Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 110 of 145
Found at i:36961292 original size:27 final size:27
Alignment explanation
Indices: 36961262--36961412 Score: 130
Period size: 27 Copynumber: 5.6 Consensus size: 27
36961252 CCTTGAAGGT
36961262 TAAAATGACCGAAATAACCTCGATGGG
1 TAAAATGACCGAAATAACCTCGATGGG
*
36961289 TAAAATGACCGAAAT-ACTCTTGATGGG
1 TAAAATGACCGAAATAAC-CTCGATGGG
* *
36961316 TAAAATGATCGAAATACCCTCGATGGG
1 TAAAATGACCGAAATAACCTCGATGGG
* * * * *
36961343 TACAATGACTGACAT--GCTCCCATAGGG
1 TAAAATGACCGAAATAACCT-CGAT-GGG
* * *
36961370 TAAAATGACCGAAATACCCCCG-TAAGG
1 TAAAATGACCGAAATAACCTCGAT-GGG
*
36961397 TAAAATGACCGTAATA
1 TAAAATGACCGAAATA
36961413 CCCCTGTAGG
Statistics
Matches: 100, Mismatches: 18, Indels: 12
0.77 0.14 0.09
Matches are distributed among these distances:
25 2 0.02
26 5 0.05
27 90 0.90
28 2 0.02
29 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (27 bp):
TAAAATGACCGAAATAACCTCGATGGG
Found at i:36961311 original size:54 final size:55
Alignment explanation
Indices: 36961245--36961577 Score: 233
Period size: 54 Copynumber: 6.2 Consensus size: 55
36961235 TATCTGGACT
* * *
36961245 GAAATACCCTTGAAGGTTAAAATGACCGAAATAACCTCGAT-GGGTAAAATGACC
1 GAAATACCCTTGAAGGGTAAAATGACCGAAATACCCCCGATAGGGTAAAATGACC
* * * * * *
36961299 GAAATACTCTTGATGGGTAAAATGATCGAAATACCCTCGAT-GGGTACAATGACT
1 GAAATACCCTTGAAGGGTAAAATGACCGAAATACCCCCGATAGGGTAAAATGACC
* * * *
36961353 GACATGCTCC--CATAGGGTAAAATGACCGAAATACCCCCG-TAAGGTAAAATGACC
1 GAAATAC-CCTTGA-AGGGTAAAATGACCGAAATACCCCCGATAGGGTAAAATGACC
* * * * * * *
36961407 GTAATACCCCTGTAGGGTAAAATGACTGTAAT-GCCCCTATAGGGTAAAATGACC
1 GAAATACCCTTGAAGGGTAAAATGACCGAAATACCCCCGATAGGGTAAAATGACC
* * * * * *
36961461 GTAATGCCCTTGTAGGGTAAAATGACAG-TAT-CGCCCTTG-TAGGGTAAAATGACC
1 GAAATACCCTTGAAGGGTAAAATGACCGAAATAC-CCC-CGATAGGGTAAAATGACC
** * * *
36961515 GTCATACCCCTT--AGGGTAAAATGACCGTAATGCCCCTC--TAGGGTAAAATAACC
1 GAAATA-CCCTTGAAGGGTAAAATGACCGAAATACCCC-CGATAGGGTAAAATGACC
*
36961568 GTAATACCCT
1 GAAATACCCT
36961578 GGTGGGTAAA
Statistics
Matches: 227, Mismatches: 41, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
52 4 0.02
53 43 0.19
54 173 0.76
55 7 0.03
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (55 bp):
GAAATACCCTTGAAGGGTAAAATGACCGAAATACCCCCGATAGGGTAAAATGACC
Found at i:36961380 original size:81 final size:81
Alignment explanation
Indices: 36961286--36961576 Score: 283
Period size: 81 Copynumber: 3.6 Consensus size: 81
36961276 TAACCTCGAT
* * *
36961286 GGGTAAAATGACCGAAATACTCTTG-ATGGGTAAAATGATCGAAATA-CCCTCG-ATGGGTACAA
1 GGGTAAAATGACCGAAATACCCTTGTA-GGGTAAAATGACCGAAATACCCCT-GTA-GGGTAAAA
36961348 TGACTG-ACATGCTCCC-ATA
63 TGACTGTA-ATGC-CCCTATA
** * *
36961367 GGGTAAAATGACCGAAATACCCCCGTAAGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGA
1 GGGTAAAATGACCGAAATACCCTTGTAGGGTAAAATGACCGAAATACCCCTGTAGGGTAAAATGA
36961432 CTGTAATGCCCCTATA
66 CTGTAATGCCCCTATA
* * * *
36961448 GGGTAAAATGACCGTAATGCCCTTGTAGGGTAAAATGACAG-TAT-CGCCCTTGTAGGGTAAAAT
1 GGGTAAAATGACCGAAATACCCTTGTAGGGTAAAATGACCGAAATAC-CCC-TGTAGGGTAAAAT
* * *
36961511 GACCGTCATACCCCT-TA
64 GACTGTAATGCCCCTATA
* * * * * *
36961528 GGGTAAAATGACCGTAATGCCCCTCTAGGGTAAAATAACCGTAATACCC
1 GGGTAAAATGACCGAAATACCCTTGTAGGGTAAAATGACCGAAATACCC
36961577 TGGTGGGTAA
Statistics
Matches: 179, Mismatches: 22, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
79 1 0.01
80 47 0.26
81 123 0.69
82 8 0.04
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.23
Consensus pattern (81 bp):
GGGTAAAATGACCGAAATACCCTTGTAGGGTAAAATGACCGAAATACCCCTGTAGGGTAAAATGA
CTGTAATGCCCCTATA
Found at i:36961413 original size:27 final size:27
Alignment explanation
Indices: 36961365--36961576 Score: 268
Period size: 27 Copynumber: 7.9 Consensus size: 27
36961355 CATGCTCCCA
* *
36961365 TAGGGTAAAATGACCGAAATACCCCCG
1 TAGGGTAAAATGACCGTAATACCCCTG
*
36961392 TAAGGTAAAATGACCGTAATACCCCTG
1 TAGGGTAAAATGACCGTAATACCCCTG
* * *
36961419 TAGGGTAAAATGACTGTAATGCCCCTA
1 TAGGGTAAAATGACCGTAATACCCCTG
* *
36961446 TAGGGTAAAATGACCGTAATGCCCTTG
1 TAGGGTAAAATGACCGTAATACCCCTG
*
36961473 TAGGGTAAAATGACAGT-AT-CGCCCTTG
1 TAGGGTAAAATGACCGTAATAC-CCC-TG
*
36961500 TAGGGTAAAATGACCGTCATACCCCT-
1 TAGGGTAAAATGACCGTAATACCCCTG
* *
36961526 TAGGGTAAAATGACCGTAATGCCCCTC
1 TAGGGTAAAATGACCGTAATACCCCTG
*
36961553 TAGGGTAAAATAACCGTAATACCC
1 TAGGGTAAAATGACCGTAATACCC
36961577 TGGTGGGTAA
Statistics
Matches: 163, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
25 1 0.01
26 28 0.17
27 128 0.79
28 5 0.03
29 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.23
Consensus pattern (27 bp):
TAGGGTAAAATGACCGTAATACCCCTG
Found at i:36961664 original size:24 final size:25
Alignment explanation
Indices: 36961637--36961683 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
36961627 ATGTGGTTAA
*
36961637 ATGACTAATTTTTCTGTG-TTTGGT
1 ATGACTAATTTGTCTGTGATTTGGT
*
36961661 ATGACTGATTTGTCTGTGATTTG
1 ATGACTAATTTGTCTGTGATTTG
36961684 AATACTGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.17, C:0.09, G:0.23, T:0.51
Consensus pattern (25 bp):
ATGACTAATTTGTCTGTGATTTGGT
Found at i:36961919 original size:32 final size:32
Alignment explanation
Indices: 36961865--36962133 Score: 251
Period size: 32 Copynumber: 8.5 Consensus size: 32
36961855 ACTACGATGC
* * *
36961865 TACTGATAGCTTTGTGCTGATCATAGTACCGT
1 TACTGATGGCTTTGTACCGATCATAGTACCGT
*
36961897 TACTAATGGCTTTGTACCGATCATAGTACCGT
1 TACTGATGGCTTTGTACCGATCATAGTACCGT
*
36961929 TACTGATGGCTTTGTACCGATCATATTACCGT
1 TACTGATGGCTTTGTACCGATCATAGTACCGT
* * *
36961961 TACTGATGGCTTTGTGCCAATCATATTACCGT
1 TACTGATGGCTTTGTACCGATCATAGTACCGT
* * * ** *
36961993 TACCGATGGCTGTGTACCAAT-ATTTTACTGT
1 TACTGATGGCTTTGTACCGATCATAGTACCGT
* * * *
36962024 TATTGATGGCTATGTACCGATCATA-TCACTGC
1 TACTGATGGCTTTGTACCGATCATAGT-ACCGT
* *
36962056 CACTGATGGCTTTGTGCCGATCAT-GTTACCGT
1 TACTGATGGCTTTGTACCGATCATAG-TACCGT
* ** * *
36962088 TACTGATGGCTATGTGTCGATCATA-TCACTGC
1 TACTGATGGCTTTGTACCGATCATAGT-ACCGT
36962120 TAC-GATGGCTTTGT
1 TACTGATGGCTTTGT
36962134 GCCAATCACA
Statistics
Matches: 200, Mismatches: 31, Indels: 13
0.82 0.13 0.05
Matches are distributed among these distances:
31 37 0.19
32 162 0.81
33 1 0.00
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (32 bp):
TACTGATGGCTTTGTACCGATCATAGTACCGT
Found at i:36961970 original size:64 final size:64
Alignment explanation
Indices: 36961863--36962161 Score: 300
Period size: 64 Copynumber: 4.7 Consensus size: 64
36961853 TTACTACGAT
* * * *
36961863 GCTACTGATAGCTTTGTGCTGATCATAGTACCGTTACTAATGGCTTTGTACCGATCATAGT-ACC
1 GCTACTGATGGCTTTGTGCCGATCATATTACCGTTACTGATGGCTTTGTACCGATCATA-TCACC
* * * * *
36961927 GTTACTGATGGCTTTGTACCGATCATATTACCGTTACTGATGGCTTTGTGCCAATCATATTACC
1 GCTACTGATGGCTTTGTGCCGATCATATTACCGTTACTGATGGCTTTGTACCGATCATATCACC
* * * * * * * * * *
36961991 GTTACCGATGGCTGTGTACCAAT-ATTTTACTGTTATTGATGGCTATGTACCGATCATATCACT
1 GCTACTGATGGCTTTGTGCCGATCATATTACCGTTACTGATGGCTTTGTACCGATCATATCACC
* * * ** *
36962054 GCCACTGATGGCTTTGTGCCGATCATGTTACCGTTACTGATGGCTATGTGTCGATCATATCACT
1 GCTACTGATGGCTTTGTGCCGATCATATTACCGTTACTGATGGCTTTGTACCGATCATATCACC
* * * *
36962118 GCTAC-GATGGCTTTGTGCCAATCACATTACTG-TACTTATGGCTT
1 GCTACTGATGGCTTTGTGCCGATCATATTACCGTTACTGATGGCTT
36962162 GTAGCCATTC
Statistics
Matches: 196, Mismatches: 37, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
62 10 0.05
63 73 0.37
64 113 0.58
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (64 bp):
GCTACTGATGGCTTTGTGCCGATCATATTACCGTTACTGATGGCTTTGTACCGATCATATCACC
Found at i:36962148 original size:127 final size:127
Alignment explanation
Indices: 36961902--36962150 Score: 322
Period size: 127 Copynumber: 2.0 Consensus size: 127
36961892 ACCGTTACTA
* **
36961902 ATGGCTTTGTACCGATCATAGTACCGTTACTGATGGCTTTGTACCGATCATATTACCGTTACTGA
1 ATGGCTATGTACCGATCATAGTACCGCCACTGATGGCTTTGTACCGATCATATTACCGTTACTGA
* * * **
36961967 TGGCTTTGTGCCAATCATATTACCGTTACCGATGGCTGTGTACCAATATTTTACTGTTATTG
66 TGGCTATGTGCCAATCATATCACCGCTACCGATGGCTGTGTACCAATACATTACTGTTATTG
* * *
36962029 ATGGCTATGTACCGATCATA-TCACTGCCACTGATGGCTTTGTGCCGATCATGTTACCGTTACTG
1 ATGGCTATGTACCGATCATAGT-ACCGCCACTGATGGCTTTGTACCGATCATATTACCGTTACTG
* * * * *
36962093 ATGGCTATGTGTCGATCATATCACTGCTA-CGATGGCTTTGTGCCAATCACATTACTGT
65 ATGGCTATGTGCCAATCATATCACCGCTACCGATGGCTGTGTACCAAT-ACATTACTGT
36962151 ACTTATGGCT
Statistics
Matches: 104, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
126 17 0.16
127 87 0.84
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (127 bp):
ATGGCTATGTACCGATCATAGTACCGCCACTGATGGCTTTGTACCGATCATATTACCGTTACTGA
TGGCTATGTGCCAATCATATCACCGCTACCGATGGCTGTGTACCAATACATTACTGTTATTG
Found at i:36965580 original size:42 final size:42
Alignment explanation
Indices: 36965521--36965691 Score: 342
Period size: 42 Copynumber: 4.1 Consensus size: 42
36965511 AATTGATGAA
36965521 GATACGGTGGTTCTCATGATCCAAATTCGGAACATCGTGTTC
1 GATACGGTGGTTCTCATGATCCAAATTCGGAACATCGTGTTC
36965563 GATACGGTGGTTCTCATGATCCAAATTCGGAACATCGTGTTC
1 GATACGGTGGTTCTCATGATCCAAATTCGGAACATCGTGTTC
36965605 GATACGGTGGTTCTCATGATCCAAATTCGGAACATCGTGTTC
1 GATACGGTGGTTCTCATGATCCAAATTCGGAACATCGTGTTC
36965647 GATACGGTGGTTCTCATGATCCAAATTCGGAACATCGTGTTC
1 GATACGGTGGTTCTCATGATCCAAATTCGGAACATCGTGTTC
36965689 GAT
1 GAT
36965692 CTCTTCCAAA
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 129 1.00
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (42 bp):
GATACGGTGGTTCTCATGATCCAAATTCGGAACATCGTGTTC
Found at i:36974952 original size:28 final size:28
Alignment explanation
Indices: 36974862--36974952 Score: 130
Period size: 28 Copynumber: 3.2 Consensus size: 28
36974852 ATACAGCATG
* * *
36974862 CAGTAACAGTCTGGGCCTTAGCCCGATA
1 CAGTAACTGTGTGGGCCTTAGCCCAATA
*
36974890 TAGTAA-TAGTGTGGGCCTTAGCCCAATA
1 CAGTAACT-GTGTGGGCCTTAGCCCAATA
36974918 CAGTAACTGTGTGGGCCTTAGCCCAATA
1 CAGTAACTGTGTGGGCCTTAGCCCAATA
36974946 CAGTAAC
1 CAGTAAC
36974953 CAGTACAGTG
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
28 55 0.98
29 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (28 bp):
CAGTAACTGTGTGGGCCTTAGCCCAATA
Found at i:36975106 original size:26 final size:25
Alignment explanation
Indices: 36975077--36975165 Score: 110
Period size: 26 Copynumber: 3.4 Consensus size: 25
36975067 CAAAGCTACA
36975077 AGTAATAGTATCATAGCAAGGTTGCC
1 AGTAATAGTATCATAGCAA-GTTGCC
*
36975103 AGTAACAGTATCGCGATA--AAGTTGCC
1 AGTAATAGTAT--C-ATAGCAAGTTGCC
36975129 AGTAATAGTATCATAGCAAAGTTGCC
1 AGTAATAGTATCATAGC-AAGTTGCC
36975155 AGTAATAGTAT
1 AGTAATAGTAT
36975166 ACTTCCTCCA
Statistics
Matches: 55, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
23 3 0.05
24 1 0.02
26 45 0.82
27 2 0.04
28 1 0.02
29 3 0.05
ACGTcount: A:0.37, C:0.15, G:0.21, T:0.27
Consensus pattern (25 bp):
AGTAATAGTATCATAGCAAGTTGCC
Found at i:36975386 original size:27 final size:27
Alignment explanation
Indices: 36975344--36975676 Score: 224
Period size: 27 Copynumber: 12.6 Consensus size: 27
36975334 TTCACCCTTT
* * *
36975344 AGGGCATTTTGGTCATTTTACCCTACG
1 AGGGTATTTCGGTCATTTTACCCTTCG
* *
36975371 GGGGTATTTCAGTCATTTTA-CCTTACG
1 AGGGTATTTCGGTCATTTTACCCTT-CG
* *
36975398 AGGGTATTTCGGTTATTTCACCCTTCG
1 AGGGTATTTCGGTCATTTTACCCTTCG
* * *
36975425 AGGGTA-TTCTGGTTATTTCACCCTTTG
1 AGGGTATTTC-GGTCATTTTACCCTTCG
* *
36975452 GGGGTA-TTCCG--A--TT-CCCTTCG
1 AGGGTATTTCGGTCATTTTACCCTTCG
* * *
36975473 GGGGTATTTCGATCATTTTACCCTTCA
1 AGGGTATTTCGGTCATTTTACCCTTCG
* * *
36975500 AGAGTATTTCGGTCATTTTATCCTT-T
1 AGGGTATTTCGGTCATTTTACCCTTCG
* *
36975526 AAGGTATTTCGGTCATTTTACCTTTCG
1 AGGGTATTTCGGTCATTTTACCCTTCG
* ** *
36975553 -GAGGTATTTCAGTCATTTTACAATTTG
1 AG-GGTATTTCGGTCATTTTACCCTTCG
* ** *
36975580 GGGGTATTTTAGACATTTTACCCTAT-G
1 AGGGTATTTCGGTCATTTTACCCT-TCG
* *
36975607 AGGTTATTTCGATCATTTTACCCTAT-G
1 AGGGTATTTCGGTCATTTTACCCT-TCG
* *
36975634 GGGGTATTTCGATCATTTTACCCTAT-G
1 AGGGTATTTCGGTCATTTTACCCT-TCG
*
36975661 AGGGTATTTTGGTCAT
1 AGGGTATTTCGGTCAT
36975677 AACAGTGTAA
Statistics
Matches: 246, Mismatches: 47, Indels: 26
0.77 0.15 0.08
Matches are distributed among these distances:
21 12 0.05
22 4 0.02
24 2 0.01
26 30 0.12
27 192 0.78
28 6 0.02
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.42
Consensus pattern (27 bp):
AGGGTATTTCGGTCATTTTACCCTTCG
Found at i:36975469 original size:21 final size:21
Alignment explanation
Indices: 36975445--36975485 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
36975435 GGTTATTTCA
*
36975445 CCCTTTGGGGGTATTCCGATT
1 CCCTTCGGGGGTATTCCGATT
*
36975466 CCCTTCGGGGGTATTTCGAT
1 CCCTTCGGGGGTATTCCGAT
36975486 CATTTTACCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.10, C:0.24, G:0.29, T:0.37
Consensus pattern (21 bp):
CCCTTCGGGGGTATTCCGATT
Found at i:36977038 original size:22 final size:21
Alignment explanation
Indices: 36977003--36977046 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
36976993 CCACTATACC
* *
36977003 ACAAGCTCTTTTATGTCATAAA
1 ACAAGCACTATTAT-TCATAAA
*
36977025 ACAAGCACTATTATTTATAAA
1 ACAAGCACTATTATTCATAAA
36977046 A
1 A
36977047 TCTATATGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.43, C:0.16, G:0.07, T:0.34
Consensus pattern (21 bp):
ACAAGCACTATTATTCATAAA
Found at i:36979159 original size:3 final size:3
Alignment explanation
Indices: 36979151--36979187 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
36979141 AGGGTAGATG
36979151 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
36979188 ATTTAGTTGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:36988271 original size:49 final size:48
Alignment explanation
Indices: 36988205--36988337 Score: 142
Period size: 49 Copynumber: 2.7 Consensus size: 48
36988195 AGCACTCACA
* *
36988205 CCAACTGGTTAGTAACTAAGATACCCTACCAGTGG-CTCATCATACATG
1 CCAACTGGTTAGCAACTAACATACCCTACCAGTGGCCT-ATCATACATG
* * *
36988253 CCAATCTGGTTAGCAACTAACATGCCCTACCAGTGGCCTATCATATAATC
1 CCAA-CTGGTTAGCAACTAACATACCCTACCAGTGGCCTATCATA-CATG
* * * * *
36988303 CCACCTAGTTAGCAACTAGCATGCCTTACCAGTGG
1 CCAACTGGTTAGCAACTAACATACCCTACCAGTGG
36988338 TCTAGCACAT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
48 4 0.05
49 62 0.85
50 7 0.10
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (48 bp):
CCAACTGGTTAGCAACTAACATACCCTACCAGTGGCCTATCATACATG
Found at i:36988360 original size:49 final size:49
Alignment explanation
Indices: 36988261--36988387 Score: 148
Period size: 49 Copynumber: 2.6 Consensus size: 49
36988251 TGCCAATCTG
* *
36988261 GTTAGCAACTAACATGCCCTACCAGTGGCCTATCATATAATCCCACCTA
1 GTTAGCAACTAACATGCCCTACCAGTGGCCTAGCACATAATCCCACCTA
* * * * **
36988310 GTTAGCAACTAGCATGCCTTACCAGTGGTCTAGCACAT-GTACCCTTCTA
1 GTTAGCAACTAACATGCCCTACCAGTGGCCTAGCACATAAT-CCCACCTA
* *
36988359 GTTTGCAACTACCATGCCCTACCAGTGGC
1 GTTAGCAACTAACATGCCCTACCAGTGGC
36988388 TCATGATAAT
Statistics
Matches: 65, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 1 0.02
49 64 0.98
ACGTcount: A:0.26, C:0.31, G:0.17, T:0.26
Consensus pattern (49 bp):
GTTAGCAACTAACATGCCCTACCAGTGGCCTAGCACATAATCCCACCTA
Found at i:36990934 original size:16 final size:17
Alignment explanation
Indices: 36990915--36990953 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
36990905 ACGGTTGGCT
36990915 AACTCTAAGATTGGA-A
1 AACTCTAAGATTGGACA
* *
36990931 AACTCTAAGGTTTGACA
1 AACTCTAAGATTGGACA
36990948 AACTCT
1 AACTCT
36990954 TTTATAAGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 13 0.65
17 7 0.35
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.28
Consensus pattern (17 bp):
AACTCTAAGATTGGACA
Found at i:36993035 original size:20 final size:20
Alignment explanation
Indices: 36993002--36993041 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
36992992 GGTCTCGATA
* *
36993002 CTAAGGGAAGGTATCAATAC
1 CTAAGAGAAAGTATCAATAC
*
36993022 CTAAGAGAAAGTATCGATAC
1 CTAAGAGAAAGTATCAATAC
36993042 TTCAAGCATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (20 bp):
CTAAGAGAAAGTATCAATAC
Found at i:36999442 original size:25 final size:25
Alignment explanation
Indices: 36999409--36999472 Score: 101
Period size: 25 Copynumber: 2.5 Consensus size: 25
36999399 AAATAATTCA
*
36999409 GCAACTTAAACAAAAGGCTTAATCAG
1 GCAA-TTAACCAAAAGGCTTAATCAG
*
36999435 GCAATTAACCAAAAGGCTTAATTAG
1 GCAATTAACCAAAAGGCTTAATCAG
36999460 GCAATTAACCAAA
1 GCAATTAACCAAA
36999473 TCAAATCTCG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
25 32 0.89
26 4 0.11
ACGTcount: A:0.47, C:0.19, G:0.14, T:0.20
Consensus pattern (25 bp):
GCAATTAACCAAAAGGCTTAATCAG
Found at i:37000358 original size:26 final size:26
Alignment explanation
Indices: 37000328--37000394 Score: 75
Period size: 25 Copynumber: 2.6 Consensus size: 26
37000318 AGGGACAACC
* * *
37000328 ATAAAAATAAAAATATAGTTTAA-CAT
1 ATAAAAATAAAAATA-AGTCTAAGAAA
*
37000354 ATAAAAAT-GAAATAAGTCTAAGAAA
1 ATAAAAATAAAAATAAGTCTAAGAAA
37000379 ATAAAAATAAAAATAA
1 ATAAAAATAAAAATAA
37000395 AAATAAAACA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
24 6 0.18
25 14 0.41
26 14 0.41
ACGTcount: A:0.67, C:0.03, G:0.06, T:0.24
Consensus pattern (26 bp):
ATAAAAATAAAAATAAGTCTAAGAAA
Found at i:37000385 original size:6 final size:6
Alignment explanation
Indices: 37000376--37000402 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
37000366 TAAGTCTAAG
37000376 AAAATA AAAATA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAA
37000403 CAAATAGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:37001829 original size:16 final size:16
Alignment explanation
Indices: 37001796--37001838 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
37001786 TAAGAATCAT
*
37001796 AAAAAATAACAAGTAA
1 AAAAAATAAAAAGTAA
*
37001812 AAAAAATAAAACAGAAA
1 AAAAAATAAAA-AGTAA
37001829 ACAAAAATAA
1 A-AAAAATAA
37001839 TAATAAGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 10 0.43
17 5 0.22
18 8 0.35
ACGTcount: A:0.79, C:0.07, G:0.05, T:0.09
Consensus pattern (16 bp):
AAAAAATAAAAAGTAA
Found at i:37001843 original size:6 final size:6
Alignment explanation
Indices: 37001813--37001882 Score: 52
Period size: 6 Copynumber: 11.3 Consensus size: 6
37001803 AACAAGTAAA
* * * * *
37001813 AAAAAT AAAACA- GAAAAC AAAAAT AATAAT AAGAAT AATAAT GAAAAAT
1 AAAAAT AAAA-AT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT -AAAAAT
*
37001862 AACAAAT AAAAAT AAGAAT AA
1 AA-AAAT AAAAAT AAAAAT AA
37001883 TAACTAAATA
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
5 1 0.02
6 39 0.75
7 12 0.23
ACGTcount: A:0.74, C:0.04, G:0.06, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:37001884 original size:22 final size:24
Alignment explanation
Indices: 37001849--37001895 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
37001839 TAATAAGAAT
37001849 AATAATGAAAAATAAC-AAATAAA
1 AATAATGAAAAATAACTAAATAAA
*
37001872 AATAA-GAATAATAACTAAATAAA
1 AATAATGAAAAATAACTAAATAAA
37001895 A
1 A
37001896 GATAGGGGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 9 0.41
23 13 0.59
ACGTcount: A:0.72, C:0.04, G:0.04, T:0.19
Consensus pattern (24 bp):
AATAATGAAAAATAACTAAATAAA
Found at i:37008743 original size:46 final size:46
Alignment explanation
Indices: 37008665--37008756 Score: 159
Period size: 46 Copynumber: 2.0 Consensus size: 46
37008655 ACATTGCTAT
*
37008665 AACTCAGTATGGTTTTCTTCACAGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACAGAAACACCATACCTACTTTTCAC
37008711 AACTCAGTATGGTTTTCTTCA-ATGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACA-GAAACACCATACCTACTTTTCAC
37008757 GATTTGCCAT
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
45 1 0.02
46 43 0.98
ACGTcount: A:0.30, C:0.26, G:0.09, T:0.35
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACAGAAACACCATACCTACTTTTCAC
Found at i:37017926 original size:51 final size:51
Alignment explanation
Indices: 37017839--37017951 Score: 190
Period size: 51 Copynumber: 2.2 Consensus size: 51
37017829 AAGACCATAA
* *
37017839 ATGAAAGATGTTATAGTAGTCTAGTATGTGGCACGTAGCGTAAGGTCATGG
1 ATGAAAGATGTTATAGTAGTCTAGTATATGGCACGTAGCGTAAGGCCATGG
* *
37017890 ATGAAAGATGTTATAGTAGTCTGGTATATGGTACGTAGCGTAAGGCCATGG
1 ATGAAAGATGTTATAGTAGTCTAGTATATGGCACGTAGCGTAAGGCCATGG
37017941 ATGAAAGATGT
1 ATGAAAGATGT
37017952 CATGGCAGCA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (51 bp):
ATGAAAGATGTTATAGTAGTCTAGTATATGGCACGTAGCGTAAGGCCATGG
Found at i:37018217 original size:102 final size:102
Alignment explanation
Indices: 37017987--37018210 Score: 448
Period size: 102 Copynumber: 2.2 Consensus size: 102
37017977 GCATATGGCA
37017987 TAAGACCATGGATGAAAGACAACATGGTGACAAGGTACAAGGTATAGGGTAAATGGTGTAAGACC
1 TAAGACCATGGATGAAAGACAACATGGTGACAAGGTACAAGGTATAGGGTAAATGGTGTAAGACC
37018052 TTGGATGAAAGATGCTATGGCAGCCAAGTATAATGAG
66 TTGGATGAAAGATGCTATGGCAGCCAAGTATAATGAG
37018089 TAAGACCATGGATGAAAGACAACATGGTGACAAGGTACAAGGTATAGGGTAAATGGTGTAAGACC
1 TAAGACCATGGATGAAAGACAACATGGTGACAAGGTACAAGGTATAGGGTAAATGGTGTAAGACC
37018154 TTGGATGAAAGATGCTATGGCAGCCAAGTATAATGAG
66 TTGGATGAAAGATGCTATGGCAGCCAAGTATAATGAG
37018191 TAAGACCATGGATGAAAGAC
1 TAAGACCATGGATGAAAGAC
37018211 TCCATGGCAT
Statistics
Matches: 122, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
102 122 1.00
ACGTcount: A:0.39, C:0.12, G:0.29, T:0.20
Consensus pattern (102 bp):
TAAGACCATGGATGAAAGACAACATGGTGACAAGGTACAAGGTATAGGGTAAATGGTGTAAGACC
TTGGATGAAAGATGCTATGGCAGCCAAGTATAATGAG
Found at i:37018280 original size:33 final size:33
Alignment explanation
Indices: 37018243--37018336 Score: 116
Period size: 33 Copynumber: 2.8 Consensus size: 33
37018233 TAGTCCTCCG
* *
37018243 GGACAGTAAACACGAAACAGAGTAAGTTCGTCA
1 GGACAGTAAACACGAAAAAGAGTAAGTCCGTCA
* * * *
37018276 GGACAGTAAACATGGAATAGAGTAAGTCCGTCG
1 GGACAGTAAACACGAAAAAGAGTAAGTCCGTCA
* *
37018309 GGATAGTAAATACGAAAAAGAGTAAGTC
1 GGACAGTAAACACGAAAAAGAGTAAGTC
37018337 TATTGAGACA
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 51 1.00
ACGTcount: A:0.43, C:0.14, G:0.27, T:0.17
Consensus pattern (33 bp):
GGACAGTAAACACGAAAAAGAGTAAGTCCGTCA
Found at i:37038362 original size:21 final size:21
Alignment explanation
Indices: 37038330--37038370 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
37038320 GAACATTTGG
37038330 TGTATAGGCTAAGAA-AGGCCT
1 TGTATAGGCTAA-AACAGGCCT
37038351 TGTAT-GGCCTAAAACAGGCC
1 TGTATAGG-CTAAAACAGGCC
37038371 CCTCGAGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.32, C:0.20, G:0.27, T:0.22
Consensus pattern (21 bp):
TGTATAGGCTAAAACAGGCCT
Found at i:37057317 original size:7 final size:7
Alignment explanation
Indices: 37057299--37057362 Score: 74
Period size: 7 Copynumber: 9.1 Consensus size: 7
37057289 TTTCTTAAGC
37057299 GATGTGG
1 GATGTGG
* *
37057306 AATGTGT
1 GATGTGG
37057313 GATGTGG
1 GATGTGG
37057320 GATGTGG
1 GATGTGG
37057327 GATGTGG
1 GATGTGG
*
37057334 GATATGG
1 GATGTGG
*
37057341 GATATGG
1 GATGTGG
*
37057348 GATATGG
1 GATGTGG
*
37057355 GATATGG
1 GATGTGG
37057362 G
1 G
37057363 TATATATAGA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 52 1.00
ACGTcount: A:0.22, C:0.00, G:0.48, T:0.30
Consensus pattern (7 bp):
GATGTGG
Found at i:37057859 original size:58 final size:58
Alignment explanation
Indices: 37057762--37057939 Score: 293
Period size: 58 Copynumber: 3.0 Consensus size: 58
37057752 CAAAATCTTA
37057762 ATATTTATATATAAAATATTATGTGTTACTATATGTGTAAGTTTGTCTTTCTTTTTTT
1 ATATTTATATATAAAATATTATGTGTTACTATATGTGTAAGTTTGTCTTTCTTTTTTT
* * *
37057820 ATATCTATATATAAAATATTATGTGTTACTATATATGTAAGTTTGTCTCTTTTTTTTTAT
1 ATATTTATATATAAAATATTATGTGTTACTATATGTGTAAGTTTGTCT-TTCTTTTTT-T
* *
37057880 ATATTTATATATAAAATATTCTGTGTTACTATATGTGCAAGTTTGTCTTTCTTTTTTT
1 ATATTTATATATAAAATATTATGTGTTACTATATGTGTAAGTTTGTCTTTCTTTTTTT
37057938 AT
1 AT
37057940 TGGACTTTTT
Statistics
Matches: 110, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
58 49 0.45
59 16 0.15
60 45 0.41
ACGTcount: A:0.28, C:0.07, G:0.10, T:0.56
Consensus pattern (58 bp):
ATATTTATATATAAAATATTATGTGTTACTATATGTGTAAGTTTGTCTTTCTTTTTTT
Found at i:37057938 original size:60 final size:60
Alignment explanation
Indices: 37057762--37057939 Score: 290
Period size: 60 Copynumber: 3.0 Consensus size: 60
37057752 CAAAATCTTA
37057762 ATATTTATATATAAAATATTATGTGTTACTATATGTGTAAGTTTGTCTTTC-TTTTTT-T
1 ATATTTATATATAAAATATTATGTGTTACTATATGTGTAAGTTTGTCTTTCTTTTTTTAT
* *
37057820 ATATCTATATATAAAATATTATGTGTTACTATATATGTAAGTTTGTCTCTT-TTTTTTTAT
1 ATATTTATATATAAAATATTATGTGTTACTATATGTGTAAGTTTGTCT-TTCTTTTTTTAT
* *
37057880 ATATTTATATATAAAATATTCTGTGTTACTATATGTGCAAGTTTGTCTTTCTTTTTTTAT
1 ATATTTATATATAAAATATTATGTGTTACTATATGTGTAAGTTTGTCTTTCTTTTTTTAT
37057940 TGGACTTTTT
Statistics
Matches: 110, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
58 46 0.42
59 10 0.09
60 54 0.49
ACGTcount: A:0.28, C:0.07, G:0.10, T:0.56
Consensus pattern (60 bp):
ATATTTATATATAAAATATTATGTGTTACTATATGTGTAAGTTTGTCTTTCTTTTTTTAT
Found at i:37061931 original size:13 final size:13
Alignment explanation
Indices: 37061913--37061937 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37061903 AAAATATATT
37061913 ATTAATTAAAAAC
1 ATTAATTAAAAAC
37061926 ATTAATTAAAAA
1 ATTAATTAAAAA
37061938 AATTTGAAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (13 bp):
ATTAATTAAAAAC
Found at i:37064738 original size:15 final size:15
Alignment explanation
Indices: 37064711--37064756 Score: 67
Period size: 15 Copynumber: 3.1 Consensus size: 15
37064701 ATTTTTGTTA
37064711 AATTATATTTAATAAT
1 AATTAT-TTTAATAAT
37064727 AATTATTTTAATAAT
1 AATTATTTTAATAAT
*
37064742 AATTATGTTAA-AAT
1 AATTATTTTAATAAT
37064756 A
1 A
37064757 TGATTAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 4 0.14
15 19 0.66
16 6 0.21
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (15 bp):
AATTATTTTAATAAT
Found at i:37064947 original size:44 final size:45
Alignment explanation
Indices: 37064897--37064987 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
37064887 ACCTCTATTC
**
37064897 CATTCAACCAAACACAAGA-TTACTATTATGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTTACTATTACACCTCTATTCCATTA
*** *
37064941 CATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTTACTATTACACCTCTATTCCATTA
37064986 CA
1 CA
37064988 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.34, C:0.27, G:0.05, T:0.33
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTTACTATTACACCTCTATTCCATTA
Found at i:37064987 original size:16 final size:16
Alignment explanation
Indices: 37064968--37065019 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
37064958 GATTTGCTAT
* *
37064968 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
37064984 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
37065000 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
37065016 TACA
1 TACA
37065020 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:37067703 original size:24 final size:24
Alignment explanation
Indices: 37067675--37067720 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
37067665 TCTTTCTAGA
**
37067675 ATATTTAGTATTTATTAGTATAAT
1 ATATTTAACATTTATTAGTATAAT
37067699 ATATTTAACATTTATTAGTATA
1 ATATTTAACATTTATTAGTATA
37067721 GTTTATTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.52
Consensus pattern (24 bp):
ATATTTAACATTTATTAGTATAAT
Found at i:37069531 original size:26 final size:26
Alignment explanation
Indices: 37069492--37069546 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
37069482 TGCATAGTTC
*
37069492 AAGATAGGCTCGTGGTGGGCTTTGGA
1 AAGATAGGCCCGTGGTGGGCTTTGGA
*
37069518 AAGATAGGCCCGTGGTGTGCTTTGGA
1 AAGATAGGCCCGTGGTGGGCTTTGGA
37069544 AAG
1 AAG
37069547 GATGGCGTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.22, C:0.13, G:0.40, T:0.25
Consensus pattern (26 bp):
AAGATAGGCCCGTGGTGGGCTTTGGA
Found at i:37071821 original size:43 final size:43
Alignment explanation
Indices: 37071748--37071887 Score: 126
Period size: 43 Copynumber: 3.3 Consensus size: 43
37071738 ATATCCCGGA
* * * *
37071748 TATGGTCTTACATGTAACCTCGTATCGATGCCAATAGCCCAGC
1 TATGGTCTTACACGAAATCTCATATCGATGCCAATAGCCCAGC
* *
37071791 TATGGTCTTACACGAAAT-TACATATTGATGCCAAT-GTCCCAAAC
1 TATGGTCTTACACGAAATCT-CATATCGATGCCAATAG-CCC-AGC
* * * * *
37071835 -ATGGTCTCACACGAAGTCTCATATCGATGCC-ATATCTCAGA
1 TATGGTCTTACACGAAATCTCATATCGATGCCAATAGCCCAGC
37071876 TATGGTCTTACA
1 TATGGTCTTACA
37071888 TGTAATCTAA
Statistics
Matches: 77, Mismatches: 14, Indels: 13
0.74 0.13 0.12
Matches are distributed among these distances:
41 1 0.01
42 16 0.21
43 57 0.74
44 3 0.04
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (43 bp):
TATGGTCTTACACGAAATCTCATATCGATGCCAATAGCCCAGC
Found at i:37087083 original size:61 final size:63
Alignment explanation
Indices: 37086987--37087105 Score: 188
Period size: 61 Copynumber: 1.9 Consensus size: 63
37086977 CTGGGCTTGG
* *
37086987 CACTTTATTTTTTCTAATTTGGTATCTATATTTTTTTGGCTCA-ATTTGGTACTTGAATTTAA
1 CACTTTATTTTTTCTAATTTGGTATCTAAACTTTTTTGGCTCATATTTGGTACTTGAATTTAA
* *
37087049 CACTTT-TTTTTTTTAATTTGGTATCTAAACTTTTTTGGGTCATATTTGGTACTTGAA
1 CACTTTATTTTTTCTAATTTGGTATCTAAACTTTTTTGGCTCATATTTGGTACTTGAA
37087106 CTTGACTTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
61 32 0.62
62 20 0.38
ACGTcount: A:0.22, C:0.11, G:0.13, T:0.55
Consensus pattern (63 bp):
CACTTTATTTTTTCTAATTTGGTATCTAAACTTTTTTGGCTCATATTTGGTACTTGAATTTAA
Found at i:37087117 original size:61 final size:60
Alignment explanation
Indices: 37086988--37087117 Score: 172
Period size: 62 Copynumber: 2.1 Consensus size: 60
37086978 TGGGCTTGGC
* * * *
37086988 ACTTTATTTTTTCTAATTTGGTATCTATATTTTTTTGGCTCAATTTGGTACTTGAATTTAA
1 ACTTTTTTTTTTCTAATTTGGTATCTAAACTTTTTTGGCTCAATTTGGTACTTGAACTT-A
* *
37087049 CACTTTTTTTTTT-TAATTTGGTATCTAAACTTTTTTGGGTCATATTTGGTACTTGAACTTG
1 -ACTTTTTTTTTTCTAATTTGGTATCTAAACTTTTTTGGCTCA-ATTTGGTACTTGAACTTA
37087110 ACTTTTTT
1 ACTTTTTT
37087118 CCTAATTTGG
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
60 8 0.13
61 26 0.43
62 27 0.44
ACGTcount: A:0.21, C:0.11, G:0.12, T:0.56
Consensus pattern (60 bp):
ACTTTTTTTTTTCTAATTTGGTATCTAAACTTTTTTGGCTCAATTTGGTACTTGAACTTA
Found at i:37088226 original size:16 final size:15
Alignment explanation
Indices: 37088205--37088248 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
37088195 TTTAAAAATT
37088205 ATAAAAATATTTAAAA
1 ATAAAAA-ATTTAAAA
*
37088221 ATAAAAAATTCAAAA
1 ATAAAAAATTTAAAA
*
37088236 TTCAAAAAATTTA
1 AT-AAAAAATTTA
37088249 TAAGAGTTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 8 0.33
16 16 0.67
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30
Consensus pattern (15 bp):
ATAAAAAATTTAAAA
Found at i:37089349 original size:29 final size:29
Alignment explanation
Indices: 37089302--37089437 Score: 148
Period size: 30 Copynumber: 4.7 Consensus size: 29
37089292 TGTTTTACAG
* ** * *
37089302 ATTTTATAGTTTTTTCACTGTTTTTCTAG
1 ATTTTACAGTTTTGCCACTGTTTTTCCAA
*
37089331 ATTTTACAGTTTTGCCACT-TGTTTCCAA
1 ATTTTACAGTTTTGCCACTGTTTTTCCAA
* * * *
37089359 AATTTACAGTTCTGCCACTATTTTTTCTAA
1 ATTTTACAGTTTTGCCACT-GTTTTTCCAA
*
37089389 ATTTTACAATTTTGCCACTGGTTTTTCCAA
1 ATTTTACAGTTTTGCCACT-GTTTTTCCAA
37089419 ATTTTACAGTTTTGCCACT
1 ATTTTACAGTTTTGCCACT
37089438 ATTCTTGAAA
Statistics
Matches: 88, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
28 23 0.26
29 16 0.18
30 49 0.56
ACGTcount: A:0.22, C:0.18, G:0.10, T:0.50
Consensus pattern (29 bp):
ATTTTACAGTTTTGCCACTGTTTTTCCAA
Found at i:37089387 original size:58 final size:59
Alignment explanation
Indices: 37089322--37089440 Score: 177
Period size: 60 Copynumber: 2.0 Consensus size: 59
37089312 TTTTTCACTG
* *
37089322 TTTTTCTAGATTTTACAGTTTTGCCACT-TGTTTCCAAAATTTACAGTTCTGCCACTAT
1 TTTTTCTAAATTTTACAATTTTGCCACTGTGTTTCCAAAATTTACAGTTCTGCCACTAT
* * *
37089380 TTTTTCTAAATTTTACAATTTTGCCACTGGTTTTTCCAAATTTTACAGTTTTGCCACTAT
1 TTTTTCTAAATTTTACAATTTTGCCACT-GTGTTTCCAAAATTTACAGTTCTGCCACTAT
37089440 T
1 T
37089441 CTTGAAAAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
58 26 0.48
60 28 0.52
ACGTcount: A:0.23, C:0.19, G:0.09, T:0.49
Consensus pattern (59 bp):
TTTTTCTAAATTTTACAATTTTGCCACTGTGTTTCCAAAATTTACAGTTCTGCCACTAT
Found at i:37089456 original size:60 final size:58
Alignment explanation
Indices: 37089334--37089461 Score: 148
Period size: 60 Copynumber: 2.2 Consensus size: 58
37089324 TTTCTAGATT
* *** **
37089334 TTACAGTTTTGCCACTTGTTTCCAAAATTTACAGTTCTGCCACTATTTTTTCTAAATT
1 TTACAGTTTTGCCACTTGTTTCCAAAATTTACAGTTCTGCCACTATTCTTGAAAAAAA
* * * *
37089392 TTACAATTTTGCCACTGGTTTTTCCAAATTTTACAGTTTTGCCACTATTCTTGAAAAAAA
1 TTACAGTTTTGCCACT--TGTTTCCAAAATTTACAGTTCTGCCACTATTCTTGAAAAAAA
37089452 TTACAGTTTT
1 TTACAGTTTT
37089462 ATTGTGACAG
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
58 15 0.26
60 42 0.74
ACGTcount: A:0.27, C:0.19, G:0.09, T:0.45
Consensus pattern (58 bp):
TTACAGTTTTGCCACTTGTTTCCAAAATTTACAGTTCTGCCACTATTCTTGAAAAAAA
Found at i:37090142 original size:136 final size:135
Alignment explanation
Indices: 37089885--37090261 Score: 497
Period size: 136 Copynumber: 2.8 Consensus size: 135
37089875 TGCATTTAAT
* * * ** *
37089885 TGTGCGTTGTGTACCCACAGCAAAAGCATATTCCAACTGCGTCCATTTTACCATGCAAGCACAAC
1 TGTGCGCTGTGTATCCACAGCAAAAGCAGATTCCAACTGCGTCCATTTTACTGTGGAA-CACAAC
*
37089950 CCTCTGACAACTTTTATCTGTGAGTATGTTGTGCTTCCACTGCAATTGACAAATTTTATCTGCAT
65 CCTCTGACAACTTTTATCTGCGAGTATGTTGTGCTTCCACTGCAATTGACAAATTTTATCTGCAT
*
37090015 TATATG
130 TATATA
* *
37090021 TGTGCGCTGTGTATCCACAGAAAAAACAGATTCCAACTGCGTCCATTTTACTGTGTGAACACAAC
1 TGTGCGCTGTGTATCCACAGCAAAAGCAGATTCCAACTGCGTCCATTTTACTGTG-GAACACAAC
* * * * *
37090086 CCTCTGACAGCTTTTTTCTGCGAGTATGTTGTGCTTCCA-TGGCTATTAGA-AGATTTTATTTGC
65 CCTCTGACAACTTTTATCTGCGAGTATGTTGTGCTTCCACT-GCAATT-GACAAATTTTATCTGC
37090149 ATTATATA
128 ATTATATA
* * * * *
37090157 TGTGCGCTGTGTATCCACAGCAAAAGCAGATTCCAAATGCGTCCATTTTATTGTACGAGCAGAAC
1 TGTGCGCTGTGTATCCACAGCAAAAGCAGATTCCAACTGCGTCCATTTTACTGT-GGAACACAAC
* *
37090222 CCTCTGACAACTTTTATCTGCGAGCATGTCGTGCTTCCAC
65 CCTCTGACAACTTTTATCTGCGAGTATGTTGTGCTTCCAC
37090262 GGCCAGTGGC
Statistics
Matches: 210, Mismatches: 26, Indels: 9
0.86 0.11 0.04
Matches are distributed among these distances:
135 1 0.00
136 205 0.98
137 4 0.02
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.33
Consensus pattern (135 bp):
TGTGCGCTGTGTATCCACAGCAAAAGCAGATTCCAACTGCGTCCATTTTACTGTGGAACACAACC
CTCTGACAACTTTTATCTGCGAGTATGTTGTGCTTCCACTGCAATTGACAAATTTTATCTGCATT
ATATA
Found at i:37090650 original size:37 final size:37
Alignment explanation
Indices: 37090566--37090667 Score: 105
Period size: 37 Copynumber: 2.8 Consensus size: 37
37090556 TTTACCATAT
* * * **
37090566 TGAATTGATTGATATGCGAGATTGCTTGTTATTATGT
1 TGAATTGATTGATATGCGAAATTGTTTGTCATTATAC
* * * *
37090603 TAAATAGATTGATATGCGAAACTGTTTGTCATTGTAC
1 TGAATTGATTGATATGCGAAATTGTTTGTCATTATAC
* *
37090640 TGAATTGATTGACATGTGAAATTGTTTG
1 TGAATTGATTGATATGCGAAATTGTTTG
37090668 CTATTACTGT
Statistics
Matches: 51, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
37 51 1.00
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (37 bp):
TGAATTGATTGATATGCGAAATTGTTTGTCATTATAC
Found at i:37091811 original size:3 final size:3
Alignment explanation
Indices: 37091803--37091837 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
37091793 ATATAATTCA
37091803 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
37091838 AAGAAACCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:37092163 original size:19 final size:19
Alignment explanation
Indices: 37092141--37092183 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
37092131 TTTGCAAGTG
37092141 TAAATGGTATTTTTAAATA
1 TAAATGGTATTTTTAAATA
37092160 TAAATGGTATTTTTAAATA
1 TAAATGGTATTTTTAAATA
37092179 TAAAT
1 TAAAT
37092184 TAATACATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (19 bp):
TAAATGGTATTTTTAAATA
Found at i:37100684 original size:9 final size:9
Alignment explanation
Indices: 37100667--37100703 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
37100657 TGAGTTTTCA
37100667 AATTCGAAT
1 AATTCGAAT
*
37100676 AACTCGAAT
1 AATTCGAAT
37100685 AATTCGAAT
1 AATTCGAAT
37100694 AATTCGAAT
1 AATTCGAAT
37100703 A
1 A
37100704 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:37100971 original size:30 final size:29
Alignment explanation
Indices: 37100917--37100975 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
37100907 AAACCTTTTA
*
37100917 TTTTCCCCCAAAATTTTTACTCCCTCTCAC
1 TTTTCCCCCAAAACTTTTACTCCCT-TCAC
* * *
37100947 TTTTTCCCTAAAACTTTTATTCCCTTCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCAC
37100976 ATCCCACCTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 4 0.16
30 21 0.84
ACGTcount: A:0.20, C:0.36, G:0.00, T:0.44
Consensus pattern (29 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCAC
Found at i:37102383 original size:29 final size:29
Alignment explanation
Indices: 37102348--37102404 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
37102338 CCAATTAATT
*
37102348 TTATTTCTCTTAATTTATTTTGCAATCAC
1 TTATTTCGCTTAATTTATTTTGCAATCAC
37102377 TTATTTCGCTTAATTTATTTTGCAATCA
1 TTATTTCGCTTAATTTATTTTGCAATCA
37102405 TGTTTTTACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.25, C:0.16, G:0.05, T:0.54
Consensus pattern (29 bp):
TTATTTCGCTTAATTTATTTTGCAATCAC
Found at i:37107590 original size:37 final size:37
Alignment explanation
Indices: 37107548--37107659 Score: 109
Period size: 37 Copynumber: 3.0 Consensus size: 37
37107538 GCTTACAAGG
37107548 GACCCATAAGAATGTTCCCTTACTGACTCATATTCGA
1 GACCCATAAGAATGTTCCCTTACTGACTCATATTCGA
* *** * *** *
37107585 TACCCATAAGAATGTGGGCTTACCAT-ACTGCTTACAAGG
1 GACCCATAAGAATGTTCCCTTA-C-TGACT-CATATTCGA
37107624 GACCCATAAGAATGTTCCCTTACTGACTCATATTCG
1 GACCCATAAGAATGTTCCCTTACTGACTCATATTCG
37107660 GTAAACTGTG
Statistics
Matches: 54, Mismatches: 17, Indels: 8
0.68 0.22 0.10
Matches are distributed among these distances:
37 23 0.43
38 8 0.15
39 23 0.43
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (37 bp):
GACCCATAAGAATGTTCCCTTACTGACTCATATTCGA
Found at i:37107646 original size:39 final size:39
Alignment explanation
Indices: 37107527--37107646 Score: 129
Period size: 39 Copynumber: 3.1 Consensus size: 39
37107517 GCATTGTGGG
37107527 CTTACCATACTGCTTACAAGGGACCCATAAGAATGTTCC
1 CTTACCATACTGCTTACAAGGGACCCATAAGAATGTTCC
* *** ** ***
37107566 CTTA-C-TGACT-CATATTCGATACCCATAAGAATGTGGG
1 CTTACCAT-ACTGCTTACAAGGGACCCATAAGAATGTTCC
37107603 CTTACCATACTGCTTACAAGGGACCCATAAGAATGTTCC
1 CTTACCATACTGCTTACAAGGGACCCATAAGAATGTTCC
37107642 CTTAC
1 CTTAC
37107647 TGACTCATAT
Statistics
Matches: 59, Mismatches: 18, Indels: 8
0.69 0.21 0.09
Matches are distributed among these distances:
37 23 0.39
38 8 0.14
39 28 0.47
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.28
Consensus pattern (39 bp):
CTTACCATACTGCTTACAAGGGACCCATAAGAATGTTCC
Found at i:37109696 original size:26 final size:26
Alignment explanation
Indices: 37109667--37109716 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
37109657 TGTATTTTTA
*
37109667 ATTTCA-TAATAATATAAAAATATAAT
1 ATTTCATTAAAAAT-TAAAAATATAAT
*
37109693 ATTTTATTAAAAATTAAAAATATA
1 ATTTCATTAAAAATTAAAAATATA
37109717 TAGAATTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 15 0.71
27 6 0.29
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (26 bp):
ATTTCATTAAAAATTAAAAATATAAT
Found at i:37117261 original size:24 final size:23
Alignment explanation
Indices: 37117225--37117270 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
37117215 GACTAATTAT
*
37117225 AAAAAATATTATTGAATTGAAAA
1 AAAAAATATTATTAAATTGAAAA
*
37117248 AAAAAATTTGTATTAAATTGAAA
1 AAAAAATAT-TATTAAATTGAAA
37117271 TCTAATTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.33
Consensus pattern (23 bp):
AAAAAATATTATTAAATTGAAAA
Found at i:37118375 original size:15 final size:15
Alignment explanation
Indices: 37118339--37118367 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37118329 TATTTGGCTT
37118339 TATTTTTATTTATTA
1 TATTTTTATTTATTA
37118354 TATTTTTATTTATT
1 TATTTTTATTTATT
37118368 TGTTTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TATTTTTATTTATTA
Found at i:37118382 original size:13 final size:14
Alignment explanation
Indices: 37118341--37118374 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
37118331 TTTGGCTTTA
*
37118341 TTTTTATTTATTATA
1 TTTTTATTTATT-TG
37118356 TTTTTATTTATTTG
1 TTTTTATTTATTTG
37118370 TTTTT
1 TTTTT
37118375 TTTTTTTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (14 bp):
TTTTTATTTATTTG
Found at i:37121561 original size:21 final size:21
Alignment explanation
Indices: 37121536--37121577 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
37121526 CATTAATCAG
37121536 ATTGAAGATACATAATTTGGT
1 ATTGAAGATACATAATTTGGT
37121557 ATTGAAGATACATAATTTGGT
1 ATTGAAGATACATAATTTGGT
37121578 TAATTTATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.19, T:0.38
Consensus pattern (21 bp):
ATTGAAGATACATAATTTGGT
Found at i:37122182 original size:16 final size:16
Alignment explanation
Indices: 37122161--37122204 Score: 63
Period size: 17 Copynumber: 2.7 Consensus size: 16
37122151 CAATTAAAAC
37122161 AAATAATTAAGATAAA-
1 AAATAATTAA-ATAAAG
37122177 AAATAATTAAATAAATG
1 AAATAATTAAATAAA-G
37122194 AAATAATTAAA
1 AAATAATTAAA
37122205 CAAGAACAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.19
16 10 0.38
17 11 0.42
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (16 bp):
AAATAATTAAATAAAG
Found at i:37123775 original size:41 final size:40
Alignment explanation
Indices: 37123727--37123826 Score: 137
Period size: 41 Copynumber: 2.5 Consensus size: 40
37123717 GTATTACCGA
* * *
37123727 ATCAATGAAAAGGTTGAAAATGAAGTTATTCGAAAAGTAT
1 ATCAATGAAAAGGTTGAAAAGGAAGTTATCCGAAAAGGAT
* *
37123767 ATCAAATGAAAAGGTTCAAAAGGATGTTATCCGAAAAGGAT
1 ATC-AATGAAAAGGTTGAAAAGGAAGTTATCCGAAAAGGAT
*
37123808 ATCAATGAAAAGGCTGAAA
1 ATCAATGAAAAGGTTGAAA
37123827 GGATATCAGT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
40 17 0.33
41 35 0.67
ACGTcount: A:0.48, C:0.08, G:0.21, T:0.23
Consensus pattern (40 bp):
ATCAATGAAAAGGTTGAAAAGGAAGTTATCCGAAAAGGAT
Found at i:37123863 original size:24 final size:24
Alignment explanation
Indices: 37123798--37123916 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
37123788 GGATGTTATC
37123798 CGAAAAGGATATCAATGAAAAGG-
1 CGAAAAGGATATCAATGAAAAGGT
*
37123821 CTG-AAAGGATATCAGTGAAAAGGT
1 C-GAAAAGGATATCAATGAAAAGGT
* *
37123845 AGAAAAAGATATCAATGAAAAGGT
1 CGAAAAGGATATCAATGAAAAGGT
*
37123869 CGAAAAGGATATCAATTAAAAGGT
1 CGAAAAGGATATCAATGAAAAGGT
* *
37123893 CGAAAGGGATAGCAATG-AAAGGT
1 CGAAAAGGATATCAATGAAAAGGT
37123916 C
1 C
37123917 AATATCTCAT
Statistics
Matches: 83, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
23 28 0.34
24 55 0.66
ACGTcount: A:0.49, C:0.08, G:0.26, T:0.17
Consensus pattern (24 bp):
CGAAAAGGATATCAATGAAAAGGT
Found at i:37125093 original size:26 final size:26
Alignment explanation
Indices: 37125056--37125106 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
37125046 TTTGGCAATG
37125056 CTTTTGAAAAGTGCTGTGGAAAAATA
1 CTTTTGAAAAGTGCTGTGGAAAAATA
* * *
37125082 CTTTTGAGAAGTGCTTTTGAAAAAT
1 CTTTTGAAAAGTGCTGTGGAAAAAT
37125107 TTAACTGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.35, C:0.08, G:0.22, T:0.35
Consensus pattern (26 bp):
CTTTTGAAAAGTGCTGTGGAAAAATA
Found at i:37125100 original size:13 final size:13
Alignment explanation
Indices: 37125054--37125104 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
37125044 AGTTTGGCAA
37125054 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
* * *
37125067 TGCTGTGGAAAAA
1 TGCTTTTGAAAAG
* *
37125080 TACTTTTGAGAAG
1 TGCTTTTGAAAAG
37125093 TGCTTTTGAAAA
1 TGCTTTTGAAAA
37125105 ATTTAACTGT
Statistics
Matches: 28, Mismatches: 10, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.33, C:0.08, G:0.24, T:0.35
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:37129203 original size:7 final size:7
Alignment explanation
Indices: 37129191--37129222 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
37129181 AGTCGATTGA
37129191 TATTTAG
1 TATTTAG
37129198 TATTTAG
1 TATTTAG
37129205 TATTTAG
1 TATTTAG
37129212 TATTTAG
1 TATTTAG
37129219 TATT
1 TATT
37129223 ATGTATATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.59
Consensus pattern (7 bp):
TATTTAG
Found at i:37130434 original size:23 final size:23
Alignment explanation
Indices: 37130404--37132101 Score: 1224
Period size: 23 Copynumber: 75.3 Consensus size: 23
37130394 AATACCCTTA
37130404 AATTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
**
37130427 AATTAAAAACTTTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
* ***
37130449 ACTTAAAAACCCTAACC-CCCTT
1 AATTAAAAACCCTAACCTAATTT
* *
37130471 AACATAAAATCCCTAACCTAATTT
1 AA-TTAAAAACCCTAACCTAATTT
37130495 AATTAAAAACCCTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
* *
37130517 ACTTAAAAACCCTAAGCTAATTT
1 AATTAAAAACCCTAACCTAATTT
* *
37130540 AATTAAAAATCATAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
** * *
37130562 CCTTAAAAATCCTAACCTAATTA
1 AATTAAAAACCCTAACCTAATTT
*
37130585 AAATAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
* *
37130608 AATTAAAAACCATAAACCCAA---
1 AATTAAAAACCCT-AACCTAATTT
37130629 AACTTAAAAACCCTAACCTAATTT
1 AA-TTAAAAACCCTAACCTAATTT
*
37130653 AATTAAAAATCCTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
* * *
37130675 ACTTAAAAACCATAACCTAATTA
1 AATTAAAAACCCTAACCTAATTT
37130698 AATTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
37130721 AATTAAAAACCCTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
* *
37130743 ACTTAAAAACCCTAACCTAATTA
1 AATTAAAAACCCTAACCTAATTT
* *
37130766 AATTAAAAATCCTAACCTAATTA
1 AATTAAAAACCCTAACCTAATTT
*
37130789 AATTAAAAACTCTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
* *** *
37130811 ACTTAAAAACCCTAACCCCCTTG
1 AATTAAAAACCCTAACCTAATTT
*
37130834 ACTTAAAAACCCTAACCTAA-TT
1 AATTAAAAACCCTAACCTAATTT
** *
37130856 AACTTAAAAACATTAACCTAATTA
1 AA-TTAAAAACCCTAACCTAATTT
37130880 AATTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
*
37130903 AATTAAAAATCCTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
* * *
37130925 ACTTAAAAACCATAACCTAATTA
1 AATTAAAAACCCTAACCTAATTT
37130948 AATTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
*
37130971 AATTAAAAATCCTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
* * *
37130993 ACTTAAAAACCATAACCTAATTA
1 AATTAAAAACCCTAACCTAATTT
37131016 AATTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
*
37131039 AATTAAAAATCCTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
* * *
37131061 ACTTAAAAACCATAACCTAATTA
1 AATTAAAAACCCTAACCTAATTT
37131084 AATTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
*
37131107 AATTAAAAATCCTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
* * *
37131129 ACTTAAAAACCATAACCTAATTA
1 AATTAAAAACCCTAACCTAATTT
37131152 AATTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
* *
37131175 AATTAAAAATCCTAAACTAA---
1 AATTAAAAACCCTAACCTAATTT
** *
37131195 CCTTAAAAATCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
*
37131218 ATTTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
*
37131241 AATTAAAAACCTTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
*
37131263 ACTTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
*
37131286 AATTAAAAATCCTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
*
37131308 ACTTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
*
37131331 AA-TAAAAACTCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
37131353 AATTAAAAACCCTAAACTCTAA---
1 AATTAAAAACCCT-AAC-CTAATTT
* *
37131375 ACTTAAAAATCCTAACCTAA-TT
1 AATTAAAAACCCTAACCTAATTT
**
37131397 AACTTAAAAACATTAACCTAA-TT
1 AA-TTAAAAACCCTAACCTAATTT
*
37131420 AACTTACAAACCCTAACCTAATTT
1 AA-TTAAAAACCCTAACCTAATTT
37131444 AATTAAAAACCCTAAACCTAA---
1 AATTAAAAACCCT-AACCTAATTT
*
37131465 ACTTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
*
37131488 AA-TAAAAACTCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
*
37131510 AATTAAAAACCGTAAACTCTAA---
1 AATTAAAAACCCT-AAC-CTAATTT
*
37131532 ACTTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
*
37131555 AA-TAAAAACTCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
37131577 AATTAAAAACCCTAAACCTTAA---
1 AATTAAAAACCCT-AACC-TAATTT
** ***
37131599 ACCTAAAAACCCTAACC-CCCTT
1 AATTAAAAACCCTAACCTAATTT
37131621 AACTTAAAAACCCTAACCTAATTT
1 AA-TTAAAAACCCTAACCTAATTT
*
37131645 AATTAAAAACCGTAAACTCTAA---
1 AATTAAAAACCCT-AAC-CTAATTT
*
37131667 ACTTAAAAACCCTAAACTCTAA---
1 AATTAAAAACCCT-AAC-CTAATTT
* *
37131689 ACTTAAAAACCCTAACCTAATTA
1 AATTAAAAACCCTAACCTAATTT
37131712 AATTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
* *
37131735 ACTTAGAAACCCTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
* *
37131757 ACTTAAAAACCCTAACCTAATTA
1 AATTAAAAACCCTAACCTAATTT
*
37131780 AATT-AAAACCTTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
** ***
37131801 ACCTAAAAACCCTAACC-CCCTT
1 AATTAAAAACCCTAACCTAATTT
37131823 AACTTAAAAACCCTAACCTAATTT
1 AA-TTAAAAACCCTAACCTAATTT
37131847 AATTAAAAACCCTAAAGCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
* * *
37131869 ACTTAAAAACCCTAATCTTATTT
1 AATTAAAAACCCTAACCTAATTT
**
37131892 AATTAAAAA-ATTAAAACCCTAA---
1 AATTAAAAACCCT--AA-CCTAATTT
* *
37131914 ACTT-AAAACCCTAACATAATTT
1 AATTAAAAACCCTAACCTAATTT
*
37131936 AATTAAAAACTCTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
*
37131958 ACTTAAAAACCCTAACCTAA-TT
1 AATTAAAAACCCTAACCTAATTT
*
37131980 AACTTAAAAACCCTAACCTAATTA
1 AA-TTAAAAACCCTAACCTAATTT
* *
37132004 AATTAAAAACCCTAACCTAAGTA
1 AATTAAAAACCCTAACCTAATTT
*
37132027 AATTAAAAACCTTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
* * **
37132049 ACTTAAAAACCTTAACC--CCTT
1 AATTAAAAACCCTAACCTAATTT
*
37132070 AACTTAAAAACCCTAACCTAATTA
1 AA-TTAAAAACCCTAACCTAATTT
37132094 AATTAAAA
1 AATTAAAA
37132102 NNNNNNNNNN
Statistics
Matches: 1347, Mismatches: 186, Indels: 284
0.74 0.10 0.16
Matches are distributed among these distances:
19 4 0.00
20 108 0.08
21 74 0.05
22 356 0.26
23 617 0.46
24 92 0.07
25 96 0.07
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.26
Consensus pattern (23 bp):
AATTAAAAACCCTAACCTAATTT
Found at i:37130511 original size:68 final size:67
Alignment explanation
Indices: 37130404--37132101 Score: 1318
Period size: 68 Copynumber: 25.1 Consensus size: 67
37130394 AATACCCTTA
** **
37130404 AATTAAAAACCCTAACCTAATTTAATTAAAAACTTTAAACCCTAAACTTAAAAACCCTAACCCCC
1 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCCAA
37130469 TT
66 TT
* * * *
37130471 AACATAAAATCCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAAGCTA
1 AA-TTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCCA
37130536 ATTT
65 A-TT
* * ** * **
37130540 AATTAAAAATCATAAACCCTAA---CCTTAAAAATCCT-AA-CCTAATTAAAATAAAAACCCTAA
1 AATTAAAAACCCT-AA-CCTAATTTAATTAAAAACCCTAAACCCT-A--AACTTAAAAACCCTAA
*
37130600 CCTAATTT
61 CCCAA-TT
* * * *
37130608 AATTAAAAACCATAAACCCAA---AACTTAAAAACCCT-AA-CCTAATTTAATTAAAAATCCTAA
1 AATTAAAAACCCT-AACCTAATTTAA-TTAAAAACCCTAAACCCTAA---ACTTAAAAACCCT-A
37130668 ACCCTAA--
60 ACCC-AATT
* * * *
37130675 ACTTAAAAACCATAACCTAATTAAATTAAAAACCCT-AA-CCTAATTTAATTAAAAACCCTAAAC
1 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAA---ACTTAAAAACCCT-AAC
37130738 CCTAA--
62 CC-AATT
* * * * *
37130743 ACTTAAAAACCCTAACCTAATTAAATTAAAAATCCT-AA-CCTAATTAAATTAAAAACTCTAAAC
1 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCT-A--AACTTAAAAACCCT-AAC
37130806 CCTAA--
62 CC-AATT
* *** * * **
37130811 ACTTAAAAACCCTAACCCCCTTGACTTAAAAACCCT-AA-CCTAATTAACTTAAAAACATTAACC
1 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCT-A--AACTTAAAAACCCTAACC
*
37130874 TAATT
63 CAATT
* * *
37130879 AAATTAAAAACCCTAACCTAATTTAATTAAAAATCCTAAACCCTAAACTTAAAAACCATAACCTA
1 -AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCCA
37130944 ATT
65 ATT
* * *
37130947 AAATTAAAAACCCTAACCTAATTTAATTAAAAATCCTAAACCCTAAACTTAAAAACCATAACCTA
1 -AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCCA
37131012 ATT
65 ATT
* * *
37131015 AAATTAAAAACCCTAACCTAATTTAATTAAAAATCCTAAACCCTAAACTTAAAAACCATAACCTA
1 -AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCCA
37131080 ATT
65 ATT
* * *
37131083 AAATTAAAAACCCTAACCTAATTTAATTAAAAATCCTAAACCCTAAACTTAAAAACCATAACCTA
1 -AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCCA
37131148 ATT
65 ATT
* * * *
37131151 AAATTAAAAACCCTAACCTAATTTAATTAAAAATCCTAAA--CTAACCTTAAAAATCCTAACCTA
1 -AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCCA
37131214 ATTT
65 A-TT
* * *
37131218 ATTTAAAAACCCTAACCTAATTTAATTAAAAACCTTAAACCCTAAACTTAAAAACCCTAACCTAA
1 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCCAA
37131283 TTT
66 -TT
* * ** *
37131286 AATTAAAAATCCTAAACCCTAA---ACTTAAAAACCCT-AA-CCTAATTTAATAAAAACTCTAAC
1 AATTAAAAACCCT-AA-CCTAATTTAATTAAAAACCCTAAACCCTAAACT--TAAAAACCCTAAC
*
37131346 CTAATTT
62 CCAA-TT
* * **
37131353 AATTAAAAACCCTAAACTCTAA---ACTTAAAAATCCT-AA-CCTAATTAACTTAAAAACATTAA
1 AATTAAAAACCCT-AAC-CTAATTTAATTAAAAACCCTAAACCCT-A--AACTTAAAAACCCTAA
*
37131413 CCTAATT
61 CCCAATT
* *
37131420 AACTTACAAACCCTAACCTAATTTAATTAAAAACCCTAAA-CCTAAACTTAAAAACCCTAACCTA
1 AA-TTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCCA
37131484 ATTT
65 A-TT
* * * *
37131488 AA-TAAAAACTCTAACCTAATTTAATTAAAAACCGTAAACTCTAAACTTAAAAACCCTAACCTAA
1 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCCAA
37131552 TTT
66 -TT
* * * **
37131555 AA-TAAAAACTCTAACCTAATTTAATTAAAAACCCTAAACCTTAAACCTAAAAACCCTAACCCCC
1 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCCAA
37131619 TT
66 TT
* *
37131621 AACTTAAAAACCCTAACCTAATTTAATTAAAAACCGTAAACTCTAAACTTAAAAACCCTAAACTC
1 AA-TTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCT-AAC-C
*
37131686 TAA--
63 CAATT
* * *
37131689 ACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-AA-CCTAATTTACTTAGAAACCCTAAAC
1 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAA---ACTTAAAAACCCT-AAC
37131752 CCTAA--
62 CC-AATT
* * * * **
37131757 ACTTAAAAACCCTAACCTAATTAAATT-AAAACCTTAAACCCTAAACCTAAAAACCCTAACCCCC
1 AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCCAA
37131821 TT
66 TT
* **
37131823 AACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAAGCCTAAACTTAAAAACCCTAATCTT
1 AA-TTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAA-CCC
*
37131888 ATTT
64 AATT
** * * * *
37131892 AATTAAAAA-ATTAAAACCCTAA---ACTT-AAAACCCT-AA-CATAATTTAATTAAAAACTCTA
1 AATTAAAAACCCT--AA-CCTAATTTAATTAAAAACCCTAAACCCTAA---ACTTAAAAACCCT-
37131950 AACCCTAA--
59 AACCC-AATT
* *
37131958 ACTTAAAAACCCTAACCTAA-TTAACTTAAAAACCCT-AA-CCTAATTAAATTAAAAACCCTAAC
1 AATTAAAAACCCTAACCTAATTTAA-TTAAAAACCCTAAACCCT-A--AACTTAAAAACCCTAAC
* *
37132020 CTAAGTA
62 CCAA-TT
* * * * * *
37132027 AATTAAAAACCTTAAACCCTAA---ACTTAAAAACCTTAACCCCTTAACTTAAAAACCCTAACCT
1 AATTAAAAACCCT-AA-CCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCC
37132089 AATT
64 AATT
37132093 AAATTAAAA
1 -AATTAAAA
37132102 NNNNNNNNNN
Statistics
Matches: 1410, Mismatches: 140, Indels: 162
0.82 0.08 0.09
Matches are distributed among these distances:
64 9 0.01
65 23 0.02
66 146 0.10
67 326 0.23
68 778 0.55
69 85 0.06
70 33 0.02
71 10 0.01
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.26
Consensus pattern (67 bp):
AATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCCAA
TT
Found at i:37131202 original size:20 final size:20
Alignment explanation
Indices: 37131177--37131214 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
37131167 CCTAATTTAA
37131177 TTAAAAATCCTAAACTAACC
1 TTAAAAATCCTAAACTAACC
*
37131197 TTAAAAATCCTAACCTAA
1 TTAAAAATCCTAAACTAA
37131215 TTTATTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (20 bp):
TTAAAAATCCTAAACTAACC
Found at i:37131810 original size:15 final size:15
Alignment explanation
Indices: 37131748--37131815 Score: 54
Period size: 15 Copynumber: 4.6 Consensus size: 15
37131738 TAGAAACCCT
*
37131748 AAACCCTAAACTTAA
1 AAACCCTAAACCTAA
37131763 AAACCCT-AACCTAA
1 AAACCCTAAACCTAA
* *
37131777 TTAAA--TTAAAACCT-T
1 --AAACCCT-AAACCTAA
37131792 AAACCCTAAACCTAA
1 AAACCCTAAACCTAA
37131807 AAACCCTAA
1 AAACCCTAA
37131816 CCCCCTTAAC
Statistics
Matches: 41, Mismatches: 5, Indels: 14
0.68 0.08 0.23
Matches are distributed among these distances:
13 3 0.07
14 13 0.32
15 17 0.41
16 8 0.20
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (15 bp):
AAACCCTAAACCTAA
Found at i:37132100 original size:45 final size:46
Alignment explanation
Indices: 37130400--37132101 Score: 1113
Period size: 45 Copynumber: 37.8 Consensus size: 46
37130390 CATTAATACC
* * **
37130400 CTTAAATTAAAAACCCTAACCTAATTTAATTAAAAACTTTAAACC--
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-AACCTA
* *** *
37130445 CTAAACTTAAAAACCCTAACCCCCTTAACA-TAAAATCCCTAACCTAA
1 CTTAACTTAAAAACCCTAACCTAATTAA-ATTAAAAACCCTAACCT-A
* * *
37130492 TTTAA-TTAAAAACCCTAAACCCT-A--AACTTAAAAACCCTAAGCTAA
1 CTTAACTTAAAAACCCT-AA-CCTAATTAAATTAAAAACCCTAACCT-A
* * * ** *
37130537 TTTAA-TTAAAAATCATAAACCCT-A--ACCTTAAAAATCCTAACCTA
1 CTTAACTTAAAAACCCT-AA-CCTAATTAAATTAAAAACCCTAACCTA
* ** * *
37130581 ATTAAAATAAAAACCCTAACCTAATTTAATTAAAAACCATAAACC--
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-AACCTA
** * *
37130626 CAAAACTTAAAAACCCTAACCTAATTTAATTAAAAATCCTAAACC--
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-AACCTA
* *
37130671 CTAAACTTAAAAACCATAACCTAATTAAATTAAAAACCCTAACCTAA
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCT-A
* *
37130718 TTTAA-TTAAAAACCCTAAACCCT-A--AACTTAAAAACCCTAACCTA
1 CTTAACTTAAAAACCCT-AA-CCTAATTAAATTAAAAACCCTAACCTA
* * * *
37130762 ATTAAATTAAAAATCCTAACCTAATTAAATTAAAAACTCTAAACC--
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-AACCTA
* *** * *
37130807 CTAAACTTAAAAACCCTAACCCCCTTGACTTAAAAACCCTAACCTA
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTA
* **
37130853 ATTAACTTAAAAACATTAACCTAATTAAATTAAAAACCCTAACCTAA
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCT-A
* * * *
37130900 TTTAA-TTAAAAATCCTAAACCCT-A--AACTTAAAAACCATAACCTA
1 CTTAACTTAAAAACCCT-AA-CCTAATTAAATTAAAAACCCTAACCTA
* * * *
37130944 ATTAAATTAAAAACCCTAACCTAATTTAATTAAAAATCCTAAACC--
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-AACCTA
* *
37130989 CTAAACTTAAAAACCATAACCTAATTAAATTAAAAACCCTAACCTAA
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCT-A
* * * *
37131036 TTTAA-TTAAAAATCCTAAACCCT-A--AACTTAAAAACCATAACCTA
1 CTTAACTTAAAAACCCT-AA-CCTAATTAAATTAAAAACCCTAACCTA
* * * *
37131080 ATTAAATTAAAAACCCTAACCTAATTTAATTAAAAATCCTAAACC--
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-AACCTA
* *
37131125 CTAAACTTAAAAACCATAACCTAATTAAATTAAAAACCCTAACCTAA
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCT-A
* * * ** *
37131172 TTTAA-TTAAAAATCCTAAACT-A--ACCTTAAAAATCCTAACCTA
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTA
* * * * *
37131214 ATTTATTTAAAAACCCTAACCTAATTTAATTAAAAACCTTAAACC--
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-AACCTA
* * *
37131259 CTAAACTTAAAAACCCTAACCTAATTTAATTAAAAATCCTAAACC--
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-AACCTA
* * *
37131304 CTAAACTTAAAAACCCTAACCTAATTTAA-TAAAAACTCTAACCTAA
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCT-A
* * * *
37131350 TTTAA-TTAAAAACCCTAAACT--CTAAACTTAAAAATCCTAACCTA
1 CTTAACTTAAAAACCCTAACCTAATTAAA-TTAAAAACCCTAACCTA
* ** * *
37131394 ATTAACTTAAAAACATTAACCTAATTAACTTACAAACCCTAACCTAA
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCT-A
* *
37131441 TTTAA-TTAAAAACCCTAAACCT-A--AACTTAAAAACCCTAACCTAA
1 CTTAACTTAAAAACCCT-AACCTAATTAAATTAAAAACCCTAACCT-A
* * * * *
37131485 TTTAA--TAAAAACTCTAACCTAATTTAATTAAAAACCGTAAACT-
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTA
* * *
37131528 CTAAACTTAAAAACCCTAACCTAATTTAA-TAAAAACTCTAACCTAA
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCT-A
* * **
37131574 TTTAA-TTAAAAACCCTAAACC---TTAAACCTAAAAACCCTAACCCC
1 CTTAACTTAAAAACCCT-AACCTAATTAAA-TTAAAAACCCTAACCTA
* * *
37131618 CTTAACTTAAAAACCCTAACCTAATTTAATTAAAAACCGTAAACT-
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTA
* * *
37131663 CTAAACTTAAAAACCCTAAACT--CTAAACTTAAAAACCCTAACCTA
1 CTTAACTTAAAAACCCTAACCTAATTAAA-TTAAAAACCCTAACCTA
* * * * *
37131708 ATTAAATTAAAAACCCTAACCTAATTTACTTAGAAACCCTAAACC--
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-AACCTA
* *
37131753 CTAAACTTAAAAACCCTAACCTAATTAAATT-AAAACCTTAAACC--
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-AACCTA
* * *** *
37131797 CTAAACCTAAAAACCCTAACCCCCTTAACTTAAAAACCCTAACCTAA
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCT-A
* * *
37131844 TTTAA-TTAAAAACCCTAAAGCCT-A--AACTTAAAAACCCTAATCTTA
1 CTTAACTTAAAAACCCT-AA-CCTAATTAAATTAAAAACCCTAA-CCTA
* ** * *
37131889 TTTAA-TTAAAAA-ATTAAAACCCT-A--AACTT-AAAACCCTAACATAA
1 CTTAACTTAAAAACCCT--AA-CCTAATTAAATTAAAAACCCTAACCT-A
* * *
37131933 TTTAA-TTAAAAACTCTAAACCCT-A--AACTTAAAAACCCTAACCTA
1 CTTAACTTAAAAACCCT-AA-CCTAATTAAATTAAAAACCCTAACCTA
*
37131977 ATTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTA
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTA
** * * * * *
37132023 AGTAAATTAAAAACCTTAAACCCT-A--AACTTAAAAACCTTAACC-C
1 CTTAACTTAAAAACCCT-AA-CCTAATTAAATTAAAAACCCTAACCTA
37132067 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAA
1 CTTAACTTAAAAACCCTAACCTAATTAAATTAAAA
37132102 NNNNNNNNNN
Statistics
Matches: 1333, Mismatches: 225, Indels: 198
0.76 0.13 0.11
Matches are distributed among these distances:
42 12 0.01
43 77 0.06
44 224 0.17
45 686 0.51
46 239 0.18
47 79 0.06
48 16 0.01
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.26
Consensus pattern (46 bp):
CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTA
Found at i:37135731 original size:125 final size:125
Alignment explanation
Indices: 37135508--37135856 Score: 567
Period size: 123 Copynumber: 2.8 Consensus size: 125
37135498 CAAACATGCT
*
37135508 ACTGTAGGAAAAGCGCATCCACGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTGCT
1 ACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTT-ACAAATTCTTCTCAAATAGCATCCTGCT
* *
37135573 AGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAATTGTTTCTTCCATGATCG
65 AGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTCCATGACCG
* * *
37135634 ACTGTAGCAAAAGCGCTTCCACGAGGGCGCAATTTTACAAATTCTTCTCAAATAGAATCCTGCTA
1 ACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTTACAAATTCTTCTCAAATAGCATCCTGCTA
*
37135699 GAAGCGATTTTATACTATTTGCTCAGAAACGTC--AAAAAAATTATTTCTTCCATGACCT
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTCCATGACCG
* * *
37135757 ACTGTAGCCAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGCTA
1 ACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTTACAAATTCTTCTCAAATAGCATCCTGCTA
* *
37135822 GAAGCGATTCTATACTATTTGATCAGAAACGTCAA
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAA
37135857 CTCGAAATTA
Statistics
Matches: 207, Mismatches: 14, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
123 113 0.55
125 61 0.29
126 33 0.16
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (125 bp):
ACTGTAGCAAAAGCGCATCCACGAGGGCGCGATTTTACAAATTCTTCTCAAATAGCATCCTGCTA
GAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAAATTATTTCTTCCATGACCG
Found at i:37136669 original size:53 final size:53
Alignment explanation
Indices: 37136606--37136766 Score: 166
Period size: 53 Copynumber: 3.2 Consensus size: 53
37136596 GCTATTCACT
*
37136606 TTTTTTAATATAATTATTTCTTAATATATAATATATATATATGAAATATTATC
1 TTTTTAAATATAATTATTTCTTAATATATAATATATATATATGAAATATTATC
* ** * *
37136659 TTTTTAAATATAA--AATT-TT-A-ATATAGCAT-TA-A-A-G--CTATT-CC
1 TTTTTAAATATAATTATTTCTTAATATATAATATATATATATGAAATATTATC
*
37136700 TTTTTTTAATATAATTATTTCTTAATATATAATATATATATATGAAATATTATC
1 -TTTTTAAATATAATTATTTCTTAATATATAATATATATATATGAAATATTATC
37136754 TTTTTAAATATAA
1 TTTTTAAATATAA
37136767 AATTTTAATA
Statistics
Matches: 82, Mismatches: 13, Indels: 26
0.68 0.11 0.21
Matches are distributed among these distances:
41 1 0.01
42 16 0.20
44 4 0.05
45 3 0.04
46 2 0.02
47 9 0.11
48 9 0.11
49 2 0.02
50 3 0.04
51 4 0.05
53 28 0.34
54 1 0.01
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.51
Consensus pattern (53 bp):
TTTTTAAATATAATTATTTCTTAATATATAATATATATATATGAAATATTATC
Found at i:37136793 original size:95 final size:96
Alignment explanation
Indices: 37136593--37136784 Score: 377
Period size: 95 Copynumber: 2.0 Consensus size: 96
37136583 TTTCATAAGG
37136593 AAAGCTATTCACTTTTTTTAATATAATTATTTCTTAATATATAATATATATATATGAAATATTAT
1 AAAGCTATTCACTTTTTTTAATATAATTATTTCTTAATATATAATATATATATATGAAATATTAT
37136658 CTTTTTAAATATAAAATTTTAATATAGCATT
66 CTTTTTAAATATAAAATTTTAATATAGCATT
37136689 AAAGCTATTC-CTTTTTTTAATATAATTATTTCTTAATATATAATATATATATATGAAATATTAT
1 AAAGCTATTCACTTTTTTTAATATAATTATTTCTTAATATATAATATATATATATGAAATATTAT
37136753 CTTTTTAAATATAAAATTTTAATATAGCATT
66 CTTTTTAAATATAAAATTTTAATATAGCATT
37136784 A
1 A
37136785 TTCATATTCA
Statistics
Matches: 96, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
95 86 0.90
96 10 0.10
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.49
Consensus pattern (96 bp):
AAAGCTATTCACTTTTTTTAATATAATTATTTCTTAATATATAATATATATATATGAAATATTAT
CTTTTTAAATATAAAATTTTAATATAGCATT
Found at i:37139601 original size:24 final size:24
Alignment explanation
Indices: 37139574--37139625 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
37139564 AATCACAGTC
* *
37139574 AAATATATTATGCTAATAAATACT
1 AAATACATTATACTAATAAATACT
*
37139598 AAATACATTATACTCATAAATACT
1 AAATACATTATACTAATAAATACT
37139622 AAAT
1 AAAT
37139626 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.52, C:0.12, G:0.02, T:0.35
Consensus pattern (24 bp):
AAATACATTATACTAATAAATACT
Found at i:37143004 original size:21 final size:22
Alignment explanation
Indices: 37142969--37143011 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
37142959 AAAACAGGTT
**
37142969 TTTAGCGGCGTTTTTTA-TGCC
1 TTTAGCGGCACTTTTTAGTGCC
37142990 TTTAGCGGCACTTTTTAGTGCC
1 TTTAGCGGCACTTTTTAGTGCC
37143012 GCTAAAAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.12, C:0.21, G:0.23, T:0.44
Consensus pattern (22 bp):
TTTAGCGGCACTTTTTAGTGCC
Found at i:37143130 original size:42 final size:43
Alignment explanation
Indices: 37143069--37143160 Score: 143
Period size: 42 Copynumber: 2.2 Consensus size: 43
37143059 TGTTGCTAAT
*
37143069 GCCGCTATAGATCAGGACCTTTAGCGGCGC-TTCCCCACAAAC
1 GCCGCTATAGATCAGGACCTTTAGCGGCGCTTTCCACACAAAC
*
37143111 GCCGCTATAGATACA-GACCTTTAGCGGCGCTTTTCACACAAAC
1 GCCGCTATAGAT-CAGGACCTTTAGCGGCGCTTTCCACACAAAC
37143154 GCCGCTA
1 GCCGCTA
37143161 NNNNNNNNNN
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
42 27 0.59
43 19 0.41
ACGTcount: A:0.25, C:0.34, G:0.21, T:0.21
Consensus pattern (43 bp):
GCCGCTATAGATCAGGACCTTTAGCGGCGCTTTCCACACAAAC
Found at i:37147366 original size:15 final size:15
Alignment explanation
Indices: 37147342--37147376 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
37147332 TCCCAACCTT
*
37147342 TAAA-CCATAATCCC
1 TAAACCCATAATCCA
37147356 TAAACCCATAATCCA
1 TAAACCCATAATCCA
37147371 TAAACC
1 TAAACC
37147377 TTAAAATGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.46, C:0.34, G:0.00, T:0.20
Consensus pattern (15 bp):
TAAACCCATAATCCA
Found at i:37147395 original size:37 final size:36
Alignment explanation
Indices: 37147354--37147466 Score: 103
Period size: 37 Copynumber: 3.2 Consensus size: 36
37147344 AACCATAATC
37147354 CCTAAACCCATAATCCATAAACCTTAAAATGGCAACA
1 CCTAAACCCA-AATCCATAAACCTTAAAATGGCAACA
* * * * *
37147391 CCTAAA-CC--ATGCATATACCCT-AAA--CCAAAGA
1 CCTAAACCCAAATCCATAAACCTTAAAATGGC-AACA
*
37147422 CCTAAACCCAGAATCCATAAACCTTAAAATGGTAACA
1 CCTAAACCCA-AATCCATAAACCTTAAAATGGCAACA
37147459 CCTAAACC
1 CCTAAACC
37147467 TATTTAAACC
Statistics
Matches: 57, Mismatches: 11, Indels: 16
0.68 0.13 0.19
Matches are distributed among these distances:
30 1 0.02
31 9 0.16
32 5 0.09
33 10 0.18
35 10 0.18
36 5 0.09
37 17 0.30
ACGTcount: A:0.45, C:0.31, G:0.06, T:0.18
Consensus pattern (36 bp):
CCTAAACCCAAATCCATAAACCTTAAAATGGCAACA
Found at i:37147785 original size:41 final size:41
Alignment explanation
Indices: 37147728--37148109 Score: 692
Period size: 41 Copynumber: 9.3 Consensus size: 41
37147718 CTAAATACCC
37147728 AACGCCGCTAAAGGCCTGGCCATTAGCGGCGCTTTCACAAA
1 AACGCCGCTAAAGGCCTGGCCATTAGCGGCGCTTTCACAAA
37147769 AACGCCGCTAAAGGCCTGGCCATTAGCGGCGCTTTCACAAA
1 AACGCCGCTAAAGGCCTGGCCATTAGCGGCGCTTTCACAAA
37147810 AACGCCGCTAAAGGCCTGGCCATTAGCGGCGCTTTCACAAA
1 AACGCCGCTAAAGGCCTGGCCATTAGCGGCGCTTTCACAAA
37147851 AACGCCGCTAAAGGCCTGGCCATTAGCGGCGCTTTCACAAA
1 AACGCCGCTAAAGGCCTGGCCATTAGCGGCGCTTTCACAAA
37147892 AACGCCGCTAAAGGCCTGGCCATTAGCGGCGCTTTCACAAA
1 AACGCCGCTAAAGGCCTGGCCATTAGCGGCGCTTTCACAAA
37147933 AACGCCGCTAAAGGCCTGGCCATTAGCGGCGCTTTCACAAA
1 AACGCCGCTAAAGGCCTGGCCATTAGCGGCGCTTTCACAAA
*
37147974 AACGCCGCTAAAGGCCTGGACATTAGCGGCGCTTTCACAAA
1 AACGCCGCTAAAGGCCTGGCCATTAGCGGCGCTTTCACAAA
* * * *
37148015 AACGCCACTAAAGGCCTGGGCATTAGCGGCACTTCCACAAA
1 AACGCCGCTAAAGGCCTGGCCATTAGCGGCGCTTTCACAAA
* *
37148056 AACGCCGCTAAAGGCCTGGGGCATTAGCGGCGCTTTCCCAAA
1 AACGCCGCTAAAGGCCT-GGCCATTAGCGGCGCTTTCACAAA
37148098 AACGCCGCTAAA
1 AACGCCGCTAAA
37148110 TCCCCAAAAG
Statistics
Matches: 331, Mismatches: 9, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
41 298 0.90
42 33 0.10
ACGTcount: A:0.28, C:0.31, G:0.24, T:0.16
Consensus pattern (41 bp):
AACGCCGCTAAAGGCCTGGCCATTAGCGGCGCTTTCACAAA
Found at i:37148191 original size:39 final size:38
Alignment explanation
Indices: 37148147--37148224 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 38
37148137 TTGGGCTTAG
37148147 ATTTTTTGCGGCGTTTT-ATTGAAAACGCCGCTAATGCTT
1 ATTTTTTGCGGCGTTTTCA-T-AAAACGCCGCTAATGCTT
*
37148186 ATTTTTTGCGGCGTTTTCCATAAAGCGCCGCTAATGCTT
1 ATTTTTTGCGGCGTTTT-CATAAAACGCCGCTAATGCTT
37148225 GATCTTTAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
39 34 0.94
40 1 0.03
41 1 0.03
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (38 bp):
ATTTTTTGCGGCGTTTTCATAAAACGCCGCTAATGCTT
Found at i:37148396 original size:151 final size:152
Alignment explanation
Indices: 37148212--37148515 Score: 592
Period size: 151 Copynumber: 2.0 Consensus size: 152
37148202 TCCATAAAGC
37148212 GCCGCTAATGCTTGATCTTTAGAGGCATTTTTTATCCAAACGCCACTAAAAATGCCGCTAAAAGC
1 GCCGCTAATGC-TGATCTTTAGAGGCATTTTTTATCCAAACGCCACTAAAAATGCCGCTAAAAGC
37148277 CTGTTTTGGTGTAGTGATGGAGTGCCTCTGAGTTGATATAAGAGAAATGGAACTTTGGTTACTGC
65 CTGTTTTGGTGTAGTGATGGAGTGCCTCTGAGTTGATATAAGAGAAATGGAACTTTGGTTACTGC
37148342 CTGATCGAACTTAGTAATCGCGT
130 CTGATCGAACTTAGTAATCGCGT
37148365 GCCGCTAATG-TGATCTTTAGAGGCATTTTTTATCCAAACGCCACTAAAAATGCCGCTAAAAGCC
1 GCCGCTAATGCTGATCTTTAGAGGCATTTTTTATCCAAACGCCACTAAAAATGCCGCTAAAAGCC
37148429 TGTTTTGGTGTAGTGATGGAGTGCCTCTGAGTTGATATAAGAGAAATGGAACTTTGGTTACTGCC
66 TGTTTTGGTGTAGTGATGGAGTGCCTCTGAGTTGATATAAGAGAAATGGAACTTTGGTTACTGCC
37148494 TGATCGAACTTAGTAATCGCGT
131 TGATCGAACTTAGTAATCGCGT
37148516 AGGATATGAT
Statistics
Matches: 151, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
151 141 0.93
153 10 0.07
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (152 bp):
GCCGCTAATGCTGATCTTTAGAGGCATTTTTTATCCAAACGCCACTAAAAATGCCGCTAAAAGCC
TGTTTTGGTGTAGTGATGGAGTGCCTCTGAGTTGATATAAGAGAAATGGAACTTTGGTTACTGCC
TGATCGAACTTAGTAATCGCGT
Found at i:37150807 original size:13 final size:13
Alignment explanation
Indices: 37150789--37150822 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
37150779 CTAAAAAATA
*
37150789 AAAATAAGTAATT
1 AAAATAAATAATT
37150802 AAAATAAATAATT
1 AAAATAAATAATT
*
37150815 AAGATAAA
1 AAAATAAA
37150823 AAATAATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (13 bp):
AAAATAAATAATT
Found at i:37150828 original size:16 final size:15
Alignment explanation
Indices: 37150784--37150837 Score: 56
Period size: 16 Copynumber: 3.5 Consensus size: 15
37150774 CAAATCTAAA
*
37150784 AAAT-AAAAATAAGT
1 AAATAAAAAATAATT
*
37150798 AATTAAAATAAATAATT
1 AAAT-AAA-AAATAATT
37150815 AAGATAAAAAATAATT
1 AA-ATAAAAAATAATT
37150831 AAATAAA
1 AAATAAA
37150838 TCAAATATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
14 3 0.09
15 5 0.15
16 12 0.36
17 12 0.36
18 1 0.03
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.26
Consensus pattern (15 bp):
AAATAAAAAATAATT
Found at i:37155054 original size:122 final size:122
Alignment explanation
Indices: 37154899--37155132 Score: 468
Period size: 122 Copynumber: 1.9 Consensus size: 122
37154889 ATGTCCATCA
37154899 AGATCTAGATAAATTTTGATATACTTTAAATTCTAATAGTCATTAGAAGTAGATCTCTACTTCAT
1 AGATCTAGATAAATTTTGATATACTTTAAATTCTAATAGTCATTAGAAGTAGATCTCTACTTCAT
37154964 TTATACTTCTTATACCTATAAATAGAGATTTTGGAGAAGCATTGTATGTGGATGTCC
66 TTATACTTCTTATACCTATAAATAGAGATTTTGGAGAAGCATTGTATGTGGATGTCC
37155021 AGATCTAGATAAATTTTGATATACTTTAAATTCTAATAGTCATTAGAAGTAGATCTCTACTTCAT
1 AGATCTAGATAAATTTTGATATACTTTAAATTCTAATAGTCATTAGAAGTAGATCTCTACTTCAT
37155086 TTATACTTCTTATACCTATAAATAGAGATTTTGGAGAAGCATTGTAT
66 TTATACTTCTTATACCTATAAATAGAGATTTTGGAGAAGCATTGTAT
37155133 ATATCTCATT
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
122 112 1.00
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.40
Consensus pattern (122 bp):
AGATCTAGATAAATTTTGATATACTTTAAATTCTAATAGTCATTAGAAGTAGATCTCTACTTCAT
TTATACTTCTTATACCTATAAATAGAGATTTTGGAGAAGCATTGTATGTGGATGTCC
Found at i:37156995 original size:14 final size:14
Alignment explanation
Indices: 37156970--37157041 Score: 81
Period size: 14 Copynumber: 5.1 Consensus size: 14
37156960 CATGTATGAG
37156970 TATCTGTATCTGTA
1 TATCTGTATCTGTA
* *
37156984 TTTCTGTGTCTGTA
1 TATCTGTATCTGTA
**
37156998 TATCTGTATCCCTA
1 TATCTGTATCTGTA
*
37157012 TATCTGTATTTGTA
1 TATCTGTATCTGTA
* *
37157026 TTTCTATATCTGTA
1 TATCTGTATCTGTA
37157040 TA
1 TA
37157042 CGGGGCGACA
Statistics
Matches: 45, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
14 45 1.00
ACGTcount: A:0.19, C:0.15, G:0.12, T:0.53
Consensus pattern (14 bp):
TATCTGTATCTGTA
Found at i:37159958 original size:37 final size:38
Alignment explanation
Indices: 37159892--37159972 Score: 146
Period size: 37 Copynumber: 2.2 Consensus size: 38
37159882 TCGATATGAT
*
37159892 TTGAACATATTTGGTAAATTTAACTTAATCAATAGTAG
1 TTGAAAATATTTGGTAAATTTAACTTAATCAATAGTAG
37159930 TTGAAAATATTTGGT-AATTTAACTTAATCAATAGTAG
1 TTGAAAATATTTGGTAAATTTAACTTAATCAATAGTAG
37159967 TTGAAA
1 TTGAAA
37159973 TAGGATTATA
Statistics
Matches: 42, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
37 28 0.67
38 14 0.33
ACGTcount: A:0.41, C:0.06, G:0.14, T:0.40
Consensus pattern (38 bp):
TTGAAAATATTTGGTAAATTTAACTTAATCAATAGTAG
Found at i:37160714 original size:2 final size:2
Alignment explanation
Indices: 37160707--37160734 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
37160697 TTTCCATTAA
37160707 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37160735 TTGGAGTAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37163575 original size:105 final size:106
Alignment explanation
Indices: 37163443--37163656 Score: 421
Period size: 105 Copynumber: 2.0 Consensus size: 106
37163433 AATGTTAGAA
37163443 TATTTTTAAATATTTTAAGTTGTTCAAGAGTTTTATATTTTTTTAGTCAATAAGAAAGCTTAGTT
1 TATTTTTAAATATTTTAAGTTGTTCAAGAGTTTTATATTTTTTTAGTCAATAAGAAAGCTTAGTT
37163508 CTATTAGAACTACTTCTAGTTTAGATTAACTAGAGTTTCAT
66 CTATTAGAACTACTTCTAGTTTAGATTAACTAGAGTTTCAT
37163549 TATTTTTAAATA-TTTAAGTTGTTCAAGAGTTTTATATTTTTTTAGTCAATAAGAAAGCTTAGTT
1 TATTTTTAAATATTTTAAGTTGTTCAAGAGTTTTATATTTTTTTAGTCAATAAGAAAGCTTAGTT
37163613 CTATTAGAACTACTTCTAGTTTAGATTAACTAGAGTTTCAT
66 CTATTAGAACTACTTCTAGTTTAGATTAACTAGAGTTTCAT
37163654 TAT
1 TAT
37163657 ACTTACGAGC
Statistics
Matches: 108, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
105 96 0.89
106 12 0.11
ACGTcount: A:0.32, C:0.08, G:0.12, T:0.47
Consensus pattern (106 bp):
TATTTTTAAATATTTTAAGTTGTTCAAGAGTTTTATATTTTTTTAGTCAATAAGAAAGCTTAGTT
CTATTAGAACTACTTCTAGTTTAGATTAACTAGAGTTTCAT
Found at i:37163772 original size:25 final size:26
Alignment explanation
Indices: 37163744--37163801 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
37163734 CACTTTTGAG
37163744 TTAATAAAA-TTCT-TTGAGT-TTTCTT
1 TTAA-AAAATTTCTCTTGAGTCTTT-TT
37163769 TTAAAAAATTTCTCTTGAGTCTTTTT
1 TTAAAAAATTTCTCTTGAGTCTTTTT
37163795 TTAAAAA
1 TTAAAAA
37163802 TTTAACAATC
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
24 4 0.13
25 8 0.27
26 15 0.50
27 3 0.10
ACGTcount: A:0.33, C:0.09, G:0.07, T:0.52
Consensus pattern (26 bp):
TTAAAAAATTTCTCTTGAGTCTTTTT
Found at i:37164841 original size:20 final size:21
Alignment explanation
Indices: 37164816--37164855 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
37164806 TGTCTTTATC
*
37164816 AATTTT-TATATAAATTTTAA
1 AATTTTCTAAATAAATTTTAA
*
37164836 AATTTTCTAAATAAGTTTTA
1 AATTTTCTAAATAAATTTTA
37164856 CTAATTTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (21 bp):
AATTTTCTAAATAAATTTTAA
Found at i:37166577 original size:10 final size:10
Alignment explanation
Indices: 37166559--37166587 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
37166549 AGAGCCTTTG
37166559 AGAGC-AAAA
1 AGAGCGAAAA
37166568 AGAGCGAAAA
1 AGAGCGAAAA
37166578 AGAGCGAAAA
1 AGAGCGAAAA
37166588 CTGGAAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 5 0.26
10 14 0.74
ACGTcount: A:0.62, C:0.10, G:0.28, T:0.00
Consensus pattern (10 bp):
AGAGCGAAAA
Found at i:37169130 original size:13 final size:13
Alignment explanation
Indices: 37169112--37169137 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37169102 GGGTGTAGGC
37169112 CCACATGGGCATG
1 CCACATGGGCATG
37169125 CCACATGGGCATG
1 CCACATGGGCATG
37169138 TAGGTTTTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.31, T:0.15
Consensus pattern (13 bp):
CCACATGGGCATG
Found at i:37171887 original size:21 final size:22
Alignment explanation
Indices: 37171832--37171888 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 22
37171822 TATTAGGTTA
* *
37171832 ATTGAATTGGTATGTTTATATGTG
1 ATTGAA-T-GTATGTTTAAATCTG
*
37171856 ATTGAA-ATATGTTTAAATCT-
1 ATTGAATGTATGTTTAAATCTG
37171876 ATTGAATGTATGT
1 ATTGAATGTATGT
37171889 ACAAATAGAG
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
20 6 0.21
21 16 0.57
24 6 0.21
ACGTcount: A:0.32, C:0.02, G:0.19, T:0.47
Consensus pattern (22 bp):
ATTGAATGTATGTTTAAATCTG
Found at i:37173030 original size:358 final size:354
Alignment explanation
Indices: 37172371--37173078 Score: 1087
Period size: 358 Copynumber: 2.0 Consensus size: 354
37172361 TTTTAATTTT
*
37172371 TCCTTAGATTTTTTGAATTATTTCAAACTAGTCCCGTTTTGATCCCGAAATATTTTTAGGGCCTC
1 TCCTTAGATTTTCTGAATTATTTCAAACTAGTCCCGTTTTGATCCCGAAATATTTTTAGGGCCTC
* *
37172436 GAAATTTTAATTTAAGGCCTAAATGTTTATGTTGGATTTGTATGAGGTTTAAAAAATTAATATTG
66 GAAAATTTAATTTAAGGCCAAAATGTTTATGTTGGATTTGTATGAGGTTTAAAAAATTAATATTG
* **
37172501 AATAGCATTATTAAACTGTTTAAATGTTAATTGTTCTAATTTTTACAGTAATGCTCTGTAACCCT
131 AATAACATTATTAAACTGTTTAAATGTTAATTGTTCTAATTTTTACAGTAATGCTCCATAACCCT
* * *
37172566 AGACCGGCGACGGAAACAGGTTAGGGGTGTTATATTAGGTCGACCTTTTATAGCCACTGCTAGAA
196 AGACCGGCAACGGAAACAGGTTAGGGGTGTTACATTAGGTCGACCCTTTATAGCCACTGCTAGAA
* *
37172631 CTATTATTGATATGGGTACTGGTGAACTTGTGCTTGTGTAGGTGATGAAAAGATTACTTTTCAAG
261 CTATTATTGATATGGGTACTGGTGAACTTGTGCTTGTGTAGGTGATAAAAAGATTACTCTTCAAG
37172696 CACATGATTTTGTGAGAGTCCCTAGAGAA
326 CACATGATTTTGTGAGAGTCCCTAGAGAA
* *
37172725 TCCTTAGATTTTCTGAATTATTTCAAATTAGTCCCGTTTTGATCTC-AAACTATTTTTAGGGCCT
1 TCCTTAGATTTTCTGAATTATTTCAAACTAGTCCCGTTTTGATCCCGAAA-TATTTTTAGGGCCT
* * *
37172789 CGAAAATTTAATTTAAGGCCCAAATATGTATATTTGTTGGATTTTTATGAGGTTTAAATAATTAA
65 CGAAAATTTAATTTAAGG-CCAAA-ATGT-T-TATGTTGGATTTGTATGAGGTTTAAAAAATTAA
* * * *
37172854 TGTTGAATAACATTATTAAATTGTTTAGATGTTAATTGTTCTAATTTTTACGGTAATGCTCCATA
126 TATTGAATAACATTATTAAACTGTTTAAATGTTAATTGTTCTAATTTTTACAGTAATGCTCCATA
** * * *
37172919 ACCCTAGACTTGCAACGGAAACGGGTTAGGGGTGTTACATTAGTTCTACCCTTT-TAGCCACTGC
191 ACCCTAGACCGGCAACGGAAACAGGTTAGGGGTGTTACATTAGGTCGACCCTTTATAGCCACTGC
* * *
37172983 TAGAATTGTTATTGATATGGGTACTGGTGAACTTGTGCTTCGTGTAGGTGATAAAAATATTACTC
256 TAGAACTATTATTGATATGGGTACTGGTGAACTTGTGCTT-GTGTAGGTGATAAAAAGATTACTC
*
37173048 TTCAAGCACGTGATTTTGTGAGAGTCCCTAG
320 TTCAAGCACATGATTTTGTGAGAGTCCCTAG
37173079 TCAGCGAGAT
Statistics
Matches: 319, Mismatches: 29, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
353 3 0.01
354 74 0.23
355 4 0.01
356 4 0.01
357 49 0.15
358 185 0.58
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (354 bp):
TCCTTAGATTTTCTGAATTATTTCAAACTAGTCCCGTTTTGATCCCGAAATATTTTTAGGGCCTC
GAAAATTTAATTTAAGGCCAAAATGTTTATGTTGGATTTGTATGAGGTTTAAAAAATTAATATTG
AATAACATTATTAAACTGTTTAAATGTTAATTGTTCTAATTTTTACAGTAATGCTCCATAACCCT
AGACCGGCAACGGAAACAGGTTAGGGGTGTTACATTAGGTCGACCCTTTATAGCCACTGCTAGAA
CTATTATTGATATGGGTACTGGTGAACTTGTGCTTGTGTAGGTGATAAAAAGATTACTCTTCAAG
CACATGATTTTGTGAGAGTCCCTAGAGAA
Found at i:37174340 original size:5 final size:6
Alignment explanation
Indices: 37174325--37174409 Score: 62
Period size: 6 Copynumber: 13.7 Consensus size: 6
37174315 TATTTCTATT
* * * * *
37174325 TTTTTG TTTTTG TTTTTA TTTCTA TTTATG TTTTTCTG TTTTTC TTCTTTG
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG -TTTT-TG TTTTTG TT-TTTG
* * * *
37174376 TTTTTG CTTTTG CTTTTG TTTTTA TTTTTA TTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTT
37174410 ATTATGCACT
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
6 52 0.79
7 12 0.18
8 2 0.03
ACGTcount: A:0.06, C:0.07, G:0.09, T:0.78
Consensus pattern (6 bp):
TTTTTG
Found at i:37174347 original size:26 final size:26
Alignment explanation
Indices: 37174315--37174404 Score: 78
Period size: 26 Copynumber: 3.5 Consensus size: 26
37174305 TTTCTATTTC
37174315 TATTTCTATTTTTTTGTTTTTGTTTT
1 TATTTCTATTTTTTTGTTTTTGTTTT
* *
37174341 TATTTCTATTTATGTT-TTTCTGTTTT
1 TATTTCTATTT-TTTTGTTTTTGTTTT
* * *
37174367 T-CTTCT-TTGTTTTTGCTTTTGCTTT
1 TATTTCTATT-TTTTTGTTTTTGTTTT
* *
37174392 TGTTTTTATTTTT
1 TATTTCTATTTTT
37174405 ATTTTATTAT
Statistics
Matches: 50, Mismatches: 9, Indels: 10
0.72 0.13 0.14
Matches are distributed among these distances:
24 5 0.10
25 13 0.26
26 27 0.54
27 5 0.10
ACGTcount: A:0.07, C:0.08, G:0.09, T:0.77
Consensus pattern (26 bp):
TATTTCTATTTTTTTGTTTTTGTTTT
Found at i:37174367 original size:38 final size:39
Alignment explanation
Indices: 37174301--37174380 Score: 99
Period size: 38 Copynumber: 2.1 Consensus size: 39
37174291 TTATATTTTA
* * *
37174301 TTTATTTCTATTTCTATTTCTATTTTTTTGTT-TTTGTT
1 TTTATTTCTATTTATATTTCTATGTTTTTCTTCTTTGTT
* * *
37174339 TTTATTTCTATTTATGTTTTTCTGTTTTTCTTCTTTGTT
1 TTTATTTCTATTTATATTTCTATGTTTTTCTTCTTTGTT
37174378 TTT
1 TTT
37174381 GCTTTTGCTT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
38 26 0.74
39 9 0.26
ACGTcount: A:0.09, C:0.09, G:0.06, T:0.76
Consensus pattern (39 bp):
TTTATTTCTATTTATATTTCTATGTTTTTCTTCTTTGTT
Found at i:37184315 original size:27 final size:28
Alignment explanation
Indices: 37184264--37184323 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 28
37184254 AATAAACACC
37184264 AAAAAAATATTTTAAATATAAAAAGAAT
1 AAAAAAATATTTTAAATATAAAAAGAAT
*
37184292 AAAAAAAGTATTTTAAA-AT-TAAAGAAT
1 AAAAAAA-TATTTTAAATATAAAAAGAAT
37184319 AAAAA
1 AAAAA
37184324 TTATTTATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
27 12 0.40
28 9 0.30
29 9 0.30
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (28 bp):
AAAAAAATATTTTAAATATAAAAAGAAT
Found at i:37185233 original size:17 final size:16
Alignment explanation
Indices: 37185188--37185235 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
37185178 AATTGACATT
*
37185188 TTATTTAAATTTTTTA
1 TTATTTCAATTTTTTA
*
37185204 TTATTTGC-TTTTTTTA
1 TTATTT-CAATTTTTTA
37185220 TATATTTCAATTTTTT
1 T-TATTTCAATTTTTT
37185236 TTTAAAAGGT
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
16 15 0.58
17 11 0.42
ACGTcount: A:0.23, C:0.04, G:0.02, T:0.71
Consensus pattern (16 bp):
TTATTTCAATTTTTTA
Found at i:37185709 original size:9 final size:9
Alignment explanation
Indices: 37185695--37185727 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
37185685 TTAAGAAATA
37185695 TAAAATATC
1 TAAAATATC
37185704 TAAAAT-TC
1 TAAAATATC
37185712 TTAAAATATC
1 -TAAAATATC
37185722 TAAAAT
1 TAAAAT
37185728 TCAGAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 2 0.09
9 18 0.82
10 2 0.09
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (9 bp):
TAAAATATC
Found at i:37185718 original size:18 final size:18
Alignment explanation
Indices: 37185695--37185729 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
37185685 TTAAGAAATA
37185695 TAAAATATCTAAAATTCT
1 TAAAATATCTAAAATTCT
37185713 TAAAATATCTAAAATTC
1 TAAAATATCTAAAATTC
37185730 AGAATAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.11, G:0.00, T:0.37
Consensus pattern (18 bp):
TAAAATATCTAAAATTCT
Found at i:37188950 original size:25 final size:25
Alignment explanation
Indices: 37188916--37188970 Score: 110
Period size: 25 Copynumber: 2.2 Consensus size: 25
37188906 TTGAATGATA
37188916 AAGAATGAATTCCCATGACTCCTTG
1 AAGAATGAATTCCCATGACTCCTTG
37188941 AAGAATGAATTCCCATGACTCCTTG
1 AAGAATGAATTCCCATGACTCCTTG
37188966 AAGAA
1 AAGAA
37188971 AATTGAGAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.25
Consensus pattern (25 bp):
AAGAATGAATTCCCATGACTCCTTG
Found at i:37192458 original size:18 final size:18
Alignment explanation
Indices: 37192420--37192490 Score: 60
Period size: 18 Copynumber: 4.1 Consensus size: 18
37192410 AAATCGGGAT
37192420 AATGATATTGAAATGGAA
1 AATGATATTGAAATGGAA
* *
37192438 AATTATATTGAAGT-GACA
1 AATGATATTGAAATGGA-A
*
37192456 AATGATA-TGGAAT-G-A
1 AATGATATTGAAATGGAA
*
37192471 AATGAAATGTGAAATGGAA
1 AATGATAT-TGAAATGGAA
37192490 A
1 A
37192491 TCAAAATGGT
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
15 7 0.17
17 12 0.29
18 20 0.49
19 2 0.05
ACGTcount: A:0.49, C:0.01, G:0.23, T:0.27
Consensus pattern (18 bp):
AATGATATTGAAATGGAA
Found at i:37193596 original size:30 final size:30
Alignment explanation
Indices: 37193561--37193620 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
37193551 CCTGGCACAT
* * *
37193561 GGTCGTGTGCCATACATGGGCTTATGGCAC
1 GGTCGTCTGCCATACACGAGCTTATGGCAC
37193591 GGTCGTCTGCCATACACGAGCTTATGGCAC
1 GGTCGTCTGCCATACACGAGCTTATGGCAC
37193621 AACCGTTTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.18, C:0.27, G:0.30, T:0.25
Consensus pattern (30 bp):
GGTCGTCTGCCATACACGAGCTTATGGCAC
Found at i:37194698 original size:13 final size:13
Alignment explanation
Indices: 37194680--37194704 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37194670 TCCATTGGCT
37194680 TTTCTAATAAAGG
1 TTTCTAATAAAGG
37194693 TTTCTAATAAAG
1 TTTCTAATAAAG
37194705 CAACTTAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (13 bp):
TTTCTAATAAAGG
Found at i:37195121 original size:21 final size:21
Alignment explanation
Indices: 37195081--37195121 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37195071 GCATGAATTT
*
37195081 AATTATTTGAAATTTACAATG
1 AATTATTTAAAATTTACAATG
37195102 AATTATTTTAAAATTT-CAAT
1 AATTA-TTTAAAATTTACAAT
37195122 TAACAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (21 bp):
AATTATTTAAAATTTACAATG
Found at i:37198848 original size:19 final size:19
Alignment explanation
Indices: 37198824--37198860 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
37198814 TAACATGGAA
37198824 TTAAAC-ATACATACCACAT
1 TTAAACTAT-CATACCACAT
37198843 TTAAACTATCATACCACA
1 TTAAACTATCATACCACA
37198861 ACATCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.46, C:0.27, G:0.00, T:0.27
Consensus pattern (19 bp):
TTAAACTATCATACCACAT
Found at i:37199380 original size:34 final size:33
Alignment explanation
Indices: 37199335--37199454 Score: 170
Period size: 34 Copynumber: 3.5 Consensus size: 33
37199325 ACATGATTAA
37199335 CCATCCAACACACTAAATGCTCGTATGAGCTAAT
1 CCATCC-ACACACTAAATGCTCGTATGAGCTAAT
37199369 CCATCCGACACACTAAATGCTCGTATGTA-CTAAT
1 CCATCC-ACACACTAAATGCTCGTATG-AGCTAAT
*
37199403 CCATCCAGCACACCAAATGCTCGTATGAGCTAAT
1 CCATCCA-CACACTAAATGCTCGTATGAGCTAAT
*
37199437 CCATCCAGCACACCAAAT
1 CCATCCA-CACACTAAAT
37199455 AACACTATAA
Statistics
Matches: 81, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
33 2 0.02
34 78 0.96
35 1 0.01
ACGTcount: A:0.34, C:0.33, G:0.12, T:0.22
Consensus pattern (33 bp):
CCATCCACACACTAAATGCTCGTATGAGCTAAT
Found at i:37207220 original size:27 final size:27
Alignment explanation
Indices: 37207166--37207220 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
37207156 AATATATAAT
*
37207166 AATTATTAAATAATTAAATTGTACTTA
1 AATTATTAAATAATTAAATTGTAATTA
* *
37207193 AATTATTAACAT-ATTTAATTTTAATTA
1 AATTATTAA-ATAATTAAATTGTAATTA
37207220 A
1 A
37207221 TTTTATAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 22 0.92
28 2 0.08
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (27 bp):
AATTATTAAATAATTAAATTGTAATTA
Found at i:37215591 original size:25 final size:26
Alignment explanation
Indices: 37215538--37215591 Score: 67
Period size: 25 Copynumber: 2.1 Consensus size: 26
37215528 TTCTCCTGAA
* *
37215538 TTTCAATTTTATTTAATTATTTAATT
1 TTTCAATTTTATTGAATTAGTTAATT
37215564 TTTCAA-TTTATTGAATT-GTTAATAT
1 TTTCAATTTTATTGAATTAGTTAAT-T
37215589 TTT
1 TTT
37215592 ATACTAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 5 0.20
25 14 0.56
26 6 0.24
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.63
Consensus pattern (26 bp):
TTTCAATTTTATTGAATTAGTTAATT
Found at i:37221037 original size:40 final size:40
Alignment explanation
Indices: 37220993--37221073 Score: 144
Period size: 40 Copynumber: 2.0 Consensus size: 40
37220983 TTTTTCCAGC
* *
37220993 CTTAACTTGAGTTCTTTAACCCTCCTAATCAACTTTTAAA
1 CTTAAATTGAGTTCTTTAACCCTCCTAATCAACCTTTAAA
37221033 CTTAAATTGAGTTCTTTAACCCTCCTAATCAACCTTTAAA
1 CTTAAATTGAGTTCTTTAACCCTCCTAATCAACCTTTAAA
37221073 C
1 C
37221074 CCATTTCAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.31, C:0.26, G:0.05, T:0.38
Consensus pattern (40 bp):
CTTAAATTGAGTTCTTTAACCCTCCTAATCAACCTTTAAA
Found at i:37225040 original size:16 final size:17
Alignment explanation
Indices: 37225019--37225052 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
37225009 AATCATGTCT
37225019 ATAGCTAGCCATT-TCA
1 ATAGCTAGCCATTATCA
*
37225035 ATAGCTAGTCATTATCA
1 ATAGCTAGCCATTATCA
37225052 A
1 A
37225053 ATATTTACAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (17 bp):
ATAGCTAGCCATTATCA
Found at i:37228969 original size:19 final size:19
Alignment explanation
Indices: 37228909--37228970 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
37228899 TAAAAAAAAA
*
37228909 TTTTACAACTTTT-TAATAT
1 TTTTACAATTTTTATAAT-T
*
37228928 TTTTA-ATATATTTTA-AATA
1 TTTTACA-AT-TTTTATAATT
37228947 TTTTACAATTTTTATAATT
1 TTTTACAATTTTTATAATT
37228966 TTTTA
1 TTTTA
37228971 AGTTTTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
18 6 0.17
19 21 0.60
20 8 0.23
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTTACAATTTTTATAATT
Found at i:37235257 original size:19 final size:20
Alignment explanation
Indices: 37235235--37235274 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
37235225 AAAAATATTA
37235235 ACTC-TTTTAAATA-ATAAAT
1 ACTCTTTTTAAA-ACATAAAT
37235254 ACTCTTTTTAAAACATAAAT
1 ACTCTTTTTAAAACATAAAT
37235274 A
1 A
37235275 TTAACTTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.47, C:0.12, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTCTTTTTAAAACATAAAT
Found at i:37236604 original size:5 final size:5
Alignment explanation
Indices: 37236594--37236621 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
37236584 TTTTCACCCA
37236594 AAACC AAACC AAACC AAACC AAACC AAA
1 AAACC AAACC AAACC AAACC AAACC AAA
37236622 ACCTTTTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.64, C:0.36, G:0.00, T:0.00
Consensus pattern (5 bp):
AAACC
Found at i:37242700 original size:33 final size:35
Alignment explanation
Indices: 37242637--37242717 Score: 96
Period size: 36 Copynumber: 2.3 Consensus size: 35
37242627 ATTATATATG
* *
37242637 CATTATTATTTATTAGCATGATTATGATTTTATTCT
1 CATTATTATTTACTAGCATGAGTATGATTTTATT-T
37242673 CATTATTATTTACTAGCATG-GT-T-ATTTTATTT
1 CATTATTATTTACTAGCATGAGTATGATTTTATTT
*
37242705 TATTATTTATTTA
1 CATTA-TTATTTA
37242718 TTTATTATTC
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
32 5 0.12
33 15 0.37
34 1 0.02
35 1 0.02
36 19 0.46
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.58
Consensus pattern (35 bp):
CATTATTATTTACTAGCATGAGTATGATTTTATTT
Found at i:37248466 original size:17 final size:17
Alignment explanation
Indices: 37248444--37248481 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
37248434 CCCAAGGTGC
37248444 TCAACCACCATACCGAA
1 TCAACCACCATACCGAA
* *
37248461 TCAACCATCATACTGAA
1 TCAACCACCATACCGAA
37248478 TCAA
1 TCAA
37248482 ATCTTTTAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.34, G:0.05, T:0.18
Consensus pattern (17 bp):
TCAACCACCATACCGAA
Found at i:37250580 original size:21 final size:21
Alignment explanation
Indices: 37250556--37250606 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
37250546 TTCTTTTGAA
*
37250556 CCTCTGCTTCTCTCGCTGCAG
1 CCTCTGCTTCCCTCGCTGCAG
* *
37250577 CCTCTACTTCCCTCGCTGCCG
1 CCTCTGCTTCCCTCGCTGCAG
37250598 CCTCTGCTT
1 CCTCTGCTT
37250607 TAAGTTGTAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.04, C:0.47, G:0.16, T:0.33
Consensus pattern (21 bp):
CCTCTGCTTCCCTCGCTGCAG
Found at i:37250659 original size:87 final size:87
Alignment explanation
Indices: 37250491--37250650 Score: 239
Period size: 87 Copynumber: 1.8 Consensus size: 87
37250481 TTTTGCTCTG
* * *
37250491 CTCTGCTTCTCTCGATGCCGCATCTACTTTAAGTTGTAGCTGGAGTTCTTCATATTTCTTTTGAA
1 CTCTACTTCCCTCGATGCCGCATCTACTTTAAGTTGTAGCTGGAGTTCTTCATATTTCCTTTGAA
** *
37250556 CCTCTGCTTCTCTCGCTGCAGC
66 CCTCAACTTCGCTCGCTGCAGC
* * *
37250578 CTCTACTTCCCTCGCTGCCGCCTCTGCTTTAAGTTGTAGCTGGAGTTCTTCATATTTCCTTTGAA
1 CTCTACTTCCCTCGATGCCGCATCTACTTTAAGTTGTAGCTGGAGTTCTTCATATTTCCTTTGAA
37250643 CCTCAACT
66 CCTCAACT
37250651 GTGGTCGCTT
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 65 1.00
ACGTcount: A:0.14, C:0.30, G:0.16, T:0.39
Consensus pattern (87 bp):
CTCTACTTCCCTCGATGCCGCATCTACTTTAAGTTGTAGCTGGAGTTCTTCATATTTCCTTTGAA
CCTCAACTTCGCTCGCTGCAGC
Done.