Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 107 of 145
Found at i:35940302 original size:14 final size:14
Alignment explanation
Indices: 35940257--35940301 Score: 58
Period size: 15 Copynumber: 3.2 Consensus size: 14
35940247 AAGAAGAAGA
35940257 AAAAG-AATA-AAT
1 AAAAGAAATATAAT
35940269 AAAATGAAATATAAT
1 AAAA-GAAATATAAT
35940284 AAAAGAAATAATAAT
1 AAAAGAAAT-ATAAT
35940299 AAA
1 AAA
35940302 GTGAAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
12 4 0.14
13 1 0.03
14 9 0.31
15 15 0.52
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (14 bp):
AAAAGAAATATAAT
Found at i:35944591 original size:61 final size:59
Alignment explanation
Indices: 35944502--35944618 Score: 146
Period size: 58 Copynumber: 1.9 Consensus size: 59
35944492 AAGTGATTTT
** * * *
35944502 TTTAATATTTAATTTAATTTAATGTTTATCTTGTAGATAAATATTCTATTAATTTAATAAGA
1 TTTAATATTTAAACTAATATAATATTTATC-T-T-GATAAATATTATATTAATTTAATAAGA
*
35944564 TTTAATA-TTAAACTAATATAATATTTATCTTGATAAATATTATATTAGTTTAATA
1 TTTAATATTTAAACTAATATAATATTTATCTTGATAAATATTATATTAATTTAATA
35944619 TCAAAATGAT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
58 22 0.45
59 1 0.02
60 1 0.02
61 18 0.37
62 7 0.14
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.50
Consensus pattern (59 bp):
TTTAATATTTAAACTAATATAATATTTATCTTGATAAATATTATATTAATTTAATAAGA
Found at i:35948754 original size:9 final size:9
Alignment explanation
Indices: 35948742--35948806 Score: 71
Period size: 9 Copynumber: 7.2 Consensus size: 9
35948732 ATTCGGTCGG
35948742 TTAACCGAA
1 TTAACCGAA
**
35948751 TTAACTTAA
1 TTAACCGAA
*
35948760 TTAACCGGA
1 TTAACCGAA
35948769 TT-ACACGAA
1 TTAAC-CGAA
35948778 TT-ACCTGAA
1 TTAACC-GAA
35948787 TTAACCGAA
1 TTAACCGAA
35948796 TTAACCGAA
1 TTAACCGAA
35948805 TT
1 TT
35948807 GAATCGCACA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
8 3 0.06
9 41 0.87
10 3 0.06
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (9 bp):
TTAACCGAA
Found at i:35948777 original size:27 final size:27
Alignment explanation
Indices: 35948742--35948806 Score: 87
Period size: 27 Copynumber: 2.4 Consensus size: 27
35948732 ATTCGGTCGG
* *
35948742 TTAACCGAATTAACTTAATTAACCGGA
1 TTAACCGAATTAACTGAATTAACCGAA
*
35948769 TT-ACACGAATTACCTGAATTAACCGAA
1 TTAAC-CGAATTAACTGAATTAACCGAA
35948796 TTAACCGAATT
1 TTAACCGAATT
35948807 GAATCGCACA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
26 2 0.06
27 29 0.88
28 2 0.06
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (27 bp):
TTAACCGAATTAACTGAATTAACCGAA
Found at i:35948842 original size:26 final size:26
Alignment explanation
Indices: 35948813--35948866 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
35948803 AATTGAATCG
*
35948813 CACAAAGAGCC-TTTAATCGGGAAGCT
1 CACAAAGAGCCATAT-ATCGGGAAGCT
*
35948839 CACAAAGAGCCATATATCGGGACGCT
1 CACAAAGAGCCATATATCGGGAAGCT
35948865 CA
1 CA
35948867 TAAGAGTTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.35, C:0.26, G:0.22, T:0.17
Consensus pattern (26 bp):
CACAAAGAGCCATATATCGGGAAGCT
Found at i:35948939 original size:24 final size:25
Alignment explanation
Indices: 35948924--35948970 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
35948914 GGATGCTCCG
35948924 AAGAACTAT-TAACGGGAAGCTCGC
1 AAGAACTATATAACGGGAAGCTCGC
**
35948948 AAGAACTATATAACATGAAGCTC
1 AAGAACTATATAACGGGAAGCTC
35948971 AAGAGGGCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.43, C:0.19, G:0.19, T:0.19
Consensus pattern (25 bp):
AAGAACTATATAACGGGAAGCTCGC
Found at i:35949279 original size:24 final size:25
Alignment explanation
Indices: 35949227--35949273 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
35949217 TGGCCCTCTT
**
35949227 GAGCTTCATGTTATATAGTTCTTGC
1 GAGCTTCCCGTTATATAGTTCTTGC
35949252 GAGCTTCCCGTTA-ATAGTTCTT
1 GAGCTTCCCGTTATATAGTTCTT
35949274 CGGAGCATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 9 0.45
25 11 0.55
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (25 bp):
GAGCTTCCCGTTATATAGTTCTTGC
Found at i:35949284 original size:24 final size:25
Alignment explanation
Indices: 35949236--35949285 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 25
35949226 TGAGCTTCAT
*
35949236 GTTATATAGTTCTTGCGAGCTTCCC
1 GTTATATAGTTCTTGCGAGCATCCC
35949261 GTTA-ATAGTTCTT-CGGAGCATCCC
1 GTTATATAGTTCTTGC-GAGCATCCC
35949285 G
1 G
35949286 ATTGGTTGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
23 1 0.04
24 18 0.78
25 4 0.17
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (25 bp):
GTTATATAGTTCTTGCGAGCATCCC
Found at i:35949388 original size:26 final size:26
Alignment explanation
Indices: 35949331--35949391 Score: 88
Period size: 26 Copynumber: 2.3 Consensus size: 26
35949321 ACAACTCTTA
* *
35949331 TGAGCGTCCCGATATATGGCTCTTTG
1 TGAGCTTCCCGATATAAGGCTCTTTG
35949357 TGAGCTTCCCGAT-TAAAGGCTCTTTG
1 TGAGCTTCCCGATAT-AAGGCTCTTTG
35949383 TGAGCTTCC
1 TGAGCTTCC
35949392 TAATTAATGG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
25 1 0.03
26 31 0.97
ACGTcount: A:0.16, C:0.25, G:0.25, T:0.34
Consensus pattern (26 bp):
TGAGCTTCCCGATATAAGGCTCTTTG
Found at i:35949397 original size:26 final size:26
Alignment explanation
Indices: 35949348--35949403 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
35949338 CCCGATATAT
*
35949348 GGCTCTTTGTGAGCTTCCCGATTAAA
1 GGCTCTTTGTGAGCTTCCCAATTAAA
* *
35949374 GGCTCTTTGTGAGCTTCCTAATTAAT
1 GGCTCTTTGTGAGCTTCCCAATTAAA
35949400 GGCT
1 GGCT
35949404 TTTCGAAGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (26 bp):
GGCTCTTTGTGAGCTTCCCAATTAAA
Found at i:35949466 original size:74 final size:73
Alignment explanation
Indices: 35949383--35949540 Score: 194
Period size: 74 Copynumber: 2.2 Consensus size: 73
35949373 AGGCTCTTTG
* * * *
35949383 TGAGCTTCCTAATTAATGGCTTTTCGAAGCTTCTCGA-TATTGGCTCGCTTGAACTTCCTGATAT
1 TGAGCTTCCTAATTAATGGCTCTTCGAAGCTAC-CCATTATTGGCTCGCATGAACTTCCTGAT-T
35949447 ATGACTATCTA
64 ATGACTAT-TA
* * *
35949458 -GAGCTTCCTGATTAATGGCTCTTCGAAGCTACCCATTATTGGCTCGCATGAGCTTCTTGATTAT
1 TGAGCTTCCTAATTAATGGCTCTTCGAAGCTACCCATTATTGGCTCGCATGAACTTCCTGATTAT
* *
35949522 GGCTCTTA
66 GACTATTA
35949530 TGAGCTTCCTA
1 TGAGCTTCCTA
35949541 TTATACAGCT
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
72 2 0.03
73 18 0.25
74 51 0.72
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (73 bp):
TGAGCTTCCTAATTAATGGCTCTTCGAAGCTACCCATTATTGGCTCGCATGAACTTCCTGATTAT
GACTATTA
Found at i:35949487 original size:25 final size:25
Alignment explanation
Indices: 35949359--35949487 Score: 72
Period size: 25 Copynumber: 5.2 Consensus size: 25
35949349 GCTCTTTGTG
* * * *
35949359 AGCTTCCCGATTAAAGGCTCTTTGTG
1 AGCTTCCTGATTAATGGCTCTTCG-A
* *
35949385 AGCTTCCTAATTAATGGCTTTTCGA
1 AGCTTCCTGATTAATGGCTCTTCGA
*
35949410 AGCTT-CTCGA-TATTGGCTCGCTT-GA
1 AGCTTCCT-GATTAATGGCT--CTTCGA
* * *
35949435 A-CTTCCTGA-TATATGACT-ATCTA
1 AGCTTCCTGATTA-ATGGCTCTTCGA
35949458 GAGCTTCCTGATTAATGGCTCTTCGA
1 -AGCTTCCTGATTAATGGCTCTTCGA
35949484 AGCT
1 AGCT
35949488 ACCCATTATT
Statistics
Matches: 77, Mismatches: 16, Indels: 21
0.68 0.14 0.18
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 17 0.22
25 32 0.42
26 26 0.34
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.36
Consensus pattern (25 bp):
AGCTTCCTGATTAATGGCTCTTCGA
Found at i:35952158 original size:23 final size:20
Alignment explanation
Indices: 35952132--35952174 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
35952122 TTCGATTCGA
35952132 ATATTAACTGAATCATATTTTTT
1 ATATTAAC--AAT-ATATTTTTT
*
35952155 ATATTGACAATATATTTTTT
1 ATATTAACAATATATTTTTT
35952175 GAACTTTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 9 0.47
21 3 0.16
23 7 0.37
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (20 bp):
ATATTAACAATATATTTTTT
Found at i:35984325 original size:56 final size:56
Alignment explanation
Indices: 35984258--35984369 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
35984248 ATTATGGGTG
35984258 AAGTGGGGGTAAGACATTTTCATTTTCATTTTCATTTGTTATTATTTGAATTTTTT
1 AAGTGGGGGTAAGACATTTTCATTTTCATTTTCATTTGTTATTATTTGAATTTTTT
*
35984314 AAGTGGGGGTAAGACATTTTCATTTTCATTTTCATTTGTTATTATTTGATTTTTTT
1 AAGTGGGGGTAAGACATTTTCATTTTCATTTTCATTTGTTATTATTTGAATTTTTT
35984370 TATAAAAGTA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.22, C:0.07, G:0.16, T:0.54
Consensus pattern (56 bp):
AAGTGGGGGTAAGACATTTTCATTTTCATTTTCATTTGTTATTATTTGAATTTTTT
Found at i:35985927 original size:16 final size:16
Alignment explanation
Indices: 35985906--35985959 Score: 90
Period size: 16 Copynumber: 3.4 Consensus size: 16
35985896 TTGATTTGCT
35985906 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
35985922 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
35985938 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
*
35985954 AATACA
1 ATTACA
35985960 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.28, C:0.35, G:0.02, T:0.35
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:35986089 original size:121 final size:122
Alignment explanation
Indices: 35985938--35986182 Score: 483
Period size: 121 Copynumber: 2.0 Consensus size: 122
35985928 CCTCTATTCC
35985938 ATTACGCCTCTATTCCAATACAGCGAACCAAACGTGCTCTTATGATTTCCCTATTTTAATAATCT
1 ATTACGCCTCTATTCCAATACAGCGAACCAAACGTGCTCTTATGATTTCCCTATTTTAATAATCT
35986003 GAAAAACATTTGTTGACACCATTTTTTTGTGAAACGGGGTCGAC-TGGATTTTGAAA
66 GAAAAACATTTGTTGACACCATTTTTTTGTGAAACGGGGTCGACTTGGATTTTGAAA
35986059 ATTACGCCTCTATTCCAATACAGCGAACCAAACGTGCTCTTATGATTTCCCTATTTTAATAATCT
1 ATTACGCCTCTATTCCAATACAGCGAACCAAACGTGCTCTTATGATTTCCCTATTTTAATAATCT
35986124 GAAAAACATTTGTTGACACCATTTTTTTGTGAAACGGGGTCGACTTGGATTTTGAAA
66 GAAAAACATTTGTTGACACCATTTTTTTGTGAAACGGGGTCGACTTGGATTTTGAAA
35986181 AT
1 AT
35986183 GAAAACGAAC
Statistics
Matches: 123, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
121 109 0.89
122 14 0.11
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.35
Consensus pattern (122 bp):
ATTACGCCTCTATTCCAATACAGCGAACCAAACGTGCTCTTATGATTTCCCTATTTTAATAATCT
GAAAAACATTTGTTGACACCATTTTTTTGTGAAACGGGGTCGACTTGGATTTTGAAA
Found at i:36014743 original size:3 final size:3
Alignment explanation
Indices: 36014735--36014775 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
36014725 TAAGAATATA
36014735 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
36014776 ACAGCTTGAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:36018782 original size:2 final size:2
Alignment explanation
Indices: 36018765--36018796 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
36018755 TGTGGGCTTT
36018765 TC TC T- TC TC T- TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
36018797 ACACGCTTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 26 0.93
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:36024098 original size:68 final size:68
Alignment explanation
Indices: 36024010--36024226 Score: 254
Period size: 68 Copynumber: 3.0 Consensus size: 68
36024000 AATTTGTTCA
* * * *
36024010 TCCTATAAGCATTGCATTCATAAAGAGCATCAATTTGGATGAATATGCGTAAAAATTTAATAGAA
1 TCCTGTAAGCATTGCATTCATAAAGAGCATCAAATTGGTTGAATTTGCGTAAAAATTTAATAGAA
36024075 AAG
66 AAG
* * * *
36024078 TCCTGTAAGAATTGCATTCATAAAGAGCATCAAATTGGTTGAATTTGTGTGAAAATTTACTAGAA
1 TCCTGTAAGCATTGCATTCATAAAGAGCATCAAATTGGTTGAATTTGCGTAAAAATTTAATAGAA
36024143 AAG
66 AAG
*
36024146 TCCAAGGTGATCCTCTAAGCATTGCATTCATAAAGAGCATCAAATTGGTTGAATTTGCGTAAAGA
1 TCC----TG------TAAGCATTGCATTCATAAAGAGCATCAAATTGGTTGAATTTGCGTAAAAA
*
36024211 TTTAGTAGAAAAG
56 TTTAATAGAAAAG
36024224 TCC
1 TCC
36024227 AAGGTGAAAG
Statistics
Matches: 126, Mismatches: 13, Indels: 10
0.85 0.09 0.07
Matches are distributed among these distances:
68 63 0.50
72 2 0.02
78 61 0.48
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.30
Consensus pattern (68 bp):
TCCTGTAAGCATTGCATTCATAAAGAGCATCAAATTGGTTGAATTTGCGTAAAAATTTAATAGAA
AAG
Found at i:36024182 original size:78 final size:78
Alignment explanation
Indices: 36024078--36024233 Score: 260
Period size: 78 Copynumber: 2.0 Consensus size: 78
36024068 AATAGAAAAG
* *
36024078 TCCTGTAAGAATTGCATTCATAAAGAGCATCAAATTGGTTGAATTTGTGTGAAA-ATTTACTAGA
1 TCCTCTAAGAATTGCATTCATAAAGAGCATCAAATTGGTTGAATTTGCGT-AAAGATTTACTAGA
36024142 AAAGTCCAAGGTGA
65 AAAGTCCAAGGTGA
* *
36024156 TCCTCTAAGCATTGCATTCATAAAGAGCATCAAATTGGTTGAATTTGCGTAAAGATTTAGTAGAA
1 TCCTCTAAGAATTGCATTCATAAAGAGCATCAAATTGGTTGAATTTGCGTAAAGATTTACTAGAA
36024221 AAGTCCAAGGTGA
66 AAGTCCAAGGTGA
36024234 AAGTCAGAAG
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
77 3 0.04
78 70 0.96
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.30
Consensus pattern (78 bp):
TCCTCTAAGAATTGCATTCATAAAGAGCATCAAATTGGTTGAATTTGCGTAAAGATTTACTAGAA
AAGTCCAAGGTGA
Found at i:36027419 original size:35 final size:36
Alignment explanation
Indices: 36027355--36027424 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 36
36027345 TGTGAAAGAG
* * *
36027355 AATATGTGGGTATGTTATTCATGCCATGTGACAGTA
1 AATATGTAGGTATGTTATTCATACAATGTGACAGTA
36027391 AATATGTAGGTATGTT-TTCATACAATGTGACAGT
1 AATATGTAGGTATGTTATTCATACAATGTGACAGT
36027425 GATTATAATG
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
35 16 0.52
36 15 0.48
ACGTcount: A:0.30, C:0.10, G:0.23, T:0.37
Consensus pattern (36 bp):
AATATGTAGGTATGTTATTCATACAATGTGACAGTA
Found at i:36034632 original size:36 final size:36
Alignment explanation
Indices: 36034592--36034662 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
36034582 TGTAATTGTC
* *
36034592 AATTCAATTGAATAAAAGTTTATGGATGTATATGTT
1 AATTCAAGTGAATAAAAGTTTATGGAAGTATATGTT
**
36034628 AATTCAAGTGAATGGAAGTTTATGGAAGTATATGT
1 AATTCAAGTGAATAAAAGTTTATGGAAGTATATGT
36034663 ATTTATATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.38, C:0.03, G:0.21, T:0.38
Consensus pattern (36 bp):
AATTCAAGTGAATAAAAGTTTATGGAAGTATATGTT
Found at i:36035873 original size:19 final size:19
Alignment explanation
Indices: 36035836--36035873 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
36035826 CTAATTAAGT
*
36035836 TTTAATTAGATGAATTTAG
1 TTTAATTAGATGAAATTAG
36035855 TTTAATTAAGA-GAAATTAG
1 TTTAATT-AGATGAAATTAG
36035874 GAAAAAGGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.42, C:0.00, G:0.16, T:0.42
Consensus pattern (19 bp):
TTTAATTAGATGAAATTAG
Found at i:36036381 original size:14 final size:14
Alignment explanation
Indices: 36036362--36036391 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
36036352 TAATTAAAAC
36036362 AATAAAGTAAATAA
1 AATAAAGTAAATAA
36036376 AATAAAGTAAATAA
1 AATAAAGTAAATAA
36036390 AA
1 AA
36036392 ACGAAACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (14 bp):
AATAAAGTAAATAA
Found at i:36037158 original size:19 final size:19
Alignment explanation
Indices: 36037122--36037161 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
36037112 AAGTGACTTT
**
36037122 ATTAAATTGAATTTGAAAA
1 ATTAAATTGAATGAGAAAA
36037141 ATTAAATTGAATGAGAAAA
1 ATTAAATTGAATGAGAAAA
36037160 AT
1 AT
36037162 ATGTGTTGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (19 bp):
ATTAAATTGAATGAGAAAA
Found at i:36037388 original size:23 final size:23
Alignment explanation
Indices: 36037354--36037461 Score: 91
Period size: 23 Copynumber: 4.9 Consensus size: 23
36037344 TTTGCCGATT
*
36037354 AGGCACTATATGTGTCGTATATC
1 AGGCACTTTATGTGTCGTATATC
*
36037377 AGGCACTTTATGTGTCGTATGTC
1 AGGCACTTTATGTGTCGTATATC
* * ** *
36037400 AAGCACCTCGTGTGT--TGTATC
1 AGGCACTTTATGTGTCGTATATC
**
36037421 AGGCACTTCGTGTGTCGT-T-TC
1 AGGCACTTTATGTGTCGTATATC
*
36037442 AGGCAC-TTATGTGTCATATA
1 AGGCACTTTATGTGTCGTATA
36037462 CTGATCAGGT
Statistics
Matches: 68, Mismatches: 13, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
20 8 0.12
21 26 0.38
22 1 0.01
23 33 0.49
ACGTcount: A:0.20, C:0.19, G:0.24, T:0.36
Consensus pattern (23 bp):
AGGCACTTTATGTGTCGTATATC
Found at i:36037448 original size:21 final size:23
Alignment explanation
Indices: 36037364--36037449 Score: 90
Period size: 21 Copynumber: 3.9 Consensus size: 23
36037354 AGGCACTATA
**
36037364 TGTGTCGTATATCAGGCACTTTA
1 TGTGTCGTATATCAGGCACTTCG
* * *
36037387 TGTGTCGTATGTCAAGCACCTCG
1 TGTGTCGTATATCAGGCACTTCG
*
36037410 TGTGT--TGTATCAGGCACTTCG
1 TGTGTCGTATATCAGGCACTTCG
36037431 TGTGTCGT-T-TCAGGCACTT
1 TGTGTCGTATATCAGGCACTT
36037450 ATGTGTCATA
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
21 27 0.52
22 1 0.02
23 24 0.46
ACGTcount: A:0.16, C:0.21, G:0.26, T:0.37
Consensus pattern (23 bp):
TGTGTCGTATATCAGGCACTTCG
Found at i:36038413 original size:13 final size:13
Alignment explanation
Indices: 36038391--36038422 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
36038381 ATTTAACCTC
*
36038391 AAGGGTCCATTAA
1 AAGGGACCATTAA
36038404 AAGGGACCATTAA
1 AAGGGACCATTAA
36038417 AAGGGA
1 AAGGGA
36038423 TTTTATGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.28, T:0.16
Consensus pattern (13 bp):
AAGGGACCATTAA
Found at i:36040629 original size:37 final size:37
Alignment explanation
Indices: 36040581--36040654 Score: 121
Period size: 37 Copynumber: 2.0 Consensus size: 37
36040571 CGTTAAATAC
* *
36040581 AAAAAAACTTAGAGGATCAGTAGGCCATTGATCATAA
1 AAAAAAACTTAGAGGATAAATAGGCCATTGATCATAA
*
36040618 AAAAAAACTTAGAGGATAAATGGGCCATTGATCATAA
1 AAAAAAACTTAGAGGATAAATAGGCCATTGATCATAA
36040655 TTAGCATGTG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.47, C:0.12, G:0.19, T:0.22
Consensus pattern (37 bp):
AAAAAAACTTAGAGGATAAATAGGCCATTGATCATAA
Found at i:36050030 original size:15 final size:15
Alignment explanation
Indices: 36050006--36050037 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
36049996 TATACATGCA
*
36050006 AAATATAAAAGACAT
1 AAATACAAAAGACAT
36050021 AAATACAAAAGACAT
1 AAATACAAAAGACAT
36050036 AA
1 AA
36050038 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:36052457 original size:18 final size:18
Alignment explanation
Indices: 36052436--36052482 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
36052426 AAGGAATAAA
* *
36052436 TGAGGAAGAAGATGCAGT
1 TGAGGAAGAAGATACAGG
*
36052454 TGAGGAAAAAGATACAGG
1 TGAGGAAGAAGATACAGG
*
36052472 TGAAGAAGAAG
1 TGAGGAAGAAG
36052483 GGGCAGCGAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.47, C:0.04, G:0.36, T:0.13
Consensus pattern (18 bp):
TGAGGAAGAAGATACAGG
Found at i:36063524 original size:197 final size:197
Alignment explanation
Indices: 36063189--36063573 Score: 761
Period size: 197 Copynumber: 2.0 Consensus size: 197
36063179 TAAACTGCTC
36063189 TGATTTCTTTAATGAGACCAATTTACTTAATATCAAAATTGAGATAAAATCCGATAAATATTTAT
1 TGATTTCTTTAATGAGACCAATTTACTTAATATCAAAATTGAGATAAAATCCGATAAATATTTAT
36063254 GTTGTTGTTTTTATAAAGTCGAATTGATAAAATTTGATAAACATTGAATCTTTATATTCATTTTT
66 GTTGTTGTTTTTATAAAGTCGAATTGATAAAATTTGATAAACATTGAATCTTTATATTCATTTTT
*
36063319 GAATTATAATTTAAAATGTTAAATAAGAAATAACTTATTTTAAAATATTTTAATTATTATTACAT
131 GAATTATAATTTAAAATGTTAAATAAGAAATAACTTATTATAAAATATTTTAATTATTATTACAT
36063384 GA
196 GA
36063386 TGATTTCTTTAATGAGACCAATTTACTTAATATCAAAATTGAGATAAAATCCGATAAATATTTAT
1 TGATTTCTTTAATGAGACCAATTTACTTAATATCAAAATTGAGATAAAATCCGATAAATATTTAT
36063451 GTTGTTGTTTTTATAAAGTCGAATTGATAAAATTTGATAAACATTGAATCTTTATATTCATTTTT
66 GTTGTTGTTTTTATAAAGTCGAATTGATAAAATTTGATAAACATTGAATCTTTATATTCATTTTT
36063516 GAATTATAATTTAAAATGTTAAATAAGAAATAACTTATTATAAAATATTTTAATTATT
131 GAATTATAATTTAAAATGTTAAATAAGAAATAACTTATTATAAAATATTTTAATTATT
36063574 TTATATTACA
Statistics
Matches: 187, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
197 187 1.00
ACGTcount: A:0.41, C:0.06, G:0.09, T:0.44
Consensus pattern (197 bp):
TGATTTCTTTAATGAGACCAATTTACTTAATATCAAAATTGAGATAAAATCCGATAAATATTTAT
GTTGTTGTTTTTATAAAGTCGAATTGATAAAATTTGATAAACATTGAATCTTTATATTCATTTTT
GAATTATAATTTAAAATGTTAAATAAGAAATAACTTATTATAAAATATTTTAATTATTATTACAT
GA
Found at i:36069801 original size:102 final size:103
Alignment explanation
Indices: 36069687--36069893 Score: 407
Period size: 102 Copynumber: 2.0 Consensus size: 103
36069677 TAAAAATAAT
36069687 TACTCAAATTGTTGAACATAATTAAAATGTATTAACTTATTAAACAATTTAAATATTCTTTATTA
1 TACTCAAATTGTTGAACATAATTAAAATGTATTAACTTATTAAACAATTTAAATATTCTTTATTA
36069752 TATTCAATGTATAATGTAGTTTTATTTCA-ATAATTAA
66 TATTCAATGTATAATGTAGTTTTATTTCATATAATTAA
36069789 TACTCAAATTGTTGAACATAATTAAAATGTATTAACTTATTAAACAATTTAAATATTCTTTATTA
1 TACTCAAATTGTTGAACATAATTAAAATGTATTAACTTATTAAACAATTTAAATATTCTTTATTA
36069854 TATTCAATGTATAATGTAGTTTTATTTCATATAATTAA
66 TATTCAATGTATAATGTAGTTTTATTTCATATAATTAA
36069892 TA
1 TA
36069894 AATATAATTA
Statistics
Matches: 104, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
102 94 0.90
103 10 0.10
ACGTcount: A:0.41, C:0.08, G:0.06, T:0.45
Consensus pattern (103 bp):
TACTCAAATTGTTGAACATAATTAAAATGTATTAACTTATTAAACAATTTAAATATTCTTTATTA
TATTCAATGTATAATGTAGTTTTATTTCATATAATTAA
Found at i:36072319 original size:20 final size:22
Alignment explanation
Indices: 36072296--36072341 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 22
36072286 ATTTATAATG
36072296 TAATTTAATAA-TAAT-TAAAA
1 TAATTTAATAACTAATATAAAA
* *
36072316 TAATTTTATAACTAATATAAGA
1 TAATTTAATAACTAATATAAAA
36072338 TAAT
1 TAAT
36072342 ATCTACTCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 10 0.45
21 4 0.18
22 8 0.36
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (22 bp):
TAATTTAATAACTAATATAAAA
Found at i:36076318 original size:16 final size:15
Alignment explanation
Indices: 36076285--36076327 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
36076275 CAAACCATTA
36076285 AATTAATCATAAATAT
1 AATT-ATCATAAATAT
*
36076301 AATTATCATAAGTCAT
1 AATTATCATAAAT-AT
*
36076317 AATTCTCATAA
1 AATTATCATAA
36076328 TGTATACACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 8 0.33
16 16 0.67
ACGTcount: A:0.49, C:0.12, G:0.02, T:0.37
Consensus pattern (15 bp):
AATTATCATAAATAT
Found at i:36076492 original size:42 final size:41
Alignment explanation
Indices: 36076435--36076551 Score: 171
Period size: 42 Copynumber: 2.8 Consensus size: 41
36076425 CAACGTTTAC
*
36076435 AAAAAAAATGCCGCTAAAGGTCATGTTCTTTAGCGACGTTT
1 AAAAAAAATGCCGCTAAAGATCATGTTCTTTAGCGACGTTT
* * * *
36076476 AGAAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTT
1 A-AAAAAAATGCCGCTAAAGATCATGTTCTTTAGCGACGTTT
*
36076518 AAAAAAAATGCCACTAAAGATCATGTTCTTTAGC
1 AAAAAAAATGCCGCTAAAGATCATGTTCTTTAGC
36076552 AGCGCTTTTG
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
41 31 0.46
42 36 0.54
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.26
Consensus pattern (41 bp):
AAAAAAAATGCCGCTAAAGATCATGTTCTTTAGCGACGTTT
Found at i:36076523 original size:41 final size:41
Alignment explanation
Indices: 36076435--36076558 Score: 176
Period size: 41 Copynumber: 3.0 Consensus size: 41
36076425 CAACGTTTAC
* * *
36076435 AAAAAAAATGCCGCTAAAGGTCATGTTCTTTAGCGACGTTT
1 AAAAAAAATGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
* *
36076476 AGAAAAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTT
1 A-AAAAAAATGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
* *
36076518 AAAAAAAATGCCACTAAAGATCATGTTCTTTAGCAGCGCTT
1 AAAAAAAATGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
36076559 TTGTGAAAAA
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
41 37 0.51
42 36 0.49
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (41 bp):
AAAAAAAATGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT
Found at i:36076966 original size:21 final size:21
Alignment explanation
Indices: 36076942--36076993 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
36076932 ATTTCTTTTG
*
36076942 AGCCTCTGCTTCTCTCGCTAC
1 AGCCTCTGCTTCCCTCGCTAC
*
36076963 AGCCTCTGCTTCCCTCGCTGC
1 AGCCTCTGCTTCCCTCGCTAC
*
36076984 CGCCTCTGCT
1 AGCCTCTGCT
36076994 CTAAGTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.06, C:0.46, G:0.17, T:0.31
Consensus pattern (21 bp):
AGCCTCTGCTTCCCTCGCTAC
Found at i:36078984 original size:9 final size:9
Alignment explanation
Indices: 36078970--36079530 Score: 348
Period size: 9 Copynumber: 62.7 Consensus size: 9
36078960 TGTACGTGTA
36078970 TAAGTTATG
1 TAAGTTATG
36078979 TAAGTTATG
1 TAAGTTATG
*
36078988 T-A-TTAAG
1 TAAGTTATG
*
36078995 TAAGCTATG
1 TAAGTTATG
*
36079004 TAAGTTGTG
1 TAAGTTATG
36079013 T-A-TTATG
1 TAAGTTATG
36079020 TAAGTTATG
1 TAAGTTATG
36079029 TAAGTTATCG
1 TAAGTTAT-G
*
36079039 -AAGTAATG
1 TAAGTTATG
*
36079047 TATGTTATG
1 TAAGTTATG
36079056 TAAG-T-TG
1 TAAGTTATG
36079063 TAAGTTAT-
1 TAAGTTATG
*
36079071 TATGTATTATG
1 TAAG--TTATG
36079082 TAAGTTATG
1 TAAGTTATG
*
36079091 TAAGTTATCTT
1 TAAGTTA--TG
* *
36079102 TAATTTATA
1 TAAGTTATG
36079111 TAAGTTATG
1 TAAGTTATG
*
36079120 TAAGATATG
1 TAAGTTATG
36079129 TAAGTTATG
1 TAAGTTATG
*
36079138 TAAGTTATT
1 TAAGTTATG
36079147 TAAGTTATG
1 TAAGTTATG
36079156 TAAGTTATG
1 TAAGTTATG
36079165 TAAGTTATG
1 TAAGTTATG
*
36079174 TAAGTTATT
1 TAAGTTATG
36079183 TAA-TTAATG
1 TAAGTT-ATG
36079192 TAAGTTATG
1 TAAGTTATG
*
36079201 TAAGTTATA
1 TAAGTTATG
* *
36079210 TAATTTTTG
1 TAAGTTATG
**
36079219 TAAGCAAT-
1 TAAGTTATG
* * **
36079227 TTAG-AAAA
1 TAAGTTATG
* *
36079235 AAATTTATG
1 TAAGTTATG
36079244 TAAGTTATG
1 TAAGTTATG
36079253 TACTAAGTTATG
1 ---TAAGTTATG
36079265 T-A-TTATG
1 TAAGTTATG
**
36079272 TAAACTATG
1 TAAGTTATG
36079281 TACTAAGTTATG
1 ---TAAGTTATG
36079293 T-A-TTATG
1 TAAGTTATG
* *
36079300 TAA-ATATTT
1 TAAGTTA-TG
*
36079309 TAAGTAATG
1 TAAGTTATG
*
36079318 TATGTTATG
1 TAAGTTATG
*
36079327 TAAG-TAAG
1 TAAGTTATG
*
36079335 T-TGTTATG
1 TAAGTTATG
*
36079343 TAAGTTTTG
1 TAAGTTATG
*
36079352 -CA-TTATG
1 TAAGTTATG
36079359 TAAGTTATG
1 TAAGTTATG
*
36079368 TAAGTTATC
1 TAAGTTATG
* *
36079377 AAAGTAATG
1 TAAGTTATG
*
36079386 TATGTTATG
1 TAAGTTATG
36079395 TAAGTTGTTATG
1 TAA---GTTATG
36079407 TAAGTTGTTATG
1 TAA---GTTATG
*
36079419 TAAGTTTTG
1 TAAGTTATG
*
36079428 -CA-TTATG
1 TAAGTTATG
36079435 TAAGTTATG
1 TAAGTTATG
*
36079444 TCAGTTATG
1 TAAGTTATG
36079453 TAAGTTATG
1 TAAGTTATG
36079462 TAAGTTAAATG
1 TAAGTT--ATG
36079473 T-A-TTATG
1 TAAGTTATG
36079480 -AAGGTTATG
1 TAA-GTTATG
*
36079489 TAAGTTGTG
1 TAAGTTATG
36079498 TAAGTTATG
1 TAAGTTATG
36079507 TAAGTTAAATG
1 TAAGTT--ATG
36079518 T-A-TTATG
1 TAAGTTATG
36079525 TAAGTT
1 TAAGTT
36079531 TATATAAAAA
Statistics
Matches: 429, Mismatches: 76, Indels: 94
0.72 0.13 0.16
Matches are distributed among these distances:
7 47 0.11
8 35 0.08
9 280 0.65
10 12 0.03
11 18 0.04
12 37 0.09
ACGTcount: A:0.34, C:0.02, G:0.19, T:0.45
Consensus pattern (9 bp):
TAAGTTATG
Found at i:36079075 original size:19 final size:19
Alignment explanation
Indices: 36079051--36079089 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
36079041 GTAATGTATG
36079051 TTATGTAAGT-TGTAAGTTA
1 TTATGT-AGTATGTAAGTTA
*
36079070 TTATGTATTATGTAAGTTA
1 TTATGTAGTATGTAAGTTA
36079089 T
1 T
36079090 GTAAGTTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 2 0.11
19 16 0.89
ACGTcount: A:0.31, C:0.00, G:0.18, T:0.51
Consensus pattern (19 bp):
TTATGTAGTATGTAAGTTA
Found at i:36079347 original size:12 final size:12
Alignment explanation
Indices: 36079330--36079424 Score: 79
Period size: 12 Copynumber: 7.6 Consensus size: 12
36079320 TGTTATGTAA
36079330 GTAAGTTGTTAT
1 GTAAGTTGTTAT
36079342 GTAAGTTTTGCATTAT
1 GTAAG--TTG--TTAT
36079358 GTAA---GTTAT
1 GTAAGTTGTTAT
* * *
36079367 GTAAGTTATCAAA
1 GTAAGTTGT-TAT
36079380 GTAATGTATGTTAT
1 GTAA-GT-TGTTAT
36079394 GTAAGTTGTTAT
1 GTAAGTTGTTAT
36079406 GTAAGTTGTTAT
1 GTAAGTTGTTAT
36079418 GTAAGTT
1 GTAAGTT
36079425 TTGCATTATG
Statistics
Matches: 67, Mismatches: 6, Indels: 20
0.72 0.06 0.22
Matches are distributed among these distances:
9 8 0.12
11 1 0.01
12 31 0.46
13 7 0.10
14 10 0.15
15 2 0.03
16 8 0.12
ACGTcount: A:0.29, C:0.02, G:0.22, T:0.46
Consensus pattern (12 bp):
GTAAGTTGTTAT
Found at i:36079564 original size:38 final size:39
Alignment explanation
Indices: 36079515--36079607 Score: 152
Period size: 38 Copynumber: 2.4 Consensus size: 39
36079505 TGTAAGTTAA
*
36079515 ATGTATTATGTAAGTTTATATAAAAAAA-TATATAAGTT
1 ATGTATTATGTAAGTTTATATAAAAAAATTATAAAAGTT
* *
36079553 ATGTATCATGTAAGTTTATATAAAAAAATTTTAAAAGTT
1 ATGTATTATGTAAGTTTATATAAAAAAATTATAAAAGTT
36079592 ATGTATTATGTAAGTT
1 ATGTATTATGTAAGTT
36079608 AAAAGTAATG
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
38 27 0.54
39 23 0.46
ACGTcount: A:0.44, C:0.01, G:0.12, T:0.43
Consensus pattern (39 bp):
ATGTATTATGTAAGTTTATATAAAAAAATTATAAAAGTT
Found at i:36079609 original size:23 final size:23
Alignment explanation
Indices: 36079583--36079630 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
36079573 TAAAAAAATT
*
36079583 TTAAAAGTTATGTATTATGTAAG
1 TTAAAAGTAATGTATTATGTAAG
36079606 TTAAAAGTAATGTATTATGTAAG
1 TTAAAAGTAATGTATTATGTAAG
36079629 TT
1 TT
36079631 TACATATAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.44
Consensus pattern (23 bp):
TTAAAAGTAATGTATTATGTAAG
Found at i:36079679 original size:13 final size:13
Alignment explanation
Indices: 36079661--36079712 Score: 52
Period size: 13 Copynumber: 4.0 Consensus size: 13
36079651 TAAATTTTAG
*
36079661 TAAGTAATGTATT
1 TAAGTAATATATT
*
36079674 TAAGTAACATATT
1 TAAGTAATATATT
* *
36079687 CAAGTAATAAATT
1 TAAGTAATATATT
36079700 TAA-TATATATATT
1 TAAGTA-ATATATT
36079713 AGTAATAAGT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
12 2 0.06
13 29 0.94
ACGTcount: A:0.46, C:0.04, G:0.08, T:0.42
Consensus pattern (13 bp):
TAAGTAATATATT
Found at i:36079774 original size:20 final size:19
Alignment explanation
Indices: 36079742--36079793 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
36079732 TTGTAAAAAT
36079742 ATATTAAAA-ATATAATAA
1 ATATTAAAATATATAATAA
*
36079760 ATATTGAAAATATATATTAA
1 ATATT-AAAATATATAATAA
*
36079780 CT-TTAAAATATATA
1 ATATTAAAATATATA
36079794 TTAATAAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 15 0.50
19 6 0.20
20 9 0.30
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (19 bp):
ATATTAAAATATATAATAA
Found at i:36085796 original size:5 final size:5
Alignment explanation
Indices: 36085786--36085813 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
36085776 AATATATAAC
36085786 AATAT AATAT AATAT AATAT AATAT AAT
1 AATAT AATAT AATAT AATAT AATAT AAT
36085814 TTTTGTGTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
AATAT
Found at i:36085796 original size:15 final size:15
Alignment explanation
Indices: 36085771--36085813 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
36085761 CAACCAACGG
36085771 ATATAA-ATATATAACA
1 ATATAATATA-AT-ACA
*
36085787 ATATAATATAATATA
1 ATATAATATAATACA
36085802 ATATAATATAAT
1 ATATAATATAAT
36085814 TTTTGTGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 14 0.56
16 8 0.32
17 3 0.12
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.37
Consensus pattern (15 bp):
ATATAATATAATACA
Found at i:36088058 original size:29 final size:29
Alignment explanation
Indices: 36088025--36088082 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
36088015 ATATTGTTTT
*
36088025 TTTTTTGAAAAATTACT-AGATTAGGTCGA
1 TTTTTTCAAAAATTACTGA-ATTAGGTCGA
*
36088054 TTTTTTCAAAATTTACTGAATTAGGTCGA
1 TTTTTTCAAAAATTACTGAATTAGGTCGA
36088083 AAAAACAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 25 0.96
30 1 0.04
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.43
Consensus pattern (29 bp):
TTTTTTCAAAAATTACTGAATTAGGTCGA
Found at i:36088463 original size:114 final size:113
Alignment explanation
Indices: 36088249--36089003 Score: 1003
Period size: 114 Copynumber: 6.6 Consensus size: 113
36088239 GACCTTCGAC
* *
36088249 AAACGCCGCTAAAGCACACCATTAGCGGCGCATTATACAAAGCGCCGCAAAAATCTTAACCAAAA
1 AAACGCCGCGAAAGCACACCATTAGCGGCGCATCATACAAAGCGCCGCAAAAATCTTAACCAAAA
36088314 CGCATCGTTCTGGGTTGATGTAATTTAGAATTACTGGCGCTTAACTAA
66 CGCATCGTTCTGGGTTGATGTAATTTAGAATTACTGGCGCTTAACTAA
* * *
36088362 AAACGCCGCGGAAGCACACCATTAGCGGCGCATCGTACAAAGCGACGCAAAAAGTCTTAACCAAA
1 AAACGCCGCGAAAGCACACCATTAGCGGCGCATCATACAAAGCGCCGCAAAAA-TCTTAACCAAA
36088427 ACGCATCGTTCTGGGTTGATGTAATTTAGAATTACTGGCGCTTAACTAA
65 ACGCATCGTTCTGGGTTGATGTAATTTAGAATTACTGGCGCTTAACTAA
* * *
36088476 AAACGCCGCGGAAGCACACCATTAGCGGCGCATCGTACAAAGCGACGCAAAAAGTCTTAACCAAA
1 AAACGCCGCGAAAGCACACCATTAGCGGCGCATCATACAAAGCGCCGCAAAAA-TCTTAACCAAA
36088541 ACGCATCGTTCTGGGTTGATGTAATTTAGAATTACTGGCGCTTAACTAA
65 ACGCATCGTTCTGGGTTGATGTAATTTAGAATTACTGGCGCTTAACTAA
* * *
36088590 AAACGCCGCGGAAGCACACCATTAGCGGCGCATCGTACAAAGCGACGCAAAAAGTCTTAACCAAA
1 AAACGCCGCGAAAGCACACCATTAGCGGCGCATCATACAAAGCGCCGCAAAAA-TCTTAACCAAA
* * *
36088655 ACGCATCGTTCTGGGTTGATGTATTTTAGAATTAGTGGCGCTTGACTAA
65 ACGCATCGTTCTGGGTTGATGTAATTTAGAATTACTGGCGCTTAACTAA
*
36088704 AAACGCCG-GAAAAGCACACCATTAGCGGCGCATCATTCAAAGCGCCGCAAAAAATCTTAACCAA
1 AAACGCCGCG-AAAGCACACCATTAGCGGCGCATCATACAAAGCGCCGC-AAAAATCTTAACCAA
* * * * * ** *
36088768 AACGCATCGTTTTGGGTTGAGGTATTTTAGATTTAGTGGCGCTTAAGGAT
64 AACGCATCGTTCTGGGTTGATGTAATTTAGAATTACTGGCGCTTAACTAA
* * * * * * * *
36088818 AAATGCCGCTAAAGAACACAATTAGAGGCGCATTATTCAAAGCGCCGCAAGAAAACTTAACCAAA
1 AAACGCCGCGAAAGCACACCATTAGCGGCGCATCATACAAAGCGCCGCAA-AAATCTTAACCAAA
* * * * * * *
36088883 ACGCGTCGTTTTTGGTTGAGGTATTTTAGAATTAGTGGCGC-TATAGT-A
65 ACGCATCGTTCTGGGTTGATGTAATTTAGAATTACTGGCGCTTA-ACTAA
* * * * **
36088931 AAACGCCGCTAAAGTACATCATTAGCGGCGCATTATACTGAGCGCCGCGAATAAATCTTAACCAA
1 AAACGCCGCGAAAGCACACCATTAGCGGCGCATCATACAAAGCGCCGC-AA-AAATCTTAACCAA
*
36088996 AATGCATC
64 AACGCATC
36089004 ATTTTAAACC
Statistics
Matches: 592, Mismatches: 43, Indels: 13
0.91 0.07 0.02
Matches are distributed among these distances:
113 93 0.16
114 494 0.83
115 5 0.01
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.23
Consensus pattern (113 bp):
AAACGCCGCGAAAGCACACCATTAGCGGCGCATCATACAAAGCGCCGCAAAAATCTTAACCAAAA
CGCATCGTTCTGGGTTGATGTAATTTAGAATTACTGGCGCTTAACTAA
Found at i:36089549 original size:21 final size:21
Alignment explanation
Indices: 36089525--36089568 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
36089515 AAGGGTACTT
* *
36089525 GGTTTA-ATGGTTTGAGTTTAA
1 GGTTTAGA-GGTTGGAGATTAA
36089546 GGTTTAGAGGTTGGAGATTAA
1 GGTTTAGAGGTTGGAGATTAA
36089567 GG
1 GG
36089569 GATAGGGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (21 bp):
GGTTTAGAGGTTGGAGATTAA
Found at i:36089720 original size:22 final size:23
Alignment explanation
Indices: 36089665--36089722 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
36089655 TTGGGGCTAA
* *
36089665 GGTTTAAGGTTTAAGTGTTAAAG
1 GGTTTAAGGTTTTAGAGTTAAAG
*
36089688 GGTTTAGGGTTTTAGAG-T-AAG
1 GGTTTAAGGTTTTAGAGTTAAAG
36089709 TGGTTTAAGGTTTT
1 -GGTTTAAGGTTTT
36089723 TTGGTTAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 13 0.43
23 14 0.47
ACGTcount: A:0.24, C:0.00, G:0.33, T:0.43
Consensus pattern (23 bp):
GGTTTAAGGTTTTAGAGTTAAAG
Found at i:36090603 original size:190 final size:191
Alignment explanation
Indices: 36090245--36090608 Score: 498
Period size: 190 Copynumber: 1.9 Consensus size: 191
36090235 CTTTCACCTT
* * * *
36090245 TTCAACGGCGATTTCCCCTCTTCTCGGTCGAATATCGGTTCTCGTCTGGGCTGACTGGTAAAAAA
1 TTCAACGACGATTTCCCCTCTTCTCGATCGAATATCGCTTCTCATCTGGGCTGACTGGTAAAAAA
* * * * * *
36090310 AATTTCGAAATCCCTAATTTCTCCGTTGACTCCGTATATGGCTGTTCATTTTTATGTTTGATTTT
66 AATATCCAAATCCCTAATTTATCCGTTGAATACGTATATGGCTATTCATTTTTATGTTTGATTTT
* *****
36090375 TCTTTCTGTAATGCCCGCTTTGTTTTTCCTTTCTCTTTAAATTCCAGAGACCATTCACCCC
131 TCTTTCTCTAATGCCCGCTACAAATTTCCTTTCTCTTTAAATTCCAGAGACCATTCACCCC
* *
36090436 TTCAACGACGATTTCCCCTCTTTTCGATCGAATATTGCTTCTCATCTGGGCTGACTGGT-AAAAA
1 TTCAACGACGATTTCCCCTCTTCTCGATCGAATATCGCTTCTCATCTGGGCTGACTGGTAAAAAA
** * *
36090500 TCTATCCAAATCCCTAATTTATTCGTTGAATACGTATATGGCTATTCATTTTTCTGTTTGATTTT
66 AATATCCAAATCCCTAATTTATCCGTTGAATACGTATATGGCTATTCATTTTTATGTTTGA-TTT
*
36090565 TTCTTTCTCTAATGCTCGC-ACAAATTTCCTTTCTCTTTAAATTC
130 TTCTTTCTCTAATGCCCGCTACAAATTTCCTTTCTCTTTAAATTC
36090609 TGTGTTGCTT
Statistics
Matches: 149, Mismatches: 23, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
190 76 0.51
191 73 0.49
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.42
Consensus pattern (191 bp):
TTCAACGACGATTTCCCCTCTTCTCGATCGAATATCGCTTCTCATCTGGGCTGACTGGTAAAAAA
AATATCCAAATCCCTAATTTATCCGTTGAATACGTATATGGCTATTCATTTTTATGTTTGATTTT
TCTTTCTCTAATGCCCGCTACAAATTTCCTTTCTCTTTAAATTCCAGAGACCATTCACCCC
Found at i:36102755 original size:42 final size:43
Alignment explanation
Indices: 36102643--36102757 Score: 115
Period size: 42 Copynumber: 2.7 Consensus size: 43
36102633 GTTTTTGTAT
* * *
36102643 AAAAGCGCCGCTAAAGAACATGTTCTTTAGCGGGGTTTTAAAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTCTTAAAA
* ***** *
36102686 AAAAACGCCACTATTTTTCATGTTCTTTAGCGGCG-CTTAAGA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTCTTAAAA
* *
36102728 ATAAACGCCGCTAAAGAACATGATCTTTAG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAG
36102758 TTCTTTAGCG
Statistics
Matches: 54, Mismatches: 18, Indels: 1
0.74 0.25 0.01
Matches are distributed among these distances:
42 27 0.50
43 27 0.50
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTCTTAAAA
Found at i:36102787 original size:50 final size:48
Alignment explanation
Indices: 36102733--36102848 Score: 145
Period size: 42 Copynumber: 2.5 Consensus size: 48
36102723 TAAGAATAAA
* *
36102733 CGCCGCTAAAGAACATGATCTTTAGTTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATG-TCTTTAG-TCTTTAACGGCGTTTTTTTCAAAG
36102783 CGCCGCTAAAGAACATG------GTCTTTAACGGCGTTTTTTTCAAAG
1 CGCCGCTAAAGAACATGTCTTTAGTCTTTAACGGCGTTTTTTTCAAAG
36102825 CGCCGCTAAAGAACATGTTCTTTA
1 CGCCGCTAAAGAACATG-TCTTTA
36102849 ACGGCATTTT
Statistics
Matches: 57, Mismatches: 2, Indels: 15
0.77 0.03 0.20
Matches are distributed among these distances:
42 39 0.68
43 1 0.02
50 17 0.30
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (48 bp):
CGCCGCTAAAGAACATGTCTTTAGTCTTTAACGGCGTTTTTTTCAAAG
Found at i:36102818 original size:42 final size:42
Alignment explanation
Indices: 36102759--36102859 Score: 166
Period size: 42 Copynumber: 2.4 Consensus size: 42
36102749 GATCTTTAGT
* *
36102759 TCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATGG
1 TCTTTAACGGCGTTTTTTTCAAAGCGCCGCTAAAGAACATGG
*
36102801 TCTTTAACGGCGTTTTTTTCAAAGCGCCGCTAAAGAACATGT
1 TCTTTAACGGCGTTTTTTTCAAAGCGCCGCTAAAGAACATGG
*
36102843 TCTTTAACGGCATTTTT
1 TCTTTAACGGCGTTTTT
36102860 GTTTGTAAAC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.37
Consensus pattern (42 bp):
TCTTTAACGGCGTTTTTTTCAAAGCGCCGCTAAAGAACATGG
Found at i:36104103 original size:107 final size:104
Alignment explanation
Indices: 36103979--36104191 Score: 295
Period size: 107 Copynumber: 2.0 Consensus size: 104
36103969 GCAAAAAAAT
** * *
36103979 TTTCATTTTGAACAAAATGATGCCGTTTTGCTATTC-ATAAAA-TTTTTATTTTGTTTTTTTTAT
1 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTA-AAAATTTTTTATTTT-ATTTTTTTAT
* *
36104042 AAATTGATTTATTTTTTGCGGCGTTTTTATAAAAAACGCCTCTA
64 AAATTGA--T-TTTTTTGCGGCATTTTTATAAAAAACGCCGCTA
*
36104086 TTTCATTTTGAACAAAATGACACTGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTTATAA
1 TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTTATAA
*
36104151 ATTGATTTTTTTGCGGCATTTTTATGAAAAACGCCGCTA
66 ATTGATTTTTTTGCGGCATTTTTATAAAAAACGCCGCTA
36104190 TT
1 TT
36104192 GCTTACCTTT
Statistics
Matches: 96, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
104 32 0.33
105 1 0.01
107 52 0.54
108 11 0.11
ACGTcount: A:0.28, C:0.11, G:0.11, T:0.50
Consensus pattern (104 bp):
TTTCATTTTGAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTTATAA
ATTGATTTTTTTGCGGCATTTTTATAAAAAACGCCGCTA
Found at i:36104446 original size:237 final size:249
Alignment explanation
Indices: 36103895--36104548 Score: 793
Period size: 237 Copynumber: 2.6 Consensus size: 249
36103885 TTGCTATATA
* * * * * * *
36103895 ATTTTTTTGTGGCGTTTTTTTATAAAAATGCAGCTATTGCTTACCTATT-GCGGCGTTTTTTTAT
1 ATTTTTTTGCGGCATTTTTATA-AAAAACGCCGCTATTGCTTACCT-TTAGCGGCG-TTTGTCAT
* ** *
36103959 GAAAAACACCGCAAAAAAATTTTCATTTTGAACAAAATGATGCCGTTTTGCTATTCATAAAA-TT
63 -AAAAACGCCGCAAAAATTTTTTCATTTTGAACAAAATGACGCCGTTTTGCTATTCATAAAATTT
*
36104023 TTTATTTTGTTTTTTTTATAAATTGATTTATTTTTTGCGGCGTTTTTATAAAAAACGCCTCTATT
127 TTTATTTTG--TTTTTTATAAATTGA-TT-TTTTTTGCGGCGTTTTTATAAAAAACGCCGCTATT
* * *
36104088 TCATTTTGAACAAAATGACACTGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTTATAAAT
188 TCATTTTGAACAAAATGACACTGTTTTGC-ATGCT-AAAA-TTTTTATTTTATATATTGAT--AT
36104153 TG
248 TG
* *
36104155 ATTTTTTTGCGGCATTTTTATGAAAAACGCCGCTATTGCTTACCTTTAGCGGCGTTTTTCATAAA
1 ATTTTTTTGCGGCATTTTTATAAAAAACGCCGCTATTGCTTACCTTTAGCGGCGTTTGTCATAAA
* *
36104220 AACGCTGC-AAATTTTTTTCATTTTGAACAAAATGACGCCGTTTTGCTATT-ATAAAATTTTTTA
66 AACGCCGCAAAAATTTTTTCATTTTGAACAAAATGACGCCGTTTTGCTATTCATAAAATTTTTTA
*
36104283 TTTTGTTTTTTATAAATTTATTTTTTTTGCGGCG-TTTTATAAAAAACGCCGCTATTTCA-TTTG
131 TTTTGTTTTTTATAAATTGATTTTTTTTGCGGCGTTTTTATAAAAAACGCCGCTATTTCATTTTG
*
36104346 AACAAAATGACGCTGTTTTGC-T-CT-AAA-TTTT-TTTTATATATTGAT-TT-
196 AACAAAATGACACTGTTTTGCATGCTAAAATTTTTATTTTATATATTGATATTG
** *
36104393 A-TTTTTTGCGGTGTTTTTATAAAAAAACGCC-CTATTGCTTGCCTTTAGCGGCGTTTGTCATAA
1 ATTTTTTTGCGGCATTTTTAT-AAAAAACGCCGCTATTGCTTACCTTTAGCGGCGTTTGTCATAA
* *
36104456 AAACGCCGCAAAAAATTATTTCATTTTGAACAAAAAGACGCCGTTTTGCT-TTGC-TAAAAATTT
65 AAACGCCGC-AAAAATTTTTTCATTTTGAACAAAATGACGCCGTTTTGCTATT-CAT-AAAATTT
*
36104519 TTTATTTTATTTTTTATAAATTGATTTTTT
127 TTTATTTTGTTTTTTATAAATTGATTTTTT
36104549 ATAAAATAAA
Statistics
Matches: 356, Mismatches: 30, Indels: 36
0.84 0.07 0.09
Matches are distributed among these distances:
237 55 0.15
238 12 0.03
239 39 0.11
240 35 0.10
242 11 0.03
243 4 0.01
245 3 0.01
247 2 0.01
248 1 0.00
250 24 0.07
251 24 0.07
252 12 0.03
253 2 0.01
254 14 0.04
255 6 0.02
256 49 0.14
257 9 0.03
258 9 0.03
259 27 0.08
260 18 0.05
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (249 bp):
ATTTTTTTGCGGCATTTTTATAAAAAACGCCGCTATTGCTTACCTTTAGCGGCGTTTGTCATAAA
AACGCCGCAAAAATTTTTTCATTTTGAACAAAATGACGCCGTTTTGCTATTCATAAAATTTTTTA
TTTTGTTTTTTATAAATTGATTTTTTTTGCGGCGTTTTTATAAAAAACGCCGCTATTTCATTTTG
AACAAAATGACACTGTTTTGCATGCTAAAATTTTTATTTTATATATTGATATTG
Found at i:36105813 original size:113 final size:113
Alignment explanation
Indices: 36105563--36106003 Score: 607
Period size: 114 Copynumber: 3.9 Consensus size: 113
36105553 AGAATTTTTT
* * * *
36105563 GCGGCGCTTTCTTATAAACGCTGGTAAATCCCAAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
* * *
36105628 GTTTTCTTGCGGCG-TTTTTGAGAAAGCGCCGCTAAAGCCCTGAGCATTA
66 GTTTT-TTGCGGCGCTTTCTCA-AAAACGCCGCTAAAGCCCTGAGCATTA
* * *
36105677 GCGGCGCTTTCTTAAAAAAGCCGCTAAATCCCCAAAAGCTCACAGAACAGCGTCGTTGGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
* * * *
36105742 GTTTTTTGCGGCGCTTTCTCAAAAATGCCTCTAAAGGCCTAAGCATTA
66 GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * *
36105790 GCGGCGCTTTCTTAAAAACGCCGCTAAA-CCCTCGAAAGCTCACAAAACGTCGTCTTTGGGCTTA
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCC-CAAAAGCTCACAAAACGGCGTCGTTGGGCTTA
* * * *
36105854 TGTTTTTTTACGGCGCTTTCTCAAAAATGCCGCTAAAGCCCTGAGCGTTA
65 -GGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * *
36105904 GCGGCGCTTTATTAAAAACGCCGCTAAATCCCCAAAAGCTTACAAAACGGCGTCGTTGGGCTTAT
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
*
36105969 GTTTTTTGCGGCGCTTTCTCAGAAACGCCGCTAAA
66 GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAA
36106004 TCCCCGAAAG
Statistics
Matches: 287, Mismatches: 36, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
112 3 0.01
113 115 0.40
114 166 0.58
115 3 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (113 bp):
GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
GTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAAAGCCCTGAGCATTA
Found at i:36105959 original size:227 final size:227
Alignment explanation
Indices: 36105563--36106003 Score: 634
Period size: 227 Copynumber: 1.9 Consensus size: 227
36105553 AGAATTTTTT
* * *
36105563 GCGGCGCTTTCTTATAAACGCTGGTAAATCCCAAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCAAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
* * * * *
36105628 GTTTTCTTGCGGCGTTTTTGAGAAAGCGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAA
66 GTTTTCTTACGGCGTTTCTCAGAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATTAAA
*
36105693 AAAGCCGCTAAATCCCCAAAAGCTCACAGAACAGCGTCGTTGGGCTTAGGTTTTTTGCGGCGCTT
131 AAAGCCGCTAAATCCCCAAAAGCTCACAAAACAGCGTCGTTGGGCTTAGGTTTTTTGCGGCGCTT
* *
36105758 TCTCAAAAATGCCTCTAAAGGCCTAAGCATTA
196 TCTCAAAAACGCCGCTAAAGGCCTAAGCATTA
** * *
36105790 GCGGCGCTTTCTTAAAAACGCCGCTAAA-CCCTCGAAAGCTCACAAAACGTCGTCTTTGGGCTTA
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCC-AAAAAGCTCACAAAACGGCGTCGTTGGGCTTA
* * * *
36105854 TGTTTTTTTACGGCGCTTTCTCA-AAAATGCCGCTAAAGCCCTGAGCGTTAGCGGCGCTTTATTA
65 GGTTTTCTTACGGCG-TTTCTCAGAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATTA
* * * *
36105918 AAAACGCCGCTAAATCCCCAAAAGCTTACAAAACGGCGTCGTTGGGCTTATGTTTTTTGCGGCGC
129 AAAAAGCCGCTAAATCCCCAAAAGCTCACAAAACAGCGTCGTTGGGCTTAGGTTTTTTGCGGCGC
*
36105983 TTTCTCAGAAACGCCGCTAAA
194 TTTCTCAAAAACGCCGCTAAA
36106004 TCCCCGAAAG
Statistics
Matches: 188, Mismatches: 24, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
226 3 0.02
227 180 0.96
228 5 0.03
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.27
Consensus pattern (227 bp):
GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCAAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
GTTTTCTTACGGCGTTTCTCAGAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTATTAAA
AAAGCCGCTAAATCCCCAAAAGCTCACAAAACAGCGTCGTTGGGCTTAGGTTTTTTGCGGCGCTT
TCTCAAAAACGCCGCTAAAGGCCTAAGCATTA
Found at i:36106024 original size:72 final size:72
Alignment explanation
Indices: 36105904--36106074 Score: 236
Period size: 72 Copynumber: 2.4 Consensus size: 72
36105894 CTGAGCGTTA
* * * *
36105904 GCGGCGCTTTATTAAAAACGCCGCTAAATCCCCAAAAGCTTACAAAACGGCGTCGTTGGGCTTAT
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
36105969 GTTTTTT
66 GTTTTTT
* * *** *
36105976 GCGGCGCTTTCTCAGAAACGCCGCTAAATCCCCGAAAGCTCGGGAAACGGTGTCGTTGGGCTTAG
1 GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
36106041 GTTTTTT
66 GTTTTTT
36106048 GCGGCG-TTGTCTCAAAAACGCCGCTAA
1 GCGGCGCTT-TCTCAAAAACGCCGCTAA
36106075 TGCTTATTTT
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
71 2 0.02
72 85 0.98
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.26
Consensus pattern (72 bp):
GCGGCGCTTTCTCAAAAACGCCGCTAAATCCCCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAG
GTTTTTT
Found at i:36144386 original size:18 final size:18
Alignment explanation
Indices: 36144359--36144400 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
36144349 TGCTATAATA
*
36144359 GGGTTTGCATAAACACAT
1 GGGTTCGCATAAACACAT
* *
36144377 GGGTTCGCATAAATATAT
1 GGGTTCGCATAAACACAT
36144395 GGGTTC
1 GGGTTC
36144401 ACACAATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (18 bp):
GGGTTCGCATAAACACAT
Found at i:36145176 original size:49 final size:49
Alignment explanation
Indices: 36145102--36145268 Score: 201
Period size: 49 Copynumber: 3.4 Consensus size: 49
36145092 AACATGCTTA
* * * * *
36145102 CACACTTGTCCTATCAGAATGGTTGAGAAACATAAGATATGTTCTCGCC
1 CACACTTATCTTATCAAAATGGTTGAGGAACATAAAATATGTTCTCGCC
* *
36145151 CACACTTATCTTATCAAAATAGTTGAGGAACATAAAACT-TGTTCTCGCT
1 CACACTTATCTTATCAAAATGGTTGAGGAACATAAAA-TATGTTCTCGCC
* * * *
36145200 CACACTTATCTTATCACAATGGCTGAGGAACATAAAACATGTTCTCACC
1 CACACTTATCTTATCAAAATGGTTGAGGAACATAAAATATGTTCTCGCC
* *
36145249 CACAGTTATCTTATCGAAAT
1 CACACTTATCTTATCAAAAT
36145269 CTGTTGGATA
Statistics
Matches: 100, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
49 99 0.99
50 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.30
Consensus pattern (49 bp):
CACACTTATCTTATCAAAATGGTTGAGGAACATAAAATATGTTCTCGCC
Found at i:36146972 original size:134 final size:134
Alignment explanation
Indices: 36146443--36147074 Score: 668
Period size: 133 Copynumber: 4.7 Consensus size: 134
36146433 TGTCGACTTG
* *
36146443 ACGATCATGAACAATTCATTAAGAGTTCATAGATTTACGATCGCAACTCCATTTAAATAGTTCTC
1 ACGATCATGAACAATTCATTAAGAGTTCATCGATTTACGATCGCAACTCCATTTAAATAGTTCAC
* * * * *
36146508 TAATTTATGA-CTACAACTGTTATTTTTAAAGCTCGTTGATTTACGACCACAACTTCAGTTCATT
66 TGATTTATGATC-ACAACTATCATTTTTAAAGCTCGTTGATTTACGATCACAACTTCAGTTGATT
*
36146572 TATTT
130 GATTT
* ** ** * *
36146577 ACGATCATGAACAATTCATTAAGATTTCATCGATTTAAAATCATAACT-CATTTAAATAATTCAT
1 ACGATCATGAACAATTCATTAAGAGTTCATCGATTTACGATCGCAACTCCATTTAAATAGTTCAC
* * * * * *
36146641 TGATTTACGATCACAATTGTCATTTTTAAGGCTCGTTGATTTATGATCACAGCTTCAGTTGATTG
66 TGATTTATGATCACAACTATCATTTTTAAAGCTCGTTGATTTACGATCACAACTTCAGTTGATTG
*
36146706 AGTT
131 ATTT
* * * * * * *
36146710 ACAATCATGAACAATTCATTAAGACTTCGTCGACTTAC-ATTGCAACTCGATTTAAATAGTACAC
1 ACGATCATGAACAATTCATTAAGAGTTCATCGATTTACGATCGCAACTCCATTTAAATAGTTCAC
* * * *
36146774 TGATTTATGATTACAACTATCATTTTTAAAGCTTGTTGATTTACAATCA-AAGCTTTAGTTGATT
66 TGATTTATGATCACAACTATCATTTTTAAAGCTCGTTGATTTACGATCACAA-CTTCAGTTGATT
36146838 GATTT
130 GATTT
* * * *
36146843 ATGATCATGAACAATTCATTAAGAGTTCACCGACTTACGATCGCAACTCCATTTAAACAGTTCAC
1 ACGATCATGAACAATTCATTAAGAGTTCATCGATTTACGATCGCAACTCCATTTAAATAGTTCAC
* * ** * * * * *
36146908 TGATTTATGATCACATA-TATCCTTTTCAAATATCGCTAATTAATGAGCACAA-TTGCAGTTGAT
66 TGATTTATGATCACA-ACTATCATTTTTAAAGCTCGTTGATTTACGATCACAACTT-CAGTTGAT
36146971 TGATTT
129 TGATTT
* * * * *
36146977 ACGATCAAGAACAATTCATTAAGAGTCCACCGATTTACGATCGTAA-TACCATTTCAATAGTT-A
1 ACGATCATGAACAATTCATTAAGAGTTCATCGATTTACGATCGCAACT-CCATTTAAATAGTTCA
* * *
36147040 TTTGATTTATGATCACAAATATAATTTTTAAAGCT
65 -CTGATTTATGATCACAACTATCATTTTTAAAGCT
36147075 TGCCAATTTA
Statistics
Matches: 410, Mismatches: 78, Indels: 20
0.81 0.15 0.04
Matches are distributed among these distances:
132 7 0.02
133 208 0.51
134 192 0.47
135 3 0.01
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (134 bp):
ACGATCATGAACAATTCATTAAGAGTTCATCGATTTACGATCGCAACTCCATTTAAATAGTTCAC
TGATTTATGATCACAACTATCATTTTTAAAGCTCGTTGATTTACGATCACAACTTCAGTTGATTG
ATTT
Found at i:36147262 original size:35 final size:36
Alignment explanation
Indices: 36147212--36147290 Score: 90
Period size: 36 Copynumber: 2.2 Consensus size: 36
36147202 AAGTATTTTC
* * * *
36147212 TGATTTATGATCACAAC-TCCA-TTTAAATAGTTCGT
1 TGATTTACGACCACAACTTCAAGTTTAAA-AGTTCAT
*
36147247 TGATTTACGACCACAACTTTAAGTTTAAAAGTTCAT
1 TGATTTACGACCACAACTTCAAGTTTAAAAGTTCAT
36147283 TGATTTAC
1 TGATTTAC
36147291 AATCATAGCT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
35 15 0.41
36 16 0.43
37 6 0.16
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.39
Consensus pattern (36 bp):
TGATTTACGACCACAACTTCAAGTTTAAAAGTTCAT
Found at i:36147311 original size:134 final size:134
Alignment explanation
Indices: 36147169--36147424 Score: 334
Period size: 134 Copynumber: 1.9 Consensus size: 134
36147159 TCACAACTTG
* ** ** **
36147169 AGTTCATTGATTTACGATCATGAACAGTTCATTAAGTA-TTTTCTGATTTATGATCACAACTCCA
1 AGTTCATTGATTTACGATCATGAACAATTCATTAAG-AGTTCGCCAATTTAAAATCACAACTCCA
* * *
36147233 TTTAAATAGTTCGTTGATTTACGACCACAACTTTAAGTTTAAAAGTTCATTGATTTACAATCATA
65 TTTAAATAGTTCGTTGATTTACGACCACAACTTTAACTTTAAAAGTTCACTAATTTACAATCATA
36147298 GCTTT
130 GCTTT
* * * * *
36147303 AGTTCATTGATTTACGATCATTAGCAATTTATTCAGAGTTCGCCAATTTAAAATCGCAACTCCAT
1 AGTTCATTGATTTACGATCATGAACAATTCATTAAGAGTTCGCCAATTTAAAATCACAACTCCAT
* * *
36147368 TTAAATAGTTCGTTGATTTACGATCACAACTTTGACTTTTAAAGTTCACTAATTTAC
66 TTAAATAGTTCGTTGATTTACGACCACAACTTTAACTTTAAAAGTTCACTAATTTAC
36147425 GATTACAACT
Statistics
Matches: 103, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
133 1 0.01
134 102 0.99
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.39
Consensus pattern (134 bp):
AGTTCATTGATTTACGATCATGAACAATTCATTAAGAGTTCGCCAATTTAAAATCACAACTCCAT
TTAAATAGTTCGTTGATTTACGACCACAACTTTAACTTTAAAAGTTCACTAATTTACAATCATAG
CTTT
Found at i:36147479 original size:243 final size:243
Alignment explanation
Indices: 36147193--36147637 Score: 599
Period size: 243 Copynumber: 1.8 Consensus size: 243
36147183 CGATCATGAA
* **
36147193 CAGTTCATTAAGTATTTTCTGATTTATGATCACAACTCCATTTAAATAGTTCGTTGATTTACGAC
1 CAGTTCATTAAGTATTTTCTGATTTACGATCACAACTCCATTTAAATAGTTCACTGATTTACGAC
* * * * *
36147258 CACAACTTTAAGTTTAAAAGTTCATTGATTTACAATCATAGCTTTAGTTCATTGATTTACGATCA
66 CACAACTTTAAGTTTAAAAGCTCAGTGATTTACAATCATAACTTCAGATCATTGATTTACGATCA
* * * * *
36147323 TTAGCAATTTATTCAGA-GTTCGCCAATTTAAAATCGCAACTCCATTTAAATAGTTCGTTGATTT
131 TGAACAATTCATTAAGAGGTT-GCCAATTTAAAATCGCAACTCCATTTAAAAAGTTCGTTGATTT
*
36147387 ACGATCACAACTTTGACTTTTAAAGTTCACTAATTTACGATTACAACTT
195 ACCATCACAACTTTGACTTTTAAAGTTCACTAATTTACGATTACAACTT
*
36147436 CAGTTCATTAAG-AGTTTGT-TGATTTACGATCCCAACTCCATTTAAATAGTTCACTGATTTACG
1 CAGTTCATTAAGTA-TTT-TCTGATTTACGATCACAACTCCATTTAAATAGTTCACTGATTTACG
* ** * * * *
36147499 ATCACAGTTTTCATTTTTAAAGCTCAGTGATTTACAATCATAACTTCAGATCATTGATTTACTAT
64 ACCACAACTTTAAGTTTAAAAGCTCAGTGATTTACAATCATAACTTCAGATCATTGATTTACGAT
* * * * *
36147564 TATGAACAATTCATTAAGAGGTTGTCGATTTATAATCGCAACTCCATTTAAAAAGTTTGTTGATT
129 CATGAACAATTCATTAAGAGGTTGCCAATTTAAAATCGCAACTCCATTTAAAAAGTTCGTTGATT
36147629 TACCATCAC
194 TACCATCAC
36147638 CACTATCACT
Statistics
Matches: 172, Mismatches: 27, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
242 1 0.01
243 167 0.97
244 4 0.02
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.39
Consensus pattern (243 bp):
CAGTTCATTAAGTATTTTCTGATTTACGATCACAACTCCATTTAAATAGTTCACTGATTTACGAC
CACAACTTTAAGTTTAAAAGCTCAGTGATTTACAATCATAACTTCAGATCATTGATTTACGATCA
TGAACAATTCATTAAGAGGTTGCCAATTTAAAATCGCAACTCCATTTAAAAAGTTCGTTGATTTA
CCATCACAACTTTGACTTTTAAAGTTCACTAATTTACGATTACAACTT
Found at i:36147685 original size:54 final size:54
Alignment explanation
Indices: 36147603--36147709 Score: 196
Period size: 54 Copynumber: 2.0 Consensus size: 54
36147593 TTATAATCGC
36147603 AACTCCATTTAAAAAGTTTGTTGATTTACCATCACCACTATCACTTTTCTAGCA
1 AACTCCATTTAAAAAGTTTGTTGATTTACCATCACCACTATCACTTTTCTAGCA
* *
36147657 AACTCCATTTAAACAGTTTGTTGATTTACCATCACCACTGTCACTTTTCTAGC
1 AACTCCATTTAAAAAGTTTGTTGATTTACCATCACCACTATCACTTTTCTAGC
36147710 TCATTAAGAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.29, C:0.25, G:0.08, T:0.37
Consensus pattern (54 bp):
AACTCCATTTAAAAAGTTTGTTGATTTACCATCACCACTATCACTTTTCTAGCA
Found at i:36149572 original size:71 final size:70
Alignment explanation
Indices: 36149455--36149652 Score: 204
Period size: 71 Copynumber: 2.8 Consensus size: 70
36149445 TATGACGATC
* * *** * *
36149455 TGTGATGGCTAAGATCCAACATAAGTTGGGGATTCTTGACAGCTTGAGTGAGCAGCATCGGATCG
1 TGTGATGGATGAGATCCAACACGTGTTGTGGATTCTTGACAGCTTGAGTGAGCAACATCGGAT--
36149520 T-TA-TT
64 TATACTT
*
36149525 TAGTGATGGATGAGATCCAACACGTGTTGTGGATTCTTGACAGCTTGAGTGAGCAACATCGTATT
1 T-GTGATGGATGAGATCCAACACGTGTTGTGGATTCTTGACAGCTTGAGTGAGCAACATCGGATT
36149590 ATACTT
65 ATACTT
* * * * * *
36149596 TGTCGATGGTTGAGATCTAGCACGTGTTACT-GATTCTCGACATCTTGAGTGAGCAAC
1 TGT-GATGGATGAGATCCAACACGTGTT-GTGGATTCTTGACAGCTTGAGTGAGCAAC
36149653 GTCAAATAAA
Statistics
Matches: 109, Mismatches: 14, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
69 1 0.01
70 5 0.05
71 102 0.94
72 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (70 bp):
TGTGATGGATGAGATCCAACACGTGTTGTGGATTCTTGACAGCTTGAGTGAGCAACATCGGATTA
TACTT
Found at i:36153241 original size:15 final size:15
Alignment explanation
Indices: 36153221--36153250 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
36153211 AACTAAGAAT
36153221 GAATCAAAAACCTAA
1 GAATCAAAAACCTAA
*
36153236 GAATCAAAACCCTAA
1 GAATCAAAAACCTAA
36153251 AATTGTGTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.23, G:0.07, T:0.13
Consensus pattern (15 bp):
GAATCAAAAACCTAA
Found at i:36171201 original size:34 final size:36
Alignment explanation
Indices: 36171151--36171235 Score: 95
Period size: 36 Copynumber: 2.4 Consensus size: 36
36171141 AGAATTTGTC
* *
36171151 GATTTACGACCGCAACTCT-A-TTTAAACAGTTCA-T
1 GATTTACGATCACAACTCTCATTTTAAA-AGTTCACT
* *
36171185 GATTTACGATCACAACTGTCATTTTTAAAGTTCACT
1 GATTTACGATCACAACTCTCATTTTAAAAGTTCACT
*
36171221 TATTTACGATCACAA
1 GATTTACGATCACAA
36171236 TTTCAATTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
34 16 0.37
35 7 0.16
36 20 0.47
ACGTcount: A:0.33, C:0.21, G:0.11, T:0.35
Consensus pattern (36 bp):
GATTTACGATCACAACTCTCATTTTAAAAGTTCACT
Found at i:36171380 original size:134 final size:134
Alignment explanation
Indices: 36171110--36171654 Score: 580
Period size: 133 Copynumber: 4.1 Consensus size: 134
36171100 GGGTGTTTCA
* * ** * * *
36171110 TCATTGATTTAAGGTCATAAACAATTCATTAAGAATTTGTCGATTTACGACCGCAACTCTATTTA
1 TCATTGATTTACGATCATAAACAATTCATTAAGAATTCATCGATTTACGATCACAACTCCATTTA
* ** *
36171175 AACAGTTCA-TGATTTACGATCACAACTGTCATTTTTAAAGTTCACTTATTTACGATCACAATTT
66 AACAGTTCATTGATTTACGATCACAACTGTCACTTTTAAAACTCACTTATTTACGATCACAACTT
*
36171239 CAAT
131 CAGT
* * * *
36171243 TCATTTATTTACGATCATAAACAATTCATTAA-AAGTTTATCGACTT-CTGATTACAACTCCATT
1 TCATTGATTTACGATCATAAACAATTCATTAAGAA-TTCATCGATTTAC-GATCACAACTCCATT
* * * * *
36171306 TAAACAGTTCACTGATTTATGATCACAACTGTCACTTTTAAAACTCGCTAATTTACGATCACAGC
64 TAAACAGTTCATTGATTTACGATCACAACTGTCACTTTTAAAACTCACTTATTTACGATCACAAC
*
36171371 TTGAGT
129 TTCAGT
* * * * *
36171377 TCATTGATTTACGATCATGAACAATTCATTAAGAATTCGTCGATTTACTATCGCAGCTCCA-TTA
1 TCATTGATTTACGATCATAAACAATTCATTAAGAATTCATCGATTTACGATCACAACTCCATTTA
* * * * * * * * **
36171441 AGCAGTTCATTGATATAGGATCATAATTGTCATTTTTAAAACTCA-TTGGTTTACGACCACAGTT
66 AACAGTTCATTGATTTACGATCACAACTGTCACTTTTAAAACTCACTT-ATTTACGATCACAACT
36171505 TCAGT
130 TCAGT
* * * *
36171510 TCATTGATTTACGATCATGAGCAATTCATTAAGAGTTCATCGATTTACAATCGA-AACTCCATTT
1 TCATTGATTTACGATCATAAACAATTCATTAAGAATTCATCGATTTACGATC-ACAACTCCATTT
* * * * ** *
36171574 AAACAATTCATTGATTTACAATCACAACAGTCACTTTTAAAGCTTGCTTATTTACTATCACAACT
65 AAACAGTTCATTGATTTACGATCACAACTGTCACTTTTAAAACTCACTTATTTACGATCACAACT
36171639 TCAGT
130 TCAGT
36171644 TCATTGATTTA
1 TCATTGATTTA
36171655 TGATTGCATC
Statistics
Matches: 339, Mismatches: 64, Indels: 17
0.81 0.15 0.04
Matches are distributed among these distances:
132 4 0.01
133 171 0.50
134 159 0.47
135 5 0.01
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (134 bp):
TCATTGATTTACGATCATAAACAATTCATTAAGAATTCATCGATTTACGATCACAACTCCATTTA
AACAGTTCATTGATTTACGATCACAACTGTCACTTTTAAAACTCACTTATTTACGATCACAACTT
CAGT
Found at i:36171423 original size:63 final size:63
Alignment explanation
Indices: 36171356--36171557 Score: 151
Period size: 63 Copynumber: 3.1 Consensus size: 63
36171346 AAACTCGCTA
*
36171356 ATTTACGATCACAGCTTGAGTTCATTGATTTACGATCATGAACAATTCATTAAGAATTCGTCG
1 ATTTACGATCACAGCTTGAGTTCATTGATTTACGATCATGAACAATTCATTAAGAATTCATCG
* * * * *
36171419 ATTTACTATCGCAGCTCCATTAAGCAGTTCATTGATATAGGATCAT-AATTGTC-ATT-TTTAA-
1 ATTTACGATCACAG---C-TT--G-AGTTCATTGATTTACGATCATGAA----CAATTCATTAAG
* *
36171480 AACTCATTG
55 AATTCATCG
* * * * * *
36171489 GTTTACGACCACAGTTTCAGTTCATTGATTTACGATCATGAGCAATTCATTAAGAGTTCATCG
1 ATTTACGATCACAGCTTGAGTTCATTGATTTACGATCATGAACAATTCATTAAGAATTCATCG
36171552 ATTTAC
1 ATTTAC
36171558 AATCGAAACT
Statistics
Matches: 102, Mismatches: 22, Indels: 30
0.66 0.14 0.19
Matches are distributed among these distances:
60 1 0.01
61 3 0.03
62 4 0.04
63 42 0.41
64 1 0.01
66 3 0.03
67 2 0.02
69 3 0.03
70 35 0.34
71 4 0.04
72 3 0.03
73 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (63 bp):
ATTTACGATCACAGCTTGAGTTCATTGATTTACGATCATGAACAATTCATTAAGAATTCATCG
Found at i:36171591 original size:267 final size:267
Alignment explanation
Indices: 36171110--36171654 Score: 684
Period size: 267 Copynumber: 2.0 Consensus size: 267
36171100 GGGTGTTTCA
* * *
36171110 TCATTGATTTAAGGTCATAAACAATTCATTAAGAATTTGTCGATTTACGACCGCAACTCTATTTA
1 TCATTGATTTAAGATCATAAACAATTCATTAAGAATTCGTCGATTTACGACCGCAACTCCATTTA
* ** *
36171175 AACAGTTCATGATTTACGATCACAACTGTCATTTTTAAAGTTCACTTATTTACGATCACAATTTC
66 AACAGTTCATGATATACGATCACAACTGTCATTTTTAAAACTCACTTATTTACGACCACAATTTC
* * * *
36171240 AATTCATTTATTTACGATCATAAACAATTCATTAAAAGTTTATCGACTTCTGATTACAACTCCAT
131 AATTCATTGATTTACGATCATAAACAATTCATTAAAAGTTCATCGACTTCTAATGACAACTCCAT
* ** * *
36171305 TTAAACAGTTCACTGATTTATGATCACAACTGTCACTTTTAAAACTCGCTAATTTACGATCACAG
196 TTAAACAATTCACTGATTTACAATCACAACAGTCACTTTTAAAACTCGCTAATTTACGATCACAA
*
36171370 CTTGAGT
261 CTTCAGT
* * * * *
36171377 TCATTGATTTACGATCATGAACAATTCATTAAGAATTCGTCGATTTACTATCGCAGCTCCA-TTA
1 TCATTGATTTAAGATCATAAACAATTCATTAAGAATTCGTCGATTTACGACCGCAACTCCATTTA
* * * * * *
36171441 AGCAGTTCATTGATATAGGATCATAATTGTCATTTTTAAAACTCA-TTGGTTTACGACCACAGTT
66 AACAGTTCA-TGATATACGATCACAACTGTCATTTTTAAAACTCACTT-ATTTACGACCACAATT
* * * * *
36171505 TCAGTTCATTGATTTACGATCATGAGCAATTCATTAAGAGTTCATCGATTTAC-AATCGA-AACT
129 TCAATTCATTGATTTACGATCATAAACAATTCATTAAAAGTTCATCGACTT-CTAAT-GACAACT
* * * * *
36171568 CCATTTAAACAATTCATTGATTTACAATCACAACAGTCACTTTTAAAGCTTGCTTATTTACTATC
192 CCATTTAAACAATTCACTGATTTACAATCACAACAGTCACTTTTAAAACTCGCTAATTTACGATC
36171633 ACAACTTCAGT
257 ACAACTTCAGT
36171644 TCATTGATTTA
1 TCATTGATTTA
36171655 TGATTGCATC
Statistics
Matches: 236, Mismatches: 38, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
266 13 0.06
267 221 0.94
268 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (267 bp):
TCATTGATTTAAGATCATAAACAATTCATTAAGAATTCGTCGATTTACGACCGCAACTCCATTTA
AACAGTTCATGATATACGATCACAACTGTCATTTTTAAAACTCACTTATTTACGACCACAATTTC
AATTCATTGATTTACGATCATAAACAATTCATTAAAAGTTCATCGACTTCTAATGACAACTCCAT
TTAAACAATTCACTGATTTACAATCACAACAGTCACTTTTAAAACTCGCTAATTTACGATCACAA
CTTCAGT
Found at i:36171844 original size:134 final size:134
Alignment explanation
Indices: 36171650--36171909 Score: 344
Period size: 134 Copynumber: 1.9 Consensus size: 134
36171640 CAGTTCATTG
* * * * * * * *
36171650 ATTTATGATTGCATCTCCATTTAAACAGTTTTCTAATTTATGATCACAATTTTTACTTTTAAAGC
1 ATTTATGATCGCAACTCCATTTAAAAAGTTGTCTAATTTACGATCACAAATGTCACTTTTAAAGC
*
36171715 TCGCTGATGTACGATCACAGCTTCAGTT-ATTTGATTTACAATCATGAATAATTCATTAAGAATT
66 TCGCTGATGTACGATCACAGCTTCAGTTCA-TTGATTTACAATCATGAACAATTCATTAAGAATT
36171779 CACCA
130 CACCA
* *
36171784 ATTTATGATCGCAACTCCATTTAAAAAGCTTGT-TGATTTACGATCACAAATGTCATTTTTAAAG
1 ATTTATGATCGCAACTCCATTTAAAAAG-TTGTCTAATTTACGATCACAAATGTCACTTTTAAAG
* * * * *
36171848 CTCGTTGATTTACGATCACAGCTTCTGTTCATTGATTTACGATTATGAACAATTCATTAAGA
65 CTCGCTGATGTACGATCACAGCTTCAGTTCATTGATTTACAATCATGAACAATTCATTAAGA
36171910 GTTCGTAAAT
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
134 104 0.96
135 4 0.04
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.39
Consensus pattern (134 bp):
ATTTATGATCGCAACTCCATTTAAAAAGTTGTCTAATTTACGATCACAAATGTCACTTTTAAAGC
TCGCTGATGTACGATCACAGCTTCAGTTCATTGATTTACAATCATGAACAATTCATTAAGAATTC
ACCA
Found at i:36178321 original size:26 final size:27
Alignment explanation
Indices: 36178287--36178344 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
36178277 ATGATTTGGC
* *
36178287 TTTTTATTAT-TTAAATTTTT-ATAAT
1 TTTTTATTATATAAAATTTTTAATAAG
36178312 TTTTTAATTATATAAAATTTTTAATAAG
1 TTTTT-ATTATATAAAATTTTTAATAAG
36178340 TTTTT
1 TTTTT
36178345 CTCGTCCATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
25 5 0.18
26 5 0.18
27 9 0.32
28 9 0.32
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (27 bp):
TTTTTATTATATAAAATTTTTAATAAG
Found at i:36183683 original size:64 final size:64
Alignment explanation
Indices: 36183609--36183740 Score: 264
Period size: 64 Copynumber: 2.1 Consensus size: 64
36183599 GATGACCGGA
36183609 TTCTGAAGGTTACGTTGGCCATCGAAATGGCCTAATAAAACCACTAGAGTTTATAAAACAGTCT
1 TTCTGAAGGTTACGTTGGCCATCGAAATGGCCTAATAAAACCACTAGAGTTTATAAAACAGTCT
36183673 TTCTGAAGGTTACGTTGGCCATCGAAATGGCCTAATAAAACCACTAGAGTTTATAAAACAGTCT
1 TTCTGAAGGTTACGTTGGCCATCGAAATGGCCTAATAAAACCACTAGAGTTTATAAAACAGTCT
36183737 TTCT
1 TTCT
36183741 AAAACATTTG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 68 1.00
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (64 bp):
TTCTGAAGGTTACGTTGGCCATCGAAATGGCCTAATAAAACCACTAGAGTTTATAAAACAGTCT
Found at i:36206718 original size:153 final size:153
Alignment explanation
Indices: 36206440--36206745 Score: 549
Period size: 153 Copynumber: 2.0 Consensus size: 153
36206430 ATATTGCCGA
* *
36206440 AGAAAGTTTGAACTGGTCATAGAGGGAGTTGAGAAGAAATCGGTGGAGTGATAATGGGAGAGATT
1 AGAAAGTTTGAACTAGTCATAGAGGGAGTTGAGAAGAAATCGGTGGAGTGATAAGGGGAGAGATT
* * *
36206505 TGAGGAGAGAATGTTGAGATTTGGTGAGGTTGTTGTTGTGGAGAGTTATATATATCACATCTCAT
66 TGAGGAGAGAATATTGAGATTTGGGGAGGTTCTTGTTGTGGAGAGTTATATATATCACATCTCAT
36206570 TTGTTCCTTGTTCTGAATGGGGG
131 TTGTTCCTTGTTCTGAATGGGGG
36206593 AGAAAGTTTGAACTAGTCATAGAGGGAGTTGAGAAGAAATCGGTGGAGTGATAAGGGGAGAGATT
1 AGAAAGTTTGAACTAGTCATAGAGGGAGTTGAGAAGAAATCGGTGGAGTGATAAGGGGAGAGATT
* *
36206658 TGATGAGAGAATATTTAGATTTGGGGAGGTTCTTGTTGTGGAGAGTTATATATATCACATCTCAT
66 TGAGGAGAGAATATTGAGATTTGGGGAGGTTCTTGTTGTGGAGAGTTATATATATCACATCTCAT
36206723 TTGTTCCTTGTTCTGAATGGGGG
131 TTGTTCCTTGTTCTGAATGGGGG
36206746 GAGATCGACG
Statistics
Matches: 146, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
153 146 1.00
ACGTcount: A:0.28, C:0.07, G:0.33, T:0.32
Consensus pattern (153 bp):
AGAAAGTTTGAACTAGTCATAGAGGGAGTTGAGAAGAAATCGGTGGAGTGATAAGGGGAGAGATT
TGAGGAGAGAATATTGAGATTTGGGGAGGTTCTTGTTGTGGAGAGTTATATATATCACATCTCAT
TTGTTCCTTGTTCTGAATGGGGG
Found at i:36207351 original size:27 final size:27
Alignment explanation
Indices: 36207328--36207608 Score: 325
Period size: 27 Copynumber: 10.5 Consensus size: 27
36207318 ATACCCCCAA
36207328 AGGGTAAAATGACCGTAATGCCCCTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* ** *
36207355 AAGGTAAAATGGTCGTAATGCCCCTAT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* * *
36207382 AAGGTAAAATAACCGTAATACCCCTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* *
36207409 AGGGTAAAATGACCGTAATACCCCTAT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* * * *
36207436 AGGTTAGAATGACCATAATGCCCCTAT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* * * *
36207463 AGGGTAAAATAATCGTAAAGCACCTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* *
36207490 AGGGTAAAATGACCGTAATACCTCTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* *
36207517 AGGATAAAATGACCGTAATGCCCTTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
* *
36207544 AGGGTAAAATGACCGTAATACCCTTGT
1 AGGGTAAAATGACCGTAATGCCCCTGT
36207571 AGGGTAAAATGACCGTAATG-CCCTGGT
1 AGGGTAAAATGACCGTAATGCCCCT-GT
36207598 -GGG-AAAATGAC
1 AGGGTAAAATGAC
36207609 TATTTTTTTC
Statistics
Matches: 215, Mismatches: 38, Indels: 4
0.84 0.15 0.02
Matches are distributed among these distances:
25 8 0.04
26 6 0.03
27 201 0.93
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.23
Consensus pattern (27 bp):
AGGGTAAAATGACCGTAATGCCCCTGT
Found at i:36207681 original size:24 final size:25
Alignment explanation
Indices: 36207654--36207711 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
36207644 CTGTGGTTAA
* *
36207654 ATGATTGATTTGTCTGTG-TTTGGT
1 ATGACTGATTTGTATGTGATTTGGT
*
36207678 ATGACTGATTTGTATGTGATTT-GA
1 ATGACTGATTTGTATGTGATTTGGT
36207702 ATGACTGATT
1 ATGACTGATT
36207712 CTGAGCACGG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 27 0.90
25 3 0.10
ACGTcount: A:0.21, C:0.05, G:0.26, T:0.48
Consensus pattern (25 bp):
ATGACTGATTTGTATGTGATTTGGT
Found at i:36207929 original size:32 final size:32
Alignment explanation
Indices: 36207883--36208213 Score: 269
Period size: 32 Copynumber: 10.4 Consensus size: 32
36207873 ACTGCGATGC
* *
36207883 TACTAATGGCTTTGTGCCGATCATAGTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* *
36207915 TACTGATGGCTTTGTACCGATCATAGTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* *
36207947 TACTAATGGCTTTGTGTCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * * * *
36207979 TACCGATGGCTATATGCTGATCAT-TTCACTGT
1 TACTGATGGCTTTGTGCCGATCATATT-ACCGT
36208011 TACTGATGG-TTGTGTGCCGATCATATTACCGT
1 TACTGATGGCTT-TGTGCCGATCATATTACCGT
** * * *
36208043 TACCAATGG-TTGTATGCTGATCAT-TTCACTGT
1 TACTGATGGCTT-TGTGCCGATCATATT-ACCGT
* * * * *
36208075 TACTGATGGCTATGTACCGATCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * *
36208107 CACTGATGGCTTTATGCCGATCATGTTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * * * *
36208139 TACTGATGG-TTGTGTGTCAATCATATCACTGC
1 TACTGATGGCTT-TGTGCCGATCATATTACCGT
* * * *
36208171 TACTGATGGCTTTGTGGCAATCACATTACTG-
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
*
36208202 TACTTATGGCTT
1 TACTGATGGCTT
36208214 GTAGCAATTC
Statistics
Matches: 240, Mismatches: 51, Indels: 17
0.78 0.17 0.06
Matches are distributed among these distances:
31 18 0.08
32 216 0.90
33 6 0.03
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATTACCGT
Found at i:36210034 original size:23 final size:23
Alignment explanation
Indices: 36210008--36210057 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
36209998 ACAGGCTTTT
*
36210008 AAGTATTTTAAAAACACATAAGA
1 AAGTATTTTAAAAACACACAAGA
*
36210031 AAGTGTTTTAAAAACACACAAGA
1 AAGTATTTTAAAAACACACAAGA
36210054 AAGT
1 AAGT
36210058 TATAGGATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.54, C:0.10, G:0.12, T:0.24
Consensus pattern (23 bp):
AAGTATTTTAAAAACACACAAGA
Found at i:36216794 original size:17 final size:17
Alignment explanation
Indices: 36216768--36216802 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
36216758 TCTTGTCCCC
36216768 AGCCTCAAAACGTTACA
1 AGCCTCAAAACGTTACA
*
36216785 AGCCTTAAAACGTTACA
1 AGCCTCAAAACGTTACA
36216802 A
1 A
36216803 CTTGAAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.26, G:0.11, T:0.20
Consensus pattern (17 bp):
AGCCTCAAAACGTTACA
Found at i:36218891 original size:18 final size:18
Alignment explanation
Indices: 36218868--36218910 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
36218858 TTCGACGTTT
36218868 GGGTTTGAAAAGTTTGAA
1 GGGTTTGAAAAGTTTGAA
36218886 GGGTTTGAAAAGTTTGAA
1 GGGTTTGAAAAGTTTGAA
36218904 GGGTTTG
1 GGGTTTG
36218911 CAACCACAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (18 bp):
GGGTTTGAAAAGTTTGAA
Found at i:36218909 original size:9 final size:9
Alignment explanation
Indices: 36218868--36218910 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
36218858 TTCGACGTTT
36218868 GGGTTTGAA
1 GGGTTTGAA
**
36218877 AAGTTTGAA
1 GGGTTTGAA
36218886 GGGTTTGAA
1 GGGTTTGAA
**
36218895 AAGTTTGAA
1 GGGTTTGAA
36218904 GGGTTTG
1 GGGTTTG
36218911 CAACCACAGA
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.28, C:0.00, G:0.37, T:0.35
Consensus pattern (9 bp):
GGGTTTGAA
Found at i:36220743 original size:24 final size:24
Alignment explanation
Indices: 36220716--36220763 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
36220706 TTCTATAATC
*
36220716 ATGAATTTGAATTTAATTTATTAT
1 ATGAATTTCAATTTAATTTATTAT
*
36220740 ATGAATTTCAATTTTATTTATTAT
1 ATGAATTTCAATTTAATTTATTAT
36220764 GTAAATGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.35, C:0.02, G:0.06, T:0.56
Consensus pattern (24 bp):
ATGAATTTCAATTTAATTTATTAT
Found at i:36223449 original size:22 final size:22
Alignment explanation
Indices: 36223423--36223465 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
36223413 GGGTTAGGTT
*
36223423 AATTGGGTTTAGCGTTTGGGCC
1 AATTGGGTTTAGCATTTGGGCC
*
36223445 AATTGGGTTTAGTATTTGGGC
1 AATTGGGTTTAGCATTTGGGC
36223466 TTGGGGTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.16, C:0.09, G:0.35, T:0.40
Consensus pattern (22 bp):
AATTGGGTTTAGCATTTGGGCC
Found at i:36223798 original size:44 final size:44
Alignment explanation
Indices: 36223749--36224107 Score: 425
Period size: 44 Copynumber: 8.2 Consensus size: 44
36223739 TATAGAGACT
* * * * **
36223749 AATCTTCCACCTATTCCGCTGTTGGTCAGGGAGATAGGACTTGT
1 AATCTTCAACCTATTCCGCTGCTGGTCAGGGAAATAGGACATAC
* * * *
36223793 AATCTTCAACCTATTCCGCTGCTAGTCAGGGATATAGGACTTGC
1 AATCTTCAACCTATTCCGCTGCTGGTCAGGGAAATAGGACATAC
* * *
36223837 AATCCTCAACCTATTCCGCTGCTGGTCTGAGAAATAGGACATAC
1 AATCTTCAACCTATTCCGCTGCTGGTCAGGGAAATAGGACATAC
*
36223881 AATCTTCAACCTATTCCGCTGCTGGTCTA-GGAAATAGGACATTC
1 AATCTTCAACCTATTCCGCTGCTGGTC-AGGGAAATAGGACATAC
* * *
36223925 AATCTTCAACCTATTTCGCTCCTGGT-ATGGGAAATAGGGCATAC
1 AATCTTCAACCTATTCCGCTGCTGGTCA-GGGAAATAGGACATAC
* * * *
36223969 AGTCTTCAACCTATTCCGCTACTGGTCTGGGAAATAGGGCATAC
1 AATCTTCAACCTATTCCGCTGCTGGTCAGGGAAATAGGACATAC
* ** *
36224013 AATCTTCAACCTATTCCACTATTGGTCTGGGAAATAGGACATAC
1 AATCTTCAACCTATTCCGCTGCTGGTCAGGGAAATAGGACATAC
* * * *
36224057 AATCTTCAACCTATTCCACTGCTGGTCTGGGAAATAGGACTTGC
1 AATCTTCAACCTATTCCGCTGCTGGTCAGGGAAATAGGACATAC
36224101 AATCTTC
1 AATCTTC
36224108 TACCGGCTTC
Statistics
Matches: 279, Mismatches: 32, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
42 1 0.00
44 278 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (44 bp):
AATCTTCAACCTATTCCGCTGCTGGTCAGGGAAATAGGACATAC
Found at i:36224107 original size:132 final size:132
Alignment explanation
Indices: 36223749--36224107 Score: 484
Period size: 132 Copynumber: 2.7 Consensus size: 132
36223739 TATAGAGACT
* * * * **
36223749 AATCTTCCACCTATTCCGCTGTTGGTCAGGGAGATAGGACTTGTAATCTTCAACCTATTCCGCTG
1 AATCTTCAACCTATTCCGCTGTTGGTCTGGGAAATAGGACATACAATCTTCAACCTATTCCGCTG
* * * * *
36223814 CTAGTCAGGGATATAGGACTTGCAATCCTCAACCTATTCCGCTGCTGGTCTGAGAAATAGGACAT
66 CTGGTCTGGGAAATAGGACTTGCAATCTTCAACCTATTCCGCTACTGGTCTGAGAAATAGGACAT
36223879 AC
131 AC
* * * * *
36223881 AATCTTCAACCTATTCCGCTGCTGGTCTAGGAAATAGGACATTCAATCTTCAACCTATTTCGCTC
1 AATCTTCAACCTATTCCGCTGTTGGTCTGGGAAATAGGACATACAATCTTCAACCTATTCCGCTG
* * * * * * *
36223946 CTGGTATGGGAAATAGGGCATACAGTCTTCAACCTATTCCGCTACTGGTCTGGGAAATAGGGCAT
66 CTGGTCTGGGAAATAGGACTTGCAATCTTCAACCTATTCCGCTACTGGTCTGAGAAATAGGACAT
36224011 AC
131 AC
* * *
36224013 AATCTTCAACCTATTCCACTATTGGTCTGGGAAATAGGACATACAATCTTCAACCTATTCCACTG
1 AATCTTCAACCTATTCCGCTGTTGGTCTGGGAAATAGGACATACAATCTTCAACCTATTCCGCTG
36224078 CTGGTCTGGGAAATAGGACTTGCAATCTTC
66 CTGGTCTGGGAAATAGGACTTGCAATCTTC
36224108 TACCGGCTTC
Statistics
Matches: 192, Mismatches: 35, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
132 192 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (132 bp):
AATCTTCAACCTATTCCGCTGTTGGTCTGGGAAATAGGACATACAATCTTCAACCTATTCCGCTG
CTGGTCTGGGAAATAGGACTTGCAATCTTCAACCTATTCCGCTACTGGTCTGAGAAATAGGACAT
AC
Found at i:36225247 original size:42 final size:42
Alignment explanation
Indices: 36225180--36225272 Score: 159
Period size: 42 Copynumber: 2.2 Consensus size: 42
36225170 GGTATAACAA
*
36225180 GATCACCACATGCCCCAATTCAGTCAAAATTCAAGTCGTCCT
1 GATCACCTCATGCCCCAATTCAGTCAAAATTCAAGTCGTCCT
* *
36225222 GATCCCCTCATGCCCCAATTCAGTCAAAATTCAAGTCGTTCT
1 GATCACCTCATGCCCCAATTCAGTCAAAATTCAAGTCGTCCT
36225264 GATCACCTC
1 GATCACCTC
36225273 GCACCCCCTT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.28, C:0.34, G:0.12, T:0.26
Consensus pattern (42 bp):
GATCACCTCATGCCCCAATTCAGTCAAAATTCAAGTCGTCCT
Found at i:36237944 original size:22 final size:22
Alignment explanation
Indices: 36237918--36237960 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
36237908 GGGTTAGGTT
36237918 AATTGGGTTTAGCATTTGGGCC
1 AATTGGGTTTAGCATTTGGGCC
*
36237940 AATTGGGTTTAGTATTTGGGC
1 AATTGGGTTTAGCATTTGGGC
36237961 TTGGGGTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.19, C:0.09, G:0.33, T:0.40
Consensus pattern (22 bp):
AATTGGGTTTAGCATTTGGGCC
Found at i:36244767 original size:18 final size:19
Alignment explanation
Indices: 36244744--36244780 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
36244734 AATTCTTTTA
36244744 AATTTTTTCAAA-AAAAAG
1 AATTTTTTCAAATAAAAAG
*
36244762 AATTTTTTTAAATAAAAAG
1 AATTTTTTCAAATAAAAAG
36244781 CAGAAAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (19 bp):
AATTTTTTCAAATAAAAAG
Found at i:36253253 original size:21 final size:20
Alignment explanation
Indices: 36253228--36253270 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
36253218 ACTAAAACAG
*
36253228 AATGAGTAAAGGAAACAAAAA
1 AATGAATAAA-GAAACAAAAA
*
36253249 AATGAATAAATAAACAAAAA
1 AATGAATAAAGAAACAAAAA
36253269 AA
1 AA
36253271 CGAGATTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.72, C:0.05, G:0.12, T:0.12
Consensus pattern (20 bp):
AATGAATAAAGAAACAAAAA
Found at i:36254385 original size:15 final size:15
Alignment explanation
Indices: 36254365--36254393 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
36254355 ATCCTTAAGG
36254365 TTTTTTT-CTTTTAA
1 TTTTTTTCCTTTTAA
36254379 TTTTTTTCCTTTTAA
1 TTTTTTTCCTTTTAA
36254394 GTAGCGAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTTTTCCTTTTAA
Found at i:36256141 original size:24 final size:24
Alignment explanation
Indices: 36256118--36256421 Score: 279
Period size: 24 Copynumber: 12.7 Consensus size: 24
36256108 TAGATATCTA
* *
36256118 GTGATAGAGGTTCGCATGTGTCTA
1 GTGATAGGGGTTCGCATGTGTCTG
* *
36256142 GTGATAGGGGTTCGTAGGGTGTCTG
1 GTGATAGGGGTTCGCA-TGTGTCTG
* * * * *
36256167 GTGATAGGGTTTCGTAGGTATTTG
1 GTGATAGGGGTTCGCATGTGTCTG
*
36256191 GTGATAGGGGTTCACATGTGTCTG
1 GTGATAGGGGTTCGCATGTGTCTG
*
36256215 GTGATAGGGGTAT-GCATGTGTTTG
1 GTGATAGGGGT-TCGCATGTGTCTG
* * * * * * *
36256239 GTGGTAGTGGTTCGTAGGTATTTA
1 GTGATAGGGGTTCGCATGTGTCTG
* *
36256263 GTGATA-GGGTTCGTATGTATCTG
1 GTGATAGGGGTTCGCATGTGTCTG
* * ** *
36256286 ATGATAGGGGTTTGCAAATGTCTA
1 GTGATAGGGGTTCGCATGTGTCTG
* *
36256310 GTGATAGGGGTTCGCAGGTATCTG
1 GTGATAGGGGTTCGCATGTGTCTG
*
36256334 GTGATAGAGGTTCGCATGTGTCTG
1 GTGATAGGGGTTCGCATGTGTCTG
* * *
36256358 GTGATAGGGGTTCGCAGGTATGTG
1 GTGATAGGGGTTCGCATGTGTCTG
*
36256382 GTGATAGGTGTTCGCATGTGTCTG
1 GTGATAGGGGTTCGCATGTGTCTG
*
36256406 GTGATAGGAGTTCGCA
1 GTGATAGGGGTTCGCA
36256422 AGTTACATGC
Statistics
Matches: 225, Mismatches: 51, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
23 19 0.08
24 184 0.82
25 22 0.10
ACGTcount: A:0.18, C:0.09, G:0.38, T:0.35
Consensus pattern (24 bp):
GTGATAGGGGTTCGCATGTGTCTG
Found at i:36256334 original size:119 final size:120
Alignment explanation
Indices: 36256191--36256422 Score: 306
Period size: 119 Copynumber: 1.9 Consensus size: 120
36256181 TAGGTATTTG
* * * * * * *
36256191 GTGATAGGGGTTCACATGTGTCTGGTGATAGGGGTAT-GCATGTGTTTGGTGGTAGTGGTTCGTA
1 GTGATAGGGGTTCACAGGTATCTGGTGATAGAGGT-TCGCATGTGTCTGGTGATAGGGGTTCGCA
* * * *
36256255 GGTATTTAGTGATAGG-GTTCGTATGTATCTGATGATAGGGGTTTGCAAATGTCTA
65 GGTATGTAGTGATAGGTGTTCGCATGTATCTGATGATAGGAGTTCGCAAATGTCTA
*
36256310 GTGATAGGGGTTCGCAGGTATCTGGTGATAGAGGTTCGCATGTGTCTGGTGATAGGGGTTCGCAG
1 GTGATAGGGGTTCACAGGTATCTGGTGATAGAGGTTCGCATGTGTCTGGTGATAGGGGTTCGCAG
* * *
36256375 GTATGTGGTGATAGGTGTTCGCATGTGTCTGGTGATAGGAGTTCGCAA
66 GTATGTAGTGATAGGTGTTCGCATGTATCTGATGATAGGAGTTCGCAA
36256423 GTTACATGCT
Statistics
Matches: 96, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
118 1 0.01
119 68 0.71
120 27 0.28
ACGTcount: A:0.19, C:0.09, G:0.38, T:0.34
Consensus pattern (120 bp):
GTGATAGGGGTTCACAGGTATCTGGTGATAGAGGTTCGCATGTGTCTGGTGATAGGGGTTCGCAG
GTATGTAGTGATAGGTGTTCGCATGTATCTGATGATAGGAGTTCGCAAATGTCTA
Found at i:36256386 original size:72 final size:71
Alignment explanation
Indices: 36256098--36256421 Score: 335
Period size: 72 Copynumber: 4.5 Consensus size: 71
36256088 GGGTTCGCCT
* * * * *
36256098 TAGGGGTTTGTAGATATCTAGTGATAGAGGTTCGCATGTGTCTAGTGATAGGGGTTCGTAGGGTG
1 TAGGGGTTCGTAGGTATCTGGTGATAG-GGTTCGCATGTGTCTGGTGATAGGGGTTCGCA-GGTG
36256163 TCTGGTGA
64 TCTGGTGA
* * * *
36256171 TAGGGTTTCGTAGGTATTTGGTGATAGGGGTTCACATGTGTCTGGTGATAGGGGTAT-GCATGTG
1 TAGGGGTTCGTAGGTATCTGGTGATA-GGGTTCGCATGTGTCTGGTGATAGGGGT-TCGCAGGTG
* *
36256235 TTTGGTGG
64 TCTGGTGA
* * * * * * * **
36256243 TAGTGGTTCGTAGGTATTTAGTGATAGGGTTCGTATGTATCTGATGATAGGGGTTTGCAAATGTC
1 TAGGGGTTCGTAGGTATCTGGTGATAGGGTTCGCATGTGTCTGGTGATAGGGGTTCGCAGGTGTC
*
36256308 TAGTGA
66 TGGTGA
* *
36256314 TAGGGGTTCGCAGGTATCTGGTGATAGAGGTTCGCATGTGTCTGGTGATAGGGGTTCGCAGGTAT
1 TAGGGGTTCGTAGGTATCTGGTGATAG-GGTTCGCATGTGTCTGGTGATAGGGGTTCGCAGGTGT
*
36256379 GTGGTGA
65 CTGGTGA
* * * *
36256386 TAGGTGTTCGCATGTGTCTGGTGATAGGAGTTCGCA
1 TAGGGGTTCGTAGGTATCTGGTGATAGG-GTTCGCA
36256422 AGTTACATGC
Statistics
Matches: 207, Mismatches: 39, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
70 1 0.00
71 58 0.28
72 98 0.47
73 48 0.23
74 2 0.01
ACGTcount: A:0.18, C:0.09, G:0.38, T:0.35
Consensus pattern (71 bp):
TAGGGGTTCGTAGGTATCTGGTGATAGGGTTCGCATGTGTCTGGTGATAGGGGTTCGCAGGTGTC
TGGTGA
Found at i:36257074 original size:23 final size:23
Alignment explanation
Indices: 36257050--36257122 Score: 67
Period size: 23 Copynumber: 3.2 Consensus size: 23
36257040 TGCTACTAGT
*
36257050 AGTTTATTCGCATATCTACTGGT
1 AGTTTATTCGCATATCTACTGGC
* * *
36257073 AGTTCA-TCTGCAAATCTATTGGC
1 AGTTTATTC-GCATATCTACTGGC
* * *
36257096 GGTTTATCCACATATCTACTGGC
1 AGTTTATTCGCATATCTACTGGC
36257119 AGTT
1 AGTT
36257123 CATCTGTAAA
Statistics
Matches: 37, Mismatches: 11, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
22 2 0.05
23 34 0.92
24 1 0.03
ACGTcount: A:0.23, C:0.21, G:0.18, T:0.38
Consensus pattern (23 bp):
AGTTTATTCGCATATCTACTGGC
Found at i:36257156 original size:46 final size:46
Alignment explanation
Indices: 36257042--36257163 Score: 127
Period size: 46 Copynumber: 2.7 Consensus size: 46
36257032 GAAAGAAGTG
* * *
36257042 CTACTAGTAGTTTATTCGCATATCTACTGGTAGTTCATCTGCAAAT
1 CTACTAGCAATTTATTCGCATATCTACTGGCAGTTCATCTGCAAAT
* * ** * * *
36257088 CTATTGGCGGTTTATCCACATATCTACTGGCAGTTCATCTGTAAAT
1 CTACTAGCAATTTATTCGCATATCTACTGGCAGTTCATCTGCAAAT
* * *
36257134 TTACTATCAATTTTTTCGCATATCTACTGG
1 CTACTAGCAATTTATTCGCATATCTACTGG
36257164 TGGTATATCT
Statistics
Matches: 59, Mismatches: 17, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
46 59 1.00
ACGTcount: A:0.25, C:0.20, G:0.15, T:0.40
Consensus pattern (46 bp):
CTACTAGCAATTTATTCGCATATCTACTGGCAGTTCATCTGCAAAT
Found at i:36265016 original size:41 final size:42
Alignment explanation
Indices: 36264958--36265061 Score: 131
Period size: 41 Copynumber: 2.5 Consensus size: 42
36264948 GGCTTTTAGC
* * * * * *
36264958 CTGCTAGACTTATAGTCTGAATTGTTTCACTGGCAT-TAAGT
1 CTGCTAGACATAAAGTCTGAAATCTTTCACCGGCATCAAAGT
36264999 CTGCTAGACATAAAGTCTGAAATCTTTCACCGGCATCAAAGT
1 CTGCTAGACATAAAGTCTGAAATCTTTCACCGGCATCAAAGT
*
36265041 -TGCTAGACGTAAAGTCTGAAA
1 CTGCTAGACATAAAGTCTGAAA
36265062 CATTCGATCA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 51 0.93
42 4 0.07
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (42 bp):
CTGCTAGACATAAAGTCTGAAATCTTTCACCGGCATCAAAGT
Found at i:36266670 original size:13 final size:13
Alignment explanation
Indices: 36266652--36266677 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36266642 CAATCAAATG
36266652 CACACAAAATAAT
1 CACACAAAATAAT
36266665 CACACAAAATAAT
1 CACACAAAATAAT
36266678 ATTAATAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15
Consensus pattern (13 bp):
CACACAAAATAAT
Found at i:36274246 original size:29 final size:29
Alignment explanation
Indices: 36274214--36274275 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
36274204 ATGCACCGGT
*
36274214 GTGCAATAGCAAAACA-AAGTAGCACTGAA
1 GTGCAATAGCAAAACATAA-TAGCACTAAA
* * *
36274243 GTGCAGTATCATAACATAATAGCACTAAA
1 GTGCAATAGCAAAACATAATAGCACTAAA
36274272 GTGC
1 GTGC
36274276 TTTAGCGGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 26 0.93
30 2 0.07
ACGTcount: A:0.44, C:0.18, G:0.19, T:0.19
Consensus pattern (29 bp):
GTGCAATAGCAAAACATAATAGCACTAAA
Found at i:36278070 original size:22 final size:22
Alignment explanation
Indices: 36278034--36278107 Score: 96
Period size: 22 Copynumber: 3.4 Consensus size: 22
36278024 CATCAGTGTT
36278034 ATCAGTGGC-CTTTTATCTGCAA
1 ATCAGTGGCAC-TTTATCTGCAA
* *
36278056 ATTAGTGGCAGTTTATCTGCAA
1 ATCAGTGGCACTTTATCTGCAA
* *
36278078 ATCAGTAGCACTTTTTCTGCAA
1 ATCAGTGGCACTTTATCTGCAA
36278100 ATCAGTGG
1 ATCAGTGG
36278108 TGGCTTGTCT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.26, C:0.19, G:0.20, T:0.35
Consensus pattern (22 bp):
ATCAGTGGCACTTTATCTGCAA
Found at i:36292595 original size:3 final size:3
Alignment explanation
Indices: 36292581--36292690 Score: 143
Period size: 3 Copynumber: 36.3 Consensus size: 3
36292571 GCTGGGCAGT
* *
36292581 AGA AGA AAA AGA AGA AAA AGA AGA AGAA AGA AGA AGAA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AG-A AGA AGA AG-A AGA AGA AGA
* *
36292628 A-A AAA AGA AGA AGA AGA AGA AGAA AGA AGA AGA A-A AAA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AG-A AGA AGA AGA AGA AGA AGA AGA
36292672 AGA AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA A
36292691 AAAAATGGAG
Statistics
Matches: 96, Mismatches: 6, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
2 4 0.04
3 83 0.86
4 9 0.09
ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:36292645 original size:33 final size:33
Alignment explanation
Indices: 36292581--36292695 Score: 186
Period size: 33 Copynumber: 3.6 Consensus size: 33
36292571 GCTGGGCAGT
36292581 AGAAGAAA-AAGAAG--AAAAAGAAGAAGAAAGA
1 AGAAGAAAGAAGAAGAAAAAAAGAAGAAG-AAGA
36292612 AGAAGAAAGAAGAAGAAAAAAAGAAGAAGAAGA
1 AGAAGAAAGAAGAAGAAAAAAAGAAGAAGAAGA
36292645 AGAAGAAAGAAGAAGAAAAAAAGAAGAAGAAGA
1 AGAAGAAAGAAGAAGAAAAAAAGAAGAAGAAGA
36292678 AGAAG-AAGAAGAA-AAAAA
1 AGAAGAAAGAAGAAGAAAAA
36292696 TGGAGATGTC
Statistics
Matches: 81, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
31 13 0.16
32 14 0.17
33 42 0.52
34 12 0.15
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (33 bp):
AGAAGAAAGAAGAAGAAAAAAAGAAGAAGAAGA
Found at i:36293021 original size:47 final size:47
Alignment explanation
Indices: 36292967--36293065 Score: 144
Period size: 47 Copynumber: 2.1 Consensus size: 47
36292957 GTTATTTGTA
* *
36292967 ATATTGTTGTTTTTGTTTAAATGAAAAACCAGCTTATGTGATAGTTG
1 ATATTGTTGTTGTTGTTAAAATGAAAAACCAGCTTATGTGATAGTTG
* * * *
36293014 GTATTGTTGTTGTTGTTAAAATGGAAAATCAGCTTATGTGATTGTTG
1 ATATTGTTGTTGTTGTTAAAATGAAAAACCAGCTTATGTGATAGTTG
36293061 ATATT
1 ATATT
36293066 AGGGTTGTTG
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.28, C:0.05, G:0.21, T:0.45
Consensus pattern (47 bp):
ATATTGTTGTTGTTGTTAAAATGAAAAACCAGCTTATGTGATAGTTG
Found at i:36293027 original size:44 final size:44
Alignment explanation
Indices: 36292973--36293095 Score: 131
Period size: 47 Copynumber: 2.7 Consensus size: 44
36292963 TGTAATATTG
* * *
36292973 TTGTTTTTGTTTAAATGAAAAACCAGCTTATGTGATAGTTGGTA
1 TTGTTGTTGTTTAAATGGAAAACCAGCTTATGTGATAGTTGATA
* *
36293017 TTGTTGTTGTTGTTAAAATGGAAAATCAGCTTATGTGATTGTTGATA
1 TTGTTGTTG-T-TT-AAATGGAAAACCAGCTTATGTGATAGTTGATA
* * *
36293064 TTAG-GGTTGTTGAAATGGAAAACTAGCTTATG
1 TT-GTTGTTGTTTAAATGGAAAACCAGCTTATG
36293096 GTGTTGTTAT
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
44 26 0.39
45 2 0.03
46 3 0.05
47 34 0.52
48 1 0.02
ACGTcount: A:0.29, C:0.06, G:0.24, T:0.41
Consensus pattern (44 bp):
TTGTTGTTGTTTAAATGGAAAACCAGCTTATGTGATAGTTGATA
Found at i:36293073 original size:47 final size:45
Alignment explanation
Indices: 36292967--36293103 Score: 129
Period size: 47 Copynumber: 3.0 Consensus size: 45
36292957 GTTATTTGTA
* * * *
36292967 ATATTGTTGTTTTTGTTTAAATGAAAAACCAGCTTATGTGATAGTTG
1 ATATTGTGGTTGTTG-TTAAATGGAAAA-CAGCTTATGTGATTGTTG
* *
36293014 GTATTGTTGTTGTTGTTAAAATGGAAAATCAGCTTATGTGATTGTTG
1 ATATTGTGGTTGTTGTT-AAATGGAAAA-CAGCTTATGTGATTGTTG
36293061 ATATTAG-GGTTGTTG--AAATGGAAAACTAGCTTATGGTG-TTGTT
1 ATATT-GTGGTTGTTGTTAAATGGAAAAC-AGCTTAT-GTGATTGTT
36293104 ATTTAGTTTT
Statistics
Matches: 79, Mismatches: 7, Indels: 11
0.81 0.07 0.11
Matches are distributed among these distances:
43 1 0.01
44 22 0.28
45 3 0.04
46 2 0.03
47 50 0.63
48 1 0.01
ACGTcount: A:0.28, C:0.05, G:0.24, T:0.43
Consensus pattern (45 bp):
ATATTGTGGTTGTTGTTAAATGGAAAACAGCTTATGTGATTGTTG
Found at i:36297303 original size:14 final size:15
Alignment explanation
Indices: 36297274--36297305 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
36297264 AAAAACATCA
36297274 TAATTTTATCTATTT
1 TAATTTTATCTATTT
36297289 TAATTTTAT-TATTT
1 TAATTTTATCTATTT
36297303 TAA
1 TAA
36297306 CTATAACCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (15 bp):
TAATTTTATCTATTT
Found at i:36300487 original size:17 final size:17
Alignment explanation
Indices: 36300465--36300506 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
36300455 AATTCGTTTG
36300465 TTTATTGTTC-TTATTTA
1 TTTATT-TTCATTATTTA
*
36300482 TTTATTTTCATTCTTTA
1 TTTATTTTCATTATTTA
36300499 TTTATTTT
1 TTTATTTT
36300507 TATCCTCTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 3 0.13
17 20 0.87
ACGTcount: A:0.17, C:0.07, G:0.02, T:0.74
Consensus pattern (17 bp):
TTTATTTTCATTATTTA
Found at i:36301022 original size:21 final size:21
Alignment explanation
Indices: 36300982--36301023 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
36300972 TGGGGTAACT
* * *
36300982 GCTTCTTGGTGGGTTGGGGCA
1 GCTTCTTGATGAGTTAGGGCA
36301003 GCTTCTTGATGAGTTAGGGCA
1 GCTTCTTGATGAGTTAGGGCA
36301024 ACCACTTGGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.14, G:0.40, T:0.33
Consensus pattern (21 bp):
GCTTCTTGATGAGTTAGGGCA
Found at i:36307456 original size:15 final size:15
Alignment explanation
Indices: 36307436--36307466 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
36307426 CCTCAAACAA
36307436 GAACGAAAATTATAT
1 GAACGAAAATTATAT
36307451 GAACGAAAATTATAT
1 GAACGAAAATTATAT
36307466 G
1 G
36307467 TCATTGAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.06, G:0.16, T:0.26
Consensus pattern (15 bp):
GAACGAAAATTATAT
Found at i:36315885 original size:27 final size:27
Alignment explanation
Indices: 36315854--36315911 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
36315844 TTATTTTAAA
36315854 AATTTTAGAAAATTTTT-TAATTTTAT
1 AATTTTAGAAAATTTTTATAATTTTAT
* * *
36315880 ATATTTTTGGAACTTTTTATAA-TTTAT
1 A-ATTTTAGAAAATTTTTATAATTTTAT
36315907 AATTT
1 AATTT
36315912 ATATAATATT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
26 5 0.19
27 19 0.70
28 3 0.11
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (27 bp):
AATTTTAGAAAATTTTTATAATTTTAT
Found at i:36328110 original size:3 final size:3
Alignment explanation
Indices: 36328102--36328154 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
36328092 TCTCTAATAT
36328102 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
36328150 TTA TT
1 TTA TT
36328155 TTTTGATTCT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:36335133 original size:41 final size:40
Alignment explanation
Indices: 36335017--36335133 Score: 123
Period size: 37 Copynumber: 3.0 Consensus size: 40
36335007 CTTCATCGGG
* *
36335017 TAATTCGAAGTAATAAATTGACACCTAGTGTCTCATC-AGC
1 TAATCCGAAGTAAT-AATTGACACCTAGTGTCTCATCGAAC
* * * *
36335057 TAAACCGAAGT-A-AATTGGCACCTAGTGCCTCATCGAAT
1 TAATCCGAAGTAATAATTGACACCTAGTGTCTCATCGAAC
* *
36335095 TAATCCGAAGTAAATAATTGACACCCAGTGTCTTATCGA
1 TAATCCGAAGT-AATAATTGACACCTAGTGTCTCATCGA
36335134 CTCGAAGTCG
Statistics
Matches: 62, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
37 20 0.32
38 11 0.18
39 1 0.02
40 10 0.16
41 20 0.32
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.27
Consensus pattern (40 bp):
TAATCCGAAGTAATAATTGACACCTAGTGTCTCATCGAAC
Found at i:36335701 original size:18 final size:19
Alignment explanation
Indices: 36335675--36335710 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
36335665 TAAACTAAAT
*
36335675 TTAACTCCCT-AATTTCAC
1 TTAAATCCCTAAATTTCAC
36335693 TTAAATCCCTAAATTTCA
1 TTAAATCCCTAAATTTCA
36335711 AAATTTTTGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.33, C:0.28, G:0.00, T:0.39
Consensus pattern (19 bp):
TTAAATCCCTAAATTTCAC
Found at i:36336032 original size:26 final size:26
Alignment explanation
Indices: 36335992--36336042 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
36335982 TTCCTTTCTT
* *
36335992 TCCCTTTTTCTTTTCT-TTCTTTTTTC
1 TCCCTGTTTCGTTTCTATT-TTTTTTC
36336018 TCCCTGTTTCGTTTCTATTTTTTTT
1 TCCCTGTTTCGTTTCTATTTTTTTT
36336043 GTTTCTTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.02, C:0.24, G:0.04, T:0.71
Consensus pattern (26 bp):
TCCCTGTTTCGTTTCTATTTTTTTTC
Found at i:36336098 original size:30 final size:31
Alignment explanation
Indices: 36336058--36336136 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 31
36336048 TTTTATTTAT
*
36336058 TATATTTACTTATTATAATATATA-ATATAA
1 TATATATACTTATTATAATATATAGATATAA
*
36336088 TATATATACTTA--ATAAT-TA-AGATGTAA
1 TATATATACTTATTATAATATATAGATATAA
*
36336115 TAT-TATA-ATATTATAATATATA
1 TATATATACTTATTATAATATATA
36336137 TTTTAACTTT
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
25 2 0.05
26 5 0.12
27 15 0.37
28 7 0.17
29 1 0.02
30 11 0.27
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.47
Consensus pattern (31 bp):
TATATATACTTATTATAATATATAGATATAA
Found at i:36344604 original size:60 final size:60
Alignment explanation
Indices: 36344534--36344653 Score: 222
Period size: 60 Copynumber: 2.0 Consensus size: 60
36344524 TCAGAAAGAG
36344534 ACAGAACCTACCGAAGAAATAACGACCAAATGCAATAATGAATTAAGAGTTGGAGTCATT
1 ACAGAACCTACCGAAGAAATAACGACCAAATGCAATAATGAATTAAGAGTTGGAGTCATT
* *
36344594 ACAGAACCTACCGAGGAAATAACGACCAAATGCAATAATGAATTAAGTGTTGGAGTCATT
1 ACAGAACCTACCGAAGAAATAACGACCAAATGCAATAATGAATTAAGAGTTGGAGTCATT
36344654 CCTTTAGCAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.43, C:0.17, G:0.19, T:0.21
Consensus pattern (60 bp):
ACAGAACCTACCGAAGAAATAACGACCAAATGCAATAATGAATTAAGAGTTGGAGTCATT
Found at i:36346542 original size:13 final size:14
Alignment explanation
Indices: 36346524--36346552 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
36346514 ACCTATTAAC
36346524 ATCAA-CATTCAAA
1 ATCAACCATTCAAA
36346537 ATCAACCATTCAAA
1 ATCAACCATTCAAA
36346551 AT
1 AT
36346553 ACATTTACCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.33
14 10 0.67
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (14 bp):
ATCAACCATTCAAA
Found at i:36347239 original size:44 final size:44
Alignment explanation
Indices: 36347181--36347302 Score: 156
Period size: 44 Copynumber: 2.8 Consensus size: 44
36347171 CATAGTATTG
*
36347181 CAACACCGGTACATAGTACCTGCTGAATATAAATGGCACATAGC
1 CAACACCGGTACATAGTACCTGCTGAATATAAATGACACATAGC
* * * * * *
36347225 CAACATCGGCACATAGTACCTACAGGATATAAGTGACACATAGC
1 CAACACCGGTACATAGTACCTGCTGAATATAAATGACACATAGC
*
36347269 CAGCACCGGTACATAGTACCTGCT-ACATATAAAT
1 CAACACCGGTACATAGTACCTGCTGA-ATATAAAT
36347303 CCTAATGACA
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
44 63 1.00
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.20
Consensus pattern (44 bp):
CAACACCGGTACATAGTACCTGCTGAATATAAATGACACATAGC
Done.