Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 113 of 145
Found at i:37935530 original size:22 final size:22
Alignment explanation
Indices: 37935502--37935545 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
37935492 TATATTGTAA
37935502 TTTTTATCTAATTAAAAATAAT
1 TTTTTATCTAATTAAAAATAAT
37935524 TTTTTATCTAATTAAAAATAAT
1 TTTTTATCTAATTAAAAATAAT
37935546 AACGTTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (22 bp):
TTTTTATCTAATTAAAAATAAT
Found at i:37935560 original size:26 final size:22
Alignment explanation
Indices: 37935499--37935568 Score: 79
Period size: 22 Copynumber: 3.0 Consensus size: 22
37935489 ATCTATATTG
37935499 TAATTT-TTATCTAATTAAAAA
1 TAATTTATTATCTAATTAAAAA
*
37935520 TAATTTTTTATCTAATTAAAAA
1 TAATTTATTATCTAATTAAAAA
*
37935542 TAATAACGTTATTATCTAATTACAAA
1 TAAT----TTATTATCTAATTAAAAA
37935568 T
1 T
37935569 TCATTTTCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
21 6 0.14
22 19 0.45
26 17 0.40
ACGTcount: A:0.46, C:0.07, G:0.01, T:0.46
Consensus pattern (22 bp):
TAATTTATTATCTAATTAAAAA
Found at i:37937727 original size:23 final size:22
Alignment explanation
Indices: 37937684--37937727 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
37937674 TTCTAAGTCG
37937684 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
37937707 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
37937728 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:37943117 original size:14 final size:14
Alignment explanation
Indices: 37943094--37943146 Score: 63
Period size: 14 Copynumber: 3.8 Consensus size: 14
37943084 TTCAATGTTT
*
37943094 ATATTGCAACGATC
1 ATATTCCAACGATC
37943108 ATATTCCAACGATC
1 ATATTCCAACGATC
**
37943122 ATATTGTAAC-AGTC
1 ATATTCCAACGA-TC
37943136 ATATTCCAACG
1 ATATTCCAACG
37943147 GCCATATTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
13 1 0.03
14 31 0.97
ACGTcount: A:0.36, C:0.23, G:0.11, T:0.30
Consensus pattern (14 bp):
ATATTCCAACGATC
Found at i:37943152 original size:14 final size:14
Alignment explanation
Indices: 37943094--37943154 Score: 59
Period size: 14 Copynumber: 4.4 Consensus size: 14
37943084 TTCAATGTTT
* *
37943094 ATATTGCAACGATC
1 ATATTCCAACGGTC
*
37943108 ATATTCCAACGATC
1 ATATTCCAACGGTC
** *
37943122 ATATTGTAACAGTC
1 ATATTCCAACGGTC
*
37943136 ATATTCCAACGGCC
1 ATATTCCAACGGTC
37943150 ATATT
1 ATATT
37943155 TTTGCATTAC
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
14 38 1.00
ACGTcount: A:0.34, C:0.23, G:0.11, T:0.31
Consensus pattern (14 bp):
ATATTCCAACGGTC
Found at i:37952824 original size:29 final size:26
Alignment explanation
Indices: 37952771--37952831 Score: 104
Period size: 26 Copynumber: 2.3 Consensus size: 26
37952761 ACGTCCCTCT
37952771 CCTCCCAAAGTTCATCATTAATCTCC
1 CCTCCCAAAGTTCATCATTAATCTCC
*
37952797 CCTCCCAAAGTTCATCATTAATCTTC
1 CCTCCCAAAGTTCATCATTAATCTCC
*
37952823 TCTCCCAAA
1 CCTCCCAAA
37952832 CTAAGGTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.28, C:0.38, G:0.03, T:0.31
Consensus pattern (26 bp):
CCTCCCAAAGTTCATCATTAATCTCC
Found at i:37954511 original size:44 final size:44
Alignment explanation
Indices: 37954444--37954558 Score: 139
Period size: 44 Copynumber: 2.6 Consensus size: 44
37954434 TGTCATTAGG
*
37954444 ATTTATATTCA-AAAGGTATTATGT-CCAGGTGTT-GGCTACT-TGCC
1 ATTTATATTCAGCAA-GTATTATGTACCA-GTGTTAGG-TA-TGTGCC
* *
37954488 ATTTATATTCAGCAAGTACTATGTACCAGTGTTAGGTATGTTCC
1 ATTTATATTCAGCAAGTATTATGTACCAGTGTTAGGTATGTGCC
37954532 ATTTATATTCAGCAAGTATTATGTACC
1 ATTTATATTCAGCAAGTATTATGTACC
37954559 GATGTTGCAG
Statistics
Matches: 63, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
43 1 0.02
44 55 0.87
45 7 0.11
ACGTcount: A:0.28, C:0.16, G:0.17, T:0.39
Consensus pattern (44 bp):
ATTTATATTCAGCAAGTATTATGTACCAGTGTTAGGTATGTGCC
Found at i:37956465 original size:18 final size:17
Alignment explanation
Indices: 37956444--37956478 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
37956434 AGTCCCACGT
37956444 GCCCATGTGGGCCCACAC
1 GCCCATGT-GGCCCACAC
*
37956462 GCCCGTGTGGCCCACAC
1 GCCCATGTGGCCCACAC
37956479 AGCCTGGCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.14, C:0.46, G:0.29, T:0.11
Consensus pattern (17 bp):
GCCCATGTGGCCCACAC
Found at i:37956544 original size:17 final size:18
Alignment explanation
Indices: 37956512--37956549 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 18
37956502 CCGTGTGGCT
*
37956512 TGCTCATGTGGGCCCACA
1 TGCTCATATGGGCCCACA
37956530 TGCTCATAT-GGCCCACA
1 TGCTCATATGGGCCCACA
37956547 TGC
1 TGC
37956550 CCAATCTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.18, C:0.34, G:0.24, T:0.24
Consensus pattern (18 bp):
TGCTCATATGGGCCCACA
Found at i:37966532 original size:21 final size:21
Alignment explanation
Indices: 37966500--37966549 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
37966490 TGACATTTTT
37966500 AATTAA-ATAAAAATATTTAA
1 AATTAACATAAAAATATTTAA
37966520 AATTAACATAAAAATATTTAA
1 AATTAACATAAAAATATTTAA
37966541 AATTAACAT
1 AATTAACAT
37966550 TAAGTAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
20 6 0.21
21 23 0.79
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (21 bp):
AATTAACATAAAAATATTTAA
Found at i:37977464 original size:9 final size:9
Alignment explanation
Indices: 37977450--37977474 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
37977440 TATTTCTTAA
37977450 TTTTTAATT
1 TTTTTAATT
37977459 TTTTTAATT
1 TTTTTAATT
37977468 TTTTTAA
1 TTTTTAA
37977475 AAAAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTTAATT
Found at i:37977578 original size:9 final size:9
Alignment explanation
Indices: 37977566--37977590 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
37977556 TATTTTCTAA
37977566 TTTTTAATT
1 TTTTTAATT
37977575 TTTTTAATT
1 TTTTTAATT
37977584 TTTTTAA
1 TTTTTAA
37977591 AAAAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (9 bp):
TTTTTAATT
Found at i:37977626 original size:116 final size:117
Alignment explanation
Indices: 37977422--37977653 Score: 441
Period size: 116 Copynumber: 2.0 Consensus size: 117
37977412 AAAATAAGAA
37977422 AATAAAAAATAAATTTCTTATTTCTTAATTTTTAATTTTTTTAATTTTTTTAAAAAAAATAATAA
1 AATAAAAAATAAATTTCTTATTTCTTAATTTTTAATTTTTTTAATTTTTTTAAAAAAAATAATAA
37977487 TTTTTTATTATTTTTATGACTTGTCAACATTCTATTAGTT-TCATTCCAATT
66 TTTTTTATTATTTTTATGACTTGTCAACATTCTATTAGTTGTCATTCCAATT
37977538 AATAAAAAATAAATTTCTTATTT-TCTAATTTTTAATTTTTTTAATTTTTTTAAAAAAAATAATA
1 AATAAAAAATAAATTTCTTATTTCT-TAATTTTTAATTTTTTTAATTTTTTTAAAAAAAATAATA
37977602 ATTTTTTATTATTTTTATGACTTGTCAACATTCTATTAGTTGTCATTCCAAT
65 ATTTTTTATTATTTTTATGACTTGTCAACATTCTATTAGTTGTCATTCCAAT
37977654 ATTTAACGAT
Statistics
Matches: 114, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
115 1 0.01
116 103 0.90
117 10 0.09
ACGTcount: A:0.36, C:0.08, G:0.03, T:0.53
Consensus pattern (117 bp):
AATAAAAAATAAATTTCTTATTTCTTAATTTTTAATTTTTTTAATTTTTTTAAAAAAAATAATAA
TTTTTTATTATTTTTATGACTTGTCAACATTCTATTAGTTGTCATTCCAATT
Found at i:37982813 original size:41 final size:41
Alignment explanation
Indices: 37982721--37982859 Score: 145
Period size: 41 Copynumber: 3.4 Consensus size: 41
37982711 GCTAATCGAA
* * *
37982721 AAACACTGCAAAAGGTTAGAGCTATAGCGGCGTTTCTTCAT
1 AAACACCGCAAAAGGTTAGATCTATAGCGGCGTTTTTTCAT
** *
37982762 AAACGTCGCAAAAGGTTAGATCTATAGCGGCATTTTTTCAT
1 AAACACCGCAAAAGGTTAGATCTATAGCGGCGTTTTTTCAT
* * * * *
37982803 AAATACCGCAAAATGTTTGAGT-TGTAGCGGCGTTTTTATTAT
1 AAACACCGCAAAAGGTTAGA-TCTATAGCGGCGTTTTT-TCAT
*
37982845 AAACACTGCAAAAGG
1 AAACACCGCAAAAGG
37982860 AAGCAATAGC
Statistics
Matches: 79, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
41 63 0.80
42 16 0.20
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29
Consensus pattern (41 bp):
AAACACCGCAAAAGGTTAGATCTATAGCGGCGTTTTTTCAT
Found at i:37984037 original size:5 final size:5
Alignment explanation
Indices: 37984022--37984059 Score: 60
Period size: 5 Copynumber: 7.6 Consensus size: 5
37984012 TATCTACTTA
37984022 TTTATT TTTAT TTTAT TTTAT TTTA- TTTAT TTTAT TTT
1 TTTA-T TTTAT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
37984060 TGTTTGTTTC
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
4 4 0.13
5 23 0.74
6 4 0.13
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:37984052 original size:9 final size:9
Alignment explanation
Indices: 37984028--37984058 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
37984018 CTTATTTATT
37984028 TTTATTTTA
1 TTTATTTTA
37984037 TTTTATTTTA
1 -TTTATTTTA
37984047 TTTATTTTA
1 TTTATTTTA
37984056 TTT
1 TTT
37984059 TTGTTTGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (9 bp):
TTTATTTTA
Found at i:37984052 original size:14 final size:15
Alignment explanation
Indices: 37984022--37984059 Score: 60
Period size: 14 Copynumber: 2.5 Consensus size: 15
37984012 TATCTACTTA
37984022 TTTATTTTTATTTTAT
1 TTTA-TTTTATTTTAT
37984038 TTTATTTTA-TTTAT
1 TTTATTTTATTTTAT
37984052 TTTATTTT
1 TTTATTTT
37984060 TGTTTGTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 13 0.59
15 5 0.23
16 4 0.18
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTATTTTATTTTAT
Found at i:37985039 original size:3 final size:3
Alignment explanation
Indices: 37985031--37985116 Score: 68
Period size: 3 Copynumber: 29.0 Consensus size: 3
37985021 ATATTCGCTG
* * * * *
37985031 TTA TTA TTA TCA TTC TTA TCT- TCA TTA TTA CTA TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
37985076 ATA TTA TTA TTA TTA TTA CTA TTG TTA TTA -TA TTT TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
37985117 CAATTTATCT
Statistics
Matches: 62, Mismatches: 18, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
2 2 0.03
3 59 0.95
4 1 0.02
ACGTcount: A:0.30, C:0.08, G:0.01, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:37986949 original size:21 final size:22
Alignment explanation
Indices: 37986925--37986970 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
37986915 TAAATATATA
*
37986925 TATACATG-TATATTTATTTTT
1 TATACATGACATATTTATTTTT
37986946 TATACATGCACATATTTATTTTT
1 TATACATG-ACATATTTATTTTT
37986969 TA
1 TA
37986971 ACTAATATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 8 0.36
23 14 0.64
ACGTcount: A:0.30, C:0.09, G:0.04, T:0.57
Consensus pattern (22 bp):
TATACATGACATATTTATTTTT
Found at i:37987446 original size:19 final size:20
Alignment explanation
Indices: 37987405--37987446 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
37987395 ATTTCTATGC
* *
37987405 CATTGTAATATTTATTATTG
1 CATTGTAATATTTAATATAG
*
37987425 CATTGT-ATATTTAATGTAG
1 CATTGTAATATTTAATATAG
37987444 CAT
1 CAT
37987447 CACATCATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.50
Consensus pattern (20 bp):
CATTGTAATATTTAATATAG
Found at i:37994733 original size:26 final size:26
Alignment explanation
Indices: 37994694--37994748 Score: 101
Period size: 26 Copynumber: 2.1 Consensus size: 26
37994684 TGTTTAGAGG
37994694 GATCGCACGACTTTGAAGGTGATGAA
1 GATCGCACGACTTTGAAGGTGATGAA
*
37994720 GATCGCACGGCTTTGAAGGTGATGAA
1 GATCGCACGACTTTGAAGGTGATGAA
37994746 GAT
1 GAT
37994749 TATGGTTTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.15, G:0.33, T:0.24
Consensus pattern (26 bp):
GATCGCACGACTTTGAAGGTGATGAA
Found at i:37999462 original size:44 final size:42
Alignment explanation
Indices: 37999325--38000358 Score: 454
Period size: 44 Copynumber: 23.8 Consensus size: 42
37999315 CCAATGATCC
* * *
37999325 TATCTCTCTGAAGTTGCAGTGGAGCGGATTAA-AACCACAGATCT
1 TATCTC-CTGAAGTTGCAGTGGAGCAGACTAAGAAGCA-AG-TCT
* * * * *
37999369 TATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTAGTCT
1 TATCTC-CTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
*
37999409 TACCTTCCTGAAGTTGCAGTGGAGCAGACTAAGCAAGCAAGTCT
1 TATC-TCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * * * *
37999453 TATCCTCCTGAAGTTACAGT-GAGGTAAACTGAAGATGGCAAATCT
1 TAT-CTCCTGAAGTTGCAGTGGA-GCAGACT-AAGA-AGCAAGTCT
* * *
37999498 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TCAG-AGCCGATAATCC
1 TATCT-CCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCT
* * * * **
37999542 TATCTCCCTGAAGTTACAGTGGAGCGGATTAA-AACCTTGGATCT
1 TATCT-CCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * * * *
37999586 TATCTCTCTGAAGTTGCAG-AGAGAAGA-T-CGCATCTAGTCT
1 TATCTC-CTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
37999626 TATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
1 TATCTCC-TGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * **
37999670 TATCCTCCTGAAGTTACAGTGGAGCAGACTGAAGATGGCAAACCT
1 TAT-CTCCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCT
* * * *
37999715 TATCTCCCTGAAGTTGCA-TGGAGCAG-GTTA-AAGTCGATAATCC
1 TATCT-CCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCT
* ** **
37999758 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAA-ATCCTTGGATCT
1 TATCT-CCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * * * *
37999802 TATCTCTCTGAAGTTGCAG-AGAGTAGA-T-CGCATCTAGTCT
1 TATCTC-CTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
*
37999842 TATCTCTCTGAAGTTGCAGCGGAGCAGACTAAGTAAGCAAGTCT
1 TATCTC-CTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * * * **
37999886 TATCCACCTGAAGTTACAGTGGGGCAGACTGAAGATGTCAAACCT
1 TAT-CTCCTGAAGTTGCAGTGGAGCAGACT-AAGAAG-CAAGTCT
* * * *
37999931 TATCTCCCTGAAGTTACAGTGGAGCAG-GTTA-AAGTCGATAATCCT
1 TATCT-CCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGT-CT
37999976 ATATC-CCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
1 -TATCTCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* **
38000019 TATCCTCCTGAAGTTGCAGTGGTA-CAGACTGAAGATGGCAAACCT
1 TAT-CTCCTGAAGTTGCAGTGG-AGCAGACT-AAGA-AGCAAGTCT
* * * * * *
38000064 TATTTTCCTG-AGCATGCAGTGGAGCAG-GTTA-AAGCTGATAATCC
1 TA-TCTCCTGAAG-TTGCAGTGGAGCAGACTAAGAAGC--A-AGTCT
* * * * ** **
38000108 TATCCCCCTGAAGTTACAGTGGAGCGGATTAA-ATCCTTGGATCT
1 TAT-CTCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * * *
38000152 TATCTCTCTGAAGTTGCAG-AGAGCAGA-TCA-CATCTAGTCT
1 TATCTC-CTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
*
38000192 TATCTTTCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCT
1 TATC-TCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * *
38000236 TATCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAATCT
1 TAT-CTCCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCT
* * * *
38000281 TATCTCCCTGAAGTTGCAGTGGACCAGATTAA-AAGCCGATAATCC
1 TATCT-CCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCT
*
38000326 TATCTCTCTGAAGTTGCAATGGAGCAGACTAAG
1 TATCTC-CTGAAGTTGCAGTGGAGCAGACTAAG
38000359 TAGAGCAGAT
Statistics
Matches: 761, Mismatches: 147, Indels: 162
0.71 0.14 0.15
Matches are distributed among these distances:
39 1 0.00
40 80 0.11
41 42 0.06
42 28 0.04
43 67 0.09
44 331 0.43
45 201 0.26
46 8 0.01
47 3 0.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (42 bp):
TATCTCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
Found at i:37999703 original size:217 final size:217
Alignment explanation
Indices: 37999321--37999999 Score: 1087
Period size: 217 Copynumber: 3.1 Consensus size: 217
37999311 AAAGCCAATG
* ***
37999321 ATCCTATCTCTCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGC
1 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGC
* * *
37999386 AGAGAGCAGATCGCATCTAGTCTTACCTTCC-TGAAGTTGCAGTGGAGCAGACTAAGCAAGCAAG
66 AGAGAGAAGATCGCATCTAGTCTTATC-TCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAG
* * *
37999450 TCTTATCCTCCTGAAGTTACAGT-GAGGTAAACTGAAGATGGCAAATCTTATCTCCCTGAAGTTG
130 TCTTATCCTCCTGAAGTTACAGTGGA-GCAGACTGAAGATGGCAAACCTTATCTCCCTGAAGTTG
* * * *
37999514 CAGTGGAGCAGATCAGAGCCGATA
194 CAGTGGAGCAGGTTAAAGTCGATA
*
37999538 ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGC
1 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGC
37999603 AGAGAGAAGATCGCATCTAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
66 AGAGAGAAGATCGCATCTAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
37999668 CTTATCCTCCTGAAGTTACAGTGGAGCAGACTGAAGATGGCAAACCTTATCTCCCTGAAGTTGCA
131 CTTATCCTCCTGAAGTTACAGTGGAGCAGACTGAAGATGGCAAACCTTATCTCCCTGAAGTTGCA
37999733 -TGGAGCAGGTTAAAGTCGATA
196 GTGGAGCAGGTTAAAGTCGATA
* *
37999754 ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATCCTTGGATCTTATCTCTCTGAAGTTGC
1 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGC
* *
37999819 AGAGAGTAGATCGCATCTAGTCTTATCT-CTCTGAAGTTGCAGCGGAGCAGACTAAGTAAGCAAG
66 AGAGAGAAGATCGCATCTAGTCTTATCTCCT-TGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAG
* * * *
37999883 TCTTATCCACCTGAAGTTACAGTGGGGCAGACTGAAGATGTCAAACCTTATCTCCCTGAAGTTAC
130 TCTTATCCTCCTGAAGTTACAGTGGAGCAGACTGAAGATGGCAAACCTTATCTCCCTGAAGTTGC
37999948 AGTGGAGCAGGTTAAAGTCGATA
195 AGTGGAGCAGGTTAAAGTCGATA
*
37999971 ATCCTATATCCCTGAAGTTGCAGTGGAGC
1 ATCCTATCTCCCTGAAGTTGCAGTGGAGC
38000000 AGACTAAGTA
Statistics
Matches: 433, Mismatches: 25, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
215 2 0.00
216 203 0.47
217 226 0.52
218 2 0.00
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (217 bp):
ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGC
AGAGAGAAGATCGCATCTAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGT
CTTATCCTCCTGAAGTTACAGTGGAGCAGACTGAAGATGGCAAACCTTATCTCCCTGAAGTTGCA
GTGGAGCAGGTTAAAGTCGATA
Found at i:38000002 original size:133 final size:133
Alignment explanation
Indices: 37999849--38000132 Score: 419
Period size: 133 Copynumber: 2.1 Consensus size: 133
37999839 TCTTATCTCT
* *
37999849 CTGAAGTTGCAGCGGAGCAGACTAAGTAAGCAAGTCTTATCCACCTGAAGTTACAGTGGGGCAGA
1 CTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCACCTGAAGTTACAGTGGGACAGA
* *
37999914 CTGAAGATGTCAAACCTTATCTCCCTGAAG-TTACAGTGGAGCAGGTTAAAG-TCGATAATCCTA
66 CTGAAGATGGCAAACCTTATCTCCCTG-AGCATACAGTGGAGCAGGTTAAAGCT-GATAATCCTA
*
37999977 TATCC
129 TACCC
* * *
37999982 CTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGGTACAGA
1 CTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCACCTGAAGTTACAGTGGGACAGA
* * * *
38000047 CTGAAGATGGCAAACCTTATTTTCCTGAGCATGCAGTGGAGCAGGTTAAAGCTGATAATCCTATC
66 CTGAAGATGGCAAACCTTATCTCCCTGAGCATACAGTGGAGCAGGTTAAAGCTGATAATCCTATA
38000112 CCC
131 CCC
*
38000115 CTGAAGTTACAGTGGAGC
1 CTGAAGTTGCAGTGGAGC
38000133 GGATTAAATC
Statistics
Matches: 136, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
132 2 0.01
133 133 0.98
134 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (133 bp):
CTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCACCTGAAGTTACAGTGGGACAGA
CTGAAGATGGCAAACCTTATCTCCCTGAGCATACAGTGGAGCAGGTTAAAGCTGATAATCCTATA
CCC
Found at i:38000165 original size:350 final size:350
Alignment explanation
Indices: 37999634--38000365 Score: 1193
Period size: 350 Copynumber: 2.1 Consensus size: 350
37999624 CTTATCTCCT
37999634 TGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGGAGCAGAC
1 TGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGGAGCAGAC
* *
37999699 TGAAGATGGCAAACCTTATCTCCCTGAAGTTGCATGGAGCAGGTTAAAGTCGATAATCCTATCTC
66 TGAAGATGGCAAACCTTATCTCCCTGAAGATGCATGGAGCAGGTTAAAGTCGATAATCCTATCCC
* *
37999764 CCTGAAGTTGCAGTGGAGCAGATTAAATCCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGTAGA
131 CCTGAAGTTACAGTGGAGCAGATTAAATCCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
*
37999829 TCGCATCTAGTCTTATCTCTCTGAAGTTGCAGCGGAGCAGACTAAGTAAGCAAGTCTTATCCACC
196 TCACATCTAGTCTTATCTCTCTGAAGTTGCAGCGGAGCAGACTAAGTAAGCAAGTCTTATCCACC
* * *
37999894 TGAAGTTACAGTGGGGCAGACTGAAGATGTCAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGG
261 TGAAGTTACAGTGGGGCAGACTGAAGATGGCAAACCTTATCTCCCTGAAGTTACAGTGGACCAGA
*
37999959 TT-AAAGTCGATAATCCTATATCCC
326 TTAAAAGCCGATAATCCTATATCCC
*
37999983 TGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGGTA-CAGA
1 TGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGG-AGCAGA
* *
38000047 CTGAAGATGGCAAACCTTATTTTCCTG-AGCATGCAGTGGAGCAGGTTAAAG-CTGATAATCCTA
65 CTGAAGATGGCAAACCTTATCTCCCTGAAG-ATGCA-TGGAGCAGGTTAAAGTC-GATAATCCTA
*
38000110 TCCCCCTGAAGTTACAGTGGAGCGGATTAAATCCTTGGATCTTATCTCTCTGAAGTTGCAGAGAG
127 TCCCCCTGAAGTTACAGTGGAGCAGATTAAATCCTTGGATCTTATCTCTCTGAAGTTGCAGAGAG
* *
38000175 CAGATCACATCTAGTCTTATCTTTCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATC
192 CAGATCACATCTAGTCTTATCTCTCTGAAGTTGCAGCGGAGCAGACTAAGTAAGCAAGTCTTATC
* * * *
38000240 CTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAC
257 CACCTGAAGTTACAGTGGGGCAGACTGAAGATGGCAAACCTTATCTCCCTGAAGTTACAGTGGAC
* *
38000305 CAGATTAAAAGCCGATAATCCTATCTCTC
322 CAGATTAAAAGCCGATAATCCTATATCCC
*
38000334 TGAAGTTGCAATGGAGCAGACTAAGTAGAGCA
1 TGAAGTTGCAGTGGAGCAGACTAAGTA-AGCA
38000366 GATCGCATCA
Statistics
Matches: 355, Mismatches: 22, Indels: 9
0.92 0.06 0.02
Matches are distributed among these distances:
348 2 0.01
349 91 0.26
350 213 0.60
351 45 0.13
352 4 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (350 bp):
TGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGGAGCAGAC
TGAAGATGGCAAACCTTATCTCCCTGAAGATGCATGGAGCAGGTTAAAGTCGATAATCCTATCCC
CCTGAAGTTACAGTGGAGCAGATTAAATCCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
TCACATCTAGTCTTATCTCTCTGAAGTTGCAGCGGAGCAGACTAAGTAAGCAAGTCTTATCCACC
TGAAGTTACAGTGGGGCAGACTGAAGATGGCAAACCTTATCTCCCTGAAGTTACAGTGGACCAGA
TTAAAAGCCGATAATCCTATATCCC
Found at i:38001836 original size:23 final size:23
Alignment explanation
Indices: 38001810--38001852 Score: 63
Period size: 21 Copynumber: 1.9 Consensus size: 23
38001800 TAAATCTATA
38001810 TATATACATGT-ATATTTATTGT
1 TATATACATGTAATATTTATTGT
38001832 T-TATACATGTACATATTTATT
1 TATATACATGTA-ATATTTATT
38001853 TTTTAACTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.47
22 1 0.05
23 9 0.47
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (23 bp):
TATATACATGTAATATTTATTGT
Found at i:38001838 original size:21 final size:22
Alignment explanation
Indices: 38001812--38001857 Score: 67
Period size: 23 Copynumber: 2.1 Consensus size: 22
38001802 AATCTATATA
38001812 TATACATGT-ATATTTATTGTT
1 TATACATGTAATATTTATTGTT
*
38001833 TATACATGTACATATTTATTTTT
1 TATACATGTA-ATATTTATTGTT
38001856 TA
1 TA
38001858 ACTAATGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 9 0.41
23 13 0.59
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (22 bp):
TATACATGTAATATTTATTGTT
Found at i:38003344 original size:3 final size:3
Alignment explanation
Indices: 38003336--38003397 Score: 74
Period size: 3 Copynumber: 20.3 Consensus size: 3
38003326 ATAGGTAAGT
*
38003336 ATA ATA ATA ATAA ATA AT- ATA ATA ATA ATTA TTA AT- ATGA ATA ATA
1 ATA ATA ATA AT-A ATA ATA ATA ATA ATA A-TA ATA ATA AT-A ATA ATA
38003382 ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA A
38003398 CAAATAATGC
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
2 4 0.08
3 41 0.79
4 7 0.13
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:38003358 original size:18 final size:18
Alignment explanation
Indices: 38003335--38003405 Score: 85
Period size: 18 Copynumber: 4.1 Consensus size: 18
38003325 TATAGGTAAG
38003335 TATAATAATAATAAATAA
1 TATAATAATAATAAATAA
* *
38003353 TATAATAATAATTATTAA
1 TATAATAATAATAAATAA
38003371 TATGAATAATAAT-AAT-A
1 TAT-AATAATAATAAATAA
*
38003388 -ATAATAATAACAAATAA
1 TATAATAATAATAAATAA
38003405 T
1 T
38003406 GCAATAGTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
15 8 0.18
16 5 0.11
17 2 0.04
18 21 0.47
19 9 0.20
ACGTcount: A:0.62, C:0.01, G:0.01, T:0.35
Consensus pattern (18 bp):
TATAATAATAATAAATAA
Found at i:38004912 original size:50 final size:50
Alignment explanation
Indices: 38004858--38005441 Score: 218
Period size: 50 Copynumber: 11.7 Consensus size: 50
38004848 TTGGGGAAAC
* *
38004858 AAGATTCGCCGTTGTGACTTCAATCTATTCCACTACATCGCCAGGGAAGT
1 AAGATCCGCCGTTGTGACTTCAATCTATTCCACTGCATCGCCAGGGAAGT
** * ** * * **
38004908 AAGATCCGCCGTTGTGGTTTCAATCTTTTTAATTGCAAT-GTCAGGGAAAC
1 AAGATCCGCCGTTGTGACTTCAATCTATTCCACTGC-ATCGCCAGGGAAGT
* * * * *
38004958 CAGATCCGCCATCGT-AGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGT
1 AAGATCCGCCGTTGTGA-CTTCAATCTATTCCACTGCATCGCCAGGGAAGT
* * * ** * * **
38005008 AAGATCTGCCGTTGTGGCTTCAATCTTTTTAATTGCAAT-GTCAGGGAAAC
1 AAGATCCGCCGTTGTGACTTCAATCTATTCCACTGC-ATCGCCAGGGAAGT
** * * *
38005058 CGGATCCGCCATCGT-AGCTTCAATCTATTCCACTGCACCGCCAGGGAAGT
1 AAGATCCGCCGTTGTGA-CTTCAATCTATTCCACTGCATCGCCAGGGAAGT
* * * * ** * *** **
38005108 AAGATCTGCCGTTGTGGCTTCAATTTTTTTAATTGCAAT-GTTGGGGAAAC
1 AAGATCCGCCGTTGTGACTTCAATCTATTCCACTGC-ATCGCCAGGGAAGT
* * * * * *
38005158 CAGATCCACCGTCGT-AGCTTCAATCTGTTCTACTGCACCGCCAGGGAAGT
1 AAGATCCGCCGTTGTGA-CTTCAATCTATTCCACTGCATCGCCAGGGAAGT
* * ** * * * * **
38005208 AAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGTAAT-GTCGGGGAAAC
1 AAGATCCGCCGTTGTGACTTCAATCTATTCCACTG-CATCGCCAGGGAAGT
* * * * *
38005258 CAGATCCGCCGTCGT-AGCTTTAATCTATTCCACTGCATCGCTAAGGAAGT
1 AAGATCCGCCGTTGTGA-CTTCAATCTATTCCACTGCATCGCCAGGGAAGT
* ** * * ** * * * **
38005308 AAGATTCGTTGTTGTGGCTTTAATCT-TTAAATTGCAAT-GTCGGGGAAAC
1 AAGATCCGCCGTTGTGACTTCAATCTATTCCACTGC-ATCGCCAGGGAAGT
* * * * * * *
38005357 CAGATCCACCGTCGT-AGCTTCAATCTGTTCCACTACACCGCCAGGGAAGC
1 AAGATCCGCCGTTGTGA-CTTCAATCTATTCCACTGCATCGCCAGGGAAGT
* * * **
38005407 AAGATTCACCGTTGTGGCTTCAATCCGTTCCACTG
1 AAGATCCGCCGTTGTGACTTCAATCTATTCCACTG
38005442 TAGTGCCAAA
Statistics
Matches: 363, Mismatches: 150, Indels: 42
0.65 0.27 0.08
Matches are distributed among these distances:
49 34 0.09
50 324 0.89
51 5 0.01
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (50 bp):
AAGATCCGCCGTTGTGACTTCAATCTATTCCACTGCATCGCCAGGGAAGT
Found at i:38004979 original size:100 final size:100
Alignment explanation
Indices: 38004825--38005431 Score: 842
Period size: 100 Copynumber: 6.1 Consensus size: 100
38004815 GGATTATTTT
* * * * *
38004825 CTTCAAT-TTGTTTAACTGCAATGTTGGGGAAACAAGATTCGCCGTTGT-GACTTCAATCTATTC
1 CTTCAATCTT-TTTAATTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAG-CTTCAATCTATTC
* *
38004888 CACTACATCGCCAGGGAAGTAAGATCCGCCGTTGTGG
64 CACTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGG
* * * *
38004925 TTTCAATCTTTTTAATTGCAATGTCAGGGAAACCAGATCCGCCATCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCA
*
38004990 CTGCACCGCCAGGGAAGTAAGATCTGCCGTTGTGG
66 CTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGG
* * *
38005025 CTTCAATCTTTTTAATTGCAATGTCAGGGAAACCGGATCCGCCATCGTAGCTTCAATCTATTCCA
1 CTTCAATCTTTTTAATTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCA
*
38005090 CTGCACCGCCAGGGAAGTAAGATCTGCCGTTGTGG
66 CTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGG
* * * * *
38005125 CTTCAATTTTTTTAATTGCAATGTTGGGGAAACCAGATCCACCGTCGTAGCTTCAATCTGTTCTA
1 CTTCAATCTTTTTAATTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCA
38005190 CTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGG
66 CTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGG
* *
38005225 CTTCAATCTTTTTAATTGTAATGTCGGGGAAACCAGATCCGCCGTCGTAGCTTTAATCTATTCCA
1 CTTCAATCTTTTTAATTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCA
* * * * **
38005290 CTGCATCGCTAAGGAAGTAAGATTCGTTGTTGTGG
66 CTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGG
* * * *
38005325 CTTTAATC-TTTAAATTGCAATGTCGGGGAAACCAGATCCACCGTCGTAGCTTCAATCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCA
* * * *
38005389 CTACACCGCCAGGGAAGCAAGATTCACCGTTGTGG
66 CTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGG
38005424 CTTCAATC
1 CTTCAATC
38005432 CGTTCCACTG
Statistics
Matches: 453, Mismatches: 52, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
99 85 0.19
100 365 0.81
101 3 0.01
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (100 bp):
CTTCAATCTTTTTAATTGCAATGTCGGGGAAACCAGATCCGCCGTCGTAGCTTCAATCTATTCCA
CTGCACCGCCAGGGAAGTAAGATCCGCCGTTGTGG
Found at i:38005772 original size:88 final size:88
Alignment explanation
Indices: 38005623--38005800 Score: 241
Period size: 88 Copynumber: 2.0 Consensus size: 88
38005613 GGCGATAAGA
* * * * * *
38005623 CTGGTATCTTCGATCTGCTTTGCTGCCAGTACAGGAAGGCAAGATCTGTCATTTTCAACCTACTC
1 CTGGTATCCTCGACCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTCATTTTCAACCTACTC
*
38005688 CACTGCTGCTCAGGGAGACAAGG
66 CACTGCTACTCAGGGAGACAAGG
* * *
38005711 CTGGTATCCTCGACCTACTTCGCTGTCAATACAGGAAGACAATATCTG-CTATTTTGAACCTACT
1 CTGGTATCCTCGACCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTC-ATTTTCAACCTACT
*
38005775 CCACTGCTACTCAGGGAGATAAGG
65 CCACTGCTACTCAGGGAGACAAGG
38005799 CT
1 CT
38005801 AAAGTTTCAC
Statistics
Matches: 78, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
87 1 0.01
88 77 0.99
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (88 bp):
CTGGTATCCTCGACCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTCATTTTCAACCTACTC
CACTGCTACTCAGGGAGACAAGG
Found at i:38007151 original size:10 final size:9
Alignment explanation
Indices: 38007099--38007159 Score: 50
Period size: 10 Copynumber: 6.3 Consensus size: 9
38007089 ATCATTTTTC
*
38007099 TTTTTTCGA
1 TTTTTTTGA
**
38007108 TTTTGTTTTT
1 TTTT-TTTGA
38007118 TTTATTTTGA
1 TTT-TTTTGA
*
38007128 TATTTTTTTA
1 T-TTTTTTGA
38007138 TTTTTTTGA
1 TTTTTTTGA
38007147 CTTTTTTTGA
1 -TTTTTTTGA
38007157 TTT
1 TTT
38007160 GATTTTTTTT
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
9 14 0.34
10 24 0.59
11 3 0.07
ACGTcount: A:0.11, C:0.03, G:0.08, T:0.77
Consensus pattern (9 bp):
TTTTTTTGA
Found at i:38007152 original size:19 final size:18
Alignment explanation
Indices: 38007093--38007159 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 18
38007083 TTTTTCATCA
* *
38007093 TTTTTCTTTTTTCGATTT
1 TTTTTATTTTTTTGATTT
*
38007111 TGTTTTTTTTATTTTGATATT
1 T-TTTTATTT-TTTTGAT-TT
38007132 TTTTTATTTTTTTGACTTT
1 TTTTTATTTTTTTGA-TTT
*
38007151 TTTTGATTT
1 TTTTTATTT
38007160 GATTTTTTTT
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
18 1 0.02
19 23 0.56
20 14 0.34
21 3 0.07
ACGTcount: A:0.10, C:0.04, G:0.07, T:0.78
Consensus pattern (18 bp):
TTTTTATTTTTTTGATTT
Found at i:38007178 original size:34 final size:34
Alignment explanation
Indices: 38007099--38007178 Score: 80
Period size: 33 Copynumber: 2.4 Consensus size: 34
38007089 ATCATTTTTC
*
38007099 TTTTTTC-GA-TTTTGTTTTTTTTATTTTGATAT
1 TTTTTTCAGATTTTTGTTTTTTTGATTTTGATAT
**
38007131 TTTTTT-ATTTTTTTGACTTTTTTTGA-TTTGAT-T
1 TTTTTTCAGATTTTTG--TTTTTTTGATTTTGATAT
38007164 TTTTTTCAGATTTTT
1 TTTTTTCAGATTTTT
38007179 CTTTGATTGA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
32 6 0.16
33 12 0.32
34 12 0.32
35 8 0.21
ACGTcount: A:0.12, C:0.04, G:0.09, T:0.75
Consensus pattern (34 bp):
TTTTTTCAGATTTTTGTTTTTTTGATTTTGATAT
Found at i:38011696 original size:3 final size:3
Alignment explanation
Indices: 38011688--38011783 Score: 63
Period size: 3 Copynumber: 30.3 Consensus size: 3
38011678 ATATGTAAGT
*
38011688 ATA ATA ATAA ATA AT- ATA ATA ATA ATTA TTA AT- ATGA ATA ATA ATA
1 ATA ATA AT-A ATA ATA ATA ATA ATA A-TA ATA ATA AT-A ATA ATA ATA
* * *
38011734 ATA ATAA ATA ATGCA ATA ATA ATG ATGCA ATA ACA ATA TTA ATA A-A
1 ATA AT-A ATA AT--A ATA ATA ATA AT--A ATA ATA ATA ATA ATA ATA
38011780 ATA A
1 ATA A
38011784 ACTAAAATAG
Statistics
Matches: 74, Mismatches: 8, Indels: 22
0.71 0.08 0.21
Matches are distributed among these distances:
2 6 0.08
3 53 0.72
4 10 0.14
5 5 0.07
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:38011707 original size:15 final size:15
Alignment explanation
Indices: 38011687--38011755 Score: 72
Period size: 15 Copynumber: 4.7 Consensus size: 15
38011677 TATATGTAAG
38011687 TATAATAATAAATAA
1 TATAATAATAAATAA
*
38011702 TATAATAAT-AATTA
1 TATAATAATAAATAA
*
38011716 T-TAAT-ATGAATAA
1 TATAATAATAAATAA
38011729 TAATAATAATAAATAA
1 T-ATAATAATAAATAA
**
38011745 TGCAATAATAA
1 TATAATAATAA
38011756 TGATGCAATA
Statistics
Matches: 45, Mismatches: 5, Indels: 8
0.78 0.09 0.14
Matches are distributed among these distances:
12 2 0.04
13 9 0.20
14 5 0.11
15 21 0.47
16 8 0.18
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (15 bp):
TATAATAATAAATAA
Found at i:38011731 original size:22 final size:24
Alignment explanation
Indices: 38011688--38011756 Score: 85
Period size: 22 Copynumber: 3.1 Consensus size: 24
38011678 ATATGTAAGT
38011688 ATAATAATAAATAAT---ATAATA
1 ATAATAATAAATAATGCAATAATA
* *
38011709 ATAATTATTAAT-ATG-AATAATA
1 ATAATAATAAATAATGCAATAATA
38011731 ATAATAATAAATAATGCAATAATA
1 ATAATAATAAATAATGCAATAATA
38011755 AT
1 AT
38011757 GATGCAATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
20 2 0.05
21 10 0.25
22 16 0.40
23 3 0.08
24 9 0.22
ACGTcount: A:0.61, C:0.01, G:0.03, T:0.35
Consensus pattern (24 bp):
ATAATAATAAATAATGCAATAATA
Found at i:38011763 original size:14 final size:15
Alignment explanation
Indices: 38011733--38011766 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
38011723 GAATAATAAT
38011733 AATAATAAATAATGC
1 AATAATAAATAATGC
*
38011748 AATAAT-AATGATGC
1 AATAATAAATAATGC
38011762 AATAA
1 AATAA
38011767 CAATATTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.67
15 6 0.33
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.26
Consensus pattern (15 bp):
AATAATAAATAATGC
Found at i:38011783 original size:43 final size:43
Alignment explanation
Indices: 38011688--38011784 Score: 115
Period size: 43 Copynumber: 2.3 Consensus size: 43
38011678 ATATGTAAGT
* * * **
38011688 ATAATAATAAATAATATAATAATAATTATTAATATGAATAATA
1 ATAATAATAAATAATACAATAATAATGATCAATAACAATAATA
* *
38011731 ATAATAATAAATAATGCAATAATAATGATGCAATAACAATATTA
1 ATAATAATAAATAATACAATAATAATGAT-CAATAACAATAATA
38011775 ATAA-AATAAA
1 ATAATAATAAA
38011785 CTAAAATAGC
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
43 32 0.70
44 14 0.30
ACGTcount: A:0.61, C:0.03, G:0.04, T:0.32
Consensus pattern (43 bp):
ATAATAATAAATAATACAATAATAATGATCAATAACAATAATA
Found at i:38020265 original size:12 final size:12
Alignment explanation
Indices: 38020248--38020272 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
38020238 AAATTGAGAC
38020248 TATCCCTTCAGA
1 TATCCCTTCAGA
38020260 TATCCCTTCAGA
1 TATCCCTTCAGA
38020272 T
1 T
38020273 TTTCTTGTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.08, T:0.36
Consensus pattern (12 bp):
TATCCCTTCAGA
Found at i:38021089 original size:132 final size:133
Alignment explanation
Indices: 38020850--38021712 Score: 1096
Period size: 132 Copynumber: 6.6 Consensus size: 133
38020840 CGATGACAAG
* * * * *
38020850 TCCTATCTCCTTGAGCAGCAGTGGAGTAGGTTGAATATTGTAGATCCTGTCTCTCTAAGCAGTAG
1 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTTGTCTCCCTAAGCAGTAG
* * * *
38020915 CGGAGCAGATC-AAAGACGTTGAGTCTTATCTTCCCAAAGTAGTAGGGAAACAGATTTAAGCCAC
66 CGGAGCAGATCGAAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCAC
*
38020979 CAA
131 TAA
*
38020982 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTTGTTTCCCTAAGCAGTAG
1 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTTGTCTCCCTAAGCAGTAG
*
38021047 C-G-GCAGATCGAATAGACGGTGAATCTTATCTTCCCAATGTAGTAGGGAAGCAGATTTAAGCCA
66 CGGAGCAGATCGAA-AGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCA
38021110 CTAA
130 CTAA
* *
38021114 TCCTATCTCCTTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAAGCAGTAG
1 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTTGTCTCCCTAAGCAGTAG
* * * *
38021179 CGGAGCAGATCG-AATACAGAGAATCTTATCTTCCCAAGGTAGTAGGAAAGCAGATTTAAGCCAC
66 CGGAGCAGATCGAAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCAC
38021243 TAA
131 TAA
* * *
38021246 TCCTATCTCCCTGAGCGGCAGTGGAGTAGGTTGAAGAATGTAGATCTGGTCTCCCTAATCAGTAG
1 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTTGTCTCCCTAAGCAGTAG
* * * *
38021311 CGGAGCAGATCG-AAGACAGTGAATCTTATCTTCCTAAGGTAGTAGGGAAGCAGATTTAGGCTAC
66 CGGAGCAGATCGAAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCAC
38021375 TAA
131 TAA
* *
38021378 T-CTCATCTCCCTGAGCAGCAGT-G-G-A-G-T--AG---GTAGATCTAGTCTCCCTAAGTAGTA
1 TCCT-ATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTTGTCTCCCTAAGCAGTA
* * *
38021432 GCGGAGCAGATCGAAA-ACGGTAAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAGGCTA
65 GCGGAGCAGATCGAAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCA
38021496 CTAA
130 CTAA
* * *
38021500 T-CTCATCTCCCTGAGCAACAGTGGAGTAAGTTGAAGAATGTAGATCTTGTCTCCTTAAGCAGTA
1 TCCT-ATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTTGTCTCCCTAAGCAGTA
* * ** * * * *
38021564 GTGGAGTAGATAAAAAAAATGGCGAATCTTATCTTCCCAAGATAGTAGGGAAGCAGATTTAAGCC
65 GCGGAGCAGAT-CGAAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCC
*
38021629 ACCAA
129 ACTAA
* * * * * * *
38021634 TACTATCTCCCTGAGCAACAGTGGAGTAGGTTGAAGATTGCAGATCATGTCTCCTTGAGCAGTAG
1 TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTTGTCTCCCTAAGCAGTAG
** *
38021699 TAGAGCGGATCGAA
66 CGGAGCAGATCGAA
38021713 GACATCGAAT
Statistics
Matches: 652, Mismatches: 60, Indels: 37
0.87 0.08 0.05
Matches are distributed among these distances:
122 105 0.16
123 3 0.00
124 1 0.00
125 3 0.00
126 1 0.00
127 2 0.00
128 1 0.00
129 3 0.00
130 8 0.01
131 6 0.01
132 393 0.60
133 7 0.01
134 117 0.18
135 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (133 bp):
TCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGAATGTAGATCTTGTCTCCCTAAGCAGTAG
CGGAGCAGATCGAAAGACGGTGAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCAC
TAA
Found at i:38021502 original size:122 final size:122
Alignment explanation
Indices: 38021285--38021664 Score: 449
Period size: 122 Copynumber: 3.0 Consensus size: 122
38021275 GTTGAAGAAT
* * * *
38021285 GTAGATCTGGTCTCCCTAA-TCAGTAGCGGAGCAGATCGAAGACAGTGAATCTTATCTTCCTAAG
1 GTAGATCTAGTCTCCCTAAGT-AGTAGCGGAGCAGATCGAAAACGGTGAATCTTATCTTCCCAAG
*
38021349 GTAGTAGGGAAGCAGATTTAGGCTACTAATCTCATCTCCCTGAGCAGCAGTGGAGTAG
65 GTAGTAGGGAAGCAGATTTAGGCTACTAATCTCATCTCCCTGAGCAACAGTGGAGTAG
*
38021407 GTAGATCTAGTCTCCCTAAGTAGTAGCGGAGCAGATCGAAAACGGTAAATCTTATCTTCCCAAGG
1 GTAGATCTAGTCTCCCTAAGTAGTAGCGGAGCAGATCGAAAACGGTGAATCTTATCTTCCCAAGG
38021472 TAGTAGGGAAGCAGATTTAGGCTACTAATCTCATCTCCCTGAGCAACAGTGGAGTAAGTTGAAG
66 TAGTAGGGAAGCAGATTTAGGCTACTAATCTCATCTCCCTGAGCAACAGT-G-G--AG-T--AG
* * * * * ** * *
38021536 AATGTAGATCTTGTCTCCTTAAGCAGTAGTGGAGTAGATAAAAAAAATGGCGAATCTTATCTTCC
1 ---GTAGATCTAGTCTCCCTAAGTAGTAGCGGAGCAGAT--CGAAAACGGTGAATCTTATCTTCC
* * * *
38021601 CAAGATAGTAGGGAAGCAGATTTAAGCCACCAATACT-ATCTCCCTGAGCAACAGTGGAGTAG
61 CAAGGTAGTAGGGAAGCAGATTTAGGCTACTAAT-CTCATCTCCCTGAGCAACAGTGGAGTAG
38021663 GT
1 GT
38021665 TGAAGATTGC
Statistics
Matches: 224, Mismatches: 20, Indels: 26
0.83 0.07 0.10
Matches are distributed among these distances:
122 107 0.48
123 2 0.01
124 3 0.01
126 2 0.01
127 3 0.01
129 3 0.01
130 2 0.01
132 32 0.14
133 1 0.00
134 67 0.30
135 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.25
Consensus pattern (122 bp):
GTAGATCTAGTCTCCCTAAGTAGTAGCGGAGCAGATCGAAAACGGTGAATCTTATCTTCCCAAGG
TAGTAGGGAAGCAGATTTAGGCTACTAATCTCATCTCCCTGAGCAACAGTGGAGTAG
Found at i:38021806 original size:51 final size:51
Alignment explanation
Indices: 38021724--38021837 Score: 138
Period size: 51 Copynumber: 2.2 Consensus size: 51
38021714 ACATCGAATT
* * ** *
38021724 TTATTTCCCTGGCGTTGCAATGGAATGGATTAAAGCTGAAGGCAGCAAATC
1 TTATTTCCCTGGCATTGCAACGGAACAGATTAAAGCTGAAGGCAACAAATC
* * *
38021775 TTATTTCCCTGGCATTGTAACGGAACAGATTAAAGTTGAAGGCAACGAATC
1 TTATTTCCCTGGCATTGCAACGGAACAGATTAAAGCTGAAGGCAACAAATC
* *
38021826 TCATCTCCCTGG
1 TTATTTCCCTGG
38021838 TATTTAAAAT
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (51 bp):
TTATTTCCCTGGCATTGCAACGGAACAGATTAAAGCTGAAGGCAACAAATC
Found at i:38022563 original size:5 final size:5
Alignment explanation
Indices: 38022548--38022580 Score: 50
Period size: 5 Copynumber: 6.6 Consensus size: 5
38022538 TATCTACTTA
38022548 TTTATT TTTAT TTTAT TTTA- TTTAT TTTAT TTT
1 TTTA-T TTTAT TTTAT TTTAT TTTAT TTTAT TTT
38022581 TGTTTGTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.15
5 18 0.69
6 4 0.15
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:38022573 original size:14 final size:14
Alignment explanation
Indices: 38022554--38022580 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
38022544 CTTATTTATT
38022554 TTTATTTTATTTTA
1 TTTATTTTATTTTA
38022568 TTTATTTTATTTT
1 TTTATTTTATTTT
38022581 TGTTTGTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:38023294 original size:20 final size:19
Alignment explanation
Indices: 38023264--38023301 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
38023254 AATCCAAGGC
*
38023264 ATTTTTTTATTTATCTATT
1 ATTTTTTTATTTACCTATT
38023283 ATTTTATTTATTTACCTAT
1 ATTTT-TTTATTTACCTAT
38023302 ACTTATTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (19 bp):
ATTTTTTTATTTACCTATT
Found at i:38023296 original size:24 final size:24
Alignment explanation
Indices: 38023263--38023332 Score: 65
Period size: 24 Copynumber: 2.9 Consensus size: 24
38023253 TAATCCAAGG
*
38023263 CATTTTTTTATTTATCTATTATTTT
1 CATTTATTTATTTAT-TATTATTTT
**
38023288 -ATTTATTTACCTA-TACTTATTTT
1 CATTTATTTATTTATTA-TTATTTT
38023311 CATTTA-TTATTTATTTATTATT
1 CATTTATTTATTTA-TTATTATT
38023333 ATTCCTTCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 9
0.72 0.10 0.18
Matches are distributed among these distances:
22 2 0.06
23 12 0.33
24 20 0.56
25 2 0.06
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.67
Consensus pattern (24 bp):
CATTTATTTATTTATTATTATTTT
Found at i:38023535 original size:3 final size:3
Alignment explanation
Indices: 38023527--38023612 Score: 68
Period size: 3 Copynumber: 29.0 Consensus size: 3
38023517 ATATTCGTTG
* * * * *
38023527 TTA TTA TTA TCA TTC TTA TCT- TCA TTA TTA CTA TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
38023572 ATA TTA TTA TTA TTA TTA GTA TTG TTA TTA -TA TTT TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
38023613 CAATTTATCT
Statistics
Matches: 62, Mismatches: 18, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
2 2 0.03
3 59 0.95
4 1 0.02
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:38026995 original size:28 final size:28
Alignment explanation
Indices: 38026963--38027055 Score: 73
Period size: 33 Copynumber: 3.2 Consensus size: 28
38026953 AATTGTCGAT
38026963 TAATTAAATAAATATTCATATTTCATAA
1 TAATTAAATAAATATTCATATTTCATAA
* * * *
38026991 TAATTCTATGAATAATTTATTTATTTTTGAT--
1 TAA-T-TA--AATAA-ATATTCATATTTCATAA
*
38027022 TAATTAAATAAATAATCATATTTCATAA
1 TAATTAAATAAATATTCATATTTCATAA
*
38027050 TGATTA
1 TAATTA
38027056 TCATAACTTA
Statistics
Matches: 48, Mismatches: 10, Indels: 14
0.67 0.14 0.19
Matches are distributed among these distances:
26 10 0.21
27 5 0.10
28 8 0.17
29 3 0.06
30 3 0.06
31 3 0.06
32 5 0.10
33 11 0.23
ACGTcount: A:0.44, C:0.05, G:0.03, T:0.47
Consensus pattern (28 bp):
TAATTAAATAAATATTCATATTTCATAA
Found at i:38027023 original size:59 final size:59
Alignment explanation
Indices: 38026916--38027050 Score: 225
Period size: 59 Copynumber: 2.3 Consensus size: 59
38026906 ATTTAACTAT
38026916 TAATCATATTTCATAATAATTCTATGAATAATTAATTAATTGTCGATTAATTAAATAAA
1 TAATCATATTTCATAATAATTCTATGAATAATTAATTAATTGTCGATTAATTAAATAAA
* * * * *
38026975 TATTCATATTTCATAATAATTCTATGAATAATTTATTTATTTTTGATTAATTAAATAAA
1 TAATCATATTTCATAATAATTCTATGAATAATTAATTAATTGTCGATTAATTAAATAAA
38027034 TAATCATATTTCATAAT
1 TAATCATATTTCATAAT
38027051 GATTATCATA
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 70 1.00
ACGTcount: A:0.43, C:0.07, G:0.04, T:0.47
Consensus pattern (59 bp):
TAATCATATTTCATAATAATTCTATGAATAATTAATTAATTGTCGATTAATTAAATAAA
Found at i:38036105 original size:66 final size:65
Alignment explanation
Indices: 38035993--38036130 Score: 179
Period size: 66 Copynumber: 2.1 Consensus size: 65
38035983 GCAAATTGCT
* * *
38035993 CAACTTAAAGCGAAGGCAGCATCGAGAGAAGCAGAGGTTCAAAGAAAATATGAAGAACTTCAGCT
1 CAACTTAAAACGAAGGCAGCAGCGAGAGAAGCAGAGG-TCAAAGAAAATATGAAGAACTCCAGCT
38036058 A
65 A
* * * *
38036059 CAACTTAAAACGGAGGCAGCAGCTAGGGAAGCAGAGG-CAAGCAGAAAATATGACGAACTCCAGC
1 CAACTTAAAACGAAGGCAGCAGCGAGAGAAGCAGAGGTCAA--AGAAAATATGAAGAACTCCAGC
38036123 TA
64 TA
38036125 CAACTT
1 CAACTT
38036131 CAGAATATGA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
64 3 0.05
66 60 0.95
ACGTcount: A:0.42, C:0.20, G:0.25, T:0.14
Consensus pattern (65 bp):
CAACTTAAAACGAAGGCAGCAGCGAGAGAAGCAGAGGTCAAAGAAAATATGAAGAACTCCAGCTA
Found at i:38037887 original size:20 final size:20
Alignment explanation
Indices: 38037864--38037904 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
38037854 CTATTCAAAC
* *
38037864 AATATTACTTGAATAGTTAT
1 AATATTACATGAATAATTAT
*
38037884 AATATTAGATGAATAATTAT
1 AATATTACATGAATAATTAT
38037904 A
1 A
38037905 TGTCTTTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.02, G:0.10, T:0.41
Consensus pattern (20 bp):
AATATTACATGAATAATTAT
Found at i:38038611 original size:19 final size:20
Alignment explanation
Indices: 38038587--38038639 Score: 60
Period size: 19 Copynumber: 2.8 Consensus size: 20
38038577 TAATTATTAC
38038587 AAATATCATTATTTTTA-GT-
1 AAATAT-ATTATTTTTATGTG
38038606 AAATATATT-TTTTATATGTG
1 AAATATATTATTTT-TATGTG
38038626 AAATAT-TTATTTTT
1 AAATATATTATTTTT
38038640 CCTCCATATC
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 4 0.13
18 5 0.17
19 11 0.37
20 10 0.33
ACGTcount: A:0.36, C:0.02, G:0.06, T:0.57
Consensus pattern (20 bp):
AAATATATTATTTTTATGTG
Found at i:38038851 original size:18 final size:18
Alignment explanation
Indices: 38038795--38038852 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
38038785 ATATAGGTGA
*
38038795 AAAT-ATAATGATCTTTG
1 AAATAATAATGATATTTG
* *
38038812 AAATAAT-TTAGATA--TA
1 AAATAATAAT-GATATTTG
38038828 AAATAATAATGATATTTG
1 AAATAATAATGATATTTG
38038846 AAATAAT
1 AAATAAT
38038853 TATTTGATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 9
0.69 0.11 0.20
Matches are distributed among these distances:
16 12 0.39
17 6 0.19
18 13 0.42
ACGTcount: A:0.52, C:0.02, G:0.09, T:0.38
Consensus pattern (18 bp):
AAATAATAATGATATTTG
Found at i:38038865 original size:106 final size:101
Alignment explanation
Indices: 38038707--38038905 Score: 256
Period size: 106 Copynumber: 1.9 Consensus size: 101
38038697 GAAATAATTA
* * *
38038707 TTTGAAATATTTCACATATAAAAATAGTAATATTTGAAATTATTATTTTTTATAATATTAGAATT
1 TTTGAAATATTTCACATATAAAAATAATAATATTTGAAATAATTATTTTTTATAATATTAAAATT
* *
38038772 TATCATACCCGCAATATAGGTGAAAATATAATGATC
66 TAACATACCCACAATATAGGTGAAAATATAATGATC
* *
38038808 TTTGAAATAATTT-AGATATAAAATAATAATGATATTTGAAATAATTATTTGATTTTATAATATT
1 TTTGAAAT-ATTTCACATAT-AAA-AATAATAATATTTGAAATAATTA-TT--TTTTATAATATT
* *
38038872 AAAATTTAACATACCCACAATGTAGGTGGAAATA
60 AAAATTTAACATACCCACAATATAGGTGAAAATA
38038906 ATAAATATTT
Statistics
Matches: 83, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
101 13 0.16
102 7 0.08
103 20 0.24
104 2 0.02
106 41 0.49
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.40
Consensus pattern (101 bp):
TTTGAAATATTTCACATATAAAAATAATAATATTTGAAATAATTATTTTTTATAATATTAAAATT
TAACATACCCACAATATAGGTGAAAATATAATGATC
Found at i:38047479 original size:33 final size:34
Alignment explanation
Indices: 38047437--38047507 Score: 135
Period size: 33 Copynumber: 2.1 Consensus size: 34
38047427 GTAAAGCAAT
38047437 CTAATGGACTTGGCTTGAATTAGCCATACAT-AA
1 CTAATGGACTTGGCTTGAATTAGCCATACATAAA
38047470 CTAATGGACTTGGCTTGAATTAGCCATACATAAA
1 CTAATGGACTTGGCTTGAATTAGCCATACATAAA
38047504 CTAA
1 CTAA
38047508 ACTACGTACC
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
33 31 0.84
34 6 0.16
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30
Consensus pattern (34 bp):
CTAATGGACTTGGCTTGAATTAGCCATACATAAA
Found at i:38052708 original size:3 final size:3
Alignment explanation
Indices: 38052702--38052731 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
38052692 GATAATAATA
38052702 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
38052732 CATCAGTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:38053577 original size:17 final size:19
Alignment explanation
Indices: 38053541--38053579 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
38053531 GTTGCTGATA
38053541 TTTCGTTTTTTGCTGCTTG
1 TTTCGTTTTTTGCTGCTTG
*
38053560 TTTCTTTTTTTG-TG-TTG
1 TTTCGTTTTTTGCTGCTTG
38053577 TTT
1 TTT
38053580 GCAGATCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 2 0.11
19 11 0.58
ACGTcount: A:0.00, C:0.10, G:0.18, T:0.72
Consensus pattern (19 bp):
TTTCGTTTTTTGCTGCTTG
Found at i:38064662 original size:68 final size:67
Alignment explanation
Indices: 38064550--38064682 Score: 214
Period size: 68 Copynumber: 2.0 Consensus size: 67
38064540 AAGCATATAT
38064550 TTAGCCAATTTGTTTTAGGGTTCATAAGAAATTAGGGATCTTTTTAGTTTGTATGATTTTTGTGT
1 TTAGCCAATTTGTTTTAGGGTTCATAAGAAATTAGGGATCTTTTTAGTTTGTATGA-TTTTGTGT
38064615 CAG
65 CAG
* * *
38064618 TTAGCCAATTTGTTTTTGGGTTCATAAGAAATT-GGAGATTTTTTTAGTTTGTTTGATTTTGTGT
1 TTAGCCAATTTGTTTTAGGGTTCATAAGAAATTAGG-GATCTTTTTAGTTTGTATGATTTTGTGT
38064682 C
65 C
38064683 GGCTGGAATA
Statistics
Matches: 61, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
67 11 0.18
68 50 0.82
ACGTcount: A:0.22, C:0.07, G:0.22, T:0.50
Consensus pattern (67 bp):
TTAGCCAATTTGTTTTAGGGTTCATAAGAAATTAGGGATCTTTTTAGTTTGTATGATTTTGTGTC
AG
Found at i:38073124 original size:96 final size:97
Alignment explanation
Indices: 38073005--38073209 Score: 254
Period size: 96 Copynumber: 2.1 Consensus size: 97
38072995 TTTAAAAAAT
* * **
38073005 TAAATTAGGGTTTAGGGTTACTTGAGTAATTTAATTAAAAATTATTTA-AAAATCAGATAAGGGT
1 TAAATTAGGGTTCAGGGTCACTTGAGTAAACTAATTAAAAATT-TTTATAAAATCAGATAAGGGT
*
38073069 TTAGAG-TTAAGGGTTTTTAAGGAAAAA-TCAAA
65 TTAGAGTTTAA-GATTTTTAAGGAAAAACTCAAA
* ** ** *
38073101 TAAACTAGGGTTCAGGGTCACTTGAGTAAACTAATTATCAATTTTTATAAAATTTGATTAGGGTT
1 TAAATTAGGGTTCAGGGTCACTTGAGTAAACTAATTAAAAATTTTTATAAAATCAGATAAGGGTT
* *
38073166 TAGGGTTTAAGATTTTTAAGTAAAAACTCAAA
66 TAGAGTTTAAGATTTTTAAGGAAAAACTCAAA
38073198 TAAATTAGGGTT
1 TAAATTAGGGTT
38073210 TGGGGTTTAG
Statistics
Matches: 92, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
95 4 0.04
96 68 0.74
97 20 0.22
ACGTcount: A:0.39, C:0.05, G:0.19, T:0.37
Consensus pattern (97 bp):
TAAATTAGGGTTCAGGGTCACTTGAGTAAACTAATTAAAAATTTTTATAAAATCAGATAAGGGTT
TAGAGTTTAAGATTTTTAAGGAAAAACTCAAA
Found at i:38073479 original size:126 final size:126
Alignment explanation
Indices: 38073249--38073503 Score: 422
Period size: 126 Copynumber: 2.0 Consensus size: 126
38073239 TTGTTAATTT
* *
38073249 AAAGAAGCTCCTAGGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
* *
38073314 GTTTCTGAACAAATAGTGTCAAAAACGCTTTAAGAAGGATTCTTTGTCAGC-AGAAGTACTG
66 GTTTCTGAACAAATAGTGTCAAAAACGCTTTAAGAAGGATGCTTTGCCA-CTAGAAGTACTG
* *
38073375 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTTGCTTTTGAAAAAATAATTTCGAGTAGAC
1 AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
* *
38073440 GTTTCTGAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGCCACTAGAAGTACTG
66 GTTTCTGAACAAATAGTGTCAAAAACGCTTTAAGAAGGATGCTTTGCCACTAGAAGTACTG
38073501 AAA
1 AAA
38073504 CGCTTTTGCT
Statistics
Matches: 120, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
125 1 0.01
126 119 0.99
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (126 bp):
AAAGAAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGAC
GTTTCTGAACAAATAGTGTCAAAAACGCTTTAAGAAGGATGCTTTGCCACTAGAAGTACTG
Found at i:38073585 original size:108 final size:108
Alignment explanation
Indices: 38073396--38073611 Score: 380
Period size: 108 Copynumber: 2.0 Consensus size: 108
38073386 CACGTGGACG
* *
38073396 CGCTTTTGCTACAGTTGCTTTTGAAAAAATAATTTCGAGTAGACGTTTCTGAGCAAATAGTGTCA
1 CGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGACGTTTCTGAGCAAATAGTGTCA
38073461 AAAACGCTTTAAGCAGGATGCTTTGCCA-CTAGAAGTACTGAAA
66 AAAACGCTTTAAGCAGGATGCTTTGCCAGC-AGAAGTACTGAAA
*
38073504 CGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGATGTTTCTGAGCAAATAGTGTCA
1 CGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGACGTTTCTGAGCAAATAGTGTCA
*
38073569 AAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTGAAA
66 AAAACGCTTTAAGCAGGATGCTTTGCCAGCAGAAGTACTGAAA
38073612 GAAGCTCCCA
Statistics
Matches: 103, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
108 102 0.99
109 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (108 bp):
CGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGACGTTTCTGAGCAAATAGTGTCA
AAAACGCTTTAAGCAGGATGCTTTGCCAGCAGAAGTACTGAAA
Found at i:38076869 original size:35 final size:34
Alignment explanation
Indices: 38076830--38076919 Score: 101
Period size: 34 Copynumber: 2.6 Consensus size: 34
38076820 GTAAAATAAT
* * *
38076830 TTTTATTATATTAAA-AATGTATAAGTAAATTTCTA
1 TTTTATTATATGAAATAATATAGAAG--AATTTCTA
*
38076865 TTTTAGTATATGAAATAATATAGAAGAATTTCTA
1 TTTTATTATATGAAATAATATAGAAGAATTTCTA
* *
38076899 TTTTATTACATCAAATAATAT
1 TTTTATTATATGAAATAATAT
38076920 CAAAATATTC
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
34 26 0.55
35 13 0.28
36 8 0.17
ACGTcount: A:0.43, C:0.04, G:0.07, T:0.46
Consensus pattern (34 bp):
TTTTATTATATGAAATAATATAGAAGAATTTCTA
Found at i:38077358 original size:18 final size:18
Alignment explanation
Indices: 38077332--38077374 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
38077322 GGGCTAGAAA
* * *
38077332 AGGAGACATATAAGGGTT
1 AGGATACATAAAAGGGCT
38077350 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
38077368 AGGATAC
1 AGGATAC
38077375 GCACCTGACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.42, C:0.09, G:0.30, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:38078046 original size:13 final size:13
Alignment explanation
Indices: 38078028--38078056 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
38078018 AAATACGGGT
38078028 TATACCAATCGAC
1 TATACCAATCGAC
38078041 TATACCAATCGAC
1 TATACCAATCGAC
38078054 TAT
1 TAT
38078057 CTCATGAAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.38, C:0.28, G:0.07, T:0.28
Consensus pattern (13 bp):
TATACCAATCGAC
Found at i:38078446 original size:15 final size:15
Alignment explanation
Indices: 38078426--38078460 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
38078416 TACATTTGGT
38078426 GCTAGAACAATTATG
1 GCTAGAACAATTATG
*
38078441 GCTAG-ATAATTATG
1 GCTAGAACAATTATG
38078455 GCTAGA
1 GCTAGA
38078461 TATTATTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (15 bp):
GCTAGAACAATTATG
Found at i:38078453 original size:14 final size:14
Alignment explanation
Indices: 38078434--38078466 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
38078424 GTGCTAGAAC
38078434 AATTATGGCTAGAT
1 AATTATGGCTAGAT
38078448 AATTATGGCTAGAT
1 AATTATGGCTAGAT
38078462 -ATTAT
1 AATTAT
38078467 TTAATTAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.36, C:0.06, G:0.18, T:0.39
Consensus pattern (14 bp):
AATTATGGCTAGAT
Found at i:38079095 original size:25 final size:25
Alignment explanation
Indices: 38079065--38079147 Score: 123
Period size: 25 Copynumber: 3.3 Consensus size: 25
38079055 ATGTGTTAAA
** *
38079065 CAGAGAGCACTGACATGCTATATAT
1 CAGAGAGCACCAACGTGCTATATAT
38079090 CAGAGAGCACCAACGTGCTATATAT
1 CAGAGAGCACCAACGTGCTATATAT
38079115 CAGAGAGCACCAACGTGCTA-ATAAT
1 CAGAGAGCACCAACGTGCTATAT-AT
38079140 CAGAGAGC
1 CAGAGAGC
38079148 GCGCTAAAGT
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
24 2 0.04
25 52 0.96
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (25 bp):
CAGAGAGCACCAACGTGCTATATAT
Found at i:38079726 original size:17 final size:17
Alignment explanation
Indices: 38079704--38079736 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
38079694 TATTTAATAA
38079704 AAATAAACATATATGAC
1 AAATAAACATATATGAC
38079721 AAATAAACATATATGA
1 AAATAAACATATATGA
38079737 TATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.61, C:0.09, G:0.06, T:0.24
Consensus pattern (17 bp):
AAATAAACATATATGAC
Found at i:38085983 original size:104 final size:105
Alignment explanation
Indices: 38085843--38086049 Score: 364
Period size: 104 Copynumber: 2.0 Consensus size: 105
38085833 TACACTTTAG
*
38085843 TTCCTAATACATGGGAACATAACTGAACTATCTATGTACATGCCATTTTAATTCAAAATATTGTA
1 TTCCTAACACATGGGAACATAACTGAACTATCTATGTACATGCCATTTTAATTCAAAATATTGTA
*
38085908 CCTACTTTTGAAGCTCTTGAGGATGTGATGAGATGAGAGA
66 CCTACTTTTGAAGCTCCTGAGGATGTGATGAGATGAGAGA
*
38085948 TTCCTAACACAT-GGAAGCA-AACTGAACTGTCTATGTACATGCCATTTTAATTCAAAATATTGT
1 TTCCTAACACATGGGAA-CATAACTGAACTATCTATGTACATGCCATTTTAATTCAAAATATTGT
38086011 ACCTACTTTTGAAGCTCCTGAGGATGTGATGAGATGAGA
65 ACCTACTTTTGAAGCTCCTGAGGATGTGATGAGATGAGA
38086050 TGAGAGATCT
Statistics
Matches: 98, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
104 85 0.87
105 13 0.13
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32
Consensus pattern (105 bp):
TTCCTAACACATGGGAACATAACTGAACTATCTATGTACATGCCATTTTAATTCAAAATATTGTA
CCTACTTTTGAAGCTCCTGAGGATGTGATGAGATGAGAGA
Found at i:38086424 original size:25 final size:25
Alignment explanation
Indices: 38086387--38086466 Score: 108
Period size: 25 Copynumber: 3.2 Consensus size: 25
38086377 TACAGAACAT
**
38086387 AGAGCACTGACGTGCT-ATATATCAG
1 AGAGCACCAACGTGCTAATA-ATCAG
*
38086412 AGAGCACCAACGTGCTAATAATTAG
1 AGAGCACCAACGTGCTAATAATCAG
*
38086437 AGAGCACCAATGTGCTAATAATCAG
1 AGAGCACCAACGTGCTAATAATCAG
38086462 AGAGC
1 AGAGC
38086467 GCGCTAAAGT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
25 46 0.94
26 3 0.06
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.20
Consensus pattern (25 bp):
AGAGCACCAACGTGCTAATAATCAG
Found at i:38087605 original size:5 final size:5
Alignment explanation
Indices: 38087595--38087652 Score: 50
Period size: 5 Copynumber: 11.6 Consensus size: 5
38087585 TGTATATATA
* *
38087595 ATAAT ATAAT ATAAT ATAAT A-AA- ATAAC ATACTT ATTAAGT A-AAT
1 ATAAT ATAAT ATAAT ATAAT ATAAT ATAAT ATA-AT A-TAA-T ATAAT
38087640 ATAAT ATAAT ATA
1 ATAAT ATAAT ATA
38087653 TATTTTAAAT
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
3 1 0.02
4 6 0.14
5 32 0.73
6 1 0.02
7 4 0.09
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (5 bp):
ATAAT
Found at i:38088965 original size:14 final size:15
Alignment explanation
Indices: 38088936--38088965 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
38088926 TTTACGATTT
38088936 AAAAAAAATTCAAAA
1 AAAAAAAATTCAAAA
*
38088951 AAAAAAAATTTAAAA
1 AAAAAAAATTCAAAA
38088966 CTTTTTTAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (15 bp):
AAAAAAAATTCAAAA
Found at i:38090860 original size:20 final size:21
Alignment explanation
Indices: 38090811--38090860 Score: 52
Period size: 20 Copynumber: 2.5 Consensus size: 21
38090801 TTTGCTCCAT
*
38090811 TTTC-TCTTCTCTTCTCTTTC
1 TTTCGTCTTCTCCTCTCTTTC
*
38090831 TTTCGT-TTCTCCTGTCTTTC
1 TTTCGTCTTCTCCTCTCTTTC
*
38090851 -TTCTTCTTCT
1 TTTCGTCTTCT
38090861 TCTTTTTTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 4 0.16
20 20 0.80
21 1 0.04
ACGTcount: A:0.00, C:0.32, G:0.04, T:0.64
Consensus pattern (21 bp):
TTTCGTCTTCTCCTCTCTTTC
Found at i:38093993 original size:115 final size:118
Alignment explanation
Indices: 38093729--38094131 Score: 503
Period size: 126 Copynumber: 3.3 Consensus size: 118
38093719 AATTTAAAAT
* * *
38093729 AGCTCCCACGTGGACGC-TCTTTTGTTACAGTAACTCTTGAAAAAATAATTTCGAGAAGACGTTT
1 AGCTCCCACGTGGACGCGT-TTTTGCTACAGTAGCTCTTG--AAAATAA--TCGAG--TA--TTT
38093793 CTGAGCAAATAGTGTCAAAAACACTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGA
57 CTGAGCAAATAGTGTCAAAAACACTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGA
38093855 AGCTCCCACGTGGACGCGTTTTTGCTACAGTAGCTCTTCG-AAATAGA-C-A-T-TTTCTGAGCA
1 AGCTCCCACGTGGACGCGTTTTTGCTACAGTAGCTCTT-GAAAATA-ATCGAGTATTTCTGAGCA
38093915 AATAGTGTCAAAAACACTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGA
64 AATAGTGTCAAAAACACTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGA
* *
38093970 AGCTCCCACGTGGACACGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTAGACATTTC
1 AGCTCCCACGTGGACGCGTTTTTGCTACAGTAGCTCTTG--AAAATAA--TCGAGT----ATTTC
* * *
38094035 TGAGCAAATAGAGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGTAAAAGTACTGAAAGA
58 TGAGCAAATAGTGTCAAAAACACTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGA
**
38094096 AGCTCCTTCGTGGACGCGTTTTTGCTACAGTAGCTC
1 AGCTCCCACGTGGACGCGTTTTTGCTACAGTAGCTC
38094132 CTGTTTGGTC
Statistics
Matches: 249, Mismatches: 12, Indels: 32
0.85 0.04 0.11
Matches are distributed among these distances:
114 1 0.00
115 101 0.41
116 1 0.00
117 5 0.02
119 1 0.00
120 1 0.00
121 2 0.01
122 1 0.00
124 5 0.02
125 1 0.00
126 128 0.51
127 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (118 bp):
AGCTCCCACGTGGACGCGTTTTTGCTACAGTAGCTCTTGAAAATAATCGAGTATTTCTGAGCAAA
TAGTGTCAAAAACACTTTAAGCAGGATGCTTTGTCAGCAAAAGTACTGAAAGA
Found at i:38098404 original size:7 final size:7
Alignment explanation
Indices: 38098394--38098418 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
38098384 CATAATACAT
38098394 AATACTA
1 AATACTA
38098401 AATACTA
1 AATACTA
38098408 AATACTA
1 AATACTA
38098415 AATA
1 AATA
38098419 GCAATTGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:38099609 original size:11 final size:11
Alignment explanation
Indices: 38099587--38099645 Score: 59
Period size: 11 Copynumber: 5.4 Consensus size: 11
38099577 GCTTTTTTTA
*
38099587 AGAGGAACTTG
1 AGAGGAATTTG
*
38099598 AAAGGAATTTG
1 AGAGGAATTTG
38099609 AGA-GAATATTGG
1 AGAGGAAT-TT-G
38099621 AGAGGAATTTG
1 AGAGGAATTTG
*
38099632 AGA-GAAATTG
1 AGAGGAATTTG
38099642 AGAG
1 AGAG
38099646 AAATGATTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
10 13 0.32
11 17 0.43
12 6 0.15
13 4 0.10
ACGTcount: A:0.42, C:0.02, G:0.34, T:0.22
Consensus pattern (11 bp):
AGAGGAATTTG
Found at i:38099626 original size:23 final size:23
Alignment explanation
Indices: 38099600--38099646 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 23
38099590 GGAACTTGAA
38099600 AGGAATTTGAGAGAATATTG-GAG
1 AGGAATTTGAGAGAA-ATTGAGAG
38099623 AGGAATTTGAGAGAAATTGAGAG
1 AGGAATTTGAGAGAAATTGAGAG
38099646 A
1 A
38099647 AATGATTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 4 0.17
23 19 0.83
ACGTcount: A:0.43, C:0.00, G:0.34, T:0.23
Consensus pattern (23 bp):
AGGAATTTGAGAGAAATTGAGAG
Found at i:38099642 original size:10 final size:10
Alignment explanation
Indices: 38099606--38099649 Score: 52
Period size: 10 Copynumber: 4.1 Consensus size: 10
38099596 TGAAAGGAAT
38099606 TTGAGAGAATA
1 TTGAGAGAA-A
*
38099617 TTGGAGAGGAAT
1 TT-GAGA-GAAA
38099629 TTGAGAGAAA
1 TTGAGAGAAA
38099639 TTGAGAGAAA
1 TTGAGAGAAA
38099649 T
1 T
38099650 GATTTAGGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
10 14 0.48
11 6 0.21
12 6 0.21
13 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.32, T:0.25
Consensus pattern (10 bp):
TTGAGAGAAA
Found at i:38106693 original size:5 final size:5
Alignment explanation
Indices: 38106683--38106709 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
38106673 GAACCCAAAA
38106683 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
38106710 GGCCTCCTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:38107200 original size:2 final size:2
Alignment explanation
Indices: 38107193--38107221 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
38107183 TTGTGGCCAA
38107193 AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
38107222 TAGTCATCAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:38127379 original size:186 final size:186
Alignment explanation
Indices: 38127041--38127379 Score: 469
Period size: 186 Copynumber: 1.8 Consensus size: 186
38127031 TTTTGTATCA
* *
38127041 ATATTGATCTAATGATTAACTGATTGAAATGTGATGATATATGATAGCAATTGATAGTGTTTGAT
1 ATATTGATCTAATGATTAAATGATTGAAATGTGATGATATATGATAGCAATTGATAGTATTTGAT
** *
38127106 ATTTCTAAAATATGTTATAATAATAAATGTTTTATTAACTAATGTTGGAAATAATTTAGAATATA
66 ATTTCTAAAATATGTTATAATAATAAATGTCCTATTAACTAATATTGGAAATAATTTAGAATATA
*
38127171 GTCGTCATGTCATAAAGTTTATTTATTTTGAAAATTCATGATATTATTTTGAATTG
131 GTCGACATGTCATAAAGTTTATTTATTTTGAAAATTCATGATATTATTTTGAATTG
*
38127227 ATATTGATGC-AATGGTTAAATGATTGAAACT-TGATGATATATGATAGCAATTGATAGTATTTG
1 ATATTGAT-CTAATGATTAAATGATTGAAA-TGTGATGATATATGATAGCAATTGATAGTATTTG
* ** *
38127290 ATGTTTCTACGATATGTTATAATAATAAATGTCCTATTAAAC-AATATT-G-AA-AATTT-GAGT
64 ATATTTCTAAAATATGTTATAATAATAAATGTCCTATT-AACTAATATTGGAAATAATTTAGAAT
* *
38127350 ATAGTTGACATGTCATAGAA-TTTGTTTATT
128 ATAGTCGACATGTCATA-AAGTTTATTTATT
38127380 GTGATGGATA
Statistics
Matches: 136, Mismatches: 13, Indels: 12
0.84 0.08 0.07
Matches are distributed among these distances:
182 27 0.20
183 7 0.05
184 2 0.01
185 1 0.01
186 94 0.69
187 5 0.04
ACGTcount: A:0.37, C:0.06, G:0.15, T:0.42
Consensus pattern (186 bp):
ATATTGATCTAATGATTAAATGATTGAAATGTGATGATATATGATAGCAATTGATAGTATTTGAT
ATTTCTAAAATATGTTATAATAATAAATGTCCTATTAACTAATATTGGAAATAATTTAGAATATA
GTCGACATGTCATAAAGTTTATTTATTTTGAAAATTCATGATATTATTTTGAATTG
Found at i:38134442 original size:16 final size:15
Alignment explanation
Indices: 38134420--38134459 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
38134410 NNATTATTTA
38134420 AAAAAAAAGCTACATAT
1 AAAAAAAA-CTACAT-T
*
38134437 AAAAAAAATTACATT
1 AAAAAAAACTACATT
38134452 AAAAAAAA
1 AAAAAAAA
38134460 TATGCATATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 9 0.41
16 5 0.23
17 8 0.36
ACGTcount: A:0.72, C:0.07, G:0.03, T:0.17
Consensus pattern (15 bp):
AAAAAAAACTACATT
Found at i:38134554 original size:25 final size:26
Alignment explanation
Indices: 38134504--38134558 Score: 69
Period size: 28 Copynumber: 2.1 Consensus size: 26
38134494 ATATATATTT
38134504 AAAAAAATTAAATATGAAAAATAATAA
1 AAAAAAATTAAATA-GAAAAATAATAA
*
38134531 AAAAATAATTAAATA-AAGAA-AATAA
1 AAAAA-AATTAAATAGAAAAATAATAA
38134556 AAA
1 AAA
38134559 TGGACTAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 8 0.31
26 4 0.15
27 5 0.19
28 9 0.35
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (26 bp):
AAAAAAATTAAATAGAAAAATAATAA
Found at i:38137817 original size:183 final size:184
Alignment explanation
Indices: 38137509--38137877 Score: 731
Period size: 183 Copynumber: 2.0 Consensus size: 184
38137499 ATATTTGAAA
38137509 ATTCTTAAAAGTAAACAAGATACTTTAGTATGATAAATTTGAATTAGTAATTTACTTGTTTAGGT
1 ATTCTTAAAAGTAAACAAGATACTTTAGTATGATAAATTTGAATTAGTAATTTACTTGTTTAGGT
38137574 CATAAAATTTATTATTTTGGAAAAATTTTAAATTTATAAAATTTAACCATTTTTTATACTATTTA
66 CATAAAATTTATTATTTTGGAAAAATTTTAAATTTATAAAATTTAACCATTTTTTATACTATTTA
38137639 ATTATTTTTATTTTATTTTATTTTATGAATCTTATAG-TTTTTTTAAGAATTTT
131 ATTATTTTTATTTTATTTTATTTTATGAATCTTATAGTTTTTTTTAAGAATTTT
38137692 ATTCTTAAAAGTAAACAAGATACTTTAGTATGATAAATTTGAATTAGTAATTTACTTGTTTAGGT
1 ATTCTTAAAAGTAAACAAGATACTTTAGTATGATAAATTTGAATTAGTAATTTACTTGTTTAGGT
38137757 CATAAAATTTATTATTTTGGAAAAATTTTAAATTTATAAAATTTAACCATTTTTTATACTATTTA
66 CATAAAATTTATTATTTTGGAAAAATTTTAAATTTATAAAATTTAACCATTTTTTATACTATTTA
38137822 ATTATTTTTATTTTATTTTATTTTATGAATCTTATAGTTTTTTTTAAGAATTTT
131 ATTATTTTTATTTTATTTTATTTTATGAATCTTATAGTTTTTTTTAAGAATTTT
38137876 AT
1 AT
38137878 GAAAATTTGG
Statistics
Matches: 185, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
183 167 0.90
184 18 0.10
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (184 bp):
ATTCTTAAAAGTAAACAAGATACTTTAGTATGATAAATTTGAATTAGTAATTTACTTGTTTAGGT
CATAAAATTTATTATTTTGGAAAAATTTTAAATTTATAAAATTTAACCATTTTTTATACTATTTA
ATTATTTTTATTTTATTTTATTTTATGAATCTTATAGTTTTTTTTAAGAATTTT
Found at i:38137866 original size:21 final size:22
Alignment explanation
Indices: 38137837--38137877 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
38137827 TTTTATTTTA
*
38137837 TTTTATTTTATGAATCTTATAG
1 TTTTATTTTAAGAATCTTATAG
*
38137859 TTTT-TTTTAAGAATTTTAT
1 TTTTATTTTAAGAATCTTAT
38137878 GAAAATTTGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (22 bp):
TTTTATTTTAAGAATCTTATAG
Found at i:38138343 original size:13 final size:13
Alignment explanation
Indices: 38138325--38138388 Score: 78
Period size: 13 Copynumber: 4.9 Consensus size: 13
38138315 AGTTCTTCAT
38138325 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
38138338 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
38138351 TGC-TGTGAAAAAG
1 TGCTTTTG-AAAAG
38138364 TGCTTTT-AAGAAG
1 TGCTTTTGAA-AAG
38138377 TGCTTTTGAAAA
1 TGCTTTTGAAAA
38138389 ATTTGAATGT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
12 5 0.12
13 34 0.79
14 4 0.09
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:38138362 original size:26 final size:27
Alignment explanation
Indices: 38138325--38138389 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 27
38138315 AGTTCTTCAT
* *
38138325 TGCTTTTG-AAAAGTGCTTTTGAGAAG
1 TGCTTGTGAAAAAGTGCTTTTAAGAAG
38138351 TGC-TGTGAAAAAGTGCTTTTAAGAAG
1 TGCTTGTGAAAAAGTGCTTTTAAGAAG
*
38138377 TGCTTTTGAAAAA
1 TGCTTGTGAAAAA
38138390 TTTGAATGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
25 3 0.09
26 23 0.68
27 8 0.24
ACGTcount: A:0.32, C:0.08, G:0.25, T:0.35
Consensus pattern (27 bp):
TGCTTGTGAAAAAGTGCTTTTAAGAAG
Found at i:38140037 original size:297 final size:297
Alignment explanation
Indices: 38139496--38140088 Score: 1123
Period size: 297 Copynumber: 2.0 Consensus size: 297
38139486 CAACCTCTGG
*
38139496 ATTTTTGGAGCTTTACTGACCTTATTGCCTGTAAAACCAGAAAAGTTATCAGCAAGTAATAGTTA
1 ATTTTTGGAGCTTTACTGACCTTATTGCCTGCAAAACCAGAAAAGTTATCAGCAAGTAATAGTTA
38139561 CAATCAAGAAATCATCATTTTCACCAAGCCTGTATAATTCTAGCTGAAACCCAAAATCCAATATC
66 CAATCAAGAAATCATCATTTTCACCAAGCCTGTATAATTCTAGCTGAAACCCAAAATCCAATATC
38139626 CTACTTCCAGCATACACCACGCATGAGTAAATGGTAAAGCAAAACATGTTTCCAGGAATAGAAGT
131 CTACTTCCAGCATACACCACGCATGAGTAAATGGTAAAGCAAAACATGTTTCCAGGAATAGAAGT
* *
38139691 AAATAGATTGTTACAGTGTACAAGCTGCAGTGTTTGCAAAAGGCAATCATGAAAATATTGGTCAA
196 AAACAGATTGTTACAGTGTACAAGCTGCAGTGTTTGCAAAAGCCAATCATGAAAATATTGGTCAA
38139756 CAGATTGTTGCAGCACATCAAAATCTTGTTGTAAAAT
261 CAGATTGTTGCAGCACATCAAAATCTTGTTGTAAAAT
38139793 ATTTTTGGAGCTTTACTGACCTTATTGCCTGCAAAACCAGAAAAGTTATCAGCAAGTAATAGTTA
1 ATTTTTGGAGCTTTACTGACCTTATTGCCTGCAAAACCAGAAAAGTTATCAGCAAGTAATAGTTA
*
38139858 CAATCAAGAAATCATCATTTTCACCAAGCCTGTATAATTCTATCTGAAACCCAAAATCCAATATC
66 CAATCAAGAAATCATCATTTTCACCAAGCCTGTATAATTCTAGCTGAAACCCAAAATCCAATATC
*
38139923 CTACTTCCAGCATACACCACGCATGAGTAAATGGTAAAGCAAAACATGTTTCCAGGAATAGTAGT
131 CTACTTCCAGCATACACCACGCATGAGTAAATGGTAAAGCAAAACATGTTTCCAGGAATAGAAGT
* *
38139988 AAACAGATTGTTACAGTGTACAAGCTGTAGTGTTTGCAGAAGCCAATCATGAAAATATTGGTCAA
196 AAACAGATTGTTACAGTGTACAAGCTGCAGTGTTTGCAAAAGCCAATCATGAAAATATTGGTCAA
38140053 CAGATTGTTGCAGCACATCAAAATCTTGTTGTAAAA
261 CAGATTGTTGCAGCACATCAAAATCTTGTTGTAAAA
38140089 GATTGTTGAT
Statistics
Matches: 289, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
297 289 1.00
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (297 bp):
ATTTTTGGAGCTTTACTGACCTTATTGCCTGCAAAACCAGAAAAGTTATCAGCAAGTAATAGTTA
CAATCAAGAAATCATCATTTTCACCAAGCCTGTATAATTCTAGCTGAAACCCAAAATCCAATATC
CTACTTCCAGCATACACCACGCATGAGTAAATGGTAAAGCAAAACATGTTTCCAGGAATAGAAGT
AAACAGATTGTTACAGTGTACAAGCTGCAGTGTTTGCAAAAGCCAATCATGAAAATATTGGTCAA
CAGATTGTTGCAGCACATCAAAATCTTGTTGTAAAAT
Found at i:38144831 original size:27 final size:27
Alignment explanation
Indices: 38144801--38144852 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
38144791 AAGATAAGTA
*
38144801 GAGAAAGAAAGATTGAAACAAGAAAGC
1 GAGAAAGAAAGATTAAAACAAGAAAGC
*
38144828 GAGAAAGGAAGATTAAAACAAGAAA
1 GAGAAAGAAAGATTAAAACAAGAAA
38144853 AGAAACCATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.62, C:0.06, G:0.25, T:0.08
Consensus pattern (27 bp):
GAGAAAGAAAGATTAAAACAAGAAAGC
Found at i:38147606 original size:20 final size:20
Alignment explanation
Indices: 38147583--38147626 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
38147573 TATTTTTCAT
38147583 AAAAATAATTAA-AAATAAGA
1 AAAAATAA-TAACAAATAAGA
* *
38147603 AAAAATTATAACAAATCAGA
1 AAAAATAATAACAAATAAGA
38147623 AAAA
1 AAAA
38147627 TTATAAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.73, C:0.05, G:0.05, T:0.18
Consensus pattern (20 bp):
AAAAATAATAACAAATAAGA
Found at i:38147656 original size:14 final size:15
Alignment explanation
Indices: 38147632--38147661 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
38147622 AAAAATTATA
38147632 AAAAGTATTAAAAAT
1 AAAAGTATTAAAAAT
38147647 AAAA-TATTAAAAAT
1 AAAAGTATTAAAAAT
38147661 A
1 A
38147662 TATTGAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (15 bp):
AAAAGTATTAAAAAT
Found at i:38147778 original size:21 final size:19
Alignment explanation
Indices: 38147754--38147800 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
38147744 CATAAAATTA
*
38147754 ATAAAACATATTTAGAATTTT
1 ATAAAACATA-TTA-AATTCT
38147775 ATAAAAACATATTAAATTCT
1 AT-AAAACATATTAAATTCT
38147795 ATAAAA
1 ATAAAA
38147801 ATCATAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 4 0.17
20 7 0.29
21 5 0.21
22 8 0.33
ACGTcount: A:0.55, C:0.06, G:0.02, T:0.36
Consensus pattern (19 bp):
ATAAAACATATTAAATTCT
Found at i:38147806 original size:21 final size:22
Alignment explanation
Indices: 38147756--38147806 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 22
38147746 TAAAATTAAT
*
38147756 AAAACATATTTAGAATTTTATA
1 AAAACATATTTAGAATTCTATA
38147778 AAAACATA-TTA-AATTCTATA
1 AAAACATATTTAGAATTCTATA
38147798 AAAATCATA
1 AAAA-CATA
38147807 AAAAGTATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 12 0.44
21 7 0.26
22 8 0.30
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.35
Consensus pattern (22 bp):
AAAACATATTTAGAATTCTATA
Found at i:38148648 original size:18 final size:19
Alignment explanation
Indices: 38148615--38148650 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
38148605 ATCATTTCAG
38148615 TATAATATTTAACTTAAAA
1 TATAATATTTAACTTAAAA
*
38148634 TATAA-ATTTATCTTAAA
1 TATAATATTTAACTTAAA
38148651 TTTCAACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (19 bp):
TATAATATTTAACTTAAAA
Found at i:38164568 original size:16 final size:16
Alignment explanation
Indices: 38164540--38164585 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
38164530 AATAATAGCC
38164540 TTATATATAAAATATA
1 TTATATATAAAATATA
38164556 TTATCATAT-AAATAT-
1 TTAT-ATATAAAATATA
38164571 TTGATATA-AAAATAT
1 TT-ATATATAAAATAT
38164586 CCAAAAGGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
15 11 0.41
16 12 0.44
17 4 0.15
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (16 bp):
TTATATATAAAATATA
Found at i:38165450 original size:20 final size:20
Alignment explanation
Indices: 38165414--38165452 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
38165404 AATTTGGTGC
*
38165414 CAAAGAAGAAAACAAAGAAT
1 CAAAGAAGAAAAAAAAGAAT
38165434 CAAAGAA-AATAAAAAAGAA
1 CAAAGAAGAA-AAAAAAGAA
38165453 AGAAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 2 0.12
20 15 0.88
ACGTcount: A:0.74, C:0.08, G:0.13, T:0.05
Consensus pattern (20 bp):
CAAAGAAGAAAAAAAAGAAT
Found at i:38165653 original size:22 final size:22
Alignment explanation
Indices: 38165628--38165671 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
38165618 TCTGTTCTCC
38165628 TTTTCGCTATTT-TTGCTTGTTT
1 TTTTCGCT-TTTGTTGCTTGTTT
*
38165650 TTTTCTCTTTTGTTGCTTGTTT
1 TTTTCGCTTTTGTTGCTTGTTT
38165672 GTCGTATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.02, C:0.14, G:0.14, T:0.70
Consensus pattern (22 bp):
TTTTCGCTTTTGTTGCTTGTTT
Found at i:38165742 original size:18 final size:18
Alignment explanation
Indices: 38165721--38165755 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
38165711 GGGCGCGCAC
*
38165721 GTACGGAGGCTCGCGTGA
1 GTACAGAGGCTCGCGTGA
*
38165739 GTACAGAGGCTGGCGTG
1 GTACAGAGGCTCGCGTG
38165756 GAGCGGCTAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.17, C:0.20, G:0.46, T:0.17
Consensus pattern (18 bp):
GTACAGAGGCTCGCGTGA
Found at i:38170532 original size:30 final size:30
Alignment explanation
Indices: 38170496--38170557 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
38170486 TGATACCAAA
38170496 TTGTAGAAAATTATTCTCAATATAAAATTG
1 TTGTAGAAAATTATTCTCAATATAAAATTG
* *
38170526 TTGTAGAAAATTGTTCTCAATGTAAAATTG
1 TTGTAGAAAATTATTCTCAATATAAAATTG
38170556 TT
1 TT
38170558 CACATTCATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.39, C:0.06, G:0.13, T:0.42
Consensus pattern (30 bp):
TTGTAGAAAATTATTCTCAATATAAAATTG
Found at i:38170554 original size:17 final size:17
Alignment explanation
Indices: 38170502--38170558 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 17
38170492 CAAATTGTAG
* *
38170502 AAAATTATTCTCAATAT
1 AAAATTGTTCTCAATGT
*
38170519 AAAATTGTTGT--A-G-
1 AAAATTGTTCTCAATGT
38170532 AAAATTGTTCTCAATGT
1 AAAATTGTTCTCAATGT
38170549 AAAATTGTTC
1 AAAATTGTTC
38170559 ACATTCATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
13 10 0.31
15 2 0.06
16 1 0.03
17 19 0.59
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (17 bp):
AAAATTGTTCTCAATGT
Found at i:38177687 original size:14 final size:14
Alignment explanation
Indices: 38177668--38177695 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
38177658 AATCAACTAG
38177668 ATTTGAAGATCCAT
1 ATTTGAAGATCCAT
38177682 ATTTGAAGATCCAT
1 ATTTGAAGATCCAT
38177696 CTTGTGGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
ATTTGAAGATCCAT
Found at i:38181593 original size:2 final size:2
Alignment explanation
Indices: 38181586--38181610 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
38181576 AGACAAAGGC
38181586 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
38181611 GTTATCACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:38185090 original size:111 final size:112
Alignment explanation
Indices: 38184970--38185192 Score: 439
Period size: 111 Copynumber: 2.0 Consensus size: 112
38184960 ACTTAATATT
38184970 AAAAAATTAAGTTAATTTTATTTTTAAAAACAATATTCAAAATCAATTTTCTATTTACTTTTGTT
1 AAAAAATTAAGTTAATTTTATTTTTAAAAACAATATTCAAAATCAATTTTCTATTTACTTTTGTT
38185035 AATAAAACTAAATGTTCAATTTATTATATATAA-TTTTATCCAAAAC
66 AATAAAACTAAATGTTCAATTTATTATATATAATTTTTATCCAAAAC
38185081 AAAAAATTAAGTTAATTTTATTTTTAAAAACAATATTCAAAATCAATTTTCTATTTACTTTTGTT
1 AAAAAATTAAGTTAATTTTATTTTTAAAAACAATATTCAAAATCAATTTTCTATTTACTTTTGTT
38185146 AATAAAACTAAATGTTCAATTTATTATATATAATTTTTATCCAAAAC
66 AATAAAACTAAATGTTCAATTTATTATATATAATTTTTATCCAAAAC
38185193 TCTTCAAAAT
Statistics
Matches: 111, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
111 98 0.88
112 13 0.12
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (112 bp):
AAAAAATTAAGTTAATTTTATTTTTAAAAACAATATTCAAAATCAATTTTCTATTTACTTTTGTT
AATAAAACTAAATGTTCAATTTATTATATATAATTTTTATCCAAAAC
Found at i:38186403 original size:17 final size:17
Alignment explanation
Indices: 38186381--38186416 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
38186371 ATTTTTTTTC
38186381 ATTTT-AAAAATACAATT
1 ATTTTAAAAAATA-AATT
38186398 ATTTTAAAAAATAAATT
1 ATTTTAAAAAATAAATT
38186415 AT
1 AT
38186417 AATATATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 11 0.61
18 7 0.39
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
ATTTTAAAAAATAAATT
Found at i:38188319 original size:10 final size:11
Alignment explanation
Indices: 38188294--38188322 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
38188284 TTTAAAAATA
38188294 AAAAATATTTT
1 AAAAATATTTT
38188305 AAAAATATTTT
1 AAAAATATTTT
38188316 AAAAATA
1 AAAAATA
38188323 AAAAAATTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:38188337 original size:17 final size:17
Alignment explanation
Indices: 38188304--38188337 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
38188294 AAAAATATTT
* *
38188304 TAAAAATATTTTAAAAA
1 TAAAAAAATTTAAAAAA
38188321 TAAAAAAATTTAAAAAA
1 TAAAAAAATTTAAAAAA
38188338 ATATATATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (17 bp):
TAAAAAAATTTAAAAAA
Found at i:38188341 original size:29 final size:29
Alignment explanation
Indices: 38188281--38188337 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
38188271 ACCAAAAATT
*
38188281 TATTTTAAAAATAAAAAATATTTTAAAAA
1 TATTTTAAAAATAAAAAATATTTAAAAAA
38188310 TATTTTAAAAATAAAAAA-ATTTAAAAAA
1 TATTTTAAAAATAAAAAATATTTAAAAAA
38188338 ATATATATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 9 0.33
29 18 0.67
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (29 bp):
TATTTTAAAAATAAAAAATATTTAAAAAA
Found at i:38189277 original size:55 final size:55
Alignment explanation
Indices: 38189173--38189280 Score: 144
Period size: 55 Copynumber: 2.0 Consensus size: 55
38189163 AATGCGAAAG
* * * *
38189173 TCACATAATTGGGTGCTCAACCACCGGAATGAAATATACGGATTAGTGCATTGAA
1 TCACATAATTAGGTGCTCAACCACCAGAATGAAATATACGAATGAGTGCATTGAA
* * * *
38189228 TCACATCATTAGGTGCTCAACTACTAGAATGAAATATACGAATGGGTGCATTG
1 TCACATAATTAGGTGCTCAACCACCAGAATGAAATATACGAATGAGTGCATTG
38189281 GATCTGTCAT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
55 45 1.00
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.27
Consensus pattern (55 bp):
TCACATAATTAGGTGCTCAACCACCAGAATGAAATATACGAATGAGTGCATTGAA
Found at i:38192450 original size:48 final size:48
Alignment explanation
Indices: 38192398--38192542 Score: 149
Period size: 48 Copynumber: 3.1 Consensus size: 48
38192388 TAATACTAAA
38192398 TTATAATATACTCACAATGTAAATAAAAAATTATGTAATAAAATATAT
1 TTATAATATACTCACAATGTAAATAAAAAATTATGTAATAAAATATAT
* * * * ** * * * *
38192446 TTATAA-AAAATAGATAAAATAAATAAGAAA-TA-CTAAT--ACTA-AA
1 TTATAATATACT-CACAATGTAAATAAAAAATTATGTAATAAAATATAT
38192489 TTATAATATACTCACAATGTAAATAAAAAATTATGTAATAAAATATAT
1 TTATAATATACTCACAATGTAAATAAAAAATTATGTAATAAAATATAT
38192537 TTATAA
1 TTATAA
38192543 AAAATAGATA
Statistics
Matches: 70, Mismatches: 20, Indels: 14
0.67 0.19 0.13
Matches are distributed among these distances:
43 20 0.29
44 8 0.11
45 4 0.06
46 4 0.06
47 8 0.11
48 26 0.37
ACGTcount: A:0.57, C:0.06, G:0.04, T:0.33
Consensus pattern (48 bp):
TTATAATATACTCACAATGTAAATAAAAAATTATGTAATAAAATATAT
Found at i:38192524 original size:91 final size:92
Alignment explanation
Indices: 38192383--38192565 Score: 359
Period size: 91 Copynumber: 2.0 Consensus size: 92
38192373 ATTAAAACAC
38192383 AATACTAATACTAAATTATAATATACTCACAATGTAAATAAAAAATTATGTAATAAAATATATTT
1 AATACTAATACTAAATTATAATATACTCACAATGTAAATAAAAAATTATGTAATAAAATATATTT
38192448 ATAAAAAATAGATAAA-ATAAATAAGA
66 ATAAAAAATAGATAAATATAAATAAGA
38192474 AATACTAATACTAAATTATAATATACTCACAATGTAAATAAAAAATTATGTAATAAAATATATTT
1 AATACTAATACTAAATTATAATATACTCACAATGTAAATAAAAAATTATGTAATAAAATATATTT
38192539 ATAAAAAATAGATAAATATAAATAAGA
66 ATAAAAAATAGATAAATATAAATAAGA
38192566 TTTTAATTGA
Statistics
Matches: 91, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
91 81 0.89
92 10 0.11
ACGTcount: A:0.59, C:0.05, G:0.04, T:0.31
Consensus pattern (92 bp):
AATACTAATACTAAATTATAATATACTCACAATGTAAATAAAAAATTATGTAATAAAATATATTT
ATAAAAAATAGATAAATATAAATAAGA
Found at i:38192555 original size:43 final size:43
Alignment explanation
Indices: 38192417--38192556 Score: 126
Period size: 43 Copynumber: 3.1 Consensus size: 43
38192407 ACTCACAATG
38192417 TAAATAAAAAATTATGTAATAAAATATATTTATAAAAAATAGA
1 TAAATAAAAAATTATGTAATAAAATATATTTATAAAAAATAGA
* * * * *
38192460 TAAAATAAATAAGA-AATACTAATACTAAAT-TATAATATACTCACAAT-G-
1 T-AAATAAA-AA-ATTAT-GTAATA--AAATATAT-TTATA--AAAAATAGA
38192508 TAAATAAAAAATTATGTAATAAAATATATTTATAAAAAATAGA
1 TAAATAAAAAATTATGTAATAAAATATATTTATAAAAAATAGA
38192551 TAAATA
1 TAAATA
38192557 TAAATAAGAT
Statistics
Matches: 74, Mismatches: 10, Indels: 26
0.67 0.09 0.24
Matches are distributed among these distances:
41 4 0.05
42 1 0.01
43 15 0.20
44 10 0.14
45 10 0.14
46 10 0.14
47 10 0.14
48 9 0.12
49 1 0.01
50 4 0.05
ACGTcount: A:0.61, C:0.04, G:0.04, T:0.31
Consensus pattern (43 bp):
TAAATAAAAAATTATGTAATAAAATATATTTATAAAAAATAGA
Found at i:38193786 original size:16 final size:16
Alignment explanation
Indices: 38193765--38193798 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
38193755 TTTATTTTAA
38193765 TATTTATATTTATATT
1 TATTTATATTTATATT
* *
38193781 TATTTATTTTTATCTT
1 TATTTATATTTATATT
38193797 TA
1 TA
38193799 AATTTGACGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (16 bp):
TATTTATATTTATATT
Found at i:38199568 original size:20 final size:23
Alignment explanation
Indices: 38199533--38199573 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
38199523 GTGATGGAGC
38199533 GATCATCTTGCTTGAA-AGCATT
1 GATCATCTTGCTTGAAGAGCATT
38199555 GATC-TCTT-CTTGAAGAGCA
1 GATCATCTTGCTTGAAGAGCA
38199574 GAAATGTGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 8 0.44
22 4 0.22
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (23 bp):
GATCATCTTGCTTGAAGAGCATT
Found at i:38203277 original size:27 final size:28
Alignment explanation
Indices: 38203230--38203282 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
38203220 CAACTTCTCT
** *
38203230 TTGAGTTTTTCTTTTTTAAGATTTTTTC
1 TTGAGTTTTTCTTTTAGAAGAGTTTTTC
38203258 TTGAG-TTTTCTTTTAGAAGAGTTTT
1 TTGAGTTTTTCTTTTAGAAGAGTTTT
38203283 AACAATCTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 17 0.77
28 5 0.23
ACGTcount: A:0.17, C:0.06, G:0.15, T:0.62
Consensus pattern (28 bp):
TTGAGTTTTTCTTTTAGAAGAGTTTTTC
Found at i:38205229 original size:45 final size:45
Alignment explanation
Indices: 38205180--38205268 Score: 178
Period size: 45 Copynumber: 2.0 Consensus size: 45
38205170 TTTAGACCTT
38205180 AATTATCCTCTTAAAGAGTTGTATTATGATGAATTCAATTTACAG
1 AATTATCCTCTTAAAGAGTTGTATTATGATGAATTCAATTTACAG
38205225 AATTATCCTCTTAAAGAGTTGTATTATGATGAATTCAATTTACA
1 AATTATCCTCTTAAAGAGTTGTATTATGATGAATTCAATTTACA
38205269 AACTTTTTGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.36, C:0.11, G:0.12, T:0.40
Consensus pattern (45 bp):
AATTATCCTCTTAAAGAGTTGTATTATGATGAATTCAATTTACAG
Found at i:38205443 original size:14 final size:14
Alignment explanation
Indices: 38205424--38205453 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
38205414 CACATTGAAA
*
38205424 AAAGAATCTATTTG
1 AAAGAATCTACTTG
38205438 AAAGAATCTACTTG
1 AAAGAATCTACTTG
38205452 AA
1 AA
38205454 TTTGTCTAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.47, C:0.10, G:0.13, T:0.30
Consensus pattern (14 bp):
AAAGAATCTACTTG
Found at i:38206724 original size:21 final size:21
Alignment explanation
Indices: 38206700--38206739 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
38206690 TTCTGCTCTG
*
38206700 CTCTACTTCCCTCGTTGCTAC
1 CTCTACTTCCCTCGCTGCTAC
**
38206721 CTCTGTTTCCCTCGCTGCT
1 CTCTACTTCCCTCGCTGCT
38206740 GCATGCTTTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.05, C:0.42, G:0.12, T:0.40
Consensus pattern (21 bp):
CTCTACTTCCCTCGCTGCTAC
Found at i:38210209 original size:17 final size:17
Alignment explanation
Indices: 38210187--38210221 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
38210177 TATTATATCC
38210187 TTCAAATACGAACTTGA
1 TTCAAATACGAACTTGA
*
38210204 TTCAAATATGAACTTGA
1 TTCAAATACGAACTTGA
38210221 T
1 T
38210222 AAGAAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.34
Consensus pattern (17 bp):
TTCAAATACGAACTTGA
Done.