAAGAGTGCATGGTGGTAGACAACTTTC-CAACAAGTTGTGGTTTTGGAGTAGT
387 TGTGGATAGGAGAAGAGCGCATGGTGATAGACAACTTTCGGAA-AA-TTAAGGTTTTGGAGTAGT
* * * * ** * *
33818332 TGTTACAAGTTTGTGGTAACTACTTGTTTATGGATATAGGAACGGTTTATTTGACAAAAGAGAGA
450 TGCTGCAAGTTTGTGGTAACTACTTGTTTATGAATATAGGGACTATTTCTTTGAGAAAAGAGAGA
** * *
33818397 ATTTATGTGGTAATGTTTGTGTTAAATCGAAGTTGTAATCA--TAGGTTT-ATGCCGTTTGTAGG
515 ATTTAAATGGTAATGTTCGTGTTAAATCGAAGTTGTAAT-AGTTA-GTTTGATGCTGTTTGTAGG
* * *
33818459 ATTTTAAATGTACGACTGCGTAGTGGATTAAAGTCGCTGTCAGG
578 ATTTT-AGTGTACGACTGCGTAGTGGATTAATGTCGCTATCAGG
33818503 CCGTGTGGTA
Statistics
Matches: 1203, Mismatches: 152, Indels: 63
0.85 0.11 0.04
Matches are distributed among these distances:
755 1 0.00
756 169 0.14
757 197 0.16
758 323 0.27
759 344 0.29
760 59 0.05
761 3 0.00
762 1 0.00
763 3 0.00
764 2 0.00
765 1 0.00
766 3 0.00
767 3 0.00
768 29 0.02
769 65 0.05
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.42
Consensus pattern (754 bp):
ATTTTATTTTTTAAATCAAATCCCTATTATTTTTCTCTTTCGGCAACCGTCAAACCAACTTCTCT
TTGGTTGCACGTTTCTTTCCCTTCTTTCAATTTTGTTTTACACTTGTTTTTCTTTCTTTTCTTCT
TTTTTGCCTTGCCAACGCCGACTCCTTCTTTTGTTATTGTGCCAATTGCAAAATCTTTCTTTTGT
TGCGTAAGAACACTATTGAGGCTTGTTATGATTCTGTTGTTCGCTTGTTTCTTTCTTTTCCTCGT
GTGGCTTGGTTGTGTTGGTAAGTTATGTGGAAGATTAGTTCTTTATAAGGTTGGGGTTTTGTTGT
TTTAAGCAAAAAATCCGTAGATTAATGATTTTATGATTGATATAGTGTTGTTGCTGGTTGTTGTG
GATAGGAGAAGAGCGCATGGTGATAGACAACTTTCGGAAAATTAAGGTTTTGGAGTAGTTGCTGC
AAGTTTGTGGTAACTACTTGTTTATGAATATAGGGACTATTTCTTTGAGAAAAGAGAGAATTTAA
ATGGTAATGTTCGTGTTAAATCGAAGTTGTAATAGTTAGTTTGATGCTGTTTGTAGGATTTTAGT
GTACGACTGCGTAGTGGATTAATGTCGCTATCAGGTGTGTGAAAACAATCCTAAAACTCGATAGA
AACTCATTAAATCGTGAAACAGGGCTTGTTTTTCAAAACTGCCCAATGCCACACAGCCGTGTGTC
AGGCTGTATGGTAAATTATGTGTGCCACACAGCCATGTA
Found at i:33819433 original size:12 final size:12
Alignment explanation
Indices: 33819411--33819444 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
33819401 TATGTTTTAC
33819411 ATTTT-TTCTTT
1 ATTTTCTTCTTT
33819422 ATTTTCTTCTTT
1 ATTTTCTTCTTT
*
33819434 CTTTTCTTCTT
1 ATTTTCTTCTT
33819445 ATACGTCTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.06, C:0.18, G:0.00, T:0.76
Consensus pattern (12 bp):
ATTTTCTTCTTT
Found at i:33819641 original size:768 final size:767
Alignment explanation
Indices: 33818496--33823527 Score: 6142
Period size: 768 Copynumber: 6.6 Consensus size: 767
33818486 TTAAAGTCGC
* * *
33818496 TGTCAGGCCGTGTGGTAGATTTTTTGTGTCACACGACCGTGTAA-ATT-TTTTTT-AAATCAAAT
1 TGTCAGGCCGTGTGGTAGATTGTGTGTGTCACACGACCGTGTAATTTTATTTTTTAAAATCAAAT
* * * *
33818558 CTCTATTATTTTTCTCTTTCGGAAACCGTCAAACCAACTTCTCTTTGGTTGCACGTGTCTTT-TC
66 CCCTATTATTTTTCTCTTTCGGCAACCGTCAAACCAACTTCTCTTTGGTTGCACGTTTCTTTCCC
* * * *
33818622 TTTTTGTCATTTTTGTTTTACATTTTTTAGTCTTTCTTTTTTTCTTTCTTTCCATCTTTTTCACC
131 TTCTT-TCA-ATTTGTTTTACA-TTTTT--TCTTTCTTTTCTTCTTTCTTTCCTTCTTTTTCACC
* * *
33818687 TTTCCAACGTTCG-CT-C--CTTTTGTTATTGTGCCAATTACGAAATCTTTCTTTTGTTGTGTAA
191 TTGCCAACG-TCGACTCCTTCTTTTGTTATTGTGCCAATTGCGAAATCTTTCTTTTGTTGCGTAA
* * * *
33818748 AAACACTGTTGAGGCATGTTATGATTCTGTTGTTCGCTTGTTTGTTTATTTTCCTCGTGGTGGCT
255 GAACACTGTTGAGGCTTGTTATGATTCTGTTGTTCGCTTGTTTCTTTCTTTTCCTCGTGGTGGCT
* *
33818813 TGGTTGTGTTTGTAAGTTGTGTGGAAGATTATGTT-TTTATAAGGTTAGGGTTTTGTTGTTTTAA
320 TGGTTGTGTTGGTAAGTTGTGTGGAAGATTA-GTTCTTTATAAGGTTGGGGTTTTGTTGTTTTAA
* * *
33818877 GTAGAAAAATTCGTAGATTAATGATTTTATGATTGATATAGTGTTGTGGCTCATTGTTGTGGATA
384 GCAAAAAAATTCGTAGATTAATGATTTTATGATTGATATAGTGTTGTGGCTGATTGTTGTGGATA
* * *
33818942 TGAGAAGAGCACATGGTGATAGACAACACTCCGACAAATTAAGGTTTTGGAGTAGTTGTTGCAAG
449 GGAGAAGAGCGCGTGGTGATAGACAAC-CTCCGACAAATTAAGGTTTTGGAGTAGTTGTTGCAAG
* * **
33819007 TTTGTGTTAACGACTTGTTTATGAATATAGGGACTG-TTCATTTGAGAAAAGAATGAATTTAAGT
513 TTTGTGGTAACTACTTGTTTATGAATATAGGGACTGTTTC-TTTGAGAAAAGAGCGAATTTAAGT
* * *
33819071 GGTAATGTTCGTGTTTAATCGAAGTTGTAACCGTTGGTTTTGGTGTCGATTGTAGGATTTTAAGT
577 GGTAATGTTCGTGTTAAATCGAAGTTGTAATCGTTGGTTTTGGTGCCGATTGTAGGATTTTAAGT
* ** *
33819136 GTACGACTGTGTGGTGGATTAATGTCGCTATCAGGTGTGTGAAAATGATCTTAAAACTCGATAGA
642 GTACGACTGCGTGGTGGATTAATGTCGCTATCAGGTGTGTGAAAACAATCCTAAAACTCGATAGA
* * *
33819201 AACTCATTAAATGGTGAAACAGGGGCTGTTTTTCGAAACTGCCTAGTGCCACACGGCTGTG
707 AACTCGTTAAATCGTGAAACAGGGGCTATTTTTCGAAACTGCCTAGTGCCACACGGCTGTG
* * *
33819262 TGTCAAGCCGTTTGGTAGGTTGTGTGTGTCACACGACCGTGTAATTTTATTTTTTAAAATCAAAT
1 TGTCAGGCCGTGTGGTAGATTGTGTGTGTCACACGACCGTGTAATTTTATTTTTTAAAATCAAAT
* * * *
33819327 CCCTATCATTTTTCTCTTTCAGTAACCTTCAAACCAACTTCTCTTTGGTTGCACG-TTCTTTCCC
66 CCCTATTATTTTTCTCTTTCGGCAACCGTCAAACCAACTTCTCTTTGGTTGCACGTTTCTTTCCC
* * * * **
33819391 TTCTTTCAATTATGTTTTACATTTTTTCTTTATTTTCTTCTTTCTTTTCTTCTTATACGTCTTGC
131 TTCTTTCAATT-TGTTTTACATTTTTTCTTTCTTTTCTTCTTTCTTTCCTTCTTTTTCACCTTGC
*
33819456 CAACGCCGACTCCTTCTTTTGTTATTGTGCCAATTGCGAAATCTTTCTTTTGTTGCGTAAGAACA
195 CAACGTCGACTCCTTCTTTTGTTATTGTGCCAATTGCGAAATCTTTCTTTTGTTGCGTAAGAACA
* * * * *
33819521 CTGTT-AGGGCTTATTATGATTTTATTGTTTGCATGTTTCTTTCTTTTCCTCGTGGTGGCTTGGT
260 CTGTTGA-GGCTTGTTATGATTCTGTTGTTCGCTTGTTTCTTTCTTTTCCTCGTGGTGGCTTGGT
33819585 TGTGTTGGTAAGTTGTGTGGAAGATTAGTTCTTTATAAGGTTGGGGTTTTGTTGTTTTAAGCAAA
324 TGTGTTGGTAAGTTGTGTGGAAGATTAGTTCTTTATAAGGTTGGGGTTTTGTTGTTTTAAGCAAA
*
33819650 AAAATCCGTAGATTAATGATTTTATGATTGATATAGTGTTGTGGCT-AGTTGTTGTGGATAGGAG
389 AAAATTCGTAGATTAATGATTTTATGATTGATATAGTGTTGTGGCTGA-TTGTTGTGGATAGGAG
* * * *
33819714 AAGAGCGCGTGGTGATAGACAACCTTTCGTCAAATTAAGGTTTTGGTGTAGTTGCTGCAAGTTTG
453 AAGAGCGCGTGGTGATAGACAACC-TCCGACAAATTAAGGTTTTGGAGTAGTTGTTGCAAGTTTG
* * * *
33819779 TAGTAACAACTTGTTTATGAATATAGGGATTGTTTCTTTGAGAAAAGAGCGAATGTAAGTGGTAA
517 TGGTAACTACTTGTTTATGAATATAGGGACTGTTTCTTTGAGAAAAGAGCGAATTTAAGTGGTAA
* * * *
33819844 TGTTCATGTTAAATCGAATTTGTAATCGTTGGTTTTGGTACCGTTTGTAGGATTTTAAGTGTACG
582 TGTTCGTGTTAAATCGAAGTTGTAATCGTTGGTTTTGGTGCCGATTGTAGGATTTTAAGTGTACG
* * * * *
33819909 ACTGCATGGTGGATTAATCTCGCTATCAGGTGTGTTAAAACGATCCTAAAACTCGGTAGAAACTC
647 ACTGCGTGGTGGATTAATGTCGCTATCAGGTGTGTGAAAACAATCCTAAAACTCGATAGAAACTC
* * * * **
33819974 GTTAAATCGTGAAACATGGGCTATTTTTTGAAATTTCCTAGTGCCACAC-AATAGTG
712 GTTAAATCGTGAAACAGGGGCTATTTTTCGAAACTGCCTAGTGCCACACGGCT-GTG
* *** * * * *
33820030 TGTTAGGCCGTGTGGTAGATTGTGTGCACCACATGATCGTGTGATTTTATTTTTTAATATCAAAT
1 TGTCAGGCCGTGTGGTAGATTGTGTGTGTCACACGACCGTGTAATTTTATTTTTTAAAATCAAAT
* * * *
33820095 TCCTATTATTTTTCTATTTCGGCAACCGTCAAACCAACTTCTCTTTAGTTGCACGTTTCTTTCTC
66 CCCTATTATTTTTCTCTTTCGGCAACCGTCAAACCAACTTCTCTTTGGTTGCACGTTTCTTTCCC
* * * * **
33820160 TTCTTTCAAGTTTGTTTTATATTTTTTTCCTTCTTTCCTTCTTTCTTTCCTT-GTTTTCACCCCG
131 TTCTTTCAA-TTTGTTTTACA-TTTTTTCTTTCTTTTCTTCTTTCTTTCCTTCTTTTTCACCTTG
* * ** * *
33820224 CCAACGTCGACTCCTTCTTTTGTTATTGTGCAAATAGAAAAATCTTTCTTTTTTTGTGTAAGAAC
194 CCAACGTCGACTCCTTCTTTTGTTATTGTGCCAATTGCGAAATCTTTCTTTTGTTGCGTAAGAAC
* * *
33820289 ATTGTTGAGGCTTGTTATGATTCTGTTGTTCGCTTGTTTCTTTCTTTTCCTCATGGTGCCTTGGT
259 ACTGTTGAGGCTTGTTATGATTCTGTTGTTCGCTTGTTTCTTTCTTTTCCTCGTGGTGGCTTGGT
* * * *
33820354 TGTGTTGTTAAGTTGT-TGGAAGTTTAGTTCTTTATAAGGTTGGGGTTTTGTTGCTTTAAGCAGA
324 TGTGTTGGTAAGTTGTGTGGAAGATTAGTTCTTTATAAGGTTGGGGTTTTGTTGTTTTAAGCAAA
* * * **
33820418 AAAA-TCTGTAGATTAATGATTTTATGATTGATATAATGTTGTGGTTGGTTGTTGTGGATTTGAG
389 AAAATTC-GTAGATTAATGATTTTATGATTGATATAGTGTTGTGGCTGATTGTTGTGGATAGGAG
* * *
33820482 AAGAGCGCATGGTGATAGACAACTCTCCAACAAATTAAGGTTTTGGAGTAGTTGTTGCAATTTTG
453 AAGAGCGCGTGGTGATAGACAAC-CTCCGACAAATTAAGGTTTTGGAGTAGTTGTTGCAAGTTTG
* * * * * * *
33820547 TGGTAACTACAAT-TTTATGAATAAAGGGACTCTTTCTCTGAGGAAAGAGCGAATTTAAATGGAA
517 TGGTAACTAC-TTGTTTATGAATATAGGGACTGTTTCTTTGAGAAAAGAGCGAATTTAAGTGGTA
* * * * *
33820611 AAGTTCATGTTAAACCAAAGTTGTAATCGTTTG-TTT--TG--G--TG-AGGATTTTAAGTGTAC
581 ATGTTCGTGTTAAATCGAAGTTGTAATCGTTGGTTTTGGTGCCGATTGTAGGATTTTAAGTGTAC
** * * *
33820668 GACTGCAAGGTGGATTAATGTCACTATTAGGTGTGTGAAAAGAATCCTAAAACTCGATAGAAACT
646 GACTGCGTGGTGGATTAATGTCGCTATCAGGTGTGTGAAAACAATCCTAAAACTCGATAGAAACT
* * * *
33820733 CGTTAAATC-TGAAATAGGGG-TAATGTTTT-GAAACTGCCCAGTGCCACACGGCCGAG
711 CGTTAAATCGTGAAACAGGGGCT-AT-TTTTCGAAACTGCCTAGTGCCACACGGCTGTG
* * * * *
33820789 TGTCAAGCCGTTTGGTAGATTGTGTGTGTCACACGACCATGTAACTTTATTTTTTTAAATCAAAT
1 TGTCAGGCCGTGTGGTAGATTGTGTGTGTCACACGACCGTGTAATTTTATTTTTTAAAATCAAAT
** *
33820854 CCCTATTATTTTTCTCTTTCGGCAACCGTCAAACCAACTTCTCTTCAGTTGCACGTTTCTTTCCG
66 CCCTATTATTTTTCTCTTTCGGCAACCGTCAAACCAACTTCTCTTTGGTTGCACGTTTCTTTCCC
* *
33820919 TTCTTTCAATTTTGTTTTACATTTTTTTCTTT-TTTCTCTTCTTTCGTTCCTTCTTTTTCTCCTT
131 TTCTTTCAA-TTTGTTTTACA-TTTTTTCTTTCTTT-TCTTCTTTCTTTCCTTCTTTTTCACCTT
* * ** *
33820983 GCCAATGCCGACT-C--CTTTTGTTATTGTGCCAATTGTAAAATCTTTCTCTTGTTGCGTAAGAA
193 GCCAACGTCGACTCCTTCTTTTGTTATTGTGCCAATTGCGAAATCTTTCTTTTGTTGCGTAAGAA
* * ** *
33821045 CACTATTGAGGCTTGTTATGATTCGGTTGTTAACTTGTTTCTTTCTTTTCCTGGTGGTGGCCTT-
258 CACTGTTGAGGCTTGTTATGATTCTGTTGTTCGCTTGTTTCTTTCTTTTCCTCGTGGTGG-CTTG
* * *
33821109 GTTGCT-TTGG-AAGTTATGTGGAAGATTAGTTCTTTATAATGTTGGAGTTTTGTTGTTTTAAGC
322 GTTG-TGTTGGTAAGTTGTGTGGAAGATTAGTTCTTTATAAGGTTGGGGTTTTGTTGTTTTAAGC
* ** * *
33821172 AAAAAAA-TCTGTAGATTAATGATTTTATGATAGATATAGTGTTGTGTTTGGTTGTTGTAGATAG
386 AAAAAAATTC-GTAGATTAATGATTTTATGATTGATATAGTGTTGTGGCTGATTGTTGTGGATAG
* * * * * *
33821236 GAGAAGTGCACGTGGTGGTAGACAACCCTCCGAAAAATTAAAGTTTTGGAGTAGTTGTAGCAAGT
450 GAGAAGAGCGCGTGGTGATAGACAA-CCTCCGACAAATTAAGGTTTTGGAGTAGTTGTTGCAAGT
* * * *
33821301 TTGTGGTAACTACTTGTTTATGAATATAGGGACTGTTTCTTTGAGAAAAGAGTGACTGTAAGTCG
514 TTGTGGTAACTACTTGTTTATGAATATAGGGACTGTTTCTTTGAGAAAAGAGCGAATTTAAGTGG
* * *
33821366 TAATGGTCGTGTTAAATTGAAGTTGTAATCGTTGGTTTTGGTGCCGTTTGTAGGATTTTAAGTGT
579 TAATGTTCGTGTTAAATCGAAGTTGTAATCGTTGGTTTTGGTGCCGATTGTAGGATTTTAAGTGT
* * * *
33821431 ACAAATGCGTGGTGGATTAATGTCACTATCAGGTGTGTGAAAACAATCCGAAAACTCGATAGAAA
644 ACGACTGCGTGGTGGATTAATGTCGCTATCAGGTGTGTGAAAACAATCCTAAAACTCGATAGAAA
* * * * * * * *
33821496 CTCGTTAAATCGTGAAACATGTGCTATTTTACTAAACTACCTAGTGCCACAAGGCCGTT
709 CTCGTTAAATCGTGAAACAGGGGCTATTTTTCGAAACTGCCTAGTGCCACACGGCTGTG
* * * * * * *
33821555 TGTCAGGCCGTGTGGTAGATTGTGAGCGACACACAACCGTGAAATTTTAATTTCTAAAATCAAAT
1 TGTCAGGCCGTGTGGTAGATTGTGTGTGTCACACGACCGTGTAATTTTATTTTTTAAAATCAAAT
* * *
33821620 CCCTATTATTTTTCTCTTTCAGCAACCGTCAAACCAACTTCTCTTCGGTTGCATGTTTCTTTCCC
66 CCCTATTATTTTTCTCTTTCGGCAACCGTCAAACCAACTTCTCTTTGGTTGCACGTTTCTTTCCC
* * * *
33821685 TTCTTTCAAATTTGTTTTACA-TTTTTCCTTCTTTTCCTCTTTTTTTCCCTTTTTTTTCACCTTG
131 TTCTTTC-AATTTGTTTTACATTTTTTCTTTCTTTTCTTCTTTCTTT-CCTTCTTTTTCACCTTG
* * *
33821749 CCAACGTCGGCTCCTTCTTTTGTTTTTGAT-CCAATTGAGAAATCTTTCTTTTGTTGCGTAAGAA
194 CCAACGTCGACTCCTTCTTTTGTTATTG-TGCCAATTGCGAAATCTTTCTTTTGTTGCGTAAGAA
* * *
33821813 CACTGTTGAGGCTTGTTATGATTCTGTTGTTTGCTTGTTTTTTTCTTTTCCTCAT-GTGGCTTGG
258 CACTGTTGAGGCTTGTTATGATTCTGTTGTTCGCTTGTTTCTTTCTTTTCCTCGTGGTGGCTTGG
* * * *
33821877 TTGTGTTGGTAAGTTGTGTGCAATATTAGTTCTTTATAAGGTTGGGGTTTTGTT-TTTTAAGTAG
323 TTGTGTTGGTAAGTTGTGTGGAAGATTAGTTCTTTATAAGGTTGGGGTTTTGTTGTTTTAAGCAA
* * * * *
33821941 AAAAATCCGTAGATTAATGATTTTATGATAGATATAGTGTAGTGGCTGATTGTTTTGGATATGAG
388 AAAAATTCGTAGATTAATGATTTTATGATTGATATAGTGTTGTGGCTGATTGTTGTGGATAGGAG
* * ** * *
33822006 AAGAGTGCGTAGTGATAGACAACTCTCTAACAAATTAAGGTTTTGGAGTAGTTATTGCATGTTTG
453 AAGAGCGCGTGGTGATAGACAAC-CTCCGACAAATTAAGGTTTTGGAGTAGTTGTTGCAAGTTTG
* * * *
33822071 TGGTAACTACTTGTTTAGGAATATAGGGATTGCTTCTCTGAGAAAAGAGCGAATTTAAGTGGTAA
517 TGGTAACTACTTGTTTATGAATATAGGGACTGTTTCTTTGAGAAAAGAGCGAATTTAAGTGGTAA
** * * * * * *
33822136 CATTCGTGTTAAATCGAAGATCTAATCGTTTGTTTTGGGGCC-ATTTTTTAGTATTTTAAGTGTA
582 TGTTCGTGTTAAATCGAAGTTGTAATCGTTGGTTTTGGTGCCGA--TTGTAGGATTTTAAGTGTA
* * * *
33822200 CGACTGCGTGGTGGATTGATGTTGCTATCAGGTGTTTGAAAACAATCCTAAAACTCGATAAAAAC
645 CGACTGCGTGGTGGATTAATGTCGCTATCAGGTGTGTGAAAACAATCCTAAAACTCGATAGAAAC
* * * * *
33822265 TCGTTAAATCGTGAAACAGAGGCTATTTTTTGAAACTACCCAGTGGCACACGG-TCGTG
710 TCGTTAAATCGTGAAACAGGGGCTATTTTTCGAAACTGCCTAGTGCCACACGGCT-GTG
* * ** * *
33822323 TGTCAGGCTGTATGGTAGATTGTGTGTGTCACAC-AGCTTTGTGATTTTATTTTTTTAAATCAAA
1 TGTCAGGCCGTGTGGTAGATTGTGTGTGTCACACGA-CCGTGTAATTTTATTTTTTAAAATCAAA
* * * *
33822387 TCCCTATTATTTTTCTCTTTCGACAACTGTCAAACCAACTTCTCTTTGGTTGAACGTTTCTTTCA
65 TCCCTATTATTTTTCTCTTTCGGCAACCGTCAAACCAACTTCTCTTTGGTTGCACGTTTCTTTCC
* * *
33822452 CTTCCTTCATTTTTGTTTTACATATTTTTCTTTCTTTTCTTCTTTATTTCCTTCTTTTTCACCTT
130 CTTCTTTCA-ATTTGTTTTACAT-TTTTTCTTTCTTTTCTTCTTTCTTTCCTTCTTTTTCACCTT
* *
33822517 GCCAACGTCGGCTCCTTCTTTTGTTATTGTGCCAATTGCGAAATCTTTCTTTTGTTGTGTAAGAA
193 GCCAACGTCGACTCCTTCTTTTGTTATTGTGCCAATTGCGAAATCTTTCTTTTGTTGCGTAAGAA
* ** * *
33822582 CACTGTTGAGGCTTTTTATGATTCTGTTGTTCGCTCATGTCTTTCTTTTCCTCGTGGTGGCCTGG
258 CACTGTTGAGGCTTGTTATGATTCTGTTGTTCGCTTGTTTCTTTCTTTTCCTCGTGGTGGCTTGG
* * *
33822647 TTATGTTGGTAAGTTGTGTGGAAGATTAGTTTTTTATAAGGTTGGGGTTTTGTTGTTTTAAGGAA
323 TTGTGTTGGTAAGTTGTGTGGAAGATTAGTTCTTTATAAGGTTGGGGTTTTGTTGTTTTAAGCAA
* * * *
33822712 AAAAATTCGTAGATTAATTATTTTATGATTGATATAGTGTTGTGGCTGGTTGTTCTCGATAGGAG
388 AAAAATTCGTAGATTAATGATTTTATGATTGATATAGTGTTGTGGCTGATTGTTGTGGATAGGAG
* * * *
33822777 AAGAACGCGTGGTGATAGACAATCCTTCGAGAAATTAAGGTTTTGGAGTAGTTGCTGCAAGTTTG
453 AAGAGCGCGTGGTGATAGACAA-CCTCCGACAAATTAAGGTTTTGGAGTAGTTGTTGCAAGTTTG
* * * * * *
33822842 TGGTAGCTACTTCTTTGTGAATATAAGGTA-TTTTTCTTTGAGAAAAGAGTGAATTTAAGTGGTA
517 TGGTAACTACTTGTTTATGAATAT-AGGGACTGTTTCTTTGAGAAAAGAGCGAATTTAAGTGGTA
* * *
33822906 ATATTCGTGTCT-AATTGAAGTTGTAATCGTTGGTTTTGGTGTC-ATTCGTAGGATTTTAAGTGT
581 ATGTTCGTGT-TAAATCGAAGTTGTAATCGTTGGTTTTGGTGCCGATT-GTAGGATTTTAAGTGT
* * * * ** * *
33822969 ATGACTTCGTGGTGGATTAATCTCGCTATCATGTGTAAGAAAACAATCCTAAAACTCAAGAGAAA
644 ACGACTGCGTGGTGGATTAATGTCGCTATCAGGTGTGTGAAAACAATCCTAAAACTCGATAGAAA
* * ** * * * * * **
33823034 CTCGTTAAGTCGTGAAACAGGGGTTGGTTTCCAAAACTGCCCTA-TGCGACACAGCAGCA
709 CTCGTTAAATCGTGAAACAGGGGCTATTTTTCGAAACTG-CCTAGTGCCACACGGCTGTG
* * * * ** * * * *
33823093 TGTCTGGCCGTGTGGTAGATTTTCTGTGCCACTTGGCTGTTTAATTTTATTTTTTAAAATCATAT
1 TGTCAGGCCGTGTGGTAGATTGTGTGTGTCACACGACCGTGTAATTTTATTTTTTAAAATCAAAT
* * * *
33823158 CCCTATTATTTTTCTCATTCTGCAACAGTCAAACCAACTTCTCTTCGGTTGCACGTTTCTTTCCC
66 CCCTATTATTTTTCTCTTTCGGCAACCGTCAAACCAACTTCTCTTTGGTTGCACGTTTCTTTCCC
* *
33823223 TTCTTTCAAATTTGTTTT--A--TTAT-TTTC---T-TTCTTTC--T--TTCTTTTTCGCCTTG-
131 TTCTTTC-AATTTGTTTTACATTTTTTCTTTCTTTTCTTCTTTCTTTCCTTCTTTTTCACCTTGC
* * * *
33823274 CAACGCCAACACCTTCTTTTGTTATTGTGCCAATTGCAAAATCTTTCTTTTGTTGCGTAAGAACA
195 CAACGTCGACTCCTTCTTTTGTTATTGTGCCAATTGCGAAATCTTTCTTTTGTTGCGTAAGAACA
* * *
33823339 CTGTTGAGGCTTGTTATGATTTTGTTGTTTGCTTGTTTCTTTCTGTTCCTCGTGGTGGCTTGGTT
260 CTGTTGAGGCTTGTTATGATTCTGTTGTTCGCTTGTTTCTTTCTTTTCCTCGTGGTGGCTTGGTT
* * *
33823404 GTGGTGGTAAGGTT-TGTTGAAGATTAGTTCTTTATAAGGTTGGGGTTTTGTTATTTTAAGCAAA
325 GTGTTGGTAA-GTTGTGTGGAAGATTAGTTCTTTATAAGGTTGGGGTTTTGTTGTTTTAAGCAAA
* * *
33823468 AAAAATCGTAGATTAATGATTTTAGGATTGATATAGTGTAGTGGCT-AGTTGTTGTGGATA
389 AAAATTCGTAGATTAATGATTTTATGATTGATATAGTGTTGTGGCTGA-TTGTTGTGGATA
33823528 AGAAAAGCAA
Statistics
Matches: 3656, Mismatches: 534, Indels: 163
0.84 0.12 0.04
Matches are distributed among these distances:
755 222 0.06
756 24 0.01
757 333 0.09
758 13 0.00
759 186 0.05
760 112 0.03
761 3 0.00
762 1 0.00
763 1 0.00
764 25 0.01
765 154 0.04
766 209 0.06
767 242 0.07
768 1228 0.34
769 353 0.10
770 337 0.09
771 207 0.06
772 6 0.00
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (767 bp):
TGTCAGGCCGTGTGGTAGATTGTGTGTGTCACACGACCGTGTAATTTTATTTTTTAAAATCAAAT
CCCTATTATTTTTCTCTTTCGGCAACCGTCAAACCAACTTCTCTTTGGTTGCACGTTTCTTTCCC
TTCTTTCAATTTGTTTTACATTTTTTCTTTCTTTTCTTCTTTCTTTCCTTCTTTTTCACCTTGCC
AACGTCGACTCCTTCTTTTGTTATTGTGCCAATTGCGAAATCTTTCTTTTGTTGCGTAAGAACAC
TGTTGAGGCTTGTTATGATTCTGTTGTTCGCTTGTTTCTTTCTTTTCCTCGTGGTGGCTTGGTTG
TGTTGGTAAGTTGTGTGGAAGATTAGTTCTTTATAAGGTTGGGGTTTTGTTGTTTTAAGCAAAAA
AATTCGTAGATTAATGATTTTATGATTGATATAGTGTTGTGGCTGATTGTTGTGGATAGGAGAAG
AGCGCGTGGTGATAGACAACCTCCGACAAATTAAGGTTTTGGAGTAGTTGTTGCAAGTTTGTGGT
AACTACTTGTTTATGAATATAGGGACTGTTTCTTTGAGAAAAGAGCGAATTTAAGTGGTAATGTT
CGTGTTAAATCGAAGTTGTAATCGTTGGTTTTGGTGCCGATTGTAGGATTTTAAGTGTACGACTG
CGTGGTGGATTAATGTCGCTATCAGGTGTGTGAAAACAATCCTAAAACTCGATAGAAACTCGTTA
AATCGTGAAACAGGGGCTATTTTTCGAAACTGCCTAGTGCCACACGGCTGTG
Found at i:33823937 original size:12 final size:12
Alignment explanation
Indices: 33823922--33823956 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
33823912 TTTGTTTTAA
*
33823922 TTTTTTTCTTTC
1 TTTTCTTCTTTC
33823934 TTTTCTTCTTTC
1 TTTTCTTCTTTC
*
33823946 TTTCCTTCTTT
1 TTTTCTTCTTT
33823957 TTCACATAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTCTTCTTTC
Found at i:33825335 original size:41 final size:41
Alignment explanation
Indices: 33825273--33825372 Score: 173
Period size: 41 Copynumber: 2.4 Consensus size: 41
33825263 GAAAATGCCC
* *
33825273 AGTGCCACACGGTCGTGTGTCAGGCCGTATTCTAGATTGTT
1 AGTGTCACACGGCCGTGTGTCAGGCCGTATTCTAGATTGTT
33825314 AGTGTCACACGGCCGTGTGTCAGGCCGTATTCTAGATTGTT
1 AGTGTCACACGGCCGTGTGTCAGGCCGTATTCTAGATTGTT
*
33825355 AGTGTCACACGTCCGTGT
1 AGTGTCACACGGCCGTGT
33825373 AATTTTATTT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 56 1.00
ACGTcount: A:0.17, C:0.23, G:0.29, T:0.31
Consensus pattern (41 bp):
AGTGTCACACGGCCGTGTGTCAGGCCGTATTCTAGATTGTT
Found at i:33827427 original size:769 final size:762
Alignment explanation
Indices: 33823791--33827470 Score: 3731
Period size: 755 Copynumber: 4.8 Consensus size: 762
33823781 TGTGTGGTAC
* * *
33823791 ATTGTGTGCGTCACACGACCGTGTAATTTTATTTTTGT-AAATCAAAT-CCTATTATTTTTCTCT
1 ATTGTGTGAGCCACACGGCCGTGTAATTTTATTTTT-TAAAATCAAATCCCTATTATTTTTCTCT
* * *
33823854 TTCGGCAACCGTCAAACCAACCTCTCTTTGGTTGCACGTTTCTTT-CCTTTCTTTCAATTTTGTT
65 TTCGGCAACCGTCAAACCAACTTCTCTTTGGTTGCACATTTCTTTCCCTTT-TTTCAATTTTCTT
* * *
33823918 TTAATTTTTTTCTTTCTTTTCTTCTTTCTTTCCTTCTTTTTC-ACATAGCCAACACCGACTCCTT
129 TT-A-TTTTTTCCTTCTTTTCTTCTTT-TTTCCTTCTTTTTCGAC-TTGCCAACGCCGACTCCTT
* * * *
33823982 CTTTTGTTAATGTGCCAATTGCAAAATCTTTATTTTGTTGCTTAAGAACATTGTTGAGGCTTGTT
190 CTTTTGTTATTGTGCCAATTGCAAAATCTTTCTTTTGTTGCGTAAGAACACTGTTGAGGCTTGTT
* * *
33824047 ATGATTCTGCTGTTCGCTTGTTTCTTTCTTTTCCTCGTGGTGGCTTGGTTGTGTTGGTAAGTTGT
255 ATGATTATGTTGTTCGCTTGTTTCTTTCTTTTCCTCGTGGTGGCTTGGTTGTGTTGGTAAGTTTT
* *
33824112 GTGGAAGATTAGTTCTTTATAAGGTTGGGGTTTTGTTGTTGTAAGCAATAAAGTCCGTAGATTAA
320 GTGGAAGATTAGTTCTTTATAAGGTT-GGG-TTTGTTGTTTTAAGCAA-AAAATCCGTAGATTAA
* * * * * * * * * *
33824177 TGATTTTAT-GATATATATAGTGTTGTTGTTGGTTATTTTGAATATGAGAAGAGTGTGTGGTGAT
382 TGATTTT-TGGATAGATATAGTGTTGTGGCTAGTTGTTGTGGATAGGAGAAGAGCGCGTGGTGAT
* * ** *
33824241 AGACAACCCTCCAAAAAATTAAGGTTTTGGAGTAGTTGCTGCAAGTTTGTGGTAACTAATTGTTT
446 AGACAATCCTCCGAAAAATTAAGGTTTTGGAGTAGTTATTGCAAGTTTGTGGTAACTACTTGTTT
* * * * * * * * *
33824306 ATGAATATAGGGACTATTTATTTGGGAAAAGATCGAATGTAAGTGGTAATGTTCGTGTTAAAT-T
511 ATGAATATAAGGACTGTTTCTTTGAGAAAAGAGCAAATTTAAGTGGTAATATTCGTGTTAAATCG
* * * * * * *
33824370 AGAGTTGTAATCGTTGG-TTTGTGTGGCATTTATAGGATTTTAAGTGTACGACTACGTGGTGGAT
576 A-AGTTGTAATCGTTGGTTTTG-GTGCCATTTGTAAGATTTTAAGTGTACAATTGCATGGTGGAT
** * * *
33824434 TAATCTTGCTATCAGGTGTGTA-AAAACAATCCAAAAACTC-GGTAGAAACTCGTTAAATCGTGA
639 TAATCTCACTATCAGGTGCG-AGAAAACAATCCTAAAACTCAAG-AGAAACTCGTTAAATCGTGA
* * * * * * * * * *
33824497 AACATGAGCTCTTTTTTGAAACTGCCTAGTGCCGCA--CAACCCTATGTCAGGCTGTGTGGTAG
702 AACATGGGGTGTTTTTCGAAACTACCCAGTGCCACAGGCAA--C-ATGTCAGGCCGTATGGCAG
* * * ** *
33824559 AATGTGGGCGCTGCACGACCGTGTAATTTTATTTTTT-AAATCAAATCCCTATTATTTTTCTCTT
1 ATTGTGTGAGCCACACGGCCGTGTAATTTTATTTTTTAAAATCAAATCCCTATTATTTTTCTCTT
*** * * * * * *
33824623 TTTACAACTGTTAAACCAACTTCTCTTTGGTTACA-AGTTTCTTTCCCTTCTTTCGATTTTGTTT
66 TCGGCAACCGTCAAACCAACTTCTCTTTGGTTGCACA-TTTCTTTCCCTTTTTTCAATTTTCTTT
** * * * *
33824687 TA----------C----AAT-TTTTTTCCTTTTTTTTCGCCTTTCCAACACCGACTCCTTCTTTT
130 TATTTTTTCCTTCTTTTCTTCTTTTTTCCTTCTTTTTCGACTTGCCAACGCCGACTCCTTCTTTT
* * *
33824737 GTTATTGTGCCAATTGCAAAATCTTTCTTTTGTTGTGTAAGATCACTGTTGGGGCTTGTTATGAT
195 GTTATTGTGCCAATTGCAAAATCTTTCTTTTGTTGCGTAAGAACACTGTTGAGGCTTGTTATGAT
* * * * * * *
33824802 TCTGTTGTTCGCTTATTTCTTTCTTTTCCTTGTGGTAGCCTGGTTGTGTTGGAAAGTTGT-TGGA
260 TATGTTGTTCGCTTGTTTCTTTCTTTTCCTCGTGGTGGCTTGGTTGTGTTGGTAAGTTTTGTGGA
* *
33824866 AGGTTAGTTCTTGATAAGGTTGGGGTTTTGTTGTTTTAA-CAAAAAAAAATCCGTAGATTAATGA
325 AGATTAGTTCTTTATAAGGTT-GGG-TTTGTTGTTTTAAGC---AAAAAATCCGTAGATTAATGA
* *
33824930 -TTTTGTGATAGAGATAGTGTTGTGGCTAGTTGTTGTGGATAGGAGAAGAGCGAGTGGTGATAGA
385 TTTTTG-GATAGATATAGTGTTGTGGCTAGTTGTTGTGGATAGGAGAAGAGCGCGTGGTGATAGA
* * ** * *
33824994 CAA-CTCTCTGACAAATTAAGGTTTTGGAGTAGTTGCTGCAAGTTTGTGCTAACTACTTGTTAAT
449 CAATC-CTCCGAAAAATTAAGGTTTTGGAGTAGTTATTGCAAGTTTGTGGTAACTACTTGTTTAT
* ** * * *
33825058 GAATAT-AGGACTGTTTCTTTGAGAAAAGAGCGAATTTAAGTGGTAATGGTCATGTTAATTCAAA
513 GAATATAAGGACTGTTTCTTTGAGAAAAGAGCAAATTTAAGTGGTAATATTCGTGTTAAATCGAA
* * * * * * *
33825122 GTTGTAATCATTGGTTTTGGTGCTATTTGTAGGATTTTACA-TGTACGACTACGTGGTGGATTAA
578 GTTGTAATCGTTGGTTTTGGTGCCATTTGTAAGATTTTA-AGTGTACAATTGCATGGTGGATTAA
* * * * * * *
33825186 TCTCGCTATCAGGTGTGTGAAAACAATCCTAAAACTCGATAGAAACTCGTTGAATCATGAAACA-
642 TCTCACTATCAGGTGCGAGAAAACAATCCTAAAACTCAAGAGAAACTCGTTAAATCGTGAAACAT
* * *** *
33825250 GGGGATGTTTTTCGAAAATGCCCAGTGCCACACGGTC-GTGTGTCAGGCCGTAT-TCTAG
707 GGGG-TGTTTTTCGAAACTACCCAGTGCCACA-GG-CAACATGTCAGGCCGTATGGC-AG
*
33825308 ATTGTTAGTGTCACACGGCCGTGTGTCAGGCCGTATTCTAGATTGTTAGTGTCACACGTCCGTGT
1 ATTG-T-GTG----A--G-C------CA---C--A--C----------G-G---C-CGT--GT-A
* *
33825373 AATTTTATTTTTTTAAATCAAATCCCTATTATTTTTCTCTTTCGGCAACCGTCAAACCAACTTCT
26 ATTTT-ATTTTTTAAAATCAAATCCCTATTATTTTTCTCTTTCGGCAACCGTCAAACCAACTTCT
* *
33825438 CTTTGGTTGCACGTTTC-TTCCCTTCTTTCAATTTTCTTTTACATTTTTTCCTTCTTTTCTTCTT
90 CTTTGGTTGCACATTTCTTTCCCTTTTTTCAATTTTCTTTT--ATTTTTTCCTTCTTTTCTTCTT
* * * * *
33825502 TCTTTCCTTCTTTCTC-ACATTGCCAACGCCGGCTCCTTCATTTT-TTATTGTGCAAATTACAGA
153 T-TTTCCTTCTTTTTCGAC-TTGCCAACGCCGACTCCTTC-TTTTGTTATTGTGCCAATTGCAAA
* *
33825565 ATCTTTCTTTTGTTGCGTAAGAACATTGTTGAGGCTTGTTATGATTCTGTTGTTCGCTTGTTTCT
215 ATCTTTCTTTTGTTGCGTAAGAACACTGTTGAGGCTTGTTATGATTATGTTGTTCGCTTGTTTCT
* *
33825630 TTCTTTTCCTCGTGGTGGCTTGGTTGTGTTGGTAAGTTGTGTGGAAGATGAGTTCTTTATAAGGT
280 TTCTTTTCCTCGTGGTGGCTTGGTTGTGTTGGTAAGTTTTGTGGAAGATTAGTTCTTTATAAGGT
* *
33825695 TGGGGTATTGTTGTTTTAAGCAGAAAAATTCGTAGGTTAATGATTTTAT-GATAGATATAGTGTT
345 T-GGGT-TTGTTGTTTTAAGCA-AAAAATCCGTAGATTAATGATTTT-TGGATAGATATAGTGTT
* * * *
33825759 GTGG-TTGATTGTTGTGGATATGAGAAGAGCGCGTAGTGATAGACAA-CTCTCCGAGAAATTAAG
406 GTGGCTAG-TTGTTGTGGATAGGAGAAGAGCGCGTGGTGATAGACAATC-CTCCGAAAAATTAAG
* * *
33825822 GTTTTGGAGTAGTTGTTGGAAGTTTGTGGTAACTACTTGTTTATGAATATAGGGACTGTTTCTTT
469 GTTTTGGAGTAGTTATTGCAAGTTTGTGGTAACTACTTGTTTATGAATATAAGGACTGTTTCTTT
* * * *
33825887 GAGAAAAGAGCGAATTTATGTGGTAACATTCGTGTTAAATCGAAGTTGTAATCGTTTGTTTTGGT
534 GAGAAAAGAGCAAATTTAAGTGGTAATATTCGTGTTAAATCGAAGTTGTAATCGTTGGTTTTGGT
* * * * *
33825952 GCCGTTTGTAAGATTTTAAGTGTACAATTGCGTGGTGGATTAATGTCACTATCAGGTGTGTGAAA
599 GCCATTTGTAAGATTTTAAGTGTACAATTGCATGGTGGATTAATCTCACTATCAGGTGCGAGAAA
** * * * *
33826017 ATGATCCTAAAACTCGATAGAAAGTCGTTAAATCGTGAAACATGGGGTGTTTTTCGAAACTGCCC
664 ACAATCCTAAAACTCAAGAGAAACTCGTTAAATCGTGAAACATGGGGTGTTTTTCGAAACTACCC
**** * *
33826082 AGTGCCACATGGCCTTGTGTCAGGTCGTATGGTAG
729 AGTGCCACA-GGCAACATGTCAGGCCGTATGGCAG
* * *
33826117 ATTGTGTGAGTCACACGGTCGTGTAATTTTATTTTTTTGAAATCAAATCCCTATTATTTTTTCTC
1 ATTGTGTGAGCCACACGGCCGTGTAATTTTA-TTTTTTAAAATCAAATCCCTATTA-TTTTTCTC
33826182 TTTCGGCAACCGTCAAACCAACTTCTCTTTGGTTGCACATTTCTTTCCCTTCTTTT-AATTTTCT
64 TTTCGGCAACCGTCAAACCAACTTCTCTTTGGTTGCACATTTCTTTCCCTT-TTTTCAATTTTCT
** * * * * *
33826246 TTTACATTTT-GTT-ATTTCTTC----TT--TTCTTTTTCGCCTTGCCAAAGTCGACTCCTTCTT
128 TTTATTTTTTCCTTCTTTTCTTCTTTTTTCCTTCTTTTTCGACTTGCCAACGCCGACTCCTTCTT
* * * **
33826303 TTGTTATTGTGCCAATTGCAAAATCTATCTTCTGTTGCGTAAGAACACTATTGAATCTTGTTATG
193 TTGTTATTGTGCCAATTGCAAAATCTTTCTTTTGTTGCGTAAGAACACTGTTGAGGCTTGTTATG
** * *
33826368 ATTATGTTGTTCGCTAATTTCTTTCTTTTCCTCGTAGTGGCTTGGTTATGTTGGTAAGTTGTT-T
258 ATTATGTTGTTCGCTTGTTTCTTTCTTTTCCTCGTGGTGGCTTGGTTGTGTTGGTAAGTT-TTGT
* * *
33826432 GGAAGATTAGTTCTTTATAATGTTGGG-TT-TT-TTTTCAGCAAAAAAATCCGTAGATTAATGGT
322 GGAAGATTAGTTCTTTATAAGGTTGGGTTTGTTGTTTTAAGC-AAAAAATCCGTAGATTAATGAT
* * * *
33826494 ATTATGG-TAGATATCGTGTTGTGGCTGGTGGTTGTGGATAGGAGAAGAGCGCGTGGTGATAGAC
386 -TTTTGGATAGATATAGTGTTGTGGCTAGTTGTTGTGGATAGGAGAAGAGCGCGTGGTGATAGAC
* ** *
33826558 AATCCTTCGAAAAATTAAGGTTTTGGAGTAACTACTGCAAGTTTGTGGTAACTACTTGTTTATGA
450 AATCCTCCGAAAAATTAAGGTTTTGGAGTAGTTATTGCAAGTTTGTGGTAACTACTTGTTTATGA
* *
33826623 ATATAAGGACTGTTTCTTTGAGAAAAGAGCAAATTTAAGTGGTAATATTCGTGTTAAATCAAAAT
515 ATATAAGGACTGTTTCTTTGAGAAAAGAGCAAATTTAAGTGGTAATATTCGTGTTAAATCGAAGT
* * * *
33826688 TGTATTCGTTGGTTTTGGTGTCATTTGTAGGATTTTAAGTGTATGAATT-CATGGTGGATTAATC
580 TGTAATCGTTGGTTTTGGTGCCATTTGTAAGATTTTAAGTGTA-CAATTGCATGGTGGATTAATC
* * * * *
33826752 TCGCTATTATGTGCGAGAAAGCAATCCTAAAACTCAAGAGAAACTCGTTAAATCTTGAAACA-GG
644 TCACTATCAGGTGCGAGAAAACAATCCTAAAACTCAAGAGAAACTCGTTAAATCGTGAAACATGG
* ** * *
33826816 GTTTGGTTTTT-GAAACTACCTTGTGCGTCACA-GCAACATGTCTGGCCGTGTGGCAG
709 G-GT-GTTTTTCGAAACTACCCAGTGC--CACAGGCAACATGTCAGGCCGTATGGCAG
* * ** * *
33826872 ATTTTGTGCGCCACTTGGCCGTTTAATTTTATTTTTTAAAATCATATCCCTATTATTTTTCTCTT
1 ATTGTGTGAGCCACACGGCCGTGTAATTTTATTTTTTAAAATCAAATCCCTATTATTTTTCTCTT
** ** *
33826937 TTAGCAACCGTCAAACCAACTTCTCTTCAGTTGCACATTTCTTTCCCTTTTTTCAATTTTGTTTT
66 TCGGCAACCGTCAAACCAACTTCTCTTTGGTTGCACATTTCTTTCCCTTTTTTCAATTTTCTTTT
* * *
33827002 ATTTTTTTTCTTTCTTTTCTTCTTTGTTTCCTTCTTTTTCGGCTTGCCAACGCCGACACCTTCTT
131 A--TTTTTTCCTTCTTTTCTTCTTT-TTTCCTTCTTTTTCGACTTGCCAACGCCGACTCCTTCTT
*
33827067 TTGTTATTGTGCCAATTGCAAAATCTTTCTTTTATTGCGTAAGAACACTGTTGAGGCTTGTTATG
193 TTGTTATTGTGCCAATTGCAAAATCTTTCTTTTGTTGCGTAAGAACACTGTTGAGGCTTGTTATG
* * * * * *
33827132 ATTTTGTTGTTCGTTTGTTACTTTCTGTTCCTCGTGGAGGCTTGGTTGTGGTGGTAAGTTTTGTG
258 ATTATGTTGTTCGCTTGTTTCTTTCTTTTCCTCGTGGTGGCTTGGTTGTGTTGGTAAGTTTTGTG
* *
33827197 GAAGATTAGTTCTTTATAAGGTTGGGATTTTGTTGTTTTAAGTAAAAATATCCGTAGATTAATGC
323 GAAGATTAGTTCTTTATAAGGTTGGG--TTTGTTGTTTTAAGCAAAAA-ATCCGTAGATTAATGA
* *
33827262 TTTTTGGATTGATATAGTGTAGTGGCTAGTTGTTGTGGATAGGAGAAGAGC-CTGTGGTGATAGA
385 TTTTTGGATAGATATAGTGTTGTGGCTAGTTGTTGTGGATAGGAGAAGAGCGC-GTGGTGATAGA
*
33827326 TAATCCTCCGAAAAATTAAGGTTTTGGAGTAGTTATTGCAAGTTTGTGGTAACTACTTGTTTATG
449 CAATCCTCCGAAAAATTAAGGTTTTGGAGTAGTTATTGCAAGTTTGTGGTAACTACTTGTTTATG
* * * * * * *
33827391 AGTATAAGGACTGTTTCATTGAGATAAGAGCAAATTTCAGTGGTAATGTTTGTGCTAAATCGAAG
514 AATATAAGGACTGTTTCTTTGAGAAAAGAGCAAATTTAAGTGGTAATATTCGTGTTAAATCGAAG
33827456 TTGTAATCGTTGGTT
579 TTGTAATCGTTGGTT
33827471 GATGGTTGTC
Statistics
Matches: 2455, Mismatches: 323, Indels: 267
0.81 0.11 0.09
Matches are distributed among these distances:
748 4 0.00
749 236 0.10
750 281 0.11
751 8 0.00
752 5 0.00
753 67 0.03
754 25 0.01
755 348 0.14
756 22 0.01
757 14 0.01
758 1 0.00
759 7 0.00
760 156 0.06
761 2 0.00
762 4 0.00
763 2 0.00
764 166 0.07
767 21 0.01
768 113 0.05
769 238 0.10
770 52 0.02
771 19 0.01
772 6 0.00
776 1 0.00
777 1 0.00
781 1 0.00
785 1 0.00
786 3 0.00
787 1 0.00
788 2 0.00
789 5 0.00
790 28 0.01
791 61 0.02
792 1 0.00
794 2 0.00
801 1 0.00
802 1 0.00
803 1 0.00
806 1 0.00
807 10 0.00
808 277 0.11
809 254 0.10
810 6 0.00
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (762 bp):
ATTGTGTGAGCCACACGGCCGTGTAATTTTATTTTTTAAAATCAAATCCCTATTATTTTTCTCTT
TCGGCAACCGTCAAACCAACTTCTCTTTGGTTGCACATTTCTTTCCCTTTTTTCAATTTTCTTTT
ATTTTTTCCTTCTTTTCTTCTTTTTTCCTTCTTTTTCGACTTGCCAACGCCGACTCCTTCTTTTG
TTATTGTGCCAATTGCAAAATCTTTCTTTTGTTGCGTAAGAACACTGTTGAGGCTTGTTATGATT
ATGTTGTTCGCTTGTTTCTTTCTTTTCCTCGTGGTGGCTTGGTTGTGTTGGTAAGTTTTGTGGAA
GATTAGTTCTTTATAAGGTTGGGTTTGTTGTTTTAAGCAAAAAATCCGTAGATTAATGATTTTTG
GATAGATATAGTGTTGTGGCTAGTTGTTGTGGATAGGAGAAGAGCGCGTGGTGATAGACAATCCT
CCGAAAAATTAAGGTTTTGGAGTAGTTATTGCAAGTTTGTGGTAACTACTTGTTTATGAATATAA
GGACTGTTTCTTTGAGAAAAGAGCAAATTTAAGTGGTAATATTCGTGTTAAATCGAAGTTGTAAT
CGTTGGTTTTGGTGCCATTTGTAAGATTTTAAGTGTACAATTGCATGGTGGATTAATCTCACTAT
CAGGTGCGAGAAAACAATCCTAAAACTCAAGAGAAACTCGTTAAATCGTGAAACATGGGGTGTTT
TTCGAAACTACCCAGTGCCACAGGCAACATGTCAGGCCGTATGGCAG
Found at i:33827710 original size:15 final size:15
Alignment explanation
Indices: 33827692--33827722 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
33827682 GTAAAAGCTG
33827692 AAAATAATTAAATAA
1 AAAATAATTAAATAA
*
33827707 AAAATAGTTAAATAA
1 AAAATAATTAAATAA
33827722 A
1 A
33827723 TCTGAAGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (15 bp):
AAAATAATTAAATAA
Found at i:33829536 original size:5 final size:5
Alignment explanation
Indices: 33829526--33829581 Score: 60
Period size: 5 Copynumber: 11.0 Consensus size: 5
33829516 GTCTACTTGC
* **
33829526 AAAAT AAAAT AAAAT AAAAT AGAA- GGAAT AAAAAT AAAAT AAAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT AAAAT -AAAAT AAAAT
33829577 AAAAT
1 AAAAT
33829582 GTGTAATTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
4 3 0.07
5 33 0.75
6 8 0.18
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:33829568 original size:11 final size:11
Alignment explanation
Indices: 33829526--33829580 Score: 67
Period size: 11 Copynumber: 4.8 Consensus size: 11
33829516 GTCTACTTGC
33829526 AAAAT-AAAAT
1 AAAATAAAAAT
*
33829536 AAAATAAAATAG
1 AAAATAAAA-AT
33829548 AAGGAATAAAAAT
1 AA--AATAAAAAT
33829561 AAAATAAAAAT
1 AAAATAAAAAT
33829572 AAAATAAAA
1 AAAATAAAA
33829581 TGTGTAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
10 5 0.13
11 21 0.54
12 3 0.08
13 3 0.08
14 7 0.18
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.16
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:33833773 original size:16 final size:16
Alignment explanation
Indices: 33833752--33833783 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
33833742 GTAAAAGCTG
33833752 AAAACAATTAAATAAA
1 AAAACAATTAAATAAA
*
33833768 AAAACAGTTAAATAAA
1 AAAACAATTAAATAAA
33833784 TCTGAAGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.72, C:0.06, G:0.03, T:0.19
Consensus pattern (16 bp):
AAAACAATTAAATAAA
Found at i:33836047 original size:12 final size:12
Alignment explanation
Indices: 33836032--33836066 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
33836022 TTGTTTTACA
*
33836032 TTTTTTTCTTTC
1 TTTTCTTCTTTC
33836044 TTTTCTTCTTTC
1 TTTTCTTCTTTC
*
33836056 TTTCCTTCTTT
1 TTTTCTTCTTT
33836067 AAACCTTGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTTCTTCTTTC
Found at i:33836815 original size:12 final size:12
Alignment explanation
Indices: 33836800--33836833 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
33836790 TTGTTTTACA
*
33836800 TTTTTTTCTTTC
1 TTTTCTTCTTTC
33836812 TTTTCTTCTTTC
1 TTTTCTTCTTTC
*
33836824 TTTCCTTCTT
1 TTTTCTTCTT
33836834 ATACGCCTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTCTTCTTTC
Found at i:33837429 original size:770 final size:766
Alignment explanation
Indices: 33834950--33837432 Score: 3578
Period size: 768 Copynumber: 3.2 Consensus size: 766
33834940 TTTTAGCATT
* * * * *
33834950 TAATCATCGGTTTTGGTGTCATTTGTAGGATTTTAAGTGTATGACTTCGCGGTAGATTAATCTCG
1 TAATCATTGGTTTTGGTGTCGTTTGTAGGATTTTAAGTGTATGACTACGTGGTGGATTAATCTCG
* ** * ** * *
33835015 CTATCAGGTGTGTGAAAATAATATTAAAA-TTTGATAGAAACTTGTTAAATCGTGAAATAGAGGC
66 CTATCAGGTGTGTGAAAACAATCCTAAAACTCT-ATAGAAACTCATTAAATCGTGAAACAGGGGC
* *
33835079 TATTTTTCGAAACTGCCTAGTGCCACACGGCCCTGGGTCAGGCCGTGTGGTAGATTGTGTGCGTC
130 TATTTTTCGAAACTGCCTAGTGCCACACGGCCGTGTGTCAGGCCGTGTGGTAGATTGTGTGCGTC
* * * * * ** *
33835144 ACACGACCATGTACTTTTATTTTTTTAAATTAAATCCTTATTATTTTTCTCTTTCGATAACTGTC
195 ACACGACCGTGTAATTTTATTTTTTTAAATCAAATCCCTGTTATTTTTCTCTTTCGGCAACCGTC
* * * * * * *
33835209 AAACAAACTTCTTTTTGGTGGTACGTTTCTTTCCTTTCCTTCAATTTTGTTTTAAATTTTTTTAT
260 AAACCAACTTCTCTTTGGTTGCACGTTTCTTTCCCTT-CTTCAATTTTGTTTTACATTTTTTTCT
* *
33835274 TTCTTTTCTTCTTTCTTTCCTTCTTTTTCACCTTGCCAACGCCGAAT-C--CTTTTGTTATTGTG
324 TTCTTTTCTTCTTTCTTTCCTTC-TTTACACCTTGCCAACGCCGACTCCTTCTTTTGTTATTGTG
33835336 CCAATTGTAAAATCTTTCTTTTGTTGCGTAAGAACACTGTTGAGGCTTGTTATGATTCTATTGTT
388 CCAATTGTAAAATCTTTCTTTTGTTGCGTAAGAACACTGTTGAGGCTTGTTATGATTCTATTGTT
* **
33835401 TGCTTCATTCTTTCTTTTCCTCGTGGTGGCTTGGTTGTGTTGGTAAGTTGTGTGGAAGATTAGTT
453 CGCTTGTTTCTTTCTTTTCCTCGTGGTGGCTTGGTTGTGTTGGTAAGTTGTGTGGAAGATTAGTT
* * * * * * *
33835466 TTTTATAAAGTTGGGGTTTTGTTGTTTTAAGTAGAAAATTCCATATATTAATGATTTTATGATAG
518 CTTTATAAGGTTGGGGTTTTGTTGTTTTAA-CAAAAAAATCCGTAGATTAATGATTTTATGATAG
* * *
33835531 ATATAGTGTTTTGGCTAGTTGTTGTGGATATGAGAAGAGCGCGTGGTGATAGACAACCTTCCGAC
582 ATATAGTGTTGTGGCTGGTTGTTGTGGATAAGAGAAGAGCGCGTGGTGATAGACAACCTTCCGAC
* * *
33835596 AAATTAAGGTTTTGGAGTAGTTGCTGCAAGTTTGTGGTAACTAATAGTTGATGAATATAGGGACT
647 AAATTAAGGTTTTGGAGTAGTTGCTGCAAGTTTGTGGTAACTACTTGTTTATGAATATA-GGACT
* * * *
33835661 ATTTATTTGGGAAAAGTGCGAATGTAAGTGGTAATGTTCGTGTTAAATC-AGAGTTG
711 ATTTCTTTGAGAAAAGAGCGAATTTAAGTGGTAATGTTCGTGTTAAATCGA-AGTTG
* * *
33835717 TAATCATTAGTTTTGGTGTCGTTTGTAAGATTTTAAGTGTACGACTACGTGGTGGATTAATCTCG
1 TAATCATTGGTTTTGGTGTCGTTTGTAGGATTTTAAGTGTATGACTACGTGGTGGATTAATCTCG
* * *
33835782 CTATCAGGTGTGTGAAAACAATCCTAAAACTCTGTAGAAACTCATTAAATCGTGAAACATGGTCT
66 CTATCAGGTGTGTGAAAACAATCCTAAAACTCTATAGAAACTCATTAAATCGTGAAACAGGGGCT
* * * * * **
33835847 GTTTTTCAAAACCGCCTAGTGCCACACGGTCGTGTGTCAGGCCGTGTTGTAGATTGTGTGCACCA
131 ATTTTTCGAAACTGCCTAGTGCCACACGGCCGTGTGTCAGGCCGTGTGGTAGATTGTGTGCGTCA
* ** * * *
33835912 CACGACCGTCTAATTTTATTTTTAAAAATCAAATACCTGTTATTTTTCTCTTTCAGCAACCGTTA
196 CACGACCGTGTAATTTTATTTTTTTAAATCAAATCCCTGTTATTTTTCTCTTTCGGCAACCGTCA
*
33835977 AACCAACTTCTCTTTGGTTGCACATTTCTTTCCCTTCTTTCAATTTTGTTTTACATTTTTTTCTT
261 AACCAACTTCTCTTTGGTTGCACGTTTCTTTCCCTTC-TTCAATTTTGTTTTACATTTTTTTCTT
* *
33836042 TCTTTTCTTCTTTCTTTCCTTCTTTAAACCTTGCCAACACCGACTCCTTCTTTTGTTATTGTGCC
325 TCTTTTCTTCTTTCTTTCCTTCTTTACACCTTGCCAACGCCGACTCCTTCTTTTGTTATTGTGCC
* * * *
33836107 AATTGCAAAATCTTTCTTTTGTTGTGTGAGAACACTGTTGAGGCTTGTTATGATTCTATTGTTCA
390 AATTGTAAAATCTTTCTTTTGTTGCGTAAGAACACTGTTGAGGCTTGTTATGATTCTATTGTTCG
33836172 CTTGTTTCTTTCTTTTCCTCGTGGTGGCTTGGTTGTGTTGGTAAGTTGT-TGGAAGATTAGTTCT
455 CTTGTTTCTTTCTTTTCCTCGTGGTGGCTTGGTTGTGTTGGTAAGTTGTGTGGAAGATTAGTTCT
* *
33836236 TTATAAGGTTGGAGTTTTGTTGTTTTAAGCAAAAAAATACGTAGATTAATGATTTTATGATAGAT
520 TTATAAGGTTGGGGTTTTGTTGTTTTAA-CAAAAAAATCCGTAGATTAATGATTTTATGATAGAT
* *
33836301 ATAGTGTTGTGGCTGGTTTTTGTGGATAAGAGAAGAGCGCATGGTGATAGACAA-CTCTCCGACA
584 ATAGTGTTGTGGCTGGTTGTTGTGGATAAGAGAAGAGCGCGTGGTGATAGACAACCT-TCCGACA
*
33836365 ATTTAAGGTTTTGGAGTAGTTGCTGCAAGTTTGTGGTAACTACTTGTTTATGAATATAAGGACTA
648 AATTAAGGTTTTGGAGTAGTTGCTGCAAGTTTGTGGTAACTACTTGTTTATGAATAT-AGGACTA
* * *
33836430 TTTCTTTGAGAAAAGAGCGAATTTAAATGGTAATGTTCATGTTAAATCGAAGTTT
712 TTTCTTTGAGAAAAGAGCGAATTTAAGTGGTAATGTTCGTGTTAAATCGAAGTTG
* * * * ** * *
33836485 TAATCGTTGGCTTTGGTGTTGTTTGTAGGATTTTACGTGTAAAACTACGTGCTGGATTAATGTCG
1 TAATCATTGGTTTTGGTGTCGTTTGTAGGATTTTAAGTGTATGACTACGTGGTGGATTAATCTCG
* * *
33836550 CTATCAGGTGTGTGAAAACGATCCTAAAACTCGATAGAAACTTATTAAATCGTGAAACAGGGGCT
66 CTATCAGGTGTGTGAAAACAATCCTAAAACTCTATAGAAACTCATTAAATCGTGAAACAGGGGCT
* * * * * *
33836615 ATTTTTTGAAACTGCCCAGTGCCACACGGCTGTGTGTCAGGCCGTATGGTAGATTGTGTGTGTGA
131 ATTTTTCGAAACTGCCTAGTGCCACACGGCCGTGTGTCAGGCCGTGTGGTAGATTGTGTGCGTCA
* *
33836680 CACGTCCGTGTAATTTTATTTTTTTAAATCAAATCCCTGTTATTTTTCTCTTTCGGCAACCATCA
196 CACGACCGTGTAATTTTATTTTTTTAAATCAAATCCCTGTTATTTTTCTCTTTCGGCAACCGTCA
33836745 AACCAACTTCTCTTTGGTTGCACGTTTCTTTCCCTTCTTCCAATTTTGTTTTACATTTTTTTCTT
261 AACCAACTTCTCTTTGGTTGCACGTTTCTTTCCCTTCTT-CAATTTTGTTTTACATTTTTTTCTT
* *
33836810 TCTTTTCTTCTTTCTTTCCTTCTTATACGCCTTGCCAACGCTGACTCCTTCTTTTGTTATTGTGC
325 TCTTTTCTTCTTTCTTTCCTTCTT-TACACCTTGCCAACGCCGACTCCTTCTTTTGTTATTGTGC
* *
33836875 CAATTGTAAAATCTTTCTTTTGTTGCGTAAGAACACTGTTGAGGCTTCTTATTATTCTATTGTTC
389 CAATTGTAAAATCTTTCTTTTGTTGCGTAAGAACACTGTTGAGGCTTGTTATGATTCTATTGTTC
* * *
33836940 GCTTGTTTCTTTCTTTTCCTCGTGGTGGCTTTGTTGTGTTGGTAAGTTGTGTGAAAGATAAGTTC
454 GCTTGTTTCTTTCTTTTCCTCGTGGTGGCTTGGTTGTGTTGGTAAGTTGTGTGGAAGATTAGTTC
* **
33837005 TTAATAAGGTTGGGGTTTTGTTGTTTTAACAAAAAAAATCCGTAGATTAATGATTTTATGATTTA
519 TTTATAAGGTTGGGGTTTTGTTGTTTTAAC-AAAAAAATCCGTAGATTAATGATTTTATGATAGA
* * *
33837070 TATAGTGTTGTGGCTGGTTGTTGTGGATAGGAGAAGAGCGCGTGGTGGTGGACAACCTTCCGACA
583 TATAGTGTTGTGGCTGGTTGTTGTGGATAAGAGAAGAGCGCGTGGTGATAGACAACCTTCCGACA
*
33837135 AATTAAGGTTTTGGAGTAGTTGCTGCAAGTTTGTGGTAACTACTTGTTTATGAATATAGTGACTG
648 AATTAAGGTTTTGGAGTAGTTGCTGCAAGTTTGTGGTAACTACTTGTTTATGAATATAG-GACTA
**
33837200 TTTCTTTGAGAAAAGAGTAAATTTAAGTGGTAATGTTCGTGTTAAATCGAAGTTG
712 TTTCTTTGAGAAAAGAGCGAATTTAAGTGGTAATGTTCGTGTTAAATCGAAGTTG
* * * *
33837255 TAATTATTGGTTTTGGTGCCGTTTGTAGGATTTTAAGTGTATGACTACGAGGTGGATTAATGTCG
1 TAATCATTGGTTTTGGTGTCGTTTGTAGGATTTTAAGTGTATGACTACGTGGTGGATTAATCTCG
* * * *
33837320 CTATCAGGTGTGTGAAAACGATTCTAAAACCCTATAGAAACTCGTTAAATCGTGAAACAGGGGCT
66 CTATCAGGTGTGTGAAAACAATCCTAAAACTCTATAGAAACTCATTAAATCGTGAAACAGGGGCT
* * * *
33837385 ATTTTTCGAAACTACCTAGTGCCATACAGCCGTATGGT-AGGCCGTGTG
131 ATTTTTCGAAACTGCCTAGTGCCACACGGCCGTGT-GTCAGGCCGTGTG
33837433 CCAGATCGTG
Statistics
Matches: 1524, Mismatches: 177, Indels: 27
0.88 0.10 0.02
Matches are distributed among these distances:
766 20 0.01
767 297 0.19
768 542 0.36
769 272 0.18
770 389 0.26
771 4 0.00
ACGTcount: A:0.24, C:0.15, G:0.21, T:0.40
Consensus pattern (766 bp):
TAATCATTGGTTTTGGTGTCGTTTGTAGGATTTTAAGTGTATGACTACGTGGTGGATTAATCTCG
CTATCAGGTGTGTGAAAACAATCCTAAAACTCTATAGAAACTCATTAAATCGTGAAACAGGGGCT
ATTTTTCGAAACTGCCTAGTGCCACACGGCCGTGTGTCAGGCCGTGTGGTAGATTGTGTGCGTCA
CACGACCGTGTAATTTTATTTTTTTAAATCAAATCCCTGTTATTTTTCTCTTTCGGCAACCGTCA
AACCAACTTCTCTTTGGTTGCACGTTTCTTTCCCTTCTTCAATTTTGTTTTACATTTTTTTCTTT
CTTTTCTTCTTTCTTTCCTTCTTTACACCTTGCCAACGCCGACTCCTTCTTTTGTTATTGTGCCA
ATTGTAAAATCTTTCTTTTGTTGCGTAAGAACACTGTTGAGGCTTGTTATGATTCTATTGTTCGC
TTGTTTCTTTCTTTTCCTCGTGGTGGCTTGGTTGTGTTGGTAAGTTGTGTGGAAGATTAGTTCTT
TATAAGGTTGGGGTTTTGTTGTTTTAACAAAAAAATCCGTAGATTAATGATTTTATGATAGATAT
AGTGTTGTGGCTGGTTGTTGTGGATAAGAGAAGAGCGCGTGGTGATAGACAACCTTCCGACAAAT
TAAGGTTTTGGAGTAGTTGCTGCAAGTTTGTGGTAACTACTTGTTTATGAATATAGGACTATTTC
TTTGAGAAAAGAGCGAATTTAAGTGGTAATGTTCGTGTTAAATCGAAGTTG
Found at i:33845485 original size:43 final size:41
Alignment explanation
Indices: 33845413--33845567 Score: 152
Period size: 43 Copynumber: 3.7 Consensus size: 41
33845403 NNNATTTTCA
* *
33845413 TGTAAGACCACATCTGGGACGTTGGCATCGACTTGTGTATACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-TTGTG-ATACG
* * * **
33845456 TGTAAGACCATGTCTAGGACATTGACATCGTATT-TGATTTG
1 TGTAAGACCACGTCTGGGACATTGGCATCG-ATTGTGATACG
* *
33845497 TGTAAGACC-CTGTCTGGGACAGTGGCATCGATATGTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGAT-TGTGA-TACG
*
33845540 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
33845568 TGTACGAGCC
Statistics
Matches: 90, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
40 2 0.02
41 29 0.32
42 5 0.06
43 52 0.58
44 2 0.02
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.30
Consensus pattern (41 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATTGTGATACG
Found at i:33845511 original size:41 final size:42
Alignment explanation
Indices: 33845455--33845559 Score: 113
Period size: 41 Copynumber: 2.5 Consensus size: 42
33845445 TTGTGTATAC
* *
33845455 GTGTAAGACCATGTCTAGGACATTGACATCG-TATTTGATTT
1 GTGTAAGACCATGTCTAGGACAGTGACATCGATATGTGATTT
* * * *
33845496 GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATTAC
1 GTGTAAGACCATGTCTAGGACAGTGACATCGATATGTGATT-T
* * *
33845539 ATGTAAGACCACGTCTGGGAC
1 GTGTAAGACCATGTCTAGGAC
33845560 GTTGGCATTG
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
41 27 0.51
42 8 0.15
43 18 0.34
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATGTCTAGGACAGTGACATCGATATGTGATTT
Found at i:33845758 original size:16 final size:17
Alignment explanation
Indices: 33845729--33845760 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
33845719 TGAATTGATG
33845729 ATATGAAGTTATGTGAA
1 ATATGAAGTTATGTGAA
33845746 ATATGAA-TTATGTGA
1 ATATGAAGTTATGTGA
33845761 TTGCATATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.22, T:0.38
Consensus pattern (17 bp):
ATATGAAGTTATGTGAA
Found at i:33848625 original size:16 final size:17
Alignment explanation
Indices: 33848596--33848628 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
33848586 AGCATATTTA
33848596 ATAAAAATAATTTAATC
1 ATAAAAATAATTTAATC
*
33848613 ATAAAAA-ATTTTAATC
1 ATAAAAATAATTTAATC
33848629 TTCCAAATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (17 bp):
ATAAAAATAATTTAATC
Found at i:33852273 original size:21 final size:22
Alignment explanation
Indices: 33852249--33852296 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
33852239 AAACTAAGGG
33852249 GAAGTTC-ATCACTGAG-GAGAA
1 GAAGTTCTATCACT-AGTGAGAA
33852270 GAAG-TCTATCACTAGTGAGAA
1 GAAGTTCTATCACTAGTGAGAA
33852291 GAAGTT
1 GAAGTT
33852297 TATTTCCGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 4 0.17
21 19 0.79
22 1 0.04
ACGTcount: A:0.38, C:0.12, G:0.27, T:0.23
Consensus pattern (22 bp):
GAAGTTCTATCACTAGTGAGAA
Found at i:33854028 original size:26 final size:26
Alignment explanation
Indices: 33853999--33854055 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
33853989 TAAAAAGGGA
33853999 TTTAGTTAATTGAATGGAATTATTAT
1 TTTAGTTAATTGAATGGAATTATTAT
33854025 TTTAGTTAATTGAATGGAATTATTAT
1 TTTAGTTAATTGAATGGAATTATTAT
33854051 TTTAG
1 TTTAG
33854056 ATATGGATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (26 bp):
TTTAGTTAATTGAATGGAATTATTAT
Done.