Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 111 of 145
Found at i:37256214 original size:94 final size:94
Alignment explanation
Indices: 37256075--37256327 Score: 443
Period size: 94 Copynumber: 2.7 Consensus size: 94
37256065 AAATTATGTT
* ** * *
37256075 ATTAGAAATTAATATTATATAAGTAATCTTAATTAGAAATTTTATCTTAATATTGTATAAGTTAT
1 ATTAGAAATTAATATTAAACGAGTTAT-GTAATTAGAAATTTTATCTTAATATTGTATAAGTTAT
37256140 CTAAAATTAGAAATTGATGTGTACTTAGAA
65 CTAAAATTAGAAATTGATGTGTACTTAGAA
37256170 ATTAGAAATTAATATTAAACGAGTTATGTAATTAGAAATTTTATCTTAATATTGTATAAGTTATC
1 ATTAGAAATTAATATTAAACGAGTTATGTAATTAGAAATTTTATCTTAATATTGTATAAGTTATC
37256235 TAAAATTAGAAATTGATGTGTACTTAGAA
66 TAAAATTAGAAATTGATGTGTACTTAGAA
*
37256264 ATTAGAAATTAATATTAAACGAGTTATGTAATTAGAAATTTTATCTTAATATTATATAAGTTAT
1 ATTAGAAATTAATATTAAACGAGTTATGTAATTAGAAATTTTATCTTAATATTGTATAAGTTAT
37256328 GAAGTGTCCT
Statistics
Matches: 152, Mismatches: 6, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
94 129 0.85
95 23 0.15
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.42
Consensus pattern (94 bp):
ATTAGAAATTAATATTAAACGAGTTATGTAATTAGAAATTTTATCTTAATATTGTATAAGTTATC
TAAAATTAGAAATTGATGTGTACTTAGAA
Found at i:37256611 original size:10 final size:10
Alignment explanation
Indices: 37256596--37256652 Score: 60
Period size: 10 Copynumber: 5.5 Consensus size: 10
37256586 TAAATTTATA
37256596 ATTCATTGAC
1 ATTCATTGAC
37256606 ATTCATTGAC
1 ATTCATTGAC
**
37256616 AATTCACCGAC
1 -ATTCATTGAC
37256627 ATTCATTGAC
1 ATTCATTGAC
**
37256637 AATTCACCGAC
1 -ATTCATTGAC
37256648 ATTCA
1 ATTCA
37256653 ATCAATTAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
10 23 0.59
11 16 0.41
ACGTcount: A:0.33, C:0.26, G:0.09, T:0.32
Consensus pattern (10 bp):
ATTCATTGAC
Found at i:37256619 original size:21 final size:21
Alignment explanation
Indices: 37256603--37256652 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
37256593 ATAATTCATT
37256603 GACATTCATTGACAATTCACC
1 GACATTCATTGACAATTCACC
37256624 GACATTCATTGACAATTCACC
1 GACATTCATTGACAATTCACC
37256645 GACATTCA
1 GACATTCA
37256653 ATCAATTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.34, C:0.28, G:0.10, T:0.28
Consensus pattern (21 bp):
GACATTCATTGACAATTCACC
Found at i:37257453 original size:18 final size:18
Alignment explanation
Indices: 37257430--37257464 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
37257420 CTTGCCCTTA
*
37257430 GTAATCGGCAGAGGCAAC
1 GTAATCGACAGAGGCAAC
37257448 GTAATCGACAGAGGCAA
1 GTAATCGACAGAGGCAA
37257465 ACCCTAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.20, G:0.31, T:0.11
Consensus pattern (18 bp):
GTAATCGACAGAGGCAAC
Found at i:37258696 original size:21 final size:21
Alignment explanation
Indices: 37258672--37258716 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
37258662 TATAAGCCTT
* *
37258672 AACTGCAAATCATAAACCCCA
1 AACTACAAACCATAAACCCCA
* *
37258693 AACTATAAACCCTAAACCCCA
1 AACTACAAACCATAAACCCCA
37258714 AAC
1 AAC
37258717 CGTAAACCTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.49, C:0.36, G:0.02, T:0.13
Consensus pattern (21 bp):
AACTACAAACCATAAACCCCA
Found at i:37258708 original size:7 final size:7
Alignment explanation
Indices: 37258684--37258746 Score: 54
Period size: 7 Copynumber: 9.0 Consensus size: 7
37258674 CTGCAAATCA
37258684 TAAACCC
1 TAAACCC
* **
37258691 CAAACTA
1 TAAACCC
37258698 TAAACCC
1 TAAACCC
37258705 TAAACCC
1 TAAACCC
* *
37258712 CAAACCG
1 TAAACCC
*
37258719 TAAACCT
1 TAAACCC
* *
37258726 TAAATCT
1 TAAACCC
37258733 TAAACCC
1 TAAACCC
37258740 TAAACCC
1 TAAACCC
37258747 ATCAATTAAT
Statistics
Matches: 43, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
7 43 1.00
ACGTcount: A:0.44, C:0.37, G:0.02, T:0.17
Consensus pattern (7 bp):
TAAACCC
Found at i:37258722 original size:21 final size:21
Alignment explanation
Indices: 37258684--37258729 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
37258674 CTGCAAATCA
*
37258684 TAAACCCCAAACTATAAACCC
1 TAAACCCCAAACCATAAACCC
* *
37258705 TAAACCCCAAACCGTAAACCT
1 TAAACCCCAAACCATAAACCC
37258726 TAAA
1 TAAA
37258730 TCTTAAACCC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.48, C:0.35, G:0.02, T:0.15
Consensus pattern (21 bp):
TAAACCCCAAACCATAAACCC
Found at i:37259793 original size:227 final size:229
Alignment explanation
Indices: 37259555--37260027 Score: 523
Period size: 227 Copynumber: 2.1 Consensus size: 229
37259545 TTTTTAGTTA
* * * *
37259555 AGCGTCGCTAATTTC-G-GGAAATAGCGGCGTTTTGTAAAAACCGCCGCT-ATTGGCT-CTATAG
1 AGCGCCGCTAATTACTGTGGAAATA--GGCGTTTT-TAAAAACCGCCACTAATT--CTGCTATAC
* * * * * *
37259616 CTGAAGAC-CAAATGTTGCG-TTTCAGTTAAGATATTTTGCGGCGCTTTTTATATTGTGCCGCTA
61 CTCAAGACAAAAACGCTGCGTTTTCAGTTAAGATATTTTGCGGCGCTTTTTATATAGCGCCGCTA
* * * *
37259679 ATACTGTGATTTAGCGGCGAGTTTCATAAGCGCCACTAATTCTAATATGCCTGAAGACC-AAACG
126 ATACTGTGATTTAGCGGCGAGTTTCATAAGCGCCAATAATTCTAATATACCTCAAGACCAAAACA
* *
37259743 CTGCATTTTGGTTAAGATATTTTGCGGCGCTTTTTATAT
191 CAGCATTTTGGTTAAGATATTTTACGGCGCTTTTTATAT
**** * * * *
37259782 AGCGCCGCTAA-TACTGTGTTTTTAGGCGTTTTTCATAAGCGCCACTAATTCTGGTATACCTCAA
1 AGCGCCGCTAATTACTGTGGAAATAGGCGTTTTTAAAAACCGCCACTAATTCTGCTATACCTCAA
* * *
37259846 GACAAAAACGCTGCGTTTTTAGTTAAGATATTTTTCGGCGCTTTTTTTATAGCGCCGCTAATACT
66 GACAAAAACGCTGCGTTTTCAGTTAAGATATTTTGCGGCGCTTTTTATATAGCGCCGCTAATACT
* * ** * * *
37259911 GTGCTTTAGCGGTGTTTTTCGTAAGCGCCAATAATTCTGATATACCTCAAGACCAAAACACAGCG
131 GTGATTTAGCGGCGAGTTTCATAAGCGCCAATAATTCTAATATACCTCAAGACCAAAACACAGCA
37259976 TTTTGGTTAAGATATTTTACGGCGCTTTTTATAT
196 TTTTGGTTAAGATATTTTACGGCGCTTTTTATAT
*
37260010 TGCGCCGCTAA-TACTGTG
1 AGCGCCGCTAATTACTGTG
37260028 CTTTAGCGGC
Statistics
Matches: 204, Mismatches: 35, Indels: 13
0.81 0.14 0.05
Matches are distributed among these distances:
224 2 0.01
225 21 0.10
226 21 0.10
227 100 0.49
228 60 0.29
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.35
Consensus pattern (229 bp):
AGCGCCGCTAATTACTGTGGAAATAGGCGTTTTTAAAAACCGCCACTAATTCTGCTATACCTCAA
GACAAAAACGCTGCGTTTTCAGTTAAGATATTTTGCGGCGCTTTTTATATAGCGCCGCTAATACT
GTGATTTAGCGGCGAGTTTCATAAGCGCCAATAATTCTAATATACCTCAAGACCAAAACACAGCA
TTTTGGTTAAGATATTTTACGGCGCTTTTTATAT
Found at i:37259969 original size:115 final size:114
Alignment explanation
Indices: 37259631--37260076 Score: 601
Period size: 114 Copynumber: 3.9 Consensus size: 114
37259621 GACCAAATGT
* * * *
37259631 TGCGTTTCAGTTAAGATATTTTGCGGCGCTTTTTATATTGTGCCGCTAATACTGTGATTTAGCGG
1 TGCGTTTTAGTTAAGATATTTTGCGGCGCTTTTTATATAGCGCCGCTAATACTGTGCTTTAGCGG
** * *
37259696 CGAGTTTCATAAGCGCCACTAATTCTAATATGCCTGAAGACC-AAACGC
66 CGTTTTTCATAAGCGCCACTAATTCTAATATACCTCAAGACCAAAACGC
* * *
37259744 TGCATTTTGGTTAAGATATTTTGCGGCGCTTTTTATATAGCGCCGCTAATACTGTGTTTTTA--G
1 TGCGTTTTAGTTAAGATATTTTGCGGCGCTTTTTATATAGCGCCGCTAATACTGTG-CTTTAGCG
** *
37259807 GCGTTTTTCATAAGCGCCACTAATTCTGGTATACCTCAAGACAAAAACGC
65 GCGTTTTTCATAAGCGCCACTAATTCTAATATACCTCAAGACCAAAACGC
* *
37259857 TGCGTTTTTAGTTAAGATATTTTTCGGCGCTTTTTTTATAGCGCCGCTAATACTGTGCTTTAGCG
1 TGCG-TTTTAGTTAAGATATTTTGCGGCGCTTTTTATATAGCGCCGCTAATACTGTGCTTTAGCG
* * * * *
37259922 GTGTTTTTCGTAAGCGCCAATAATTCTGATATACCTCAAGACCAAAACAC
65 GCGTTTTTCATAAGCGCCACTAATTCTAATATACCTCAAGACCAAAACGC
* * * *
37259972 AGCGTTTTGGTTAAGATATTTTACGGCGCTTTTTATATTGCGCCGCTAATACTGTGCTTTAGCGG
1 TGCGTTTTAGTTAAGATATTTTGCGGCGCTTTTTATATAGCGCCGCTAATACTGTGCTTTAGCGG
* *
37260037 CGTTTTTGCATAAGCGCCACTAATTTTAATATACTTCAAG
66 CGTTTTT-CATAAGCGCCACTAATTCTAATATACCTCAAG
37260077 CTCGTACGCT
Statistics
Matches: 292, Mismatches: 35, Indels: 10
0.87 0.10 0.03
Matches are distributed among these distances:
112 37 0.13
113 64 0.22
114 116 0.40
115 75 0.26
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (114 bp):
TGCGTTTTAGTTAAGATATTTTGCGGCGCTTTTTATATAGCGCCGCTAATACTGTGCTTTAGCGG
CGTTTTTCATAAGCGCCACTAATTCTAATATACCTCAAGACCAAAACGC
Found at i:37260091 original size:114 final size:113
Alignment explanation
Indices: 37259619--37260116 Score: 599
Period size: 114 Copynumber: 4.4 Consensus size: 113
37259609 TCTATAGCTG
* * ** * *
37259619 AAGACCAAATGTTGCGTTTCAGTTAAGATATTTTGCGGCGCTTTTTATATTGTGCCGCTAATACT
1 AAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTTATATAGCGCCGCTAATACT
* ** * *
37259684 GTGATTTAGCGGCGAGTTTCATAAGCGCCACTAATTCTAATATGCCTG
66 GTGCTTTAGCGGCGTTTTTCATAAGCGCCACTAATTCTAATATACCTC
*
37259732 AAGACCAAACGCTGCATTTTGGTTAAGATATTTTGCGGCGCTTTTTATATAGCGCCGCTAATACT
1 AAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTTATATAGCGCCGCTAATACT
* **
37259797 GTGTTTTTA--GGCGTTTTTCATAAGCGCCACTAATTCTGGTATACCTC
66 GTG-CTTTAGCGGCGTTTTTCATAAGCGCCACTAATTCTAATATACCTC
* * * *
37259844 AAGACAAAAACGCTGCGTTTTTAGTTAAGATATTTTTCGGCGCTTTTTTTATAGCGCCGCTAATA
1 AAGAC-CAAACGCTGCG-TTTTGGTTAAGATATTTTGCGGCGCTTTTTATATAGCGCCGCTAATA
* * * *
37259909 CTGTGCTTTAGCGGTGTTTTTCGTAAGCGCCAATAATTCTGATATACCTC
64 CTGTGCTTTAGCGGCGTTTTTCATAAGCGCCACTAATTCTAATATACCTC
* * * *
37259959 AAGACCAAAACACAGCGTTTTGGTTAAGATATTTTACGGCGCTTTTTATATTGCGCCGCTAATAC
1 AAGACC-AAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTTATATAGCGCCGCTAATAC
* *
37260024 TGTGCTTTAGCGGCGTTTTTGCATAAGCGCCACTAATTTTAATATACTTC
65 TGTGCTTTAGCGGCGTTTTT-CATAAGCGCCACTAATTCTAATATACCTC
** * * *
37260074 AAG-CTCGTACGCTGCGTTTTGTTTAACAT-TTTCTGCAGCGCTT
1 AAGAC-CAAACGCTGCGTTTTGGTTAAGATATTT-TGCGGCGCTT
37260117 ACAAATAAAC
Statistics
Matches: 331, Mismatches: 45, Indels: 17
0.84 0.11 0.04
Matches are distributed among these distances:
112 37 0.11
113 77 0.23
114 142 0.43
115 75 0.23
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.37
Consensus pattern (113 bp):
AAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGCGCTTTTTATATAGCGCCGCTAATACT
GTGCTTTAGCGGCGTTTTTCATAAGCGCCACTAATTCTAATATACCTC
Found at i:37261580 original size:13 final size:13
Alignment explanation
Indices: 37261562--37261587 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37261552 AGAAACACAT
37261562 ATATCATATCAGA
1 ATATCATATCAGA
37261575 ATATCATATCAGA
1 ATATCATATCAGA
37261588 CCATAACAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (13 bp):
ATATCATATCAGA
Found at i:37263568 original size:43 final size:42
Alignment explanation
Indices: 37263515--37263863 Score: 378
Period size: 43 Copynumber: 8.2 Consensus size: 42
37263505 TTTCAAAAAT
* *
37263515 AAACACCGCTATAGACCATGACCTTTAGCGGTGCTTTTCCCAC
1 AAACGCCGCTATAGACCA-GACCTTTAGCGGCGCTTTTCCCAC
* * * *
37263558 AAACGCCGCTAAAGATCAGGACCTTTAGCGGTGCTTTT-GCAC
1 AAACGCCGCTATAGACCA-GACCTTTAGCGGCGCTTTTCCCAC
* * * * *
37263600 AAGCGCTGTTATAGATCGAGATCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGA-CCAGACCTTTAGCGGCGCTTTTCCCAC
*
37263643 AAACGCCGCTATAGATCGAGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGA-CCAGACCTTTAGCGGCGCTTTTCCCAC
*
37263686 AAACGCCGCTATAGATCGAGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTATAGA-CCAGACCTTTAGCGGCGCTTTTCCCAC
* * * * *
37263729 AAACACCGCTATAGATCATGACATTTAGCGGCACTTTTTCCAC
1 AAACGCCGCTATAGACCA-GACCTTTAGCGGCGCTTTTCCCAC
* *
37263772 AAATGCCGCTATAG-CTCAAGACCTTTAGTGGCGCTTTTCCCAC
1 AAACGCCGCTATAGAC-C-AGACCTTTAGCGGCGCTTTTCCCAC
* * * * * *
37263815 AAACGCCGCTATAGAACAAACCTTTAGCGACGCTTCTCGCAA
1 AAACGCCGCTATAGACCAGACCTTTAGCGGCGCTTTTCCCAC
37263857 AAACGCC
1 AAACGCC
37263864 ACTAAAAACA
Statistics
Matches: 261, Mismatches: 39, Indels: 13
0.83 0.12 0.04
Matches are distributed among these distances:
42 58 0.22
43 202 0.77
44 1 0.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (42 bp):
AAACGCCGCTATAGACCAGACCTTTAGCGGCGCTTTTCCCAC
Found at i:37263738 original size:86 final size:86
Alignment explanation
Indices: 37263515--37263863 Score: 427
Period size: 86 Copynumber: 4.1 Consensus size: 86
37263505 TTTCAAAAAT
* * * *
37263515 AAACACCGCTATAGA-CCATGACCTTTAGCGGTGCTTTTCCCACAAACGCCGCTAAAGATCAGGA
1 AAACGCCGCTATAGATCGA-GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAGGA
* *
37263579 CCTTTAGCGGTGCTTTT-GCAC
65 CCTTTAGCGGCGCTTTTCCCAC
* * * *
37263600 AAGCGCTGTTATAGATCGAGATCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATC-GAGA
1 AAACGCCGCTATAGATCGAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAG-GA
37263664 CCTTTAGCGGCGCTTTTCCCAC
65 CCTTTAGCGGCGCTTTTCCCAC
* *
37263686 AAACGCCGCTATAGATCGAGACCTTTAGCGGCGCTTTTCCCACAAACACCGCTATAGATCATGAC
1 AAACGCCGCTATAGATCGAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAGGAC
* * *
37263751 ATTTAGCGGCACTTTTTCCAC
66 CTTTAGCGGCGCTTTTCCCAC
* * * * * *
37263772 AAATGCCGCTATAGCTCAAGACCTTTAGTGGCGCTTTTCCCACAAACGCCGCTATAGAACA-AAC
1 AAACGCCGCTATAGATCGAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAGGAC
* * * *
37263836 CTTTAGCGACGCTTCTCGCAA
66 CTTTAGCGGCGCTTTTCCCAC
37263857 AAACGCC
1 AAACGCC
37263864 ACTAAAAACA
Statistics
Matches: 226, Mismatches: 34, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
84 1 0.00
85 89 0.39
86 136 0.60
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (86 bp):
AAACGCCGCTATAGATCGAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAGGAC
CTTTAGCGGCGCTTTTCCCAC
Found at i:37263805 original size:129 final size:127
Alignment explanation
Indices: 37263515--37263849 Score: 424
Period size: 129 Copynumber: 2.6 Consensus size: 127
37263505 TTTCAAAAAT
* * * *
37263515 AAACACCGCTATAGAC-CATGACCTTTAGCGGTGCTTTTCCCACAAACGCCGCTAAAGATCAGGA
1 AAACGCCGCTATAG-CTCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCA-GA
* * * * * * *
37263579 CCTTTAGCGGTGCTTTTGCACAAGCGCTGTTATAGATCGAGATCTTTAGCGGCGCTTTTCCCAC
64 CCTTTAGCGGCGCTTTTCCACAAACACCGCTATAGATCGAGATCTTTAGCGGCACTTTTCCCAC
* *
37263643 AAACGCCGCTATAGATCGAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCGAGAC
1 AAACGCCGCTATAGCTCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATC-AGAC
*
37263708 CTTTAGCGGCGCTTTTCCCACAAACACCGCTATAGATC-ATGA-CATTTAGCGGCACTTTTTCCA
65 CTTTAGCGGCGCTTTT-CCACAAACACCGCTATAGATCGA-GATC-TTTAGCGGCACTTTTCCCA
37263771 C
127 C
* * * *
37263772 AAATGCCGCTATAGCTCAAGACCTTTAGTGGCGCTTTTCCCACAAACGCCGCTATAGAACAAACC
1 AAACGCCGCTATAGCTCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAGACC
*
37263837 TTTAGCGACGCTT
66 TTTAGCGGCGCTT
37263850 CTCGCAAAAA
Statistics
Matches: 181, Mismatches: 21, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
128 89 0.49
129 92 0.51
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (127 bp):
AAACGCCGCTATAGCTCAAGACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGATCAGACC
TTTAGCGGCGCTTTTCCACAAACACCGCTATAGATCGAGATCTTTAGCGGCACTTTTCCCAC
Found at i:37265835 original size:8 final size:8
Alignment explanation
Indices: 37265807--37265853 Score: 58
Period size: 8 Copynumber: 5.4 Consensus size: 8
37265797 AGCAAAAAGT
37265807 TAAAACCAA
1 TAAAA-CAA
37265816 GTAAACACAA
1 -TAAA-ACAA
37265826 TAAAACAA
1 TAAAACAA
37265834 TAAACACAA
1 TAAA-ACAA
37265843 TAAAACAA
1 TAAAACAA
37265851 TAA
1 TAA
37265854 GAAAACTGAA
Statistics
Matches: 35, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
8 15 0.43
9 12 0.34
10 7 0.20
11 1 0.03
ACGTcount: A:0.68, C:0.17, G:0.02, T:0.13
Consensus pattern (8 bp):
TAAAACAA
Found at i:37265839 original size:17 final size:17
Alignment explanation
Indices: 37265807--37265853 Score: 76
Period size: 17 Copynumber: 2.6 Consensus size: 17
37265797 AGCAAAAAGT
37265807 TAAAACCAAGTAAACACAA
1 TAAAA-CAA-TAAACACAA
37265826 TAAAACAATAAACACAA
1 TAAAACAATAAACACAA
37265843 TAAAACAATAA
1 TAAAACAATAA
37265854 GAAAACTGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 20 0.71
18 3 0.11
19 5 0.18
ACGTcount: A:0.68, C:0.17, G:0.02, T:0.13
Consensus pattern (17 bp):
TAAAACAATAAACACAA
Found at i:37266416 original size:12 final size:12
Alignment explanation
Indices: 37266399--37266453 Score: 62
Period size: 12 Copynumber: 4.7 Consensus size: 12
37266389 CAAATTATTT
37266399 TATTTAAACTAA
1 TATTTAAACTAA
37266411 TATTTAAACT--
1 TATTTAAACTAA
*
37266421 TATTTATTAA-TAC
1 TATTTA--AACTAA
37266434 TATTTAAACTAA
1 TATTTAAACTAA
37266446 TATTTAAA
1 TATTTAAA
37266454 TGTTTAAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
10 6 0.16
11 3 0.08
12 22 0.59
13 6 0.16
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.47
Consensus pattern (12 bp):
TATTTAAACTAA
Found at i:37266473 original size:35 final size:36
Alignment explanation
Indices: 37266390--37266478 Score: 105
Period size: 35 Copynumber: 2.6 Consensus size: 36
37266380 TTTTGAACAC
37266390 AAAT-TATTTTATTTAAACTAATATTTAAACTTATT
1 AAATATATTTTATTTAAACTAATATTTAAACTTATT
* * **
37266425 TATTA-ATACTATTTAAACTAATATTTAAA-TGT-TT
1 AAATATATTTTATTTAAACTAATATTTAAACT-TATT
37266459 AAATATATTTTATTTAAACT
1 AAATATATTTTATTTAAACT
37266479 TATTTATTAA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
34 6 0.14
35 37 0.86
ACGTcount: A:0.43, C:0.06, G:0.01, T:0.51
Consensus pattern (36 bp):
AAATATATTTTATTTAAACTAATATTTAAACTTATT
Found at i:37266534 original size:58 final size:58
Alignment explanation
Indices: 37266414--37266534 Score: 154
Period size: 58 Copynumber: 2.1 Consensus size: 58
37266404 AAACTAATAT
* * * *
37266414 TTAAACTTATTTATTAATACTATTTAAACTAATATTTAAATGTTTAAATATATTTTAT
1 TTAAACTTATTTATTAATACTATTTAAACTAATATTTAAATATATAAATATAGTTTAA
* * * *
37266472 TTAAACTTATTTATTAATTCTATTTAACCTAATATTTAAATATATCAA-ATGGTTTAGA
1 TTAAACTTATTTATTAATACTATTTAAACTAATATTTAAATATATAAATATAGTTTA-A
37266530 TTAAA
1 TTAAA
37266535 TTTTTTTAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
57 6 0.11
58 48 0.89
ACGTcount: A:0.41, C:0.07, G:0.03, T:0.49
Consensus pattern (58 bp):
TTAAACTTATTTATTAATACTATTTAAACTAATATTTAAATATATAAATATAGTTTAA
Found at i:37266792 original size:15 final size:15
Alignment explanation
Indices: 37266772--37266809 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
37266762 TCGACCCCTG
37266772 AATCCCTAAAC-CTT
1 AATCCCTAAACTCTT
37266786 AAATCCCT-AACTCTT
1 -AATCCCTAAACTCTT
37266801 AATCCCTAA
1 AATCCCTAA
37266810 CATCTAGCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.37, C:0.34, G:0.00, T:0.29
Consensus pattern (15 bp):
AATCCCTAAACTCTT
Found at i:37266806 original size:14 final size:14
Alignment explanation
Indices: 37266772--37266810 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
37266762 TCGACCCCTG
37266772 AATCCCTAAACCTTA
1 AATCCCT-AACCTTA
37266787 AATCCCTAACTCTT-
1 AATCCCTAAC-CTTA
37266801 AATCCCTAAC
1 AATCCCTAAC
37266811 ATCTAGCCCC
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 13 0.57
15 10 0.43
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.28
Consensus pattern (14 bp):
AATCCCTAACCTTA
Found at i:37267084 original size:14 final size:14
Alignment explanation
Indices: 37267065--37267127 Score: 65
Period size: 14 Copynumber: 4.4 Consensus size: 14
37267055 AACCTTAAAT
37267065 CCCTAAC-TCTTAAC
1 CCCTAACGTC-TAAC
*
37267079 CCCTAACGTCAAAC
1 CCCTAACGTCTAAC
37267093 CCCTAACGTCTAAC
1 CCCTAACGTCTAAC
* **
37267107 CCTTAAACCCCTAAC
1 CCCT-AACGTCTAAC
37267122 CCCTAA
1 CCCTAA
37267128 ACTTTAAATC
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
14 28 0.68
15 13 0.32
ACGTcount: A:0.32, C:0.44, G:0.03, T:0.21
Consensus pattern (14 bp):
CCCTAACGTCTAAC
Found at i:37267149 original size:21 final size:22
Alignment explanation
Indices: 37267075--37267150 Score: 66
Period size: 22 Copynumber: 3.5 Consensus size: 22
37267065 CCCTAACTCT
* *
37267075 TAACCCCT-AACGTCAAACCCC
1 TAACCCCTAAACTTTAAACCCC
** * *
37267096 TAACGTCTAACCCTTAAACCCC
1 TAACCCCTAAACTTTAAACCCC
*
37267118 TAACCCCTAAACTTTAAATCCC
1 TAACCCCTAAACTTTAAACCCC
*
37267140 -AACCCTTAAAC
1 TAACCCCTAAAC
37267151 CATAATCCCT
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
21 16 0.37
22 27 0.63
ACGTcount: A:0.36, C:0.41, G:0.03, T:0.21
Consensus pattern (22 bp):
TAACCCCTAAACTTTAAACCCC
Found at i:37267167 original size:14 final size:14
Alignment explanation
Indices: 37267150--37267191 Score: 66
Period size: 14 Copynumber: 2.9 Consensus size: 14
37267140 AACCCTTAAA
37267150 CCATAATCCCTAAT
1 CCATAATCCCTAAT
37267164 CCATAATCCCTAAAT
1 CCATAATCCCT-AAT
*
37267179 CCATACTCCCTAA
1 CCATAATCCCTAA
37267192 ACCTTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
14 13 0.50
15 13 0.50
ACGTcount: A:0.36, C:0.38, G:0.00, T:0.26
Consensus pattern (14 bp):
CCATAATCCCTAAT
Found at i:37267179 original size:15 final size:15
Alignment explanation
Indices: 37267146--37267192 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
37267136 TCCCAACCCT
37267146 TAAA-CCATAATCCC
1 TAAATCCATAATCCC
37267160 T-AATCCATAATCCC
1 TAAATCCATAATCCC
*
37267174 TAAATCCATACTCCC
1 TAAATCCATAATCCC
37267189 TAAA
1 TAAA
37267193 CCTTAAAATA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
13 2 0.07
14 12 0.40
15 16 0.53
ACGTcount: A:0.40, C:0.34, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:37267595 original size:41 final size:41
Alignment explanation
Indices: 37267538--37267736 Score: 310
Period size: 41 Copynumber: 4.9 Consensus size: 41
37267528 TAAAAAGCTT
* *
37267538 TTAGCGGTGCTTTATCAAAAACGCCGCTAAAGCCCAGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCAGAGCA
* * *
37267579 TTAGCGGCGCTTTATCAAAAACGCTGCTAAATCCCAGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCAGAGCA
* *
37267620 TTAGCGGCGCTTTTTCAAAAAAGCCGCTAAAGCCCCGAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCAGAGCA
37267661 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCC-GAGCA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAA-GCCCAGAGCA
*
37267702 TTAGCGGCGCTTTTTCAAAATCGCCGCTAAAGCCC
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCC
37267737 CAAAAGGTCA
Statistics
Matches: 147, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
40 4 0.03
41 139 0.95
42 4 0.03
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.21
Consensus pattern (41 bp):
TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCAGAGCA
Found at i:37267777 original size:43 final size:43
Alignment explanation
Indices: 37267729--37267815 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
37267719 AAATCGCCGC
* *
37267729 TAAAGCCCCAAAAGGTCAGAAGACGGCGTCGTTGGGCTTATGT
1 TAAAGCCCCAAAAGGTCAGAAAACAGCGTCGTTGGGCTTATGT
37267772 TAAAGCCCCAAAAGGTCAGAAAACAGCGTCGTTGGGCTTATGT
1 TAAAGCCCCAAAAGGTCAGAAAACAGCGTCGTTGGGCTTATGT
37267815 T
1 T
37267816 TTTTGCGGCG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (43 bp):
TAAAGCCCCAAAAGGTCAGAAAACAGCGTCGTTGGGCTTATGT
Found at i:37267901 original size:40 final size:39
Alignment explanation
Indices: 37267830--37267944 Score: 149
Period size: 40 Copynumber: 2.9 Consensus size: 39
37267820 GCGGCGCCAG
* * * *
37267830 AAAGCGCCGCTAATGCTTATTTTTAGCGGCGTTTTCCAT
1 AAAGCACCGCTAATGCTAATCTTTAGCGGCGTTTTCCAA
**
37267869 AATTCACCGCTAATGCTAGATCTTTAGCGGCGTTTTCCAA
1 AAAGCACCGCTAATGCTA-ATCTTTAGCGGCGTTTTCCAA
*
37267909 AAAGCGCCGCTAATGCTCAATCTTTAGCGGCGTTTT
1 AAAGCACCGCTAATGCT-AATCTTTAGCGGCGTTTT
37267945 TTATCCAAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
39 14 0.22
40 50 0.77
41 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.33
Consensus pattern (39 bp):
AAAGCACCGCTAATGCTAATCTTTAGCGGCGTTTTCCAA
Found at i:37267971 original size:12 final size:12
Alignment explanation
Indices: 37267954--37267978 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37267944 TTTATCCAAA
37267954 CGCCGCTAAAAG
1 CGCCGCTAAAAG
37267966 CGCCGCTAAAAG
1 CGCCGCTAAAAG
37267978 C
1 C
37267979 CTATTTTGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.36, G:0.24, T:0.08
Consensus pattern (12 bp):
CGCCGCTAAAAG
Found at i:37268730 original size:27 final size:29
Alignment explanation
Indices: 37268690--37268748 Score: 77
Period size: 28 Copynumber: 2.1 Consensus size: 29
37268680 TAGATTTGCG
* *
37268690 AAAATTTTATAAATAT-TTTTAATAAAAT
1 AAAATTTTAAAAATATATTATAATAAAAT
*
37268718 AAAA-TTTAAAAATATATTATAATTAAAT
1 AAAATTTTAAAAATATATTATAATAAAAT
37268746 AAA
1 AAA
37268749 TATTATTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 10 0.37
28 17 0.63
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (29 bp):
AAAATTTTAAAAATATATTATAATAAAAT
Found at i:37269383 original size:30 final size:29
Alignment explanation
Indices: 37269315--37269389 Score: 71
Period size: 30 Copynumber: 2.5 Consensus size: 29
37269305 AAGAAATTTG
*
37269315 TTAAAAGGGTATAAATTGAATTATTAATTT
1 TTAAAAGGGTA-AAATTGAATTATTAATTA
** *
37269345 TTTTAAGGGCTAAAA-TGTAATTTTTAATTA
1 TTAAAAGGG-TAAAATTG-AATTATTAATTA
37269375 TTAAAAGGGTTAAAA
1 TTAAAAGGG-TAAAA
37269390 AGCTTAAATT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
29 2 0.06
30 32 0.89
31 2 0.06
ACGTcount: A:0.43, C:0.01, G:0.15, T:0.41
Consensus pattern (29 bp):
TTAAAAGGGTAAAATTGAATTATTAATTA
Found at i:37273436 original size:82 final size:83
Alignment explanation
Indices: 37273334--37273498 Score: 323
Period size: 82 Copynumber: 2.0 Consensus size: 83
37273324 AAATTTATTT
37273334 CAACATCATATATACTTTTTATTAATTTATAAGTTATAATAAAAAAGAAAAATTATAATTTATCA
1 CAACATCATATATACTTTTTATTAATTTATAAGTTATAATAAAAAAGAAAAATTATAATTTATCA
37273399 TTAATTTATTCAAAATTG
66 TTAATTTATTCAAAATTG
37273417 CAACATCATA-ATACTTTTTATTAATTTATAAGTTATAATAAAAAAGAAAAATTATAATTTATCA
1 CAACATCATATATACTTTTTATTAATTTATAAGTTATAATAAAAAAGAAAAATTATAATTTATCA
37273481 TTAATTTATTCAAAATTG
66 TTAATTTATTCAAAATTG
37273499 AGATTAATAA
Statistics
Matches: 82, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
82 72 0.88
83 10 0.12
ACGTcount: A:0.47, C:0.07, G:0.04, T:0.42
Consensus pattern (83 bp):
CAACATCATATATACTTTTTATTAATTTATAAGTTATAATAAAAAAGAAAAATTATAATTTATCA
TTAATTTATTCAAAATTG
Found at i:37275981 original size:27 final size:27
Alignment explanation
Indices: 37275939--37276002 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
37275929 CATCCTATCA
* * *
37275939 GCCTTTGTGGCGTACTCTGAATGAATT
1 GCCTTTGTGGCATACTCTAAATGAATC
*
37275966 GCCTTTGTGGCATACTCTAAATGGATC
1 GCCTTTGTGGCATACTCTAAATGAATC
*
37275993 GCCTTAGTGG
1 GCCTTTGTGG
37276003 TGTACCTTAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.19, C:0.20, G:0.27, T:0.34
Consensus pattern (27 bp):
GCCTTTGTGGCATACTCTAAATGAATC
Found at i:37290873 original size:15 final size:15
Alignment explanation
Indices: 37290854--37290891 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
37290844 TAATTAAGGT
37290854 TTAATTAAATAATT-
1 TTAATTAAATAATTA
*
37290868 TATAATTAATTAATTA
1 T-TAATTAAATAATTA
37290884 TTAATTAA
1 TTAATTAA
37290892 GGTATATAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 19 0.90
16 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TTAATTAAATAATTA
Found at i:37294042 original size:13 final size:14
Alignment explanation
Indices: 37294024--37294056 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
37294014 TTAGCTTATT
*
37294024 AAATATAAATA-AA
1 AAATATAAACATAA
37294037 AAATATAAACATAA
1 AAATATAAACATAA
37294051 AAATAT
1 AAATAT
37294057 TACAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.73, C:0.03, G:0.00, T:0.24
Consensus pattern (14 bp):
AAATATAAACATAA
Found at i:37295112 original size:32 final size:34
Alignment explanation
Indices: 37295075--37295148 Score: 107
Period size: 34 Copynumber: 2.2 Consensus size: 34
37295065 CTATGTTATA
*
37295075 GTTTATGCTAATT-ATATTTTTATAATAAGG-AT
1 GTTTATGCTAATTGATATTATTATAATAAGGAAT
*
37295107 TTTTATGCTAATTGGATATTATTATAATAAGGAAT
1 GTTTATGCTAATT-GATATTATTATAATAAGGAAT
37295142 GTTTATG
1 GTTTATG
37295149 GGATTGAGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
32 12 0.33
34 16 0.44
35 8 0.22
ACGTcount: A:0.34, C:0.03, G:0.15, T:0.49
Consensus pattern (34 bp):
GTTTATGCTAATTGATATTATTATAATAAGGAAT
Found at i:37295305 original size:6 final size:6
Alignment explanation
Indices: 37295294--37295320 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
37295284 GCATATAATT
37295294 ATTATA ATTATA ATTATA ATTATA ATT
1 ATTATA ATTATA ATTATA ATTATA ATT
37295321 TAAGGTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
ATTATA
Found at i:37296512 original size:32 final size:34
Alignment explanation
Indices: 37296475--37296548 Score: 107
Period size: 34 Copynumber: 2.2 Consensus size: 34
37296465 CTATGTTATA
*
37296475 GTTTATGCTAATT-ATATTTTTATAATAAGG-AT
1 GTTTATGCTAATTGATATTATTATAATAAGGAAT
*
37296507 TTTTATGCTAATTGGATATTATTATAATAAGGAAT
1 GTTTATGCTAATT-GATATTATTATAATAAGGAAT
37296542 GTTTATG
1 GTTTATG
37296549 GGATTGAGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
32 12 0.33
34 16 0.44
35 8 0.22
ACGTcount: A:0.34, C:0.03, G:0.15, T:0.49
Consensus pattern (34 bp):
GTTTATGCTAATTGATATTATTATAATAAGGAAT
Found at i:37296705 original size:6 final size:6
Alignment explanation
Indices: 37296694--37296720 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
37296684 GCATATAATT
37296694 ATTATA ATTATA ATTATA ATTATA ATT
1 ATTATA ATTATA ATTATA ATTATA ATT
37296721 TAAGGTAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
ATTATA
Found at i:37309493 original size:38 final size:38
Alignment explanation
Indices: 37309450--37309524 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
37309440 ACTATTTACC
* *
37309450 AAACTTAATCAACCTTTCAAGATATATTCTATTTTTTT
1 AAACTTAATCAACCTTCCAAGATATATTCTAATTTTTT
37309488 AAACTTAATCAACCTTCCAAGATATATTCTAATTTTT
1 AAACTTAATCAACCTTCCAAGATATATTCTAATTTTT
37309525 AGTGCAACCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.36, C:0.17, G:0.03, T:0.44
Consensus pattern (38 bp):
AAACTTAATCAACCTTCCAAGATATATTCTAATTTTTT
Found at i:37310268 original size:2 final size:2
Alignment explanation
Indices: 37310261--37310290 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
37310251 AATAATAAGA
37310261 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37310291 TGAAATTGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37314983 original size:35 final size:35
Alignment explanation
Indices: 37314944--37315131 Score: 102
Period size: 37 Copynumber: 5.2 Consensus size: 35
37314934 TTTGCAATCG
37314944 CAACTTCATTTAAACAGCTCGTTGATTTACGATCA
1 CAACTTCATTTAAACAGCTCGTTGATTTACGATCA
* ** *
37314979 CAACTGTCATTTTTTAA-AGCTCACTAATTTACGATCTTGA
1 CAACT-TCA--TTTAAACAGCTCGTTGATTTACGATC---A
* * *
37315019 -ACACTTCA-TT-AAGAGTTCGTTGATTTACGA-CTG
1 CA-ACTTCATTTAAACAGCTCGTTGATTTACGATC-A
* * ** *
37315052 CAACTCCATTTAAACAGTTCACTGATTTATGATCA
1 CAACTTCATTTAAACAGCTCGTTGATTTACGATCA
37315087 CAACTTTCATTTTTCAAAC--CTCGTTGATTTACGATCA
1 CAAC-TTCA--TTT-AAACAGCTCGTTGATTTACGATCA
*
37315124 CAGCTTCA
1 CAACTTCA
37315132 GTTCATTGAT
Statistics
Matches: 115, Mismatches: 22, Indels: 31
0.68 0.13 0.18
Matches are distributed among these distances:
33 5 0.04
34 3 0.03
35 28 0.24
36 26 0.23
37 33 0.29
38 8 0.07
39 8 0.07
40 4 0.03
ACGTcount: A:0.30, C:0.22, G:0.11, T:0.37
Consensus pattern (35 bp):
CAACTTCATTTAAACAGCTCGTTGATTTACGATCA
Found at i:37315117 original size:108 final size:108
Alignment explanation
Indices: 37314895--37315123 Score: 289
Period size: 108 Copynumber: 2.1 Consensus size: 108
37314885 TTCACTTTAT
* * *
37314895 TAATTTACAATCATGAACACTTCATTAAGAGTTCATCGATTTGCAATCGCAACTTCATTTAAACA
1 TAATTTACGATCATGAACACTTCATTAAGAGTTCATCGATTTACAATCGCAACTCCATTTAAACA
** * *
37314960 GCTCGTTGATTTACGATCACAACTGTCATTTTTTAAAGCTCAC
66 GCTCACTGATTTACGATCACAACTGTCATTTTTCAAACCTCAC
* * * *
37315003 TAATTTACGATCTTGAACACTTCATTAAGAGTTCGTTGATTTACGA-CTGCAACTCCATTTAAAC
1 TAATTTACGATCATGAACACTTCATTAAGAGTTCATCGATTTACAATC-GCAACTCCATTTAAAC
* * * **
37315067 AGTTCACTGATTTATGATCACAACTTTCATTTTTCAAACCTCGT
65 AGCTCACTGATTTACGATCACAACTGTCATTTTTCAAACCTCAC
*
37315111 TGATTTACGATCA
1 TAATTTACGATCA
37315124 CAGCTTCAGT
Statistics
Matches: 102, Mismatches: 18, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
107 1 0.01
108 101 0.99
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (108 bp):
TAATTTACGATCATGAACACTTCATTAAGAGTTCATCGATTTACAATCGCAACTCCATTTAAACA
GCTCACTGATTTACGATCACAACTGTCATTTTTCAAACCTCAC
Found at i:37315313 original size:36 final size:36
Alignment explanation
Indices: 37315266--37315357 Score: 130
Period size: 36 Copynumber: 2.6 Consensus size: 36
37315256 TCACAACTTC
* * *
37315266 AGTTCATTGATTTATAATCATAAATAATTCATTAAA
1 AGTTCGTTGATTTATGATCATAAACAATTCATTAAA
* * *
37315302 AGTTCGTTGATTTACGATCATGAACAATTCATTAAG
1 AGTTCGTTGATTTATGATCATAAACAATTCATTAAA
37315338 AGTTCGTTGATTTATGATCA
1 AGTTCGTTGATTTATGATCA
37315358 CAACTCCATT
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 49 1.00
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (36 bp):
AGTTCGTTGATTTATGATCATAAACAATTCATTAAA
Found at i:37315314 original size:135 final size:135
Alignment explanation
Indices: 37315018--37315316 Score: 393
Period size: 135 Copynumber: 2.2 Consensus size: 135
37315008 TACGATCTTG
* * * **
37315018 AACACTTCATTAAGAGTTCGTTGATTTACGACTGCAACTCCATTTAAACAGTTCACTGATTTATG
1 AACAATTCATTAAGAGTTCGTTGATTTACAACTGCAACTCCATTTAAACAGTTCACAGATTTACA
* * * *
37315083 ATCACAACTTTCATTTTTCAAACCTCGTTGATTTACGATCACAGCTTCAGTTCATTGATTTACAA
66 ATCAAAACTGTAATTTTTCAAACCTCGTTGATTTACGATCACAACTTCAGTTCATTGATTTACAA
*
37315148 TCATG
131 TCATA
* * *** *
37315153 ACCACTTCATTAAGAGTTCACCGATTTACAA-TCGCAACTCCATTTAAATAGTTCACAGATTTAC
1 AACAATTCATTAAGAGTTCGTTGATTTACAACT-GCAACTCCATTTAAACAGTTCACAGATTTAC
* * *
37315217 AATCAAAACTGTAATTTTTTAAAGCTCGTTGATTTACGATCACAACTTCAGTTCATTGATTTATA
65 AATCAAAACTGTAATTTTTCAAACCTCGTTGATTTACGATCACAACTTCAGTTCATTGATTTACA
37315282 ATCATA
130 ATCATA
* *
37315288 AATAATTCATTAAAAGTTCGTTGATTTAC
1 AACAATTCATTAAGAGTTCGTTGATTTAC
37315317 GATCATGAAC
Statistics
Matches: 139, Mismatches: 24, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
134 1 0.01
135 138 0.99
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.37
Consensus pattern (135 bp):
AACAATTCATTAAGAGTTCGTTGATTTACAACTGCAACTCCATTTAAACAGTTCACAGATTTACA
ATCAAAACTGTAATTTTTCAAACCTCGTTGATTTACGATCACAACTTCAGTTCATTGATTTACAA
TCATA
Found at i:37316460 original size:293 final size:293
Alignment explanation
Indices: 37315933--37316518 Score: 1156
Period size: 293 Copynumber: 2.0 Consensus size: 293
37315923 AATATCTAAT
37315933 TGTTTAAAATTTATGAAGAAATCGCAGCCCAATACGTTAGGGCACAATTTCCTAAAATCCCAAAC
1 TGTTTAAAATTTATGAAGAAATCGCAGCCCAATACGTTAGGGCACAATTTCCTAAAATCCCAAAC
37315998 ATTCAATATTTCCTTTATTTTTTTTAAAAAATCCTTGTCTCGAAAAATCAACGTGTCACATCCAA
66 ATTCAATATTTCCTTTATTTTTTTTAAAAAATCCTTGTCTCGAAAAATCAACGTGTCACATCCAA
37316063 TACGTTAGGACACAACATATTGAATTCTCGATGACAAGTTTTATTTTGTTTGATTAAAGAGCAAT
131 TACGTTAGGACACAACATATTGAATTCTCGATGACAAGTTTTATTTTGTTTGATTAAAGAGCAAT
37316128 TCTCGATTGTTAGATTTAACGAAGAAAATCGGAACCCAATACGTTAGGGCTCAATCTTCTCGAAA
196 TCTCGATTGTTAGATTTAACGAAGAAAATCGGAACCCAATACGTTAGGGCTCAATCTTCTCGAAA
37316193 ATCCTAAATACGAGTATTATTTCTATTTTGAAA
261 ATCCTAAATACGAGTATTATTTCTATTTTGAAA
37316226 TGTTTAAAATTTATGAAGAAATCGCAGCCCAATACGTTAAGGGCACAA-TTCCTAAAATCCCAAA
1 TGTTTAAAATTTATGAAGAAATCGCAGCCCAATACGTT-AGGGCACAATTTCCTAAAATCCCAAA
37316290 CATTCAATATTTCCTTTATTTTTTTTAAAAAATCCTTGTCTCGAAAAATCAACGTGTCACATCCA
65 CATTCAATATTTCCTTTATTTTTTTTAAAAAATCCTTGTCTCGAAAAATCAACGTGTCACATCCA
37316355 ATACGTTAGGACACAACATATTGAATTCTCGATGACAAGTTTTATTTTGTTTGATTAAAGAGCAA
130 ATACGTTAGGACACAACATATTGAATTCTCGATGACAAGTTTTATTTTGTTTGATTAAAGAGCAA
37316420 TTCTCGATTGTTAGATTTAACGAAGAAAATCGGAACCCAATACGTTAGGGCTCAATCTTCTCGAA
195 TTCTCGATTGTTAGATTTAACGAAGAAAATCGGAACCCAATACGTTAGGGCTCAATCTTCTCGAA
37316485 AATCCTAAATACGAGTATTATTTCTATTTTGAAA
260 AATCCTAAATACGAGTATTATTTCTATTTTGAAA
37316519 ATTTTCATTT
Statistics
Matches: 292, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
293 283 0.97
294 9 0.03
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34
Consensus pattern (293 bp):
TGTTTAAAATTTATGAAGAAATCGCAGCCCAATACGTTAGGGCACAATTTCCTAAAATCCCAAAC
ATTCAATATTTCCTTTATTTTTTTTAAAAAATCCTTGTCTCGAAAAATCAACGTGTCACATCCAA
TACGTTAGGACACAACATATTGAATTCTCGATGACAAGTTTTATTTTGTTTGATTAAAGAGCAAT
TCTCGATTGTTAGATTTAACGAAGAAAATCGGAACCCAATACGTTAGGGCTCAATCTTCTCGAAA
ATCCTAAATACGAGTATTATTTCTATTTTGAAA
Found at i:37321362 original size:114 final size:112
Alignment explanation
Indices: 37321218--37321664 Score: 413
Period size: 114 Copynumber: 3.9 Consensus size: 112
37321208 TTTACCACGC
* * * * *
37321218 AGCGCCGCAAAATATC-AAGACCAACACGCAGCGTTCTGGTCTTGATGTATATTGGCATTAGTGG
1 AGCGCCGCAAAATATCTTA-ACCAAAACGCAGAGTT-TGGTCTTGATGTATATTAGAATTAGTGG
* * *
37321282 CGCTTATGAACAAACGCCGGTAATGTACAGTATTAGCGGCGCTTAGCGAA
64 CGCTTATGAA-AAACGCCGCTAAAGTATAGTATTAGCGGCGCTTAGCGAA
* * *
37321332 AGCGCCGCAAAAGATGTTAACCAAAACGCAGAGTTTAGTCTTGATGTATATT-GCAATTAGTGGC
1 AGCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTGGTCTTGATGTATATTAG-AATTAGTGGC
* * **
37321396 GCTTATAAAGAAAACGCCGCTAATGTATAGTATTAGCGGCGCAGAGCGTTAA
65 GCTTAT-GA-AAAACGCCGCTAAAGTATAGTATTAGCGGCGCTTAGCG--AA
* * * * * *
37321448 A-CGCCGCAAGATATCTTAATCAAAACGCACCATTTTGGTCTTGATGTATACTATAATTAGTGGC
1 AGCGCCGCAAAATATCTTAACCAAAACGCA-GAGTTTGGTCTTGATGTATATTAGAATTAGTGGC
* * * * * * * * *
37321512 GTTTAAGGAAAATGCCAG-TAAAGGATAGTTATTAGCAGCG-TTTGTGGTA
65 GCTTATGAAAAACGCC-GCTAAAGTATAG-TATTAGCGGCGCTTAG-CGAA
* * *
37321561 AGCGCCTCCAAATATCTTAACCAAAACGCAGAGTTTGGTCTTGA-GGAGTATTAGAATTAGTGGC
1 AGCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTGGTCTTGATGTA-TATTAGAATTAGTGGC
37321625 GCTTGATGAAAAACGCCGCTAAAGTATA-TCATTAGCGGCG
65 GCTT-ATGAAAAACGCCGCTAAAGTATAGT-ATTAGCGGCG
37321665 TCCAGTATAC
Statistics
Matches: 268, Mismatches: 49, Indels: 33
0.77 0.14 0.09
Matches are distributed among these distances:
112 4 0.01
113 72 0.27
114 119 0.44
115 38 0.14
116 35 0.13
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (112 bp):
AGCGCCGCAAAATATCTTAACCAAAACGCAGAGTTTGGTCTTGATGTATATTAGAATTAGTGGCG
CTTATGAAAAACGCCGCTAAAGTATAGTATTAGCGGCGCTTAGCGAA
Found at i:37322143 original size:20 final size:20
Alignment explanation
Indices: 37322118--37322155 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
37322108 GATTGATTTG
37322118 TAATTT-ATATATATATTAAA
1 TAATTTCATATATA-ATTAAA
37322138 TAATTTCATATATAATTA
1 TAATTTCATATATAATTA
37322156 GAAAAGATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (20 bp):
TAATTTCATATATAATTAAA
Found at i:37322957 original size:7 final size:7
Alignment explanation
Indices: 37322947--37323014 Score: 59
Period size: 7 Copynumber: 9.9 Consensus size: 7
37322937 TTACTGTTCG
37322947 GGGTTTT
1 GGGTTTT
*
37322954 GGGTTTA
1 GGGTTTT
37322961 GGG-TTT
1 GGGTTTT
*
37322967 GGGGTTT
1 GGGTTTT
*
37322974 GGGTTTA
1 GGGTTTT
*
37322981 GGGTTTA
1 GGGTTTT
37322988 GGG-TTT
1 GGGTTTT
*
37322994 GGGGTTT
1 GGGTTTT
*
37323001 GGTTTTT
1 GGGTTTT
37323008 GAGGTTT
1 G-GGTTT
37323015 AAGGATTACA
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
6 10 0.20
7 36 0.72
8 4 0.08
ACGTcount: A:0.06, C:0.00, G:0.46, T:0.49
Consensus pattern (7 bp):
GGGTTTT
Found at i:37322966 original size:14 final size:14
Alignment explanation
Indices: 37322947--37323000 Score: 83
Period size: 14 Copynumber: 3.9 Consensus size: 14
37322937 TTACTGTTCG
*
37322947 GGGTTTTGGGTTTA
1 GGGTTTGGGGTTTA
37322961 GGGTTTGGGGTTT-
1 GGGTTTGGGGTTTA
*
37322974 GGGTTTAGGGTTTA
1 GGGTTTGGGGTTTA
37322988 GGGTTTGGGGTTT
1 GGGTTTGGGGTTT
37323001 GGTTTTTGAG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
13 12 0.33
14 24 0.67
ACGTcount: A:0.06, C:0.00, G:0.48, T:0.46
Consensus pattern (14 bp):
GGGTTTGGGGTTTA
Found at i:37322976 original size:20 final size:20
Alignment explanation
Indices: 37322946--37322996 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
37322936 TTTACTGTTC
37322946 GGGGTTTTGGGTTTAGGGTTT
1 GGGG-TTTGGGTTTAGGGTTT
37322967 GGGGTTTGGGTTTAGGGTTT
1 GGGGTTTGGGTTTAGGGTTT
*
37322987 AGGGTTTGGG
1 GGGGTTTGGG
37322997 GTTTGGTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 25 0.86
21 4 0.14
ACGTcount: A:0.06, C:0.00, G:0.51, T:0.43
Consensus pattern (20 bp):
GGGGTTTGGGTTTAGGGTTT
Found at i:37322979 original size:27 final size:27
Alignment explanation
Indices: 37322947--37323015 Score: 111
Period size: 27 Copynumber: 2.5 Consensus size: 27
37322937 TTACTGTTCG
37322947 GGGTTTTGGGTTTAGGGTTTGGGGTTT
1 GGGTTTTGGGTTTAGGGTTTGGGGTTT
*
37322974 GGGTTTAGGGTTTAGGGTTTGGGGTTT
1 GGGTTTTGGGTTTAGGGTTTGGGGTTT
*
37323001 GGTTTTTGAGGTTTA
1 GGGTTTTG-GGTTTA
37323016 AGGATTACAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 32 0.84
28 6 0.16
ACGTcount: A:0.07, C:0.00, G:0.45, T:0.48
Consensus pattern (27 bp):
GGGTTTTGGGTTTAGGGTTTGGGGTTT
Found at i:37323663 original size:147 final size:147
Alignment explanation
Indices: 37323512--37323792 Score: 318
Period size: 147 Copynumber: 1.9 Consensus size: 147
37323502 ATTATGTTTA
** * * *
37323512 TTGAAATGTTTTCGTTTTTGTCTATTG-TATTAGTGGC-GTTTGTCAGAAACGCCACAACATTG-
1 TTGAAATGTTGCCG-TTTTGT-TAATGTTATTAGTGGCAGTTTATCAAAAACGCCACAACATTGA
* **** *
37323574 GGTAAACTGTTGGGGAAACGGGTTCGTTTTGAGTTATAGTTAGTGGCGCTTTA-CTTAAAACGCC
64 GGT-AACTGTTGAGGAAACGACCGCGTTTTGAGTGATAGTTAGTGGCGC-TTAGCTTAAAACGCC
37323638 GCAAAATTGTTCAAACATTTG
127 GCAAAATTGTTCAAACATTTG
* ****
37323659 TTGAAATGTTGCCGTTTTGTTAATGTTATTAGTGGCATTTTATCAAAAACGCCACGGGTTTGAGG
1 TTGAAATGTTGCCGTTTTGTTAATGTTATTAGTGGCAGTTTATCAAAAACGCCACAACATTGAGG
* * * *
37323724 TAAGTGTTGATGAAGCGACCGCGTTTTGAGTGATAGTTAGTGGCGCTTAGTTTAAAACGCCGCAA
66 TAACTGTTGAGGAAACGACCGCGTTTTGAGTGATAGTTAGTGGCGCTTAGCTTAAAACGCCGCAA
37323789 AATT
131 AATT
37323793 TTGACCTATA
Statistics
Matches: 110, Mismatches: 20, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
145 4 0.04
146 19 0.17
147 84 0.76
148 3 0.03
ACGTcount: A:0.26, C:0.14, G:0.25, T:0.36
Consensus pattern (147 bp):
TTGAAATGTTGCCGTTTTGTTAATGTTATTAGTGGCAGTTTATCAAAAACGCCACAACATTGAGG
TAACTGTTGAGGAAACGACCGCGTTTTGAGTGATAGTTAGTGGCGCTTAGCTTAAAACGCCGCAA
AATTGTTCAAACATTTG
Found at i:37325354 original size:15 final size:16
Alignment explanation
Indices: 37325319--37325351 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
37325309 GTATTTATAA
*
37325319 TTATCGATTTGCAATT
1 TTATCGATTTACAATT
37325335 TTATCGATTTACAATT
1 TTATCGATTTACAATT
37325351 T
1 T
37325352 ATCCGGTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.12, G:0.09, T:0.52
Consensus pattern (16 bp):
TTATCGATTTACAATT
Found at i:37335797 original size:42 final size:42
Alignment explanation
Indices: 37335738--37335941 Score: 372
Period size: 42 Copynumber: 4.9 Consensus size: 42
37335728 CTAAAAGCTA
*
37335738 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTGTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGC
*
37335780 GCCGCTAAAGAACATGGTCTTTAGAGGCGTTTTTTTCTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGC
*
37335822 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTGTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGC
*
37335864 GCCGCTAAAGAACATGGTCTTTAGAGGCGTTTTTTTCTAAGC
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGC
37335906 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTT
1 GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTT
37335942 TTTGTAAACG
Statistics
Matches: 155, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 155 1.00
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.34
Consensus pattern (42 bp):
GCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAGC
Found at i:37337064 original size:29 final size:29
Alignment explanation
Indices: 37337018--37337078 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
37337008 GTTAGTGATT
*
37337018 TGTGAAAATTGAATC-AAATCAAAATTTCA
1 TGTGAAAATTGAATCAAAATC-AAAGTTCA
*
37337047 TGTGCAAAATTGCA-CAAAATCAAAGTTCA
1 TGTG-AAAATTGAATCAAAATCAAAGTTCA
37337076 TGT
1 TGT
37337079 ATAACATTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
29 15 0.54
30 13 0.46
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.30
Consensus pattern (29 bp):
TGTGAAAATTGAATCAAAATCAAAGTTCA
Found at i:37343792 original size:64 final size:64
Alignment explanation
Indices: 37343724--37344065 Score: 157
Period size: 64 Copynumber: 5.2 Consensus size: 64
37343714 GTTAAGCTTC
37343724 GCTGATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATTAAAAATCTTATCTGAGTTA
1 GCTGATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATTAAAAATCTTATCTGAGTTA
* * * * * * * *
37343788 GCTGATTTTATATCACTACTCTAAATAGCTCGTT-GATTTAATATTGCAGCT-GATATCGTTA--
1 GCTGATTTAATATCGCAAC-CT--A-AGTTCATTCGATTTAATA-T-CA-TTAAAAATC-TTATC
*
37343849 AG-GTTCA
58 TGAGTT-A
* ** * * *
37343856 -CTAATTTAATATCGCAACCTAAGTTCATTTAATTTAATATCATGAACAATCTTATCTGAGTGA
1 GCTGATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATTAAAAATCTTATCTGAGTTA
* * * *** * * *
37343919 ACTGATTTAATATCCCTACTCTAA-AAAACTCGCTGATTTAATATCTCAATT-GATATCGTTA--
1 GCTGATTTAATATCGCAAC-CTAAGTTCA-T-TC-GATTTAATA--TC-ATTAAAAATC-TTATC
* *
37343980 AG-GTTC
58 TGAGTTA
* * * * * *
37343986 GCTGATTTAAGATCACAACCTAAGTTCATTTGATTTAATATCATGAACAATATTATCTGAGTTA
1 GCTGATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATTAAAAATCTTATCTGAGTTA
*
37344050 GTTGATTTAATATCGC
1 GCTGATTTAATATCGC
37344066 TACTCTAAAC
Statistics
Matches: 192, Mismatches: 58, Indels: 56
0.63 0.19 0.18
Matches are distributed among these distances:
61 8 0.04
62 9 0.05
63 10 0.05
64 68 0.35
65 7 0.04
66 7 0.04
67 53 0.28
68 10 0.05
69 11 0.06
70 9 0.05
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (64 bp):
GCTGATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATTAAAAATCTTATCTGAGTTA
Found at i:37344127 original size:131 final size:131
Alignment explanation
Indices: 37343650--37344128 Score: 636
Period size: 131 Copynumber: 3.7 Consensus size: 131
37343640 TAATTATCTT
* * * *
37343650 TGAGCTAGTTGATTTAATACCGCTACTCTAAATAGCTCGTTGATTTAATATCGCAGCTAATAAT-
1 TGAGTTAGCTGATTTAATATCGCTACTCTAAATAGCTCGTTGATTTAATATCGCAGCTGAT-ATC
* * * * *
37343714 GTTAAGCTTCGCTGATTTAATATCGCAACCTAAGTTCATTCGATTTAATATCATTAAAAATCTTA
65 GTTAAGGTTCGCTGATTTAAGATCGCAACCTAAGTTCATTTGATTTAATATCATGAACAATCTTA
37343779 TC
130 TC
* * *
37343781 TGAGTTAGCTGATTTTATATCACTACTCTAAATAGCTCGTTGATTTAATATTGCAGCTGATATCG
1 TGAGTTAGCTGATTTAATATCGCTACTCTAAATAGCTCGTTGATTTAATATCGCAGCTGATATCG
* * * *
37343846 TTAAGGTTCACTAATTTAATATCGCAACCTAAGTTCATTTAATTTAATATCATGAACAATCTTAT
66 TTAAGGTTCGCTGATTTAAGATCGCAACCTAAGTTCATTTGATTTAATATCATGAACAATCTTAT
37343911 C
131 C
* * * * * * * **
37343912 TGAGTGAACTGATTTAATATCCCTACTCTAAAAAACTCGCTGATTTAATATCTCAATTGATATCG
1 TGAGTTAGCTGATTTAATATCGCTACTCTAAATAGCTCGTTGATTTAATATCGCAGCTGATATCG
* *
37343977 TTAAGGTTCGCTGATTTAAGATCACAACCTAAGTTCATTTGATTTAATATCATGAACAATATTAT
66 TTAAGGTTCGCTGATTTAAGATCGCAACCTAAGTTCATTTGATTTAATATCATGAACAATCTTAT
37344042 C
131 C
* * * * * * *
37344043 TGAGTTAGTTGATTTAATATCGCTACTCTAAACAGCTTGTTGATTTAAGATCGTAGTTGATATCA
1 TGAGTTAGCTGATTTAATATCGCTACTCTAAATAGCTCGTTGATTTAATATCGCAGCTGATATCG
37344108 TTAAGGTTCGCTGATTTAAGA
66 TTAAGGTTCGCTGATTTAAGA
37344129 CAACCTCTCT
Statistics
Matches: 303, Mismatches: 44, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
130 2 0.01
131 301 0.99
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (131 bp):
TGAGTTAGCTGATTTAATATCGCTACTCTAAATAGCTCGTTGATTTAATATCGCAGCTGATATCG
TTAAGGTTCGCTGATTTAAGATCGCAACCTAAGTTCATTTGATTTAATATCATGAACAATCTTAT
C
Found at i:37362456 original size:25 final size:24
Alignment explanation
Indices: 37362408--37362466 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 24
37362398 TTTTGAAAAG
* *
37362408 TTTTAATTTAATTTGATTTGATTT
1 TTTTAATTTAATTTAATCTGATTT
37362432 TTTATAATTTAATTTAAATCT-ATTT
1 TTT-TAATTTAATTT-AATCTGATTT
37362457 TTTTAATTTA
1 TTTTAATTTA
37362467 GTTGTATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
24 10 0.32
25 18 0.58
26 3 0.10
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (24 bp):
TTTTAATTTAATTTAATCTGATTT
Found at i:37365608 original size:18 final size:18
Alignment explanation
Indices: 37365585--37365619 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
37365575 ATGAATAATC
37365585 TTTTAAGAA-TTTTAAAAT
1 TTTTAA-AATTTTTAAAAT
37365603 TTTTAAAATTTTTAAAA
1 TTTTAAAATTTTTAAAA
37365620 ACTTGTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
TTTTAAAATTTTTAAAAT
Found at i:37368078 original size:20 final size:21
Alignment explanation
Indices: 37368044--37368094 Score: 59
Period size: 20 Copynumber: 2.4 Consensus size: 21
37368034 TTTTTAAAAA
** *
37368044 CTTTTTCCATTTTTTTC-TTT
1 CTTTTTCCAGGTTTTCCTTTT
37368064 CTTTTTCCAGGTTTTCCTTTT
1 CTTTTTCCAGGTTTTCCTTTT
37368085 CTTCTTTCCA
1 CTT-TTTCCA
37368095 ATTTCCATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 14 0.54
21 6 0.23
22 6 0.23
ACGTcount: A:0.06, C:0.25, G:0.04, T:0.65
Consensus pattern (21 bp):
CTTTTTCCAGGTTTTCCTTTT
Found at i:37375420 original size:4 final size:4
Alignment explanation
Indices: 37375402--37375435 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
37375392 TTTTTGGCTC
37375402 ATTT ATTTT ATTTT ATTT ATTT ATTT ATTT ATTT
1 ATTT A-TTT A-TTT ATTT ATTT ATTT ATTT ATTT
37375436 TTAAAGAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
4 20 0.69
5 9 0.31
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
ATTT
Found at i:37379769 original size:17 final size:16
Alignment explanation
Indices: 37379736--37379773 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
37379726 AAAATCGAAA
37379736 AAAATATAAAATATAT
1 AAAATATAAAATATAT
37379752 AGAAATATAAAA-ATTAT
1 A-AAATATAAAATA-TAT
37379769 AAAAT
1 AAAAT
37379774 TTTATAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (16 bp):
AAAATATAAAATATAT
Found at i:37379794 original size:54 final size:56
Alignment explanation
Indices: 37379706--37379817 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 56
37379696 GAAATTTAAA
* *
37379706 AAAAATTGTAAAATTTTATAAAAATCGAAAAAAA-TAT-AAAATATATAGAAATAT
1 AAAAATTATAAAATTTTATAAAAATCGAAAAAAATTATAAAAATATAAAGAAATAT
* * *
37379760 AAAAATTATAAAATTTTAT-AAAGTCGTAAGAAAATTATACAAAATGTAAAGAAATAT
1 AAAAATTATAAAATTTTATAAAAATCG-AAAAAAATTATA-AAAATATAAAGAAATAT
37379817 A
1 A
37379818 TATTTCGTAA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
53 6 0.12
54 24 0.49
55 3 0.06
57 16 0.33
ACGTcount: A:0.61, C:0.03, G:0.07, T:0.29
Consensus pattern (56 bp):
AAAAATTATAAAATTTTATAAAAATCGAAAAAAATTATAAAAATATAAAGAAATAT
Found at i:37380066 original size:29 final size:29
Alignment explanation
Indices: 37380011--37380069 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 29
37380001 TTTTTGATGC
* *
37380011 ATTTTATATTTTTTTATGATTTTTATAAA
1 ATTTTATATTTTTTTAAGATTTCTATAAA
37380040 ATTTTATATTTTTTTACAG-TTTCTATAAA
1 ATTTTATATTTTTTTA-AGATTTCTATAAA
37380069 A
1 A
37380070 AATTTCTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
29 26 0.96
30 1 0.04
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.61
Consensus pattern (29 bp):
ATTTTATATTTTTTTAAGATTTCTATAAA
Found at i:37380072 original size:31 final size:29
Alignment explanation
Indices: 37380011--37380083 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 29
37380001 TTTTTGATGC
* *
37380011 ATTTTATATTTTTTTATGATTTTTATAAA
1 ATTTTATATTTTTTTAAGATTTTTAAAAA
37380040 ATTTTATATTTTTTTACAG-TTTCTATAAAAA
1 ATTTTATATTTTTTTA-AGATTT-T-TAAAAA
37380071 ATTTCTA-ATTTTT
1 ATTT-TATATTTTT
37380084 AACGAAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
29 19 0.50
30 2 0.05
31 15 0.39
32 2 0.05
ACGTcount: A:0.32, C:0.04, G:0.03, T:0.62
Consensus pattern (29 bp):
ATTTTATATTTTTTTAAGATTTTTAAAAA
Found at i:37396494 original size:54 final size:54
Alignment explanation
Indices: 37396383--37396508 Score: 137
Period size: 54 Copynumber: 2.3 Consensus size: 54
37396373 GGACACAAGA
* * * * *
37396383 CTGTGTCCCAGCTCATGTCTCTGCCCATGTAACTCTCTGACTTGAGATACACGG
1 CTGTGTCCCAGCCCGTGTCTCTGACCATGTAACTCACTGACTTGAGATACACAG
* * * *
37396437 CTGTATCCCAGCCCGTGTCTCTGACCGTGTAACTCACTGACTT-AGGTCACATAG
1 CTGTGTCCCAGCCCGTGTCTCTGACCATGTAACTCACTGACTTGAGAT-ACACAG
* *
37396491 CTGTGTCGCAGGCCGTGT
1 CTGTGTCCCAGCCCGTGT
37396509 GTCAACCCAT
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 3 0.05
54 56 0.95
ACGTcount: A:0.17, C:0.31, G:0.23, T:0.29
Consensus pattern (54 bp):
CTGTGTCCCAGCCCGTGTCTCTGACCATGTAACTCACTGACTTGAGATACACAG
Found at i:37409497 original size:14 final size:15
Alignment explanation
Indices: 37409478--37409509 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
37409468 GTGGTTATAG
37409478 TTAAAATA-ATAAAA
1 TTAAAATAGATAAAA
37409492 TTAAAATAGATAAAA
1 TTAAAATAGATAAAA
37409507 TTA
1 TTA
37409510 TGATGTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
TTAAAATAGATAAAA
Found at i:37423402 original size:43 final size:42
Alignment explanation
Indices: 37423333--37423418 Score: 109
Period size: 43 Copynumber: 2.0 Consensus size: 42
37423323 AAGGCATAGA
* * * * *
37423333 GAAAAGAGGAATCAGTAGTTCTTTTAATGTCGTCCCTTGCAT
1 GAAAAGAGAAATCAATAGCTCCTTTAATGTCGTCCCATGCAT
*
37423375 GAAAAGGAGAAATCAATAGCTCCTTTAATGTCGTCTCATGCAT
1 GAAAA-GAGAAATCAATAGCTCCTTTAATGTCGTCCCATGCAT
37423418 G
1 G
37423419 CTTTCTTTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 5 0.14
43 32 0.86
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.30
Consensus pattern (42 bp):
GAAAAGAGAAATCAATAGCTCCTTTAATGTCGTCCCATGCAT
Found at i:37428300 original size:13 final size:13
Alignment explanation
Indices: 37428282--37428306 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37428272 TCCAGCAACT
37428282 ATGAATTTATTTC
1 ATGAATTTATTTC
37428295 ATGAATTTATTT
1 ATGAATTTATTT
37428307 GATGTTGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.08, T:0.56
Consensus pattern (13 bp):
ATGAATTTATTTC
Found at i:37428517 original size:50 final size:50
Alignment explanation
Indices: 37428405--37428703 Score: 391
Period size: 50 Copynumber: 5.8 Consensus size: 50
37428395 ATTTGGGTAA
* *
37428405 AGAGATCCCATGTAAGACCATGTCTGGGGCATGGCATTGGCATCCTTGAGATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAGAT---G
* *
37428461 ATAGGTCTCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
37428511 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * *
37428561 AAAGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * *
37428611 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGTATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** *
37428661 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
37428704 TGTANNNNNN
Statistics
Matches: 218, Mismatches: 24, Indels: 7
0.88 0.10 0.03
Matches are distributed among these distances:
50 139 0.64
51 34 0.16
53 5 0.02
55 2 0.01
56 38 0.17
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:37441566 original size:5 final size:5
Alignment explanation
Indices: 37441556--37441586 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
37441546 TGGGCAATTG
37441556 GGTGC GGTGC GGTGC GGTGC GGTGC GGTGC G
1 GGTGC GGTGC GGTGC GGTGC GGTGC GGTGC G
37441587 TTTAGTTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.00, C:0.19, G:0.61, T:0.19
Consensus pattern (5 bp):
GGTGC
Found at i:37443122 original size:16 final size:16
Alignment explanation
Indices: 37443101--37443133 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
37443091 TTCGCTGTAT
37443101 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
37443117 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
37443133 T
1 T
37443134 AGCAATTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.36, T:0.21
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:37443201 original size:44 final size:45
Alignment explanation
Indices: 37443113--37443202 Score: 139
Period size: 45 Copynumber: 2.0 Consensus size: 45
37443103 GAATAGAGGC
37443113 GTAATGGAATAGAGGCGTAATAGCAATTCTATTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGCAATTCTATTGTTTGGTTGAAT
* *
37443158 GTAATGGAATAGAGGTGTAATAG-TATTCT-TCTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGCAATTCTAT-TGTTTGGTTGAAT
37443202 G
1 G
37443203 GAATAGAGGC
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 19 0.45
45 22 0.52
ACGTcount: A:0.29, C:0.06, G:0.28, T:0.38
Consensus pattern (45 bp):
GTAATGGAATAGAGGCGTAATAGCAATTCTATTGTTTGGTTGAAT
Found at i:37443218 original size:39 final size:43
Alignment explanation
Indices: 37443113--37443221 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
37443103 GAATAGAGGC
37443113 GTAATGGAATAGAGGCGTAATAGCAATTCTATTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGCAATTCTATTGTTTGGTT--AT
* *
37443158 GTAATGGAATAGAGGTGTAATAG-TATTCT-TCTGTTTGG-T-T
1 GTAATGGAATAGAGGCGTAATAGCAATTCTAT-TGTTTGGTTAT
*
37443198 G-AATGGAATAGAGGCATAATAGCA
1 GTAATGGAATAGAGGCGTAATAGCA
37443222 TAAAGAAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
39 19 0.33
40 2 0.04
43 2 0.04
44 12 0.21
45 22 0.39
ACGTcount: A:0.32, C:0.06, G:0.28, T:0.34
Consensus pattern (43 bp):
GTAATGGAATAGAGGCGTAATAGCAATTCTATTGTTTGGTTAT
Found at i:37446583 original size:77 final size:78
Alignment explanation
Indices: 37446460--37446615 Score: 289
Period size: 77 Copynumber: 2.0 Consensus size: 78
37446450 ATTATAAAAT
37446460 ACTTTATGTTAAATATTTGAATTATAAATGATAATATATATAAACAAAATTTCACT-ATCTTGAA
1 ACTTTATGTTAAATATTTGAATTATAAATGATAATATATATAAACAAAATTTCACTAATCTTG-A
37446524 ATTT-ATCTTTAAA
65 ATTTAATCTTTAAA
37446537 ACTTTATGTTAAATATTTGAATTATAAATGATAATATATATAAACAAAATTTCACTAATCTTGAA
1 ACTTTATGTTAAATATTTGAATTATAAATGATAATATATATAAACAAAATTTCACTAATCTTGAA
37446602 TTTAATCTTTAAA
66 TTTAATCTTTAAA
37446615 A
1 A
37446616 ATATTATTTA
Statistics
Matches: 77, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
77 61 0.79
78 16 0.21
ACGTcount: A:0.45, C:0.08, G:0.05, T:0.42
Consensus pattern (78 bp):
ACTTTATGTTAAATATTTGAATTATAAATGATAATATATATAAACAAAATTTCACTAATCTTGAA
TTTAATCTTTAAA
Found at i:37447411 original size:24 final size:24
Alignment explanation
Indices: 37447361--37447412 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
37447351 TTTCTAGAAG
* *
37447361 ATTTAGTATTTATTAGTATATTAT
1 ATTTAGCATTTATTAGCATATTAT
37447385 ATTTAGCATTTATTAGCATACTT-T
1 ATTTAGCATTTATTAGCATA-TTAT
37447409 ATTT
1 ATTT
37447413 GGCTTACGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 23 0.92
25 2 0.08
ACGTcount: A:0.31, C:0.06, G:0.08, T:0.56
Consensus pattern (24 bp):
ATTTAGCATTTATTAGCATATTAT
Found at i:37449048 original size:24 final size:24
Alignment explanation
Indices: 37449021--37449069 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
37449011 CTAGAAGATC
*
37449021 TAGTATTTATTAGTATAATATATT
1 TAGTATTTATTAGCATAATATATT
*
37449045 TAGTATTTATTAGCATAATTTATT
1 TAGTATTTATTAGCATAATATATT
37449069 T
1 T
37449070 TACCTATGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.55
Consensus pattern (24 bp):
TAGTATTTATTAGCATAATATATT
Found at i:37455387 original size:69 final size:69
Alignment explanation
Indices: 37455272--37455427 Score: 278
Period size: 69 Copynumber: 2.3 Consensus size: 69
37455262 CTGCAACCAG
* *
37455272 AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTTTATGAAGAAGAAGCAAGCAATAA
1 AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTGTATGAAGAAAAAGCAAGCAATAA
37455337 TTAA
66 TTAA
37455341 AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTGTATGAAGAAAAAGCAAGCAATAA
1 AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTGTATGAAGAAAAAGCAAGCAATAA
37455406 TTAA
66 TTAA
37455410 AATTCAGAG-CAATTTCCG
1 AATTCAGAGTC-ATTTCCG
37455428 GCAGCAAAAA
Statistics
Matches: 84, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
68 1 0.01
69 83 0.99
ACGTcount: A:0.39, C:0.12, G:0.22, T:0.27
Consensus pattern (69 bp):
AATTCAGAGTCATTTCCGTGGTTGGCAGTTAAGAAGGAATTGTATGAAGAAAAAGCAAGCAATAA
TTAA
Found at i:37461762 original size:22 final size:22
Alignment explanation
Indices: 37461734--37461778 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
37461724 ACTTGAGAGA
37461734 ACAACAACGTTGTCATATATTT
1 ACAACAACGTTGTCATATATTT
*
37461756 ACAACAATGTTGTCATATATTT
1 ACAACAACGTTGTCATATATTT
37461778 A
1 A
37461779 AGAAGAAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (22 bp):
ACAACAACGTTGTCATATATTT
Found at i:37471954 original size:39 final size:40
Alignment explanation
Indices: 37471911--37471995 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
37471901 CACGTCAAGA
* * *
37471911 AAAAAAAT-CACATAAAAATGTTTAAAAATATAAAAATAT
1 AAAAAAATCCACACAAAAATATTTAAAAATAGAAAAATAT
* * * *
37471950 AAAAAAATCCACCCCAAAATATTTAAAATTAGAAAATTAT
1 AAAAAAATCCACACAAAAATATTTAAAAATAGAAAAATAT
37471990 AAAAAA
1 AAAAAA
37471996 TAAAAAATCA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
39 8 0.21
40 30 0.79
ACGTcount: A:0.65, C:0.09, G:0.02, T:0.24
Consensus pattern (40 bp):
AAAAAAATCCACACAAAAATATTTAAAAATAGAAAAATAT
Found at i:37471994 original size:17 final size:17
Alignment explanation
Indices: 37471974--37472034 Score: 59
Period size: 17 Copynumber: 3.5 Consensus size: 17
37471964 CAAAATATTT
*
37471974 AAAATTAGAAAATTATA
1 AAAATTAAAAAATTATA
* *
37471991 AAAAATAAAAAATCATA
1 AAAATTAAAAAATTATA
* *
37472008 ATATATTTAAAAAAGTATA
1 A-A-AATTAAAAAATTATA
37472027 AAAATTAA
1 AAAATTAA
37472035 GTTTATAAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
17 20 0.59
18 2 0.06
19 12 0.35
ACGTcount: A:0.67, C:0.02, G:0.03, T:0.28
Consensus pattern (17 bp):
AAAATTAAAAAATTATA
Found at i:37473552 original size:14 final size:15
Alignment explanation
Indices: 37473533--37473564 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
37473523 GTGGTTATAG
37473533 TTAAAATA-ATAAAA
1 TTAAAATAGATAAAA
37473547 TTAAAATAGATAAAA
1 TTAAAATAGATAAAA
37473562 TTA
1 TTA
37473565 TGATGTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
TTAAAATAGATAAAA
Found at i:37476924 original size:21 final size:21
Alignment explanation
Indices: 37476900--37477029 Score: 89
Period size: 21 Copynumber: 6.2 Consensus size: 21
37476890 ATAAGGGTTG
* *
37476900 AACGGAAGCTCGTAAGAGCTA
1 AACGGAAACTCATAAGAGCTA
* * *
37476921 AACGGAAACCCATAAGGGTTA
1 AACGGAAACTCATAAGAGCTA
* * * *
37476942 AACAGAAGCTCAAAAGAGCTG
1 AACGGAAACTCATAAGAGCTA
* * * *
37476963 AACGGAAACCCATTAGGGTTA
1 AACGGAAACTCATAAGAGCTA
* * *
37476984 AATGGAAACTCATATGAGTTA
1 AACGGAAACTCATAAGAGCTA
* * *
37477005 AACAGAAGCTCGTAAGAGCTA
1 AACGGAAACTCATAAGAGCTA
37477026 AACG
1 AACG
37477030 AAAAGTAAAC
Statistics
Matches: 77, Mismatches: 32, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
21 77 1.00
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.16
Consensus pattern (21 bp):
AACGGAAACTCATAAGAGCTA
Found at i:37476930 original size:42 final size:42
Alignment explanation
Indices: 37476883--37476985 Score: 152
Period size: 42 Copynumber: 2.5 Consensus size: 42
37476873 AGTGTTAACA
* * **
37476883 GAAACCCATAAGGGTTGAACGGAAGCTCGTAAGAGCTAAACG
1 GAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTAAACG
*
37476925 GAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTGAACG
1 GAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTAAACG
*
37476967 GAAACCCATTAGGGTTAAA
1 GAAACCCATAAGGGTTAAA
37476986 TGGAAACTCA
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.42, C:0.18, G:0.25, T:0.15
Consensus pattern (42 bp):
GAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGCTAAACG
Found at i:37476967 original size:63 final size:63
Alignment explanation
Indices: 37476898--37477029 Score: 147
Period size: 63 Copynumber: 2.1 Consensus size: 63
37476888 CCATAAGGGT
* * * *
37476898 TGAACGGAAGCTCGTAAGAGCTAAACGGAAACCCATAAGGGTTAAACAGAAGCTCAAAAGAGC
1 TGAACGGAAACCCATAAGAGCTAAACGGAAACCCATAAGAGTTAAACAGAAGCTCAAAAGAGC
* * * * * * **
37476961 TGAACGGAAACCCATTAGGGTTAAATGGAAACTCATATGAGTTAAACAGAAGCTCGTAAGAGC
1 TGAACGGAAACCCATAAGAGCTAAACGGAAACCCATAAGAGTTAAACAGAAGCTCAAAAGAGC
*
37477024 TAAACG
1 TGAACG
37477030 AAAAGTAAAC
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
63 56 1.00
ACGTcount: A:0.42, C:0.17, G:0.24, T:0.17
Consensus pattern (63 bp):
TGAACGGAAACCCATAAGAGCTAAACGGAAACCCATAAGAGTTAAACAGAAGCTCAAAAGAGC
Found at i:37483903 original size:19 final size:19
Alignment explanation
Indices: 37483879--37483915 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
37483869 TATTTTTTTA
37483879 CTTAAAAA-ATTCAAAATTC
1 CTTAAAAATATT-AAAATTC
37483898 CTTAAAAATATTAAAATT
1 CTTAAAAATATTAAAATT
37483916 TTCATAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 14 0.82
20 3 0.18
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.35
Consensus pattern (19 bp):
CTTAAAAATATTAAAATTC
Found at i:37484575 original size:43 final size:43
Alignment explanation
Indices: 37484526--37484618 Score: 150
Period size: 43 Copynumber: 2.2 Consensus size: 43
37484516 ATAAAATGTT
37484526 AGAATTTTATGAAAAAATTTAAAAATTTATGTATTGTTTTGAG
1 AGAATTTTATGAAAAAATTTAAAAATTTATGTATTGTTTTGAG
***
37484569 AGAATTTTATGAAATTTTTTAAAAATTTATGTATTGTTTTGAG
1 AGAATTTTATGAAAAAATTTAAAAATTTATGTATTGTTTTGAG
*
37484612 AAAATTT
1 AGAATTT
37484619 AGGGTTTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.40, C:0.00, G:0.13, T:0.47
Consensus pattern (43 bp):
AGAATTTTATGAAAAAATTTAAAAATTTATGTATTGTTTTGAG
Found at i:37484615 original size:22 final size:22
Alignment explanation
Indices: 37484547--37484619 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 22
37484537 AAAAAATTTA
37484547 AAAATTTATGTATTGTTTTGAG
1 AAAATTTATGTATTGTTTTGAG
* *
37484569 AGAATTTTATGAAATT-TTTT-A-
1 A-AAATTTATG-TATTGTTTTGAG
37484590 AAAATTTATGTATTGTTTTGAG
1 AAAATTTATGTATTGTTTTGAG
37484612 AAAATTTA
1 AAAATTTA
37484620 GGGTTTTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
19 3 0.07
20 12 0.29
21 2 0.05
22 10 0.24
23 12 0.29
24 3 0.07
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (22 bp):
AAAATTTATGTATTGTTTTGAG
Found at i:37484712 original size:21 final size:21
Alignment explanation
Indices: 37484686--37484732 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
37484676 TTTCTTAAGT
37484686 AAAAAATACCATAAAATTCTAA
1 AAAAAAT-CCATAAAATTCTAA
* *
37484708 AAAAAATTCATAATATTCTAA
1 AAAAAATCCATAAAATTCTAA
37484729 AAAA
1 AAAA
37484733 TTTAAAAGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 16 0.70
22 7 0.30
ACGTcount: A:0.64, C:0.11, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAAAATCCATAAAATTCTAA
Found at i:37485233 original size:13 final size:13
Alignment explanation
Indices: 37485215--37485244 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
37485205 GAAAGTTAAC
37485215 CCCATAAATCTAT
1 CCCATAAATCTAT
37485228 CCCATAAATCTAT
1 CCCATAAATCTAT
37485241 CCCA
1 CCCA
37485245 GTATAAGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.27
Consensus pattern (13 bp):
CCCATAAATCTAT
Found at i:37493511 original size:3 final size:3
Alignment explanation
Indices: 37493505--37493536 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
37493495 TTACAATACC
37493505 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
37493537 ATAAATTTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:37494883 original size:44 final size:43
Alignment explanation
Indices: 37494720--37495147 Score: 111
Period size: 44 Copynumber: 9.7 Consensus size: 43
37494710 TAAGACTTAC
* * *
37494720 AATCTTCAATCTATTCCACTGTTGCCCGGGGA-AGTAGAATTACTG
1 AATCTTCAATCTACTCCACTGTTGCCCAGGGAGA-TA-AAAT-CTG
* * ** * * *
37494765 --GCTTCAATGTACTCCACTGTAACCACAGAGAGGTAAAATCCG
1 AATCTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAAATCTG
* * * * **
37494807 CCATCTTCGATCTACTCTACTATTGCTTAGGGAGATAAAATCTG
1 -AATCTTCAATCTACTCCACTGTTGCCCAGGGAGATAAAATCTG
* *
37494851 AAATCTTCAATCTATTCCACTGTTGCCCAGGGA-AGTAGAATTACTG
1 -AATCTTCAATCTACTCCACTGTTGCCCAGGGAGA-TA-AAAT-CTG
* * * ** * *
37494897 --GCTTCAATGTACTCCACTATAACCACAGGGAGCTAAAATC-C
1 AATCTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAAATCTG
* * ** ** * * *
37494938 ACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGTTGAGATCTG
1 A--ATCTTCAATCTACTCCACTGTTGCCCAGGGAGATAAAATCTG
* * * * *
37494983 AAATCTTCAATCTATTCCATTTTTGTCCAGGGA-AGTAGAATTACTG
1 -AATCTTCAATCTACTCCACTGTTGCCCAGGGAGA-TA-AAAT-CTG
* * * ** * *
37495029 --GCTTCAATGTACTCCACTATAACCACAGGGAGGTAAAATCCG
1 AATCTTCAATCTACTCCACTGTTGCC-CAGGGAGATAAAATCTG
* * * ** ** *
37495071 CCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG
1 -AATCTTCAATCTACTCCACTGTTGCCCAGGGAGATAAAATCTG
* *
37495115 AAATCTTCAATCTATTCCACTGTTGTCCAGGGA
1 -AATCTTCAATCTACTCCACTGTTGCCCAGGGA
37495148 TGTAGAATTA
Statistics
Matches: 260, Mismatches: 99, Indels: 49
0.64 0.24 0.12
Matches are distributed among these distances:
42 5 0.02
43 63 0.24
44 132 0.51
45 53 0.20
46 7 0.03
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (43 bp):
AATCTTCAATCTACTCCACTGTTGCCCAGGGAGATAAAATCTG
Found at i:37494884 original size:132 final size:132
Alignment explanation
Indices: 37494720--37495263 Score: 917
Period size: 132 Copynumber: 4.1 Consensus size: 132
37494710 TAAGACTTAC
* *
37494720 AATCTTCAATCTATTCCACTGTTGCCCGGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
1 AATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
* * *
37494785 AACCACAGAGAGGTAAAATCCGCCATCTTCGATCTACTCTACTATTGCTTAGGGAGATAAAATCT
66 AACCACAGAGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAAATCT
37494850 GA
131 GA
37494852 AATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
* * * * * *
37494917 AACCACAGGGAGCTAAAATCCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGTTGAGATCT
66 AACCACAGAGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAAATCT
37494982 GA
131 GA
* * *
37494984 AATCTTCAATCTATTCCATTTTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
* *
37495049 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
66 AACCACAGAGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAAATCT
37495114 GA
131 GA
* *
37495116 AATCTTCAATCTATTCCACTGTTGTCCAGGGATGTAGAATTACTGGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
*
37495181 AACCACAGAGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTACTTAGGGAGATAAAATCT
66 AACCACAGAGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAAATCT
37495246 GA
131 GA
37495248 AATCTTCAATCTATTC
1 AATCTTCAATCTATTC
37495264 NNNNNNNNNN
Statistics
Matches: 388, Mismatches: 24, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
132 388 1.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (132 bp):
AATCTTCAATCTATTCCACTGTTGCCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
AACCACAGAGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAAATCT
GA
Found at i:37497928 original size:23 final size:22
Alignment explanation
Indices: 37497871--37497930 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 22
37497861 ATTGCAAAAC
* *
37497871 AGAAAAAGAAAGAAAAGCAATCG
1 AGAAAAGGAAA-AAAACCAATCG
*
37497894 A-AAAAGAAAAAAAAACCCAATCG
1 AGAAAAG-GAAAAAAA-CCAATCG
37497917 AGAAAAGGAAAAAA
1 AGAAAAGGAAAAAA
37497931 GAAAACCTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
22 8 0.27
23 17 0.57
24 5 0.17
ACGTcount: A:0.70, C:0.10, G:0.17, T:0.03
Consensus pattern (22 bp):
AGAAAAGGAAAAAAACCAATCG
Found at i:37498476 original size:17 final size:17
Alignment explanation
Indices: 37498456--37498517 Score: 70
Period size: 17 Copynumber: 3.5 Consensus size: 17
37498446 GTTTAGAATC
37498456 GGGTTTGTGTTAGATTT
1 GGGTTTGTGTTAGATTT
* * *
37498473 GGGTATTGGGTTTAGAATC
1 GGGT-TTGTG-TTAGATTT
37498492 GGGTTTGTGTTAGATTT
1 GGGTTTGTGTTAGATTT
37498509 GGGCTTTGT
1 GGG-TTTGT
37498518 AATACTAAAC
Statistics
Matches: 36, Mismatches: 6, Indels: 5
0.77 0.13 0.11
Matches are distributed among these distances:
17 13 0.36
18 13 0.36
19 10 0.28
ACGTcount: A:0.13, C:0.03, G:0.37, T:0.47
Consensus pattern (17 bp):
GGGTTTGTGTTAGATTT
Found at i:37498481 original size:36 final size:36
Alignment explanation
Indices: 37498439--37498511 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
37498429 GTTCGGTATT
37498439 GTATTGGGTTTAGAATCGGGTTTGTGTTAGATTTGG
1 GTATTGGGTTTAGAATCGGGTTTGTGTTAGATTTGG
37498475 GTATTGGGTTTAGAATCGGGTTTGTGTTAGATTTGG
1 GTATTGGGTTTAGAATCGGGTTTGTGTTAGATTTGG
37498511 G
1 G
37498512 CTTTGTAATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.16, C:0.03, G:0.37, T:0.44
Consensus pattern (36 bp):
GTATTGGGTTTAGAATCGGGTTTGTGTTAGATTTGG
Found at i:37499464 original size:31 final size:31
Alignment explanation
Indices: 37499429--37499501 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
37499419 TCGAACACAT
* *
37499429 GGCTGTGTGGACGAATTGTGTAACAGGTTGA
1 GGCTGTGTGGACAAACTGTGTAACAGGTTGA
*
37499460 GGCTGTGTGGACAAACTGTGTAACTGGTTGA
1 GGCTGTGTGGACAAACTGTGTAACAGGTTGA
*
37499491 GGCCGTGTGGA
1 GGCTGTGTGGA
37499502 GATGGAGTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.21, C:0.12, G:0.40, T:0.27
Consensus pattern (31 bp):
GGCTGTGTGGACAAACTGTGTAACAGGTTGA
Found at i:37502686 original size:30 final size:30
Alignment explanation
Indices: 37502625--37502686 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
37502615 TTTTCCCTCA
*
37502625 AAAACTTTTACTCCTTCCCACTTCCCCCCC
1 AAAACTTTTACTCCCTCCCACTTCCCCCCC
37502655 AAAACTTTTACTCCCCTCCC-C-TCCCCTCCC
1 AAAACTTTTACT-CCCTCCCACTTCCCC-CCC
37502685 AA
1 AA
37502687 CCCCCTAATC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 5 0.17
30 18 0.62
31 6 0.21
ACGTcount: A:0.21, C:0.52, G:0.00, T:0.27
Consensus pattern (30 bp):
AAAACTTTTACTCCCTCCCACTTCCCCCCC
Found at i:37502819 original size:30 final size:31
Alignment explanation
Indices: 37502784--37502843 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
37502774 TAACCTTTTA
*
37502784 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
* *
37502814 TTTTCCCCTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
37502844 TCCCACCTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:37508431 original size:15 final size:14
Alignment explanation
Indices: 37508411--37508441 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
37508401 AAGTACAATC
37508411 ATCCAAAAACTGAAA
1 ATCCAAAAACT-AAA
37508426 ATCCAAAAACTAAA
1 ATCCAAAAACTAAA
37508440 AT
1 AT
37508442 AATAGTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.31
15 11 0.69
ACGTcount: A:0.61, C:0.19, G:0.03, T:0.16
Consensus pattern (14 bp):
ATCCAAAAACTAAA
Found at i:37508576 original size:33 final size:33
Alignment explanation
Indices: 37508510--37508576 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
37508500 TTACAATGTC
* * *
37508510 ACAAATATGCTACAAATTTGACAAAAGCAACTA
1 ACAAATATACTACAAATGTGACAAAAACAACTA
*
37508543 ACAAATATACTACAAATGTGACAAAAACTACTA
1 ACAAATATACTACAAATGTGACAAAAACAACTA
37508576 A
1 A
37508577 GCGTCACATT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.54, C:0.18, G:0.07, T:0.21
Consensus pattern (33 bp):
ACAAATATACTACAAATGTGACAAAAACAACTA
Found at i:37511651 original size:29 final size:27
Alignment explanation
Indices: 37511585--37511665 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
37511575 AATTATAAAA
* * * *
37511585 TATAAAAATGTATATATATAAATAAAT
1 TATAAAAATGTATGTATGTATATATAT
37511612 TAT-AAAA-GTATGTACGTGTATATATAT
1 TATAAAAATGTATGTA--TGTATATATAT
37511639 TATAAAAATGTATGTATGTATATATAT
1 TATAAAAATGTATGTATGTATATATAT
37511666 AACGAAATTT
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
25 6 0.13
26 4 0.09
27 25 0.54
28 4 0.09
29 7 0.15
ACGTcount: A:0.48, C:0.01, G:0.10, T:0.41
Consensus pattern (27 bp):
TATAAAAATGTATGTATGTATATATAT
Found at i:37511666 original size:29 final size:29
Alignment explanation
Indices: 37511585--37511666 Score: 91
Period size: 29 Copynumber: 3.0 Consensus size: 29
37511575 AATTATAAAA
* * *
37511585 TATAAAAATGTA--TATATATAAATAAAT
1 TATAAAAATGTATGTATGTATATATATAT
* *
37511612 TAT-AAAA-GTATGTACGTGTATATATAT
1 TATAAAAATGTATGTATGTATATATATAT
37511639 TATAAAAATGTATGTATGTATATATATA
1 TATAAAAATGTATGTATGTATATATATA
37511667 ACGAAATTTG
Statistics
Matches: 44, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
25 3 0.07
26 4 0.09
27 16 0.36
28 4 0.09
29 17 0.39
ACGTcount: A:0.49, C:0.01, G:0.10, T:0.40
Consensus pattern (29 bp):
TATAAAAATGTATGTATGTATATATATAT
Found at i:37513551 original size:50 final size:50
Alignment explanation
Indices: 37513491--37513672 Score: 240
Period size: 50 Copynumber: 3.6 Consensus size: 50
37513481 TCGATACACG
* *
37513491 TAGTAGCCTTCACATAGTACCACACACGTGATTAAGTTTTACGGTTCACA
1 TAGTAGCCTTCACATAGTACTACACACGTGATAAAGTTTTACGGTTCACA
* *
37513541 TAGTAGCCTTCACATAGTACTACACACGTGATCAAGTTTTACGGTTCACG
1 TAGTAGCCTTCACATAGTACTACACACGTGATAAAGTTTTACGGTTCACA
* * * *
37513591 CAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTT-CGATACACA
1 TAGTAGCCTTCACATAGTACTACACACGTGA-TAAAG-TTTTACGGTTCACA
* * *
37513642 TTGTAGCCTTCACTTAGTACTACACATGTGA
1 TAGTAGCCTTCACATAGTACTACACACGTGA
37513673 CCATCATTTA
Statistics
Matches: 117, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
50 77 0.66
51 36 0.31
52 4 0.03
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (50 bp):
TAGTAGCCTTCACATAGTACTACACACGTGATAAAGTTTTACGGTTCACA
Found at i:37513653 original size:101 final size:100
Alignment explanation
Indices: 37513487--37513672 Score: 266
Period size: 101 Copynumber: 1.9 Consensus size: 100
37513477 TCATTCGATA
* ** * *
37513487 CACGTAGTAGCCTTCACATAGTACCACACACGTGATTAAGTTTTACGGTTCACATAGTAGCCTTC
1 CACGCAGTAGCCTTCACATAGTACCACACACGTGACAAAGTTTTACGATACACATAGTAGCCTTC
37513552 ACATAGTACTACACACGTGATCAAGTTTTACGGTT
66 ACATAGTACTACACACGTGATCAAGTTTTACGGTT
* *
37513587 CACGCAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTTTT-CGATACACATTGTAGCCT
1 CACGCAGTAGCCTTCACATAGTACCACACACGTGA-CAAAG-TTTTACGATACACATAGTAGCCT
* *
37513651 TCACTTAGTACTACACATGTGA
64 TCACATAGTACTACACACGTGA
37513673 CCATCATTTA
Statistics
Matches: 75, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
100 33 0.44
101 38 0.51
102 4 0.05
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (100 bp):
CACGCAGTAGCCTTCACATAGTACCACACACGTGACAAAGTTTTACGATACACATAGTAGCCTTC
ACATAGTACTACACACGTGATCAAGTTTTACGGTT
Found at i:37519482 original size:22 final size:24
Alignment explanation
Indices: 37519452--37519495 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
37519442 CGGGACAAAA
37519452 ATTTGAATTAATG-AAATGGTGGC
1 ATTTGAATTAATGAAAATGGTGGC
37519475 ATTT-AATTAATGAAAATGGTG
1 ATTTGAATTAATGAAAATGGTG
37519496 CATAGAAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.39, C:0.02, G:0.23, T:0.36
Consensus pattern (24 bp):
ATTTGAATTAATGAAAATGGTGGC
Found at i:37538508 original size:20 final size:20
Alignment explanation
Indices: 37538480--37538549 Score: 79
Period size: 20 Copynumber: 3.5 Consensus size: 20
37538470 TATTGATCTT
* *
37538480 GTATTGATACTTTTTTTAAG
1 GTATCGATACTTTTCTTAAG
37538500 GTATCGATACTTTTCTTAAG
1 GTATCGATACTTTTCTTAAG
* *
37538520 ATATCGATA-TATTTCCTAAAG
1 GTATCGATACT-TTT-CTTAAG
37538541 GTATCGATA
1 GTATCGATA
37538550 TTCCTGCTCC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
19 1 0.02
20 29 0.67
21 13 0.30
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.44
Consensus pattern (20 bp):
GTATCGATACTTTTCTTAAG
Found at i:37540567 original size:28 final size:29
Alignment explanation
Indices: 37540522--37540582 Score: 81
Period size: 28 Copynumber: 2.1 Consensus size: 29
37540512 ATTTATTTGT
*
37540522 TTAAGGTTTAGGGATTTTAAAA-AATAAA
1 TTAAGGTTTAGGAATTTTAAAATAATAAA
*
37540550 TTAAGGTTTA-GAATTTTTAAAATAATTAA
1 TTAAGGTTTAGGAA-TTTTAAAATAATAAA
37540579 TTAA
1 TTAA
37540583 ATTAGGTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
27 2 0.07
28 18 0.62
29 9 0.31
ACGTcount: A:0.46, C:0.00, G:0.13, T:0.41
Consensus pattern (29 bp):
TTAAGGTTTAGGAATTTTAAAATAATAAA
Found at i:37540601 original size:33 final size:32
Alignment explanation
Indices: 37540546--37540664 Score: 123
Period size: 33 Copynumber: 3.6 Consensus size: 32
37540536 TTTTAAAAAA
**
37540546 TAAATTAAGGTTTAGAATTTTTAAAATAATTAAT
1 TAAATT-AGGTTTAG-GGTTTTAAAATAATTAAT
*
37540580 TAAATTAGGTTTTAGGGTTTT-AAGTAAATTAAT
1 TAAATTAGG-TTTAGGGTTTTAAAAT-AATTAAT
* * *
37540613 TAAATTAAAGTTTAGAGTTTTAAAAAAATTAAT
1 TAAATT-AGGTTTAGGGTTTTAAAATAATTAAT
37540646 TAAATTAGGGTTTAGGGTT
1 TAAATTA-GGTTTAGGGTT
37540665 GAGTGTTGAA
Statistics
Matches: 71, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
32 4 0.06
33 52 0.73
34 15 0.21
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.43
Consensus pattern (32 bp):
TAAATTAGGTTTAGGGTTTTAAAATAATTAAT
Found at i:37540681 original size:67 final size:66
Alignment explanation
Indices: 37540539--37540664 Score: 175
Period size: 66 Copynumber: 1.9 Consensus size: 66
37540529 TTAGGGATTT
* * * * *
37540539 TAAAAAA-TAAATTAAGGTTTAGAATTTTTAAAATAATTAATTAAATTAGGTTTTAGGGTTTTAA
1 TAAAAAATTAAATTAAAGTTTAGAAGTTTTAAAAAAATTAATTAAATTAGGGTTTAGGGTTTGAA
37540603 G
66 G
*
37540604 TAAATTAATTAAATTAAAGTTTAG-AGTTTTAAAAAAATTAATTAAATTAGGGTTTAGGGTT
1 TAAA-AAATTAAATTAAAGTTTAGAAGTTTTAAAAAAATTAATTAAATTAGGGTTTAGGGTT
37540665 GAGTGTTGAA
Statistics
Matches: 54, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
65 4 0.07
66 36 0.67
67 14 0.26
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.41
Consensus pattern (66 bp):
TAAAAAATTAAATTAAAGTTTAGAAGTTTTAAAAAAATTAATTAAATTAGGGTTTAGGGTTTGAA
G
Found at i:37540992 original size:127 final size:125
Alignment explanation
Indices: 37540707--37541214 Score: 518
Period size: 127 Copynumber: 4.1 Consensus size: 125
37540697 TTTTGTTTCT
* * * **
37540707 TTTTTCTAGAGTAGTTTCAGAAAATTTAATTTTGAGAAGACGGTTCTG-AAAAATAGTG-ACAAA
1 TTTTTCTATAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTA-AAA
* * *
37540770 AACGCTTCAAGCAAG-ATGCACTGTCAACAAAAGTACTGAAAAAAGCTCCTACGTGGACGCTC
65 AACGCTTCAAGC-AGTATGCACTGTCAACAAAATTACTAAAAAAAACTCC-ACGTGGACGCTC
* * * * * *
37540832 TTTTACTACAGTAGTTTCTAAAAAAATAATTTTGAGAAGACGGTTTTGAAAAAATAATGTAAAAA
1 TTTTTCTATAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTAAAAA
* * * * * *
37540897 ATGCTTCAAGCAGTATGCACTCTCAGCAGAATTACTAAAAAAAAACTCTCATGTGGATGCTC
66 ACGCTTCAAGCAGTATGCACTGTCAACAAAATTACT-AAAAAAAACTC-CACGTGGACGCTC
* *
37540959 TTTTTCTATAGTAGTTCCTGAAAAAATAATTTTGAAAAGACGGTTCTGAAAAAATAGTGTCAAAA
1 TTTTTCTATAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTAAAAA
* * * * * *
37541024 ACGCTTCAAGCAGGATGCACTGTCAGCAAAGTTACTGAAAAAATCTCCCACATGGACGCTC
66 ACGCTTCAAGCAGTATGCACTGTCAACAAAATTACTAAAAAAAACT-CCACGTGGACGCTC
* * * *
37541085 ---TT-T-T--T--TTCCTGGAAAAATAATTTTAAGAAGACGGTTTTGAAAAAATAGTGCAAAAA
1 TTTTTCTATAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTAAAAA
* * * * * *
37541141 ATGCTTCAAGCAGTATGCACTATCAACAAAATTACTGAAAAAAGCTCCCACATGGACTCTC
66 ACGCTTCAAGCAGTATGCACTGTCAACAAAATTACTAAAAAAAACT-CCACGTGGACGCTC
*
37541202 TTTTTCTACAGTA
1 TTTTTCTATAGTA
37541215 TTTCTTGCTT
Statistics
Matches: 320, Mismatches: 49, Indels: 28
0.81 0.12 0.07
Matches are distributed among these distances:
117 99 0.31
119 1 0.00
120 2 0.01
121 2 0.01
122 1 0.00
123 2 0.01
124 1 0.00
125 43 0.13
126 59 0.18
127 109 0.34
128 1 0.00
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.29
Consensus pattern (125 bp):
TTTTTCTATAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTAAAAA
ACGCTTCAAGCAGTATGCACTGTCAACAAAATTACTAAAAAAAACTCCACGTGGACGCTC
Found at i:37541101 original size:117 final size:117
Alignment explanation
Indices: 37540973--37541206 Score: 355
Period size: 117 Copynumber: 2.0 Consensus size: 117
37540963 TCTATAGTAG
37540973 TTCCTGAAAAAATAATTTTGAA-AAGACGGTTCTGAAAAAATAGTGTC-AAAAACGCTTCAAGCA
1 TTCCTGAAAAAATAATTTT-AAGAAGACGGTTCTGAAAAAATAGTG-CAAAAAACGCTTCAAGCA
* * * *
37541036 GGATGCACTGTCAGCAAAGTTACTGAAAAAATCTCCCACATGGACGCTCTTTTT
64 GGATGCACTATCAACAAAATTACTGAAAAAAGCTCCCACATGGACGCTCTTTTT
* * * *
37541090 TTCCTGGAAAAATAATTTTAAGAAGACGGTTTTGAAAAAATAGTGCAAAAAATGCTTCAAGCAGT
1 TTCCTGAAAAAATAATTTTAAGAAGACGGTTCTGAAAAAATAGTGCAAAAAACGCTTCAAGCAGG
*
37541155 ATGCACTATCAACAAAATTACTGAAAAAAGCTCCCACATGGACTCTCTTTTT
66 ATGCACTATCAACAAAATTACTGAAAAAAGCTCCCACATGGACGCTCTTTTT
37541207 CTACAGTATT
Statistics
Matches: 106, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
116 3 0.03
117 103 0.97
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (117 bp):
TTCCTGAAAAAATAATTTTAAGAAGACGGTTCTGAAAAAATAGTGCAAAAAACGCTTCAAGCAGG
ATGCACTATCAACAAAATTACTGAAAAAAGCTCCCACATGGACGCTCTTTTT
Found at i:37544841 original size:25 final size:24
Alignment explanation
Indices: 37544804--37544855 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 24
37544794 ACTGTTATAA
* *
37544804 AAAATTATAAAAT-AAAAATTAATT
1 AAAATTACAAAATGAAAAA-AAATT
37544828 AAAATTACATAAATGAAAAAAAATT
1 AAAATTACA-AAATGAAAAAAAATT
37544853 AAA
1 AAA
37544856 TAATATTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 8 0.33
25 11 0.46
26 5 0.21
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (24 bp):
AAAATTACAAAATGAAAAAAAATT
Found at i:37561293 original size:20 final size:20
Alignment explanation
Indices: 37561268--37561306 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
37561258 TTTTAAATTT
*
37561268 AAATTA-GTTTTTGGAAAAAA
1 AAATTATGTTATT-GAAAAAA
37561288 AAATTATGTTATTGAAAAA
1 AAATTATGTTATTGAAAAA
37561307 TATTTATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (20 bp):
AAATTATGTTATTGAAAAAA
Found at i:37569468 original size:31 final size:32
Alignment explanation
Indices: 37569423--37569485 Score: 119
Period size: 31 Copynumber: 2.0 Consensus size: 32
37569413 AGATAATTTT
37569423 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
37569455 AAAGAG-TTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTTATTAGGATTCAATTACTCTTG
37569486 TAATTTGCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 25 0.81
32 6 0.19
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.43
Consensus pattern (32 bp):
AAAGAGTTTTTATTAGGATTCAATTACTCTTG
Found at i:37570068 original size:155 final size:156
Alignment explanation
Indices: 37569849--37570161 Score: 610
Period size: 155 Copynumber: 2.0 Consensus size: 156
37569839 TTTTATTTCT
37569849 AATTTGTGTTTCTCTTGTGTCTAGATCCGGGTTTCCGCATCAATACTACTTTTGTTAGATCACAT
1 AATTTGTGTTTCTCTTGTGTCTAGATCCGGGTTTCCGCATCAATACTACTTTTGTTAGATCACAT
*
37569914 TTTAATTAATAATATATTGATAAATTGTTTTTCTAATGATAATTTAAAAATATAATGAAAAATAA
66 TATAATTAATAATATATTGATAAATTGTTTTTCTAATGATAATTTAAAAATATAATGAAAAATAA
37569979 AATGTATTATCATCCG-TAAAATATA
131 AATGTATTATCATCCGTTAAAATATA
37570004 AATTTGTGTTTCTCTTGTGTCTAGATCCGGGTTTCCGCATCAATACTACTTTTGTTAGATCACAT
1 AATTTGTGTTTCTCTTGTGTCTAGATCCGGGTTTCCGCATCAATACTACTTTTGTTAGATCACAT
37570069 TATAATTAATAATATATTGATAAATTGTTTTTCTAATGATAATTTAAAAATATAATGAAAAATAA
66 TATAATTAATAATATATTGATAAATTGTTTTTCTAATGATAATTTAAAAATATAATGAAAAATAA
37570134 AATGTATTATCATCCGTTAAAATATA
131 AATGTATTATCATCCGTTAAAATATA
37570160 AA
1 AA
37570162 AACTAAATTA
Statistics
Matches: 156, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
155 145 0.93
156 11 0.07
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (156 bp):
AATTTGTGTTTCTCTTGTGTCTAGATCCGGGTTTCCGCATCAATACTACTTTTGTTAGATCACAT
TATAATTAATAATATATTGATAAATTGTTTTTCTAATGATAATTTAAAAATATAATGAAAAATAA
AATGTATTATCATCCGTTAAAATATA
Found at i:37575464 original size:205 final size:207
Alignment explanation
Indices: 37575112--37575524 Score: 812
Period size: 205 Copynumber: 2.0 Consensus size: 207
37575102 TATCCCTATA
37575112 TCTAACTAAACAATGATATAAAAATAAAAAAAATTTAAATATGCAATTATTCTTTTCATTATTTG
1 TCTAACTAAACAATGATATAAAAATAAAAAAAATTTAAATATGCAATTATTCTTTTCATTATTTG
37575177 ATCAACTCAATTATTTGAATCAATGTACTTGGATGATTTATGGAGTACAAGTTTAAAAATTGCGT
66 ATCAACTCAATTATTTGAATCAATGTACTTGGATGATTTATGGAGTACAAGTTTAAAAATTGCGT
37575242 TAACATGAAACCAAACTGAATTCCATTTTTTGTTTCATAAATGATTAATTATAATTATAATTAT-
131 TAACATGAAACCAAACTGAATTCCATTTTTTGTTTCATAAATGATTAATTATAATTATAATTATA
37575306 A-TATATAAAAT
196 ATTATATAAAAT
37575317 TCTAACTAAACAATGATATAAAAATAAAAAAAATTTAAATATGCAATTATTCTTTTCATTATTTG
1 TCTAACTAAACAATGATATAAAAATAAAAAAAATTTAAATATGCAATTATTCTTTTCATTATTTG
37575382 ATCAACTCAATTATTTGAATCAATGTACTTGGATGATTTATGGAGTACAAGTTTAAAAATTGCGT
66 ATCAACTCAATTATTTGAATCAATGTACTTGGATGATTTATGGAGTACAAGTTTAAAAATTGCGT
37575447 TAACATGAAACCAAACTGAATTCCATTTTTTGTTTCATAAATGATTAATTATAATTATAATTATA
131 TAACATGAAACCAAACTGAATTCCATTTTTTGTTTCATAAATGATTAATTATAATTATAATTATA
37575512 ATTATATAAAAT
196 ATTATATAAAAT
37575524 T
1 T
37575525 AAATATTTTA
Statistics
Matches: 206, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
205 194 0.94
206 1 0.00
207 11 0.05
ACGTcount: A:0.42, C:0.10, G:0.09, T:0.39
Consensus pattern (207 bp):
TCTAACTAAACAATGATATAAAAATAAAAAAAATTTAAATATGCAATTATTCTTTTCATTATTTG
ATCAACTCAATTATTTGAATCAATGTACTTGGATGATTTATGGAGTACAAGTTTAAAAATTGCGT
TAACATGAAACCAAACTGAATTCCATTTTTTGTTTCATAAATGATTAATTATAATTATAATTATA
ATTATATAAAAT
Found at i:37575503 original size:6 final size:6
Alignment explanation
Indices: 37575492--37575517 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
37575482 CATAAATGAT
37575492 TAATTA TAATTA TAATTA TAATTA TA
1 TAATTA TAATTA TAATTA TAATTA TA
37575518 TAAAATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (6 bp):
TAATTA
Found at i:37576305 original size:7 final size:7
Alignment explanation
Indices: 37576293--37576318 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
37576283 TAGAAACTAG
37576293 GGTTTAT
1 GGTTTAT
37576300 GGTTTAT
1 GGTTTAT
37576307 GGTTTAT
1 GGTTTAT
37576314 GGTTT
1 GGTTT
37576319 TGAGAGTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.31, T:0.58
Consensus pattern (7 bp):
GGTTTAT
Done.