Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 124 of 145
Found at i:41449451 original size:30 final size:31
Alignment explanation
Indices: 41449411--41449471 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
41449401 ACTGAATTGT
*
41449411 ACTATTTACTGTATTGGGCTAAGGCCCACAC
1 ACTATTTACTGTAATGGGCTAAGGCCCACAC
* *
41449442 ACTA-TTACTGTAATGGTCTAAGGCCTACAC
1 ACTATTTACTGTAATGGGCTAAGGCCCACAC
41449472 TGTACTAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (31 bp):
ACTATTTACTGTAATGGGCTAAGGCCCACAC
Found at i:41457932 original size:20 final size:20
Alignment explanation
Indices: 41457909--41457967 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 20
41457899 AAGTACAAAC
41457909 AGGGGCATGTATGTGCAATT
1 AGGGGCATGTATGTGCAATT
* * * *
41457929 AGGGGTATCG-AAGTACAAAT
1 AGGGGCAT-GTATGTGCAATT
*
41457949 AGGGACATGTATGTGCAAT
1 AGGGGCATGTATGTGCAAT
41457968 CAAGGCTAAT
Statistics
Matches: 28, Mismatches: 9, Indels: 4
0.68 0.22 0.10
Matches are distributed among these distances:
19 1 0.04
20 26 0.93
21 1 0.04
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.25
Consensus pattern (20 bp):
AGGGGCATGTATGTGCAATT
Found at i:41457941 original size:40 final size:40
Alignment explanation
Indices: 41457826--41458171 Score: 415
Period size: 40 Copynumber: 8.7 Consensus size: 40
41457816 ATCGAACTAT
* * *
41457826 AAACAGCGGCACGTATGTGCAATTAGAGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC
* *
41457866 AAAAAGGAGCACGTAT-TGCAATCAGGGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC
* * *
41457905 AAACAGGGGCATGTATGTGCAATTAGGGGTATCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC
* * * * * **
41457945 AAATAGGGACATGTATGTGCAATCAAGGCTAATGAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC
** * * *
41457985 AAACAGGCACACATATGTGCAATCAGGGGTACCAAAGTAA
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC
* *
41458025 AAATAGGGGCACGTATGTGCAATCAGAGGTACCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC
* * * *
41458065 AAACAGGGGCACATATGTGCAATCAAGGGCACCAAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC
* * * *
41458105 ATACAGTGGCACATATGTGCAATCAGGGGTACCAAAGTAC
1 AAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC
41458145 AAACAGGGGCACGTATGTGCAATCAGG
1 AAACAGGGGCACGTATGTGCAATCAGG
41458172 TATAATTAAC
Statistics
Matches: 258, Mismatches: 47, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
39 34 0.13
40 224 0.87
ACGTcount: A:0.37, C:0.18, G:0.27, T:0.18
Consensus pattern (40 bp):
AAACAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC
Found at i:41458171 original size:20 final size:20
Alignment explanation
Indices: 41458029--41458171 Score: 83
Period size: 20 Copynumber: 7.2 Consensus size: 20
41458019 AAGTAAAAAT
41458029 AGGGGCACGTATGTGCAATC
1 AGGGGCACGTATGTGCAATC
* * * * *
41458049 AGAGGTACCG-AAGTACAAAC
1 AGGGGCA-CGTATGTGCAATC
*
41458069 AGGGGCACATATGTGCAATC
1 AGGGGCACGTATGTGCAATC
* ** * *
41458089 AAGGGCACCAAAGTAC-ATAC
1 AGGGGCACGTATGTGCAAT-C
* *
41458109 AGTGGCACATATGTGCAATC
1 AGGGGCACGTATGTGCAATC
* ** * * *
41458129 AGGGGTACCAAAGTACAAAC
1 AGGGGCACGTATGTGCAATC
41458149 AGGGGCACGTATGTGCAATC
1 AGGGGCACGTATGTGCAATC
41458169 AGG
1 AGG
41458172 TATAATTAAC
Statistics
Matches: 84, Mismatches: 35, Indels: 8
0.66 0.28 0.06
Matches are distributed among these distances:
19 3 0.04
20 77 0.92
21 4 0.05
ACGTcount: A:0.35, C:0.20, G:0.29, T:0.16
Consensus pattern (20 bp):
AGGGGCACGTATGTGCAATC
Found at i:41464538 original size:35 final size:36
Alignment explanation
Indices: 41464463--41464546 Score: 143
Period size: 36 Copynumber: 2.4 Consensus size: 36
41464453 TTGTTTTTAT
*
41464463 TTTTATTTTTATTACATAAATATTAATTTAAAATTA
1 TTTTATTTTTATTACATAAATATTAATTAAAAATTA
*
41464499 TTTTATTTTTATTACCTAAATATTAA-TAAAAATTA
1 TTTTATTTTTATTACATAAATATTAATTAAAAATTA
41464534 TTTTATTTTTATT
1 TTTTATTTTTATT
41464547 TTTAAAATAG
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
35 21 0.46
36 25 0.54
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (36 bp):
TTTTATTTTTATTACATAAATATTAATTAAAAATTA
Found at i:41468565 original size:15 final size:15
Alignment explanation
Indices: 41468545--41468595 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
41468535 TTAAACCAAA
41468545 CAATTATTTTTTTAT
1 CAATTATTTTTTTAT
**
41468560 CAATTAAGTTTTTA-
1 CAATTATTTTTTTAT
*
41468574 CATTTATTTTTTATAT
1 CAATTATTTTTT-TAT
*
41468590 AAATTA
1 CAATTA
41468596 CATAATAAAT
Statistics
Matches: 27, Mismatches: 7, Indels: 3
0.73 0.19 0.08
Matches are distributed among these distances:
14 9 0.33
15 14 0.52
16 4 0.15
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (15 bp):
CAATTATTTTTTTAT
Found at i:41469292 original size:20 final size:20
Alignment explanation
Indices: 41469259--41469296 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
41469249 ACTTATATAT
* *
41469259 AAAAACTTACAACAAAATAA
1 AAAAAATTAAAACAAAATAA
41469279 AAAAAATTAAAACAAAAT
1 AAAAAATTAAAACAAAAT
41469297 TTACTGTCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.74, C:0.11, G:0.00, T:0.16
Consensus pattern (20 bp):
AAAAAATTAAAACAAAATAA
Found at i:41470682 original size:27 final size:27
Alignment explanation
Indices: 41470604--41470682 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
41470594 TGACCACCCA
**
41470604 TGTTTATTATCCCCGCGAACTATCTCG
1 TGTTTATTATCCCATCGAACTATCTCG
* * * *
41470631 TGTTTAATGTCCCATC-AGACAATCTTG
1 TGTTTATTATCCCATCGA-ACTATCTCG
41470658 TGTTTATTATCCCATCGAACTATCT
1 TGTTTATTATCCCATCGAACTATCT
41470683 ATGATGTCGT
Statistics
Matches: 41, Mismatches: 9, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
26 1 0.02
27 39 0.95
28 1 0.02
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (27 bp):
TGTTTATTATCCCATCGAACTATCTCG
Found at i:41470884 original size:45 final size:45
Alignment explanation
Indices: 41470835--41471038 Score: 309
Period size: 45 Copynumber: 4.5 Consensus size: 45
41470825 TGTCATAACG
* * * *
41470835 TCTTTCAGCTATGGTCTTTCTGATTTTTATCATGATGTCATAGCT
1 TCTTTCAGCTATGGTCTTACTCATTTTTATCATGATGCCATAGCA
* *
41470880 TCTTTCAACTATGGTCTTACTCATTTTTATCATGATACCATAGCA
1 TCTTTCAGCTATGGTCTTACTCATTTTTATCATGATGCCATAGCA
* * *
41470925 TCTTTCAGCTATGGTCTTATTCATTTTTGTCACGATGCCATAGCA
1 TCTTTCAGCTATGGTCTTACTCATTTTTATCATGATGCCATAGCA
*
41470970 TCTTTCAGCTATAGTCTTACTCATTTTTATCATGATGCCATAGCA
1 TCTTTCAGCTATGGTCTTACTCATTTTTATCATGATGCCATAGCA
*
41471015 TCTTTCAACTATGGTCTTACTCAT
1 TCTTTCAGCTATGGTCTTACTCAT
41471039 CTTGGCATAT
Statistics
Matches: 142, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 142 1.00
ACGTcount: A:0.22, C:0.22, G:0.12, T:0.44
Consensus pattern (45 bp):
TCTTTCAGCTATGGTCTTACTCATTTTTATCATGATGCCATAGCA
Found at i:41475062 original size:16 final size:16
Alignment explanation
Indices: 41475009--41475062 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
41474999 AGAGTGGAAA
* *
41475009 GAAAATTAGAATGATG
1 GAAAACTAGAAGGATG
* *
41475025 GAAAATTA-AAGAGATA
1 GAAAACTAGAAG-GATG
41475041 GAAAACTAGAAGGATG
1 GAAAACTAGAAGGATG
41475057 GAAAAC
1 GAAAAC
41475063 ATAATTTTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 2 0.06
16 27 0.84
17 3 0.09
ACGTcount: A:0.56, C:0.04, G:0.24, T:0.17
Consensus pattern (16 bp):
GAAAACTAGAAGGATG
Found at i:41480711 original size:34 final size:34
Alignment explanation
Indices: 41480673--41480739 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
41480663 CTGGATAGTT
* *
41480673 GAATTGTTTGAAATAATTTGTTTGAATTGCATGA
1 GAATTGCTTGAAATAATTTGATTGAATTGCATGA
**
41480707 GAATTGCTTGAAATGTTTTGATTGAATTGCATG
1 GAATTGCTTGAAATAATTTGATTGAATTGCATG
41480740 CGGGGTAGGA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.30, C:0.04, G:0.22, T:0.43
Consensus pattern (34 bp):
GAATTGCTTGAAATAATTTGATTGAATTGCATGA
Found at i:41485194 original size:27 final size:26
Alignment explanation
Indices: 41485141--41485289 Score: 115
Period size: 27 Copynumber: 5.5 Consensus size: 26
41485131 GTAAAAATGT
**
41485141 TATGAAAGGAATGCCTTTGCT-ATAATA
1 TATGAAAGGAATG-CTTTG-TGGCAATA
*
41485168 TATGAAAGGAACGCATTTGTGGCAATA
1 TATGAAAGGAATGC-TTTGTGGCAATA
* *
41485195 TATGGAAGGAATGCCTCTGTGGCAATA
1 TATGAAAGGAATG-CTTTGTGGCAATA
*
41485222 TACGAAAGGAATGCTTTAGTGGCAA-A
1 TATGAAAGGAATGCTTT-GTGGCAATA
* * *
41485248 CTTTGAAAGGAATACCTTCGTGGCAA-A
1 -TATGAAAGGAAT-GCTTTGTGGCAATA
*
41485275 CTCTGAAAGGAATGC
1 -TATGAAAGGAATGC
41485290 CTTGACAGCA
Statistics
Matches: 101, Mismatches: 15, Indels: 13
0.78 0.12 0.10
Matches are distributed among these distances:
26 7 0.07
27 90 0.89
28 4 0.04
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (26 bp):
TATGAAAGGAATGCTTTGTGGCAATA
Found at i:41485258 original size:54 final size:54
Alignment explanation
Indices: 41485164--41485289 Score: 127
Period size: 54 Copynumber: 2.3 Consensus size: 54
41485154 CCTTTGCTAT
* * * *
41485164 AATATATGAAAGGAACGCATTTGTGGCAATATATGGAAGGAATGCC-TCTGTGGC
1 AATATACGAAAGGAATGCATTTGTGGCAATATATGAAAGGAATACCTTC-GTGGC
*
41485218 AATATACGAAAGGAATGC-TTTAGTGGCAA-ACTTTGAAAGGAATACCTTCGTGGC
1 AATATACGAAAGGAATGCATTT-GTGGCAATA-TATGAAAGGAATACCTTCGTGGC
41485272 AA-ACT-CTGAAAGGAATGC
1 AATA-TAC-GAAAGGAATGC
41485290 CTTGACAGCA
Statistics
Matches: 62, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
53 6 0.10
54 54 0.87
55 2 0.03
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (54 bp):
AATATACGAAAGGAATGCATTTGTGGCAATATATGAAAGGAATACCTTCGTGGC
Found at i:41490821 original size:50 final size:50
Alignment explanation
Indices: 41490741--41490861 Score: 143
Period size: 50 Copynumber: 2.4 Consensus size: 50
41490731 NNNNNNNNNN
* * *
41490741 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCAAGATG
1 AGAGGTCCCACGTAAGACCATGTCTAGGACATGGCATGGGCACCAAGATG
* * * *
41490791 AGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATG
1 AGAGGTCCCACGTAAGACCATGTCTAGGACATGGCATGGGCACCAAGATG
** * *
41490841 AGAACTCTCATGTAAGACCAT
1 AGAGGTCCCACGTAAGACCAT
41490862 ATCTGTGATA
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 59 1.00
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCACGTAAGACCATGTCTAGGACATGGCATGGGCACCAAGATG
Found at i:41491435 original size:22 final size:22
Alignment explanation
Indices: 41491392--41491436 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
41491382 CAAAATAGGT
*
41491392 CTTTAACGGCGTTTATTTACGC
1 CTTTAACGGCGTTTATTAACGC
*
41491414 CTTTAGCGGCGCTTT-TTAACGC
1 CTTTAACGGCG-TTTATTAACGC
41491436 C
1 C
41491437 ACTAAAGCGC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 17 0.85
23 3 0.15
ACGTcount: A:0.16, C:0.27, G:0.20, T:0.38
Consensus pattern (22 bp):
CTTTAACGGCGTTTATTAACGC
Found at i:41491593 original size:42 final size:42
Alignment explanation
Indices: 41491547--41491749 Score: 282
Period size: 42 Copynumber: 4.8 Consensus size: 42
41491537 TAGAGAAAAA
* * *
41491547 CGCCGCTAAAGATCATGTTCTTTAGTGGCG-TTTTTTCTTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTC-TAAG
* *
41491589 CGCCGCTAAAGAACATAGTCTTTAGCGGCATTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
* **
41491631 CGCCTCTAAAGAGGATGGTCTTTAGCGGCGTTTTTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
*
41491673 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTCTTTCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
* * *
41491715 CGCCGCTAAAGAACATGTTCTTTAACGGCGCTTTT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTT
41491750 ATACAAAAAC
Statistics
Matches: 142, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
42 135 0.95
43 7 0.05
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTTTCTAAG
Found at i:41491904 original size:19 final size:19
Alignment explanation
Indices: 41491880--41491920 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
41491870 ATAATATTTC
*
41491880 AAATTAA-ATGAATAAAATA
1 AAATTAATATCAAT-AAATA
41491899 AAATTAATATCAATAAATA
1 AAATTAATATCAATAAATA
41491918 AAA
1 AAA
41491921 GTGAATTCAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.27
Consensus pattern (19 bp):
AAATTAATATCAATAAATA
Found at i:41492093 original size:21 final size:21
Alignment explanation
Indices: 41492067--41492137 Score: 106
Period size: 21 Copynumber: 3.4 Consensus size: 21
41492057 TTTTGCTCTA
*
41492067 CTCTGCTTCTCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
41492088 CTCTGCTTCCCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* * *
41492109 CGCTACTTCCCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
41492130 CTCTGCTT
1 CTCTGCTT
41492138 TAAGTTGTAG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.04, C:0.46, G:0.18, T:0.31
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:41494243 original size:12 final size:12
Alignment explanation
Indices: 41494186--41494250 Score: 62
Period size: 12 Copynumber: 5.5 Consensus size: 12
41494176 NNCTGTTGTG
41494186 TAAGTTTATATA
1 TAAGTTTATATA
* *
41494198 TAAATTT-TATT
1 TAAGTTTATATA
* * *
41494209 TAAGCTATGTATG
1 TAAG-TTTATATA
41494222 TAAG-TTATATA
1 TAAGTTTATATA
41494233 TAAGTTTATATA
1 TAAGTTTATATA
41494245 TAAGTT
1 TAAGTT
41494251 ATGTAAGTTA
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
11 14 0.33
12 21 0.50
13 7 0.17
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.49
Consensus pattern (12 bp):
TAAGTTTATATA
Found at i:41494254 original size:36 final size:36
Alignment explanation
Indices: 41494184--41494255 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
41494174 NNNNCTGTTG
*
41494184 TGTAAGTTTATATATAAATTTTATTTAAGCTATGTA
1 TGTAAGTTTATATATAAATTTTATATAAGCTATGTA
* *
41494220 TGTAAG-TTATATATAAGTTTATATATAAGTTATGTA
1 TGTAAGTTTATATATAAATTT-TATATAAGCTATGTA
41494256 AGTTATTATG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
35 13 0.41
36 19 0.59
ACGTcount: A:0.38, C:0.01, G:0.12, T:0.49
Consensus pattern (36 bp):
TGTAAGTTTATATATAAATTTTATATAAGCTATGTA
Found at i:41494259 original size:21 final size:21
Alignment explanation
Indices: 41494233--41494275 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
41494223 AAGTTATATA
41494233 TAAGTT-TATATATAAGTTATG
1 TAAGTTAT-TATATAAGTTATG
*
41494254 TAAGTTATTATGTAAGTTATG
1 TAAGTTATTATATAAGTTATG
41494275 T
1 T
41494276 GTTGTGTAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (21 bp):
TAAGTTATTATATAAGTTATG
Found at i:41494264 original size:12 final size:12
Alignment explanation
Indices: 41494204--41494273 Score: 51
Period size: 12 Copynumber: 6.1 Consensus size: 12
41494194 TATATAAATT
* *
41494204 TTATTTAAGCTA
1 TTATGTAAGTTA
41494216 TGTATGTAAGTTA
1 T-TATGTAAGTTA
*
41494229 -TATATAAGTT-
1 TTATGTAAGTTA
*
41494239 TATATATAAG---
1 T-TATGTAAGTTA
41494249 TTATGTAAGTTA
1 TTATGTAAGTTA
41494261 TTATGTAAGTTA
1 TTATGTAAGTTA
41494273 T
1 T
41494274 GTGTTGTGTA
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
9 7 0.15
10 1 0.02
11 9 0.19
12 22 0.46
13 9 0.19
ACGTcount: A:0.36, C:0.01, G:0.14, T:0.49
Consensus pattern (12 bp):
TTATGTAAGTTA
Found at i:41495079 original size:23 final size:23
Alignment explanation
Indices: 41495052--41495641 Score: 1180
Period size: 23 Copynumber: 25.7 Consensus size: 23
41495042 TAAATATTAA
41495052 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495075 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495098 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495121 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495144 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495167 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495190 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495213 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495236 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495259 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495282 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495305 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495328 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495351 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495374 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495397 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495420 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495443 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495466 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495489 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495512 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495535 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495558 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495581 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495604 TAAGTTATGTAAGTTATTATAAG
1 TAAGTTATGTAAGTTATTATAAG
41495627 TAAGTTATGTAAGTT
1 TAAGTTATGTAAGTT
41495642 GTAAGTTATG
Statistics
Matches: 567, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 567 1.00
ACGTcount: A:0.39, C:0.00, G:0.17, T:0.44
Consensus pattern (23 bp):
TAAGTTATGTAAGTTATTATAAG
Found at i:41495647 original size:16 final size:16
Alignment explanation
Indices: 41495626--41495657 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
41495616 GTTATTATAA
41495626 GTAAGTTATGTAAGTT
1 GTAAGTTATGTAAGTT
41495642 GTAAGTTATGTAAGTT
1 GTAAGTTATGTAAGTT
41495658 ATGTATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (16 bp):
GTAAGTTATGTAAGTT
Found at i:41496968 original size:14 final size:14
Alignment explanation
Indices: 41496951--41497002 Score: 59
Period size: 14 Copynumber: 3.4 Consensus size: 14
41496941 TATTTGGCCA
41496951 TATATTCCAGCAAG
1 TATATTCCAGCAAG
41496965 TATATTCCAGCAACTGG
1 TATATTCCAGCAA---G
41496982 AATATATTCCAGCAAG
1 --TATATTCCAGCAAG
41496998 TATAT
1 TATAT
41497003 ATTCCAAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 10
0.77 0.00 0.23
Matches are distributed among these distances:
14 18 0.55
16 1 0.03
17 1 0.03
19 13 0.39
ACGTcount: A:0.37, C:0.19, G:0.13, T:0.31
Consensus pattern (14 bp):
TATATTCCAGCAAG
Found at i:41497769 original size:148 final size:148
Alignment explanation
Indices: 41497471--41497753 Score: 388
Period size: 148 Copynumber: 1.9 Consensus size: 148
41497461 AAGCTAAAAC
* *
41497471 TTGTGGCGCTTTGAGCAAAAACGCCACAAATACCATGGACAAAACGACACCGTTATTAGATAACC
1 TTGTGGCGCTTTGAGCAAAAACGCCACAAATAACATGGACAAAACGACACCGTTATCAGATAACC
* * * *
41497536 ATAAACATTTTTACAGCATTTTATCAAAAGCGCCACTAATAAAAATAGGAAACGGCGTCGTTACC
66 ATAAACATTTTTACAGCACTTTAGCAAAAGCACCACTAATAAAAATAGGAAACGGCGCCGTTACC
41497601 TCAACCACTAATAAATAT
131 TCAACCACTAATAAATAT
* * *
41497619 TTGTGGCGC-TTGCAGTAAAAACGCCACTAATAACATGGACAAAACGGCACCGTTATCAGATAAC
1 TTGTGGCGCTTTG-AGCAAAAACGCCACAAATAACATGGACAAAACGACACCGTTATCAGATAAC
* * * * ** * * *
41497683 CTTAAACATTTTTGCGGCGCTTTAGCTGAAGCACCACTAATAAAAGTAGGAAACGGTGCCGTTTC
65 CATAAACATTTTTACAGCACTTTAGCAAAAGCACCACTAATAAAAATAGGAAACGGCGCCGTTAC
41497748 CTCAAC
130 CTCAAC
41497754 TCGTAGTAAA
Statistics
Matches: 116, Mismatches: 18, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
147 3 0.03
148 113 0.97
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (148 bp):
TTGTGGCGCTTTGAGCAAAAACGCCACAAATAACATGGACAAAACGACACCGTTATCAGATAACC
ATAAACATTTTTACAGCACTTTAGCAAAAGCACCACTAATAAAAATAGGAAACGGCGCCGTTACC
TCAACCACTAATAAATAT
Found at i:41498253 original size:15 final size:16
Alignment explanation
Indices: 41498224--41498256 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
41498214 ATTTAACCCA
*
41498224 TTTTGATATATATATT
1 TTTTGAAATATATATT
41498240 TTTTGAAATA-ATATT
1 TTTTGAAATATATATT
41498255 TT
1 TT
41498257 ATATTTATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (16 bp):
TTTTGAAATATATATT
Found at i:41498316 original size:15 final size:15
Alignment explanation
Indices: 41498298--41498340 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
41498288 AAATCTAACT
*
41498298 CTAAACCCTAAAATC
1 CTAAACCCTAAAACC
* *
41498313 CTAAACCATTAAACC
1 CTAAACCCTAAAACC
41498328 CTTAAACCCTAAA
1 C-TAAACCCTAAA
41498341 CTTTAACCCT
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
15 13 0.59
16 9 0.41
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.21
Consensus pattern (15 bp):
CTAAACCCTAAAACC
Found at i:41498469 original size:21 final size:20
Alignment explanation
Indices: 41498431--41498483 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 20
41498421 CTTAAACCCC
* *
41498431 AAACCTAAAACTCTAAACTCT
1 AAACCT-AAACCCCAAACTCT
*
41498452 AAACCGTAAACCCCAAACTGT
1 AAACC-TAAACCCCAAACTCT
*
41498473 AATCCTAAACC
1 AAACCTAAACC
41498484 ATATTTTTTG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
20 6 0.22
21 20 0.74
22 1 0.04
ACGTcount: A:0.45, C:0.32, G:0.04, T:0.19
Consensus pattern (20 bp):
AAACCTAAACCCCAAACTCT
Found at i:41498654 original size:20 final size:20
Alignment explanation
Indices: 41498616--41498672 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 20
41498606 TCTTCAATTT
41498616 CCAAACT-AAACCCTAAAACC
1 CCAAACTCAAA-CCTAAAACC
* *
41498636 CTAAACTCAAACCTTAAACC
1 CCAAACTCAAACCTAAAACC
41498656 CCAAACTCAAACTCTAA
1 CCAAACTCAAAC-CTAA
41498673 CACATAAACA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
20 25 0.81
21 6 0.19
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.16
Consensus pattern (20 bp):
CCAAACTCAAACCTAAAACC
Found at i:41498859 original size:21 final size:21
Alignment explanation
Indices: 41498833--41498906 Score: 93
Period size: 21 Copynumber: 3.7 Consensus size: 21
41498823 ACCTTTAAAT
41498833 CCCCTAACCCCTAAAGCATAA
1 CCCCTAACCCCTAAAGCATAA
* *
41498854 CCCCTAACCCAT-AA--AT-C
1 CCCCTAACCCCTAAAGCATAA
41498871 CCCCTAACCCCTAAAGCATAA
1 CCCCTAACCCCTAAAGCATAA
*
41498892 CACCTAACCCCTAAA
1 CCCCTAACCCCTAAA
41498907 CCTCAAATCC
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
17 11 0.25
18 4 0.09
20 4 0.09
21 25 0.57
ACGTcount: A:0.38, C:0.45, G:0.03, T:0.15
Consensus pattern (21 bp):
CCCCTAACCCCTAAAGCATAA
Found at i:41498884 original size:38 final size:37
Alignment explanation
Indices: 41498828--41498906 Score: 131
Period size: 38 Copynumber: 2.1 Consensus size: 37
41498818 ACTTAACCTT
*
41498828 TAAATCCCCTAACCCCTAAAGCATAACCCCTAACCCA
1 TAAATCCCCTAACCCCTAAAGCATAACACCTAACCCA
*
41498865 TAAATCCCCCTAACCCCTAAAGCATAACACCTAACCCC
1 TAAAT-CCCCTAACCCCTAAAGCATAACACCTAACCCA
41498903 TAAA
1 TAAA
41498907 CCTCAAATCC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
37 5 0.13
38 34 0.87
ACGTcount: A:0.39, C:0.42, G:0.03, T:0.16
Consensus pattern (37 bp):
TAAATCCCCTAACCCCTAAAGCATAACACCTAACCCA
Found at i:41498890 original size:24 final size:21
Alignment explanation
Indices: 41498873--41498933 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
41498863 CATAAATCCC
*
41498873 CCTAACCCCTAAAGCATAACA
1 CCTAACCCCTAAACCATAACA
41498894 CCTAACCCCTAAACC-TCAA-A
1 CCTAACCCCTAAACCAT-AACA
*
41498914 TCCTAAACCCTAAATCCATA
1 -CCTAACCCCTAAA-CCATA
41498934 TCCCGACCTA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
20 2 0.06
21 28 0.82
22 3 0.09
23 1 0.03
ACGTcount: A:0.41, C:0.39, G:0.02, T:0.18
Consensus pattern (21 bp):
CCTAACCCCTAAACCATAACA
Found at i:41499285 original size:117 final size:114
Alignment explanation
Indices: 41499143--41499377 Score: 328
Period size: 117 Copynumber: 2.0 Consensus size: 114
41499133 TAAATTATTT
* *
41499143 TAAATCCCTGACCATTAGCGACGCTTTATTAAAAACGCCGCTAAATCCCCTGAAAGCTC-CGAAA
1 TAAAGCCCTGAACATTAGCGACGCTTTATTAAAAACGCCGCTAAATCCCC-GAAAGCTCAC-AAA
* * * *
41499207 ACGGCGCCGTTGGGTTTAGGTTTTTTTTTGCGGCGCTTTCCCAAAAACGCCGC
64 ACGACACCGTTGGGCTTAGG--TTTTTTAGCGGCGCTTTCCCAAAAACGCCGC
* * *
41499260 TAAAGCCCTGAACATTAGCGGCGCTTTCTTCAAAACGCCGCTAAATCCCCGAAAGCTCACAAAAC
1 TAAAGCCCTGAACATTAGCGACGCTTTATTAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAAC
* *
41499325 GACATCGTTGGGCTTAGGTTTTTTAGCGGCGCTTTCCCAAAAACGCTGC
66 GACACCGTTGGGCTTAGGTTTTTTAGCGGCGCTTTCCCAAAAACGCCGC
41499374 TAAA
1 TAAA
41499378 TCCCCGAAAT
Statistics
Matches: 106, Mismatches: 11, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
114 33 0.31
116 27 0.25
117 46 0.43
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (114 bp):
TAAAGCCCTGAACATTAGCGACGCTTTATTAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAAC
GACACCGTTGGGCTTAGGTTTTTTAGCGGCGCTTTCCCAAAAACGCCGC
Found at i:41499368 original size:73 final size:73
Alignment explanation
Indices: 41499274--41499521 Score: 311
Period size: 73 Copynumber: 3.4 Consensus size: 73
41499264 GCCCTGAACA
* * *
41499274 TTAGCGGCGCTTTCTTC-AAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGACATCGTTGGGC
1 TTAGCGGCGCTTTC-CCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGACGTCGTTGGGC
41499338 TTAGGTTTT
65 TTAGGTTTT
* * * *
41499347 TTAGCGGCGCTTTCCCAAAAACGCTGCTAAATCCCCGAAATCTCAGAAAACGATGCCGTTGGGCT
1 TTAGCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGACGTCGTTGGGCT
41499412 TAGGTTTT
66 TAGGTTTT
* * * * *
41499420 TTAGCGGCGCTTTCCCAAAAACGCCGCTAAATCCTCAAAAGCTCGGTAAACGGCGTCGTTGGGCT
1 TTAGCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGACGTCGTTGGGCT
* *
41499485 AAGG-TTC
66 TAGGTTTT
* ***
41499492 TTCGCGGCGCTTTCTGGAAAACGCCGCTAA
1 TTAGCGGCGCTTTCCCAAAAACGCCGCTAA
41499522 TTCTTATTTT
Statistics
Matches: 152, Mismatches: 22, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
72 29 0.19
73 123 0.81
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (73 bp):
TTAGCGGCGCTTTCCCAAAAACGCCGCTAAATCCCCGAAAGCTCAGAAAACGACGTCGTTGGGCT
TAGGTTTT
Found at i:41500991 original size:62 final size:57
Alignment explanation
Indices: 41500877--41501002 Score: 153
Period size: 62 Copynumber: 2.1 Consensus size: 57
41500867 ATCACTTTAA
* * * **
41500877 TATTAAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTCATATTAAATC
1 TATTAAATTAATAGAATACTTATCAAGATAAACATTAAATTAAATTAAATATT-AATC
*
41500935 TTATTAAATTAATAGAATATTTATCTATAAGATAAACATTAAATTAAATTAAATATTAATC
1 -TATTAAATTAATAGAATACTTATC---AAGATAAACATTAAATTAAATTAAATATTAATC
41500996 TATTAAA
1 TATTAAA
41501003 ATAAAATTAT
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
59 22 0.38
60 7 0.12
61 4 0.07
62 25 0.43
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (57 bp):
TATTAAATTAATAGAATACTTATCAAGATAAACATTAAATTAAATTAAATATTAATC
Found at i:41500997 original size:36 final size:35
Alignment explanation
Indices: 41500937--41501011 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 35
41500927 ATTAAATCTT
* *
41500937 ATTAAATTAATAGAATATTTATCTA-TAAGATAAA
1 ATTAAATTAATAGAATATTAATCTATTAAAATAAA
41500971 CATTAAATTAAATTA-AATATTAATCTATTAAAATAAA
1 -ATTAAATT-AA-TAGAATATTAATCTATTAAAATAAA
41501008 ATTA
1 ATTA
41501012 TTTTTTGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
35 8 0.23
36 17 0.49
37 10 0.29
ACGTcount: A:0.55, C:0.04, G:0.03, T:0.39
Consensus pattern (35 bp):
ATTAAATTAATAGAATATTAATCTATTAAAATAAA
Found at i:41507277 original size:16 final size:16
Alignment explanation
Indices: 41507233--41507281 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 16
41507223 GATTTTAGTA
41507233 AAGTATATATTCCAGC
1 AAGTATATATTCCAGC
*
41507249 AACTGGAATATATTCCAGC
1 AA---GTATATATTCCAGC
41507268 AAGTATATATTCCA
1 AAGTATATATTCCA
41507282 AAGTTATAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
16 13 0.46
19 15 0.54
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31
Consensus pattern (16 bp):
AAGTATATATTCCAGC
Found at i:41508068 original size:15 final size:15
Alignment explanation
Indices: 41508048--41508109 Score: 52
Period size: 15 Copynumber: 4.1 Consensus size: 15
41508038 TGGGATTTAA
*
41508048 CCCTAAACCTTAAAC
1 CCCTAAACCCTAAAC
*
41508063 CCCTAAACCCTAAAA
1 CCCTAAACCCTAAAC
* * *
41508078 TCCTAAGCCGTTAAAC
1 CCCTAAACC-CTAAAC
**
41508094 CTTTAAACCCTAAAC
1 CCCTAAACCCTAAAC
41508109 C
1 C
41508110 TTAAATCTTA
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
15 26 0.74
16 9 0.26
ACGTcount: A:0.39, C:0.37, G:0.03, T:0.21
Consensus pattern (15 bp):
CCCTAAACCCTAAAC
Found at i:41508092 original size:31 final size:30
Alignment explanation
Indices: 41508049--41508107 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
41508039 GGGATTTAAC
41508049 CCTAAACCTTAAACCCCTAAACCCTAAAAT
1 CCTAAACCTTAAACCCCTAAACCCTAAAAT
* **
41508079 CCTAAGCCGTTAAACCTTTAAACCCTAAA
1 CCTAAACC-TTAAACCCCTAAACCCTAAA
41508108 CCTTAAATCT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 7 0.28
31 18 0.72
ACGTcount: A:0.41, C:0.34, G:0.03, T:0.22
Consensus pattern (30 bp):
CCTAAACCTTAAACCCCTAAACCCTAAAAT
Found at i:41509331 original size:229 final size:230
Alignment explanation
Indices: 41508899--41509829 Score: 942
Period size: 229 Copynumber: 4.1 Consensus size: 230
41508889 CCAAAACTCT
* ** * * * * *
41508899 GTTAAGATATTTTGCGGCGCTTTAAAAAAGCGCCGCTAACAATATGCTTTCGCGGCGGTTTCCCG
1 GTTAAGATATTTTGCGGCGCATCCAAAAAGCGCCGCTAATACTATCCTTTAGCGGCGTTTTCCCG
* * * * *
41508964 TAAGCGCCACAAATTTTAGTATACATCAAGACCAAAACGCTGCGTTTTGGTTAAGGTATTTTACG
66 TAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGATGCGTTTTGGTTAAGATATTTTGCG
** * * * * *
41509029 GCGCTAGCCACAAATCGCCGCTAATACTATGCTTTAGCGGCGTTTCA-TCGTAAGCACCAATAAT
131 GCGCTATTCACAAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTACTCATAAGCGCCACTAAT
* *
41509093 TCAAGTATACATCCAA-ACCAAAACGTTGCGTTTTG
196 TCTAGTATACAT-CAAGACCAAAACGCTGCGTTTTG
* **
41509128 GTTCAGATATTTTGCGGCGCATCCAAAAAGCGCCGCTAATACTATCCTTTAGCGGCGTTTTCCAA
1 GTTAAGATATTTTGCGGCGCATCCAAAAAGCGCCGCTAATACTATCCTTTAGCGGCGTTTTCCCG
* ** * ** *
41509193 TAAGCGCCACTAATGCTAACATACCTCAAGACCAAAACTTTGCGTTTTGGTTAAGATATTTTGTG
66 TAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGATGCGTTTTGGTTAAGATATTTTGCG
* ** *
41509258 GCGCTATT-ACCAAAGCGCCGCTAATACTATCCTTTAATGGCGTTTTACT-GTAAGCGCCACTAA
131 GCGCTATTCA-CAAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTACTCATAAGCGCCACTAA
*
41509321 TTCTAGTATACATCAAGACCAAAACGCTGTGTTTTG
195 TTCTAGTATACATCAAGACCAAAACGCTGCGTTTTG
* ** ** * * *
41509357 GTTAAGATATTTTGCGGCGCCAGCCACTACTCGCCGCTAATACTATGCTATAGCGGCGTTTT-CG
1 GTTAAGATATTTTGCGGCG-CATCCAAAAAGCGCCGCTAATACTATCCTTTAGCGGCGTTTTCCC
* * *
41509421 GTAAACGCCACTAATTCTAGTATA-AGCAAGACCAAAACGATGCGTTTTGGTTTAGATATTTTGC
65 GTAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGATGCGTTTTGGTTAAGATATTTTGC
* * * * *
41509485 GGCGCT-TTCAAAAAGTGCCGCTAATACTAT-CTGTTTGCAGCGTTTTCCT-ATAAGCGCCACTA
130 GGCGCTATTCACAAAGCGCCGCTAATACTATGCT-TTAGCGGCGTTTTACTCATAAGCGCCACTA
* * * *
41509547 ATTCTAGCATACCTCAAGACC-AAACTCTGC-ATTTG
194 ATTCTAGTATACATCAAGACCAAAACGCTGCGTTTTG
* * * **** * *
41509582 GTAAAGATATTTTACGGCGCTTTTGGCAAAGCGCAGCTAATACTATGCC-TTAACGGCGTTTTCC
1 GTTAAGATATTTTGCGGCGC-ATCCAAAAAGCGCCGCTAATACTAT-CCTTTAGCGGCGTTTTCC
* * * * *
41509646 CTTAAGCACCACTAATTCTAGGATACATCAAGACCAAAACTATGCGTTTCGGTTAAGATATTTTC
64 CGTAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGATGCGTTTTGGTTAAGATATTTT-
* * * * *
41509711 GTGGCGC-ATTTCGCAAAACGCCGCTAATAC---GCTTTAGCGGTGTTTT-CTCATAATCGCCAC
128 GCGGCGCTA-TTCACAAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTACTCATAAGCGCCAC
* ** *
41509771 TAATTCTAGTATACGTCAAGATGAAAACGCTGTGTTTTG
192 TAATTCTAGTATACATCAAGACCAAAACGCTGCGTTTTG
*
41509810 GTTAAGATATTTTGTGGCGC
1 GTTAAGATATTTTGCGGCGC
41509830 TTTGTGGTAA
Statistics
Matches: 576, Mismatches: 109, Indels: 35
0.80 0.15 0.05
Matches are distributed among these distances:
224 1 0.00
225 50 0.09
226 70 0.12
227 105 0.18
228 72 0.12
229 242 0.42
230 36 0.06
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (230 bp):
GTTAAGATATTTTGCGGCGCATCCAAAAAGCGCCGCTAATACTATCCTTTAGCGGCGTTTTCCCG
TAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGATGCGTTTTGGTTAAGATATTTTGCG
GCGCTATTCACAAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTACTCATAAGCGCCACTAAT
TCTAGTATACATCAAGACCAAAACGCTGCGTTTTG
Found at i:41509543 original size:113 final size:114
Alignment explanation
Indices: 41508899--41509832 Score: 908
Period size: 115 Copynumber: 8.2 Consensus size: 114
41508889 CCAAAACTCT
* * * * * **
41508899 GTTAAGATATTTTGCGGCGCTTTAAAAAAGCGCCGCTAACAATATGCTTTCGCGGCGGTTTCCCG
1 GTTAAGATATTTTGCGGCGCTTTCAAAAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCTA
* *
41508964 TAAGCGCCACAAATTTTAGTATACATCAAGACCAAAACGCTGCGTTTTG
66 TAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGCTGCGTTTTG
* * ** * * *
41509013 GTTAAGGTATTTTACGGCGCTAGCCACAAATCGCCGCTAATACTATGCTTTAGCGGCG-TTTCAT
1 GTTAAGATATTTTGCGGCGCT-TTCAAAAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCT
* * * * *
41509077 CGTAAGCACCAATAATTCAAGTATACATCCAA-ACCAAAACGTTGCGTTTTG
65 -ATAAGCGCCACTAATTCTAGTATACAT-CAAGACCAAAACGCTGCGTTTTG
* * * * *
41509128 GTTCAGATATTTTGCGGCGCATCCAAAAAGCGCCGCTAATACTATCCTTTAGCGGCGTTTTCCAA
1 GTTAAGATATTTTGCGGCGCTTTCAAAAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCTA
* ** * **
41509193 TAAGCGCCACTAATGCTAACATACCTCAAGACCAAAACTTTGCGTTTTG
66 TAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGCTGCGTTTTG
* * * ** *
41509242 GTTAAGATATTTTGTGGCGCTATT-ACCAAAGCGCCGCTAATACTATCCTTTAATGGCGTTTTAC
1 GTTAAGATATTTTGCGGCGCT-TTCA-AAAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCC
* *
41509306 TGTAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGCTGTGTTTTG
64 TATAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGCTGCGTTTTG
*** ** ** * *
41509357 GTTAAGATATTTTGCGGCGCCAGCCACTACTCGCCGCTAATACTATGCTATAGCGGCGTTTTCGG
1 GTTAAGATATTTTGCGGCG-CTTTCAAAAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTC-C
* *
41509422 TA-AA-CGCCACTAATTCTAGTATA-AGCAAGACCAAAACGATGCGTTTTG
64 TATAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGCTGCGTTTTG
* * * *
41509470 GTTTAGATATTTTGCGGCGCTTTCAAAAAGTGCCGCTAATACTAT-CTGTTTGCAGCGTTTTCCT
1 GTTAAGATATTTTGCGGCGCTTTCAAAAAGCGCCGCTAATACTATGCT-TTAGCGGCGTTTTCCT
* * * *
41509534 ATAAGCGCCACTAATTCTAGCATACCTCAAGACC-AAACTCTGC-ATTTG
65 ATAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGCTGCGTTTTG
* * *** * * *
41509582 GTAAAGATATTTTACGGCGCTTTTGGCAAAGCGCAGCTAATACTATGCCTTAACGGCGTTTTCCC
1 GTTAAGATATTTTGCGGCGC-TTTCAAAAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTT-CC
* * ** *
41509647 T-TAAGCACCACTAATTCTAGGATACATCAAGACCAAAACTATGCGTTTCG
64 TATAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGCTGCGTTTTG
* * *
41509697 GTTAAGATATTTTCGTGGCGCATTTCGCAAAA-CGCCGCTAATAC---GCTTTAGCGGTGTTTT-
1 GTTAAGATATTTT-GCGGCGC-TTTC-AAAAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTC
* * ** *
41509757 CTCATAATCGCCACTAATTCTAGTATACGTCAAGATGAAAACGCTGTGTTTTG
63 CT-ATAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGCTGCGTTTTG
*
41509810 GTTAAGATATTTTGTGGCGCTTT
1 GTTAAGATATTTTGCGGCGCTTT
41509833 GTGGTAAACG
Statistics
Matches: 668, Mismatches: 129, Indels: 49
0.79 0.15 0.06
Matches are distributed among these distances:
111 9 0.01
112 59 0.09
113 193 0.29
114 149 0.22
115 230 0.34
116 25 0.04
117 3 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.31
Consensus pattern (114 bp):
GTTAAGATATTTTGCGGCGCTTTCAAAAAGCGCCGCTAATACTATGCTTTAGCGGCGTTTTCCTA
TAAGCGCCACTAATTCTAGTATACATCAAGACCAAAACGCTGCGTTTTG
Found at i:41515772 original size:27 final size:26
Alignment explanation
Indices: 41515737--41515792 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 26
41515727 GTTACATTTT
41515737 AATCCTTTGGCACCAATGGTGCCGCC
1 AATCCTTTGGCACCAATGGTGCCGCC
**
41515763 AATCTCTTTGGCACCTTTGGTGCCGCC
1 AATC-CTTTGGCACCAATGGTGCCGCC
41515790 AAT
1 AAT
41515793 GTGATTGGCC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 4 0.15
27 23 0.85
ACGTcount: A:0.18, C:0.32, G:0.21, T:0.29
Consensus pattern (26 bp):
AATCCTTTGGCACCAATGGTGCCGCC
Found at i:41515800 original size:27 final size:27
Alignment explanation
Indices: 41515743--41515801 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 27
41515733 TTTTAATCCT
*
41515743 TTGGCACCAATGGTGCCGCCAATCTCT
1 TTGGCACCAATGGTGCCGCCAATCTCA
** * *
41515770 TTGGCACCTTTGGTGCCGCCAATGTGA
1 TTGGCACCAATGGTGCCGCCAATCTCA
41515797 TTGGC
1 TTGGC
41515802 CTAATCAGGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.15, C:0.29, G:0.27, T:0.29
Consensus pattern (27 bp):
TTGGCACCAATGGTGCCGCCAATCTCA
Found at i:41515905 original size:29 final size:27
Alignment explanation
Indices: 41515849--41515911 Score: 99
Period size: 29 Copynumber: 2.3 Consensus size: 27
41515839 TTTTTTTAGT
*
41515849 ATATTTTGATAAATAAAAAAATTTATA
1 ATATTTTGATAAATAAAAAAAGTTATA
41515876 ATATTTTGATAAATAAAAAAAAAGTTATA
1 ATATTTTGATAAAT--AAAAAAAGTTATA
41515905 ATATTTT
1 ATATTTT
41515912 AGTTATTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
27 14 0.42
29 19 0.58
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (27 bp):
ATATTTTGATAAATAAAAAAAGTTATA
Found at i:41517821 original size:19 final size:19
Alignment explanation
Indices: 41517784--41517822 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
41517774 CTGTTGTCAG
*
41517784 GTTTTTTTTCTGTTTTTTT
1 GTTTTTTTTCTGTTATTTT
41517803 GTTTTTTTT-TGTATATTTT
1 GTTTTTTTTCTGT-TATTTT
41517822 G
1 G
41517823 ATAAATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.05, C:0.03, G:0.13, T:0.79
Consensus pattern (19 bp):
GTTTTTTTTCTGTTATTTT
Found at i:41517845 original size:27 final size:28
Alignment explanation
Indices: 41517815--41517877 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 28
41517805 TTTTTTTTGT
*
41517815 ATATTTTGATAAAT-AAAAAAATTTATA
1 ATATTTTGATAAATAAAAAAAAGTTATA
41517842 ATATTTTGATAAATAAAAAAAAAGTTATA
1 ATATTTTGATAAAT-AAAAAAAAGTTATA
41517871 ATATTTT
1 ATATTTT
41517878 AGTTATTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
27 14 0.42
29 19 0.58
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.41
Consensus pattern (28 bp):
ATATTTTGATAAATAAAAAAAAGTTATA
Found at i:41521789 original size:18 final size:17
Alignment explanation
Indices: 41521763--41521798 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
41521753 TTTGGTTATA
41521763 TTTAATTTTCGATATGTT
1 TTTAATTTT-GATATGTT
*
41521781 TTTATTTTTGATATGTT
1 TTTAATTTTGATATGTT
41521798 T
1 T
41521799 CATTTAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.19, C:0.03, G:0.11, T:0.67
Consensus pattern (17 bp):
TTTAATTTTGATATGTT
Found at i:41521958 original size:47 final size:47
Alignment explanation
Indices: 41521889--41521978 Score: 162
Period size: 47 Copynumber: 1.9 Consensus size: 47
41521879 TTTGGTCTTC
41521889 AAACAATGTTTTATATTACTTATATTGTCTGATTAAAAATTATAATT
1 AAACAATGTTTTATATTACTTATATTGTCTGATTAAAAATTATAATT
* *
41521936 AAACAATGTTTTATATTACTTATATTGTTTGATTAAAAGTTAT
1 AAACAATGTTTTATATTACTTATATTGTCTGATTAAAAATTAT
41521979 CTCAACAAAC
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.39, C:0.06, G:0.08, T:0.48
Consensus pattern (47 bp):
AAACAATGTTTTATATTACTTATATTGTCTGATTAAAAATTATAATT
Found at i:41522565 original size:45 final size:44
Alignment explanation
Indices: 41522478--41522568 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 44
41522468 TACAACCTCG
41522478 TTCCATTCAACCAAACACAAGAATACTATTACAATTATATTCCA
1 TTCCATTCAACCAAACACAAGAATACTATTACAATTATATTCCA
* * * *
41522522 TTCCATTCAACTAAACA-ATTGAATTACTATTACAGTTCTATTCCA
1 TTCCATTCAACCAAACACA-AGAA-TACTATTACAATTATATTCCA
41522567 TT
1 TT
41522569 ACAGCTCTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
43 1 0.02
44 19 0.46
45 21 0.51
ACGTcount: A:0.38, C:0.23, G:0.03, T:0.35
Consensus pattern (44 bp):
TTCCATTCAACCAAACACAAGAATACTATTACAATTATATTCCA
Found at i:41522569 original size:16 final size:16
Alignment explanation
Indices: 41522550--41522580 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
41522540 TTGAATTACT
*
41522550 ATTACAGTTCTATTCC
1 ATTACAGCTCTATTCC
41522566 ATTACAGCTCTATTC
1 ATTACAGCTCTATTC
41522581 TAGTACAGCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.42
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:41522872 original size:39 final size:38
Alignment explanation
Indices: 41522817--41522921 Score: 120
Period size: 40 Copynumber: 2.7 Consensus size: 38
41522807 AAAAGAGAGA
* *
41522817 GAAAGTTATCCTAATTTAATTTTAAATCATTTTTAAAAT
1 GAAAGTTATCC-AATTTATTTTTAAATCATTTTAAAAAT
*
41522856 GAAAGTTATTCCAATTTATTTTTTAAATTATTTTAAAAAT
1 GAAAGTTA-TCCAATTTA-TTTTTAAATCATTTTAAAAAT
* * *
41522896 AAAAATGATCTCAATTTATTTTTAAA
1 GAAAGTTATC-CAATTTATTTTTAAA
41522922 ATGATTTGTT
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
39 24 0.42
40 33 0.58
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.47
Consensus pattern (38 bp):
GAAAGTTATCCAATTTATTTTTAAATCATTTTAAAAAT
Found at i:41524199 original size:21 final size:21
Alignment explanation
Indices: 41524159--41524199 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
41524149 TTCTAATTTT
*
41524159 TTAAAATTTATTAAAAATAAA
1 TTAAAATTTATGAAAAATAAA
* *
41524180 TTAAAATTTCTGAAATATAA
1 TTAAAATTTATGAAAAATAA
41524200 TTTTTTTATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.39
Consensus pattern (21 bp):
TTAAAATTTATGAAAAATAAA
Found at i:41524218 original size:21 final size:21
Alignment explanation
Indices: 41524194--41524269 Score: 55
Period size: 24 Copynumber: 3.3 Consensus size: 21
41524184 AATTTCTGAA
41524194 ATATAATTTTTTTATAATAAT
1 ATATAATTTTTTTATAATAAT
*
41524215 ATATCAATTTAATTTTATATTAGAT
1 ATAT-AATTT--TTTTATAATA-AT
*
41524240 AAATATAATTTTTATGTAT-GTAAT
1 --ATATAATTTTT-T-TATAATAAT
41524264 ATATAA
1 ATATAA
41524270 ATATAAAATG
Statistics
Matches: 45, Mismatches: 2, Indels: 15
0.73 0.03 0.24
Matches are distributed among these distances:
21 4 0.09
22 11 0.24
24 13 0.29
25 5 0.11
26 8 0.18
27 4 0.09
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.51
Consensus pattern (21 bp):
ATATAATTTTTTTATAATAAT
Found at i:41524537 original size:16 final size:15
Alignment explanation
Indices: 41524516--41524567 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
41524506 TAATTTACAA
41524516 AAAATTGATTTAAATC
1 AAAATT-ATTTAAATC
* *
41524532 AAAATTATATATAT-
1 AAAATTATTTAAATC
*
41524546 AAAATTATATAAAATC
1 AAAATTAT-TTAAATC
41524562 AAAATT
1 AAAATT
41524568 TATCTATACA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
14 8 0.28
15 9 0.31
16 12 0.41
ACGTcount: A:0.58, C:0.04, G:0.02, T:0.37
Consensus pattern (15 bp):
AAAATTATTTAAATC
Found at i:41529939 original size:20 final size:19
Alignment explanation
Indices: 41529896--41529944 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
41529886 TAGTAATATT
41529896 TTAATAATAATATTTAATAC
1 TTAA-AATAATATTTAATAC
*
41529916 -TAAAATATTATATTAATAC
1 TTAAAATAATAT-TTAATAC
41529935 TTAAAATAAT
1 TTAAAATAAT
41529945 TGTCTTTGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 7 0.28
19 10 0.40
20 8 0.32
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (19 bp):
TTAAAATAATATTTAATAC
Found at i:41530115 original size:29 final size:29
Alignment explanation
Indices: 41530082--41530172 Score: 173
Period size: 29 Copynumber: 3.1 Consensus size: 29
41530072 TAAACACCAT
*
41530082 AGGTTACGAAAACATAAATAAGAGAATTA
1 AGGTTACAAAAACATAAATAAGAGAATTA
41530111 AGGTTACAAAAACATAAATAAGAGAATTA
1 AGGTTACAAAAACATAAATAAGAGAATTA
41530140 AGGTTACAAAAACATAAATAAGAGAATTA
1 AGGTTACAAAAACATAAATAAGAGAATTA
41530169 AGGT
1 AGGT
41530173 ATCTTATAAC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
29 61 1.00
ACGTcount: A:0.56, C:0.07, G:0.16, T:0.21
Consensus pattern (29 bp):
AGGTTACAAAAACATAAATAAGAGAATTA
Found at i:41531071 original size:17 final size:17
Alignment explanation
Indices: 41531051--41531091 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
41531041 TTGAGCGAGC
41531051 CCTATATTATATGCAAG
1 CCTATATTATATGCAAG
* * *
41531068 CCTATTTTGTGTGCAAG
1 CCTATATTATATGCAAG
41531085 CCTATAT
1 CCTATAT
41531092 GTATGCGAGG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.39
Consensus pattern (17 bp):
CCTATATTATATGCAAG
Found at i:41531286 original size:27 final size:26
Alignment explanation
Indices: 41531243--41531301 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
41531233 TCTCTTGTGC
* * *
41531243 GAACCCCTATCGCGAACTGCCTTTGT
1 GAACTCCTATCGCGAACTACCTATGT
*
41531269 GAACTCCTATCGTTGAACTACCTATGT
1 GAACTCCTATCG-CGAACTACCTATGT
41531296 GAACTC
1 GAACTC
41531302 TCCTATGTGA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 11 0.39
27 17 0.61
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.29
Consensus pattern (26 bp):
GAACTCCTATCGCGAACTACCTATGT
Found at i:41531287 original size:14 final size:12
Alignment explanation
Indices: 41531223--41531328 Score: 61
Period size: 14 Copynumber: 7.9 Consensus size: 12
41531213 GTGAACTATG
41531223 CTATGTGAACTC
1 CTATGTGAACTC
*
41531235 TCT-TGTGCGAACCC
1 -CTATGT--GAACTC
*
41531249 CTATCGCGAACTGC
1 CTAT-GTGAACT-C
*
41531263 CTTTGTGAACTC
1 CTATGTGAACTC
41531275 CTATCGTTGAACTAC
1 CTAT-G-TGAACT-C
41531290 CTATGTGAACTCTC
1 CTATGTGAA--CTC
41531304 CTATGTGAACCTC
1 CTATGTGAA-CTC
*
41531317 GTTATGTGAACT
1 -CTATGTGAACT
41531329 GCCTTAATAC
Statistics
Matches: 74, Mismatches: 8, Indels: 22
0.71 0.08 0.21
Matches are distributed among these distances:
12 7 0.09
13 24 0.32
14 35 0.47
15 8 0.11
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.33
Consensus pattern (12 bp):
CTATGTGAACTC
Found at i:41531312 original size:27 final size:26
Alignment explanation
Indices: 41531207--41531313 Score: 71
Period size: 27 Copynumber: 4.0 Consensus size: 26
41531197 ATGCGAGCTA
* *
41531207 TACCTTGTGAACTATGCTAT-GTGAAC
1 TACCTTGTGAAC-CTCCTATCGTGAAC
*
41531233 T-CTCTTGTGCGAACC-CCTATCGCGAAC
1 TAC-CTTGT--GAACCTCCTATCGTGAAC
*
41531260 TGCCTTTGTGAA-CTCCTATCGTTGAAC
1 TACC-TTGTGAACCTCCTATCG-TGAAC
41531287 TACCTATGTGAACTCTCCTAT-GTGAAC
1 TACCT-TGTGAAC-CTCCTATCGTGAAC
41531314 CTCGTTATGT
Statistics
Matches: 65, Mismatches: 5, Indels: 21
0.71 0.05 0.23
Matches are distributed among these distances:
25 2 0.03
26 21 0.32
27 25 0.38
28 10 0.15
29 7 0.11
ACGTcount: A:0.22, C:0.27, G:0.18, T:0.33
Consensus pattern (26 bp):
TACCTTGTGAACCTCCTATCGTGAAC
Found at i:41533295 original size:50 final size:50
Alignment explanation
Indices: 41533200--41533340 Score: 138
Period size: 50 Copynumber: 2.8 Consensus size: 50
41533190 TATTGAGGTT
*** *
41533200 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGACATGGGCACCGAG
* * * *
41533250 ATGAGATGTCCCCCGTAAGACCATGTTTGGGACATGACATGGGCACCGAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGACATGGGCACCGAG
* ** * * * * *
41533300 AGGAGAACTCTCACATAAGACCATATCTGGGATATGGCATG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGACATG
41533341 TAACACCCCA
Statistics
Matches: 73, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
50 73 1.00
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATGACATGGGCACCGAG
Found at i:41540099 original size:18 final size:17
Alignment explanation
Indices: 41540071--41540105 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
41540061 NNNNNNNAGA
*
41540071 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
41540088 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
41540106 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:41540296 original size:39 final size:40
Alignment explanation
Indices: 41540253--41540357 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 40
41540243 TTCCATTATG
41540253 CTATTACACCTCTATTCCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
* *** *
41540292 CTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAACACAAGATTTA
41540337 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
41540358 ACACCTCTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
39 15 0.28
40 5 0.09
44 17 0.31
45 17 0.31
ACGTcount: A:0.31, C:0.30, G:0.05, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
Found at i:41540351 original size:45 final size:44
Alignment explanation
Indices: 41540251--41540360 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
41540241 TTTTCCATTA
41540251 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * ***
41540290 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
41540335 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
41540361 CCTCTAATCC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 25 0.43
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:41540360 original size:16 final size:16
Alignment explanation
Indices: 41540339--41540376 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
41540329 TTGATTTGCT
*
41540339 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
41540355 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
41540371 AATACA
1 ATTACA
41540377 GCGAACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.32
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:41541365 original size:27 final size:26
Alignment explanation
Indices: 41541333--41541398 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 26
41541323 TACGACAATA
41541333 CGATCATTTTACCTTACAGGGGTAGCT
1 CGATCATTTTACCTT-CAGGGGTAGCT
*
41541360 CGATCATTTTACCCTTCAGGGGTATCT
1 CGATCATTTTA-CCTTCAGGGGTAGCT
41541387 C-AGTCATTTTAC
1 CGA-TCATTTTAC
41541399 ACGGACACTA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
26 2 0.06
27 30 0.83
28 4 0.11
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.36
Consensus pattern (26 bp):
CGATCATTTTACCTTCAGGGGTAGCT
Found at i:41545171 original size:34 final size:35
Alignment explanation
Indices: 41545133--41545201 Score: 131
Period size: 34 Copynumber: 2.0 Consensus size: 35
41545123 AATGAGGTTA
41545133 GTTTTTGAATGGTTTGTGTTGG-TTTTTTTAGTGC
1 GTTTTTGAATGGTTTGTGTTGGTTTTTTTTAGTGC
41545167 GTTTTTGAATGGTTTGTGTTGGTTTTTTTTAGTGC
1 GTTTTTGAATGGTTTGTGTTGGTTTTTTTTAGTGC
41545202 ACAAATTACA
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 22 0.65
35 12 0.35
ACGTcount: A:0.09, C:0.03, G:0.29, T:0.59
Consensus pattern (35 bp):
GTTTTTGAATGGTTTGTGTTGGTTTTTTTTAGTGC
Found at i:41546399 original size:137 final size:138
Alignment explanation
Indices: 41546167--41546502 Score: 498
Period size: 137 Copynumber: 2.4 Consensus size: 138
41546157 TAGAAAAATG
* * *
41546167 AATTATATTCTTTCCAAAAGAATATTAATTTCTC-TGTCTTTTACATTTTGACCTAAGTTAATTA
1 AATTATATTCTTTCCAAAAGAATATTAATTTC-CATGTCTTTTATATTTTGACCGAAATTAATTA
* * *
41546231 ATATAACTGTTTATAGTAAGAAATTCTGTAAAATATATACAATTAATATT-TTGTATGAAT-CAA
65 ATATAACTATTTATAGTAAGAAATTCGGTAAAATATATACAATTAATATTGTT-TATGAATAAAA
41546294 TTCATATATT
129 TTCATATATT
* *
41546304 AATTATATTCTTTCAAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACGGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
* *
41546369 TATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTGTTTATGAATAAAATT
66 TATAACTATTTATAGTAAGAAATTCGGTAAAATATATACAATTAATATTGTTTATGAATAAAATT
*
41546434 GATATATT
131 CATATATT
* * * *
41546442 AATTATATTATTTCCAAAAGAATATTATTTTCCATGCCTTTTATATTTTGACCGAATTTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAA
41546503 AATCACAAAA
Statistics
Matches: 179, Mismatches: 17, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
136 1 0.01
137 110 0.61
138 68 0.38
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.45
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAACTATTTATAGTAAGAAATTCGGTAAAATATATACAATTAATATTGTTTATGAATAAAATT
CATATATT
Found at i:41549623 original size:19 final size:19
Alignment explanation
Indices: 41549601--41549638 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
41549591 TTAATCATCC
41549601 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
41549620 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
41549639 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:41555951 original size:43 final size:43
Alignment explanation
Indices: 41555885--41555968 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
41555875 TGTCTTAGGC
41555885 CATAGAATTTCAAAGAAAGGAATTGAAGTCGACAAAGCAAAGG
1 CATAGAATTTCAAAGAAAGGAATTGAAGTCGACAAAGCAAAGG
* *
41555928 CATATAATTTCAAAGAAAGGAATTGAAGTTGACAAAGCAAA
1 CATAGAATTTCAAAGAAAGGAATTGAAGTCGACAAAGCAAA
41555969 TGTAGATATA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.50, C:0.11, G:0.20, T:0.19
Consensus pattern (43 bp):
CATAGAATTTCAAAGAAAGGAATTGAAGTCGACAAAGCAAAGG
Found at i:41559974 original size:23 final size:25
Alignment explanation
Indices: 41559918--41559974 Score: 66
Period size: 23 Copynumber: 2.4 Consensus size: 25
41559908 CTTGTTATTT
**
41559918 ATTTAATTTTCTTTAGGTCTTTAGGA
1 ATTTAA-TTTCTTTAGGTAATTAGGA
41559944 ATTT-ATTTCTTTA-GTAATTAGG-
1 ATTTAATTTCTTTAGGTAATTAGGA
41559966 ATTTAATTT
1 ATTTAATTT
41559975 TTGTAAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 4 0.14
23 11 0.39
24 8 0.29
25 1 0.04
26 4 0.14
ACGTcount: A:0.26, C:0.05, G:0.12, T:0.56
Consensus pattern (25 bp):
ATTTAATTTCTTTAGGTAATTAGGA
Found at i:41562130 original size:19 final size:19
Alignment explanation
Indices: 41562108--41562145 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
41562098 TCAATCATCC
41562108 CTCATCCCATCATT-TCTCA
1 CTCAT-CCATCATTCTCTCA
*
41562127 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
41562146 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.21, C:0.39, G:0.00, T:0.39
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:41565719 original size:43 final size:43
Alignment explanation
Indices: 41565658--41565740 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
41565648 ACATCACGAC
*
41565658 GAGGACCACTATGACATCGCGACGACTAGACATGATTCTTGAT
1 GAGGACCACTATGACATCGCGACAACTAGACATGATTCTTGAT
*
41565701 GAGGACCACTATGACATCGCGACAACTAGATATGATTCTT
1 GAGGACCACTATGACATCGCGACAACTAGACATGATTCTT
41565741 TCTCCATATA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.24
Consensus pattern (43 bp):
GAGGACCACTATGACATCGCGACAACTAGACATGATTCTTGAT
Found at i:41583901 original size:5 final size:5
Alignment explanation
Indices: 41583891--41583921 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
41583881 CTAAGCTTAC
41583891 TTGTT TTGTT TTGTT TTGTT TT-TT TTGTT TT
1 TTGTT TTGTT TTGTT TTGTT TTGTT TTGTT TT
41583922 CTGTAGTTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (5 bp):
TTGTT
Found at i:41585185 original size:27 final size:27
Alignment explanation
Indices: 41585146--41585288 Score: 109
Period size: 27 Copynumber: 5.3 Consensus size: 27
41585136 TAAAATAGGA
**
41585146 AAAATGAATGAAATACCCTCGATGGGT
1 AAAATGACCGAAATACCCTCGATGGGT
*
41585173 AAAATGACCGAAATACCCTCAATGGGT
1 AAAATGACCGAAATACCCTCGATGGGT
* *
41585200 AAAATGAAC-ATAATACCCCTCTA-GGGT
1 AAAATGACCGA-AATA-CCCTCGATGGGT
* *
41585227 AAAATGATCGTAATACCC-CTG-TAGGGT
1 AAAATGACCGAAATACCCTC-GAT-GGGT
* *
41585254 AAAATGACCGTAATGCCC-CTG-TAGGGT
1 AAAATGACCGAAATACCCTC-GAT-GGGT
41585281 AAAATGAC
1 AAAATGAC
41585289 TGTAATGCCT
Statistics
Matches: 100, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
25 1 0.01
26 4 0.04
27 89 0.89
28 6 0.06
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (27 bp):
AAAATGACCGAAATACCCTCGATGGGT
Found at i:41585254 original size:54 final size:53
Alignment explanation
Indices: 41585169--41585339 Score: 209
Period size: 54 Copynumber: 3.2 Consensus size: 53
41585159 TACCCTCGAT
* ** * * *
41585169 GGGTAAAATGACCGAAATA-CCCTCAATGGGTAAAATGAACATAATACCCCTCTA
1 GGGTAAAATGA-CGTAATACCCCTGTA-GGGTAAAATGAACGTAATGCCCCTGTA
*
41585223 GGGTAAAATGATCGTAATACCCCTGTAGGGTAAAATGACCGTAATGCCCCTGTA
1 GGGTAAAATGA-CGTAATACCCCTGTAGGGTAAAATGAACGTAATGCCCCTGTA
* * *
41585277 GGGTAAAATGACTGTAATGCCTCTGTAGGGTAAAATGAATGTAATGCCCCTGTA
1 GGGTAAAATGAC-GTAATACCCCTGTAGGGTAAAATGAACGTAATGCCCCTGTA
41585331 GGGTAAAAT
1 GGGTAAAAT
41585340 AACCATAATA
Statistics
Matches: 103, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 97 0.94
55 5 0.05
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (53 bp):
GGGTAAAATGACGTAATACCCCTGTAGGGTAAAATGAACGTAATGCCCCTGTA
Found at i:41585281 original size:81 final size:81
Alignment explanation
Indices: 41585146--41585354 Score: 230
Period size: 81 Copynumber: 2.6 Consensus size: 81
41585136 TAAAATAGGA
* *
41585146 AAAATGAATGAAATA-CCCTCG-ATGGGTAAAATGACCGAAATACCCTCAATGGGTAAAATGAAC
1 AAAATGAATGTAATACCCCT-GTA-GGGTAAAATGACCGTAATACCCTCAATGGGTAAAATG-AC
41585209 -ATAATACCCCTCTAGGGT
63 TATAATACCCCTCTAGGGT
* **
41585227 AAAATG-ATCGTAATACCCCTGTAGGGTAAAATGACCGTAATGCCC-CTGTAGGGTAAAATGACT
1 AAAATGAAT-GTAATACCCCTGTAGGGTAAAATGACCGTAATACCCTCAAT-GGGTAAAATGACT
* * * *
41585290 GTAATGCCTCTGTAGGGT
64 ATAATACCCCTCTAGGGT
* * *
41585308 AAAATGAATGTAATGCCCCTGTAGGGTAAAATAACCATAATACCCTC
1 AAAATGAATGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCTC
41585355 GAGGCCAAAT
Statistics
Matches: 108, Mismatches: 13, Indels: 13
0.81 0.10 0.10
Matches are distributed among these distances:
80 6 0.06
81 94 0.87
82 8 0.07
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (81 bp):
AAAATGAATGTAATACCCCTGTAGGGTAAAATGACCGTAATACCCTCAATGGGTAAAATGACTAT
AATACCCCTCTAGGGT
Found at i:41585293 original size:27 final size:27
Alignment explanation
Indices: 41585196--41585339 Score: 193
Period size: 27 Copynumber: 5.3 Consensus size: 27
41585186 TACCCTCAAT
* * *
41585196 GGGTAAAATGAAC-ATAATACCCCTCTA
1 GGGTAAAATG-ACTGTAATGCCCCTGTA
*
41585223 GGGTAAAATGA-TCGTAATACCCCTGTA
1 GGGTAAAATGACT-GTAATGCCCCTGTA
*
41585250 GGGTAAAATGACCGTAATGCCCCTGTA
1 GGGTAAAATGACTGTAATGCCCCTGTA
*
41585277 GGGTAAAATGACTGTAATGCCTCTGTA
1 GGGTAAAATGACTGTAATGCCCCTGTA
*
41585304 GGGTAAAATGAATGTAATGCCCCTGTA
1 GGGTAAAATGACTGTAATGCCCCTGTA
41585331 GGGTAAAAT
1 GGGTAAAAT
41585340 AACCATAATA
Statistics
Matches: 106, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
26 1 0.01
27 105 0.99
ACGTcount: A:0.34, C:0.17, G:0.24, T:0.25
Consensus pattern (27 bp):
GGGTAAAATGACTGTAATGCCCCTGTA
Found at i:41585387 original size:23 final size:24
Alignment explanation
Indices: 41585361--41585427 Score: 82
Period size: 23 Copynumber: 2.8 Consensus size: 24
41585351 CCTCGAGGCC
41585361 AAATGATTGATTTGTCTGTG-GTT
1 AAATGATTGATTTGTCTGTGTGTT
* * *
41585384 AAATGACTAATTTGTCTGTGTTTT
1 AAATGATTGATTTGTCTGTGTGTT
* *
41585408 ATATGATTGATTTGTATGTG
1 AAATGATTGATTTGTCTGTG
41585428 ATTTGAATGA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
23 18 0.50
24 18 0.50
ACGTcount: A:0.24, C:0.04, G:0.22, T:0.49
Consensus pattern (24 bp):
AAATGATTGATTTGTCTGTGTGTT
Found at i:41585437 original size:24 final size:23
Alignment explanation
Indices: 41585361--41585443 Score: 85
Period size: 24 Copynumber: 3.5 Consensus size: 23
41585351 CCTCGAGGCC
* *
41585361 AAATGATTGATTTGTCTGTGGTT
1 AAATGACTGATTTGTCTGTGTTT
*
41585384 AAATGACTAATTTGTCTGTGTTTT
1 AAATGACTGATTTGTCTGTG-TTT
* * *
41585408 ATATGATTGATTTGTATGTGATTT
1 AAATGACTGATTTGTCTGTG-TTT
*
41585432 GAATGACTGATT
1 AAATGACTGATT
41585444 CTGAGCATGG
Statistics
Matches: 48, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
23 18 0.38
24 30 0.62
ACGTcount: A:0.25, C:0.05, G:0.22, T:0.48
Consensus pattern (23 bp):
AAATGACTGATTTGTCTGTGTTT
Found at i:41585555 original size:27 final size:27
Alignment explanation
Indices: 41585506--41585571 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
41585496 TATGGAGGAA
41585506 ATACTA-TACTGGTGGCTCTGCCACA-
1 ATACTATTACTGGTGGCTCTGCCACAT
* *
41585531 ATCACTGTTACTGGTGTCT-TAGCCACAT
1 AT-ACTATTACTGGTGGCTCT-GCCACAT
41585559 ATACTATTACTGG
1 ATACTATTACTGG
41585572 CAGCTTTGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
25 2 0.06
26 4 0.12
27 26 0.76
28 2 0.06
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (27 bp):
ATACTATTACTGGTGGCTCTGCCACAT
Found at i:41585597 original size:26 final size:26
Alignment explanation
Indices: 41585559--41585624 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
41585549 TTAGCCACAT
* * * *
41585559 ATACTATTACTGGCAGCTTTGTTGGG
1 ATACTACTGCTGGCAGCTTTGCTGCG
41585585 ATACTACTGCTGGCAGCTTTGCTGCG
1 ATACTACTGCTGGCAGCTTTGCTGCG
* *
41585611 ATGCTACTGATGGC
1 ATACTACTGCTGGC
41585625 TTTGTCCCGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.18, C:0.21, G:0.27, T:0.33
Consensus pattern (26 bp):
ATACTACTGCTGGCAGCTTTGCTGCG
Found at i:41585670 original size:32 final size:32
Alignment explanation
Indices: 41585615--41585817 Score: 248
Period size: 32 Copynumber: 6.4 Consensus size: 32
41585605 GCTGCGATGC
*
41585615 TACTGATGGCTTTGTCCCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * * * *
41585647 TATTGATGG-TTGTGTGCCAATCATATCACTGC
1 TACTGATGGCTT-TGTGCCGATCATATTACCGT
41585679 TACTGATGGCTTTGTGCCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
*
41585711 TACTGATGGCTTTGTACCGATCATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* * * * *
41585743 TACTGATGGCTGTGTGCCGGTCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
* *
41585775 TACTGATGGCTTTGTGCCAATCATATTACTG-
1 TACTGATGGCTTTGTGCCGATCATATTACCGT
*
41585806 TACTTATGGCTT
1 TACTGATGGCTT
41585818 GTAGCCATTC
Statistics
Matches: 146, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
31 13 0.09
32 131 0.90
33 2 0.01
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCGATCATATTACCGT
Found at i:41585779 original size:96 final size:95
Alignment explanation
Indices: 41585615--41585817 Score: 325
Period size: 96 Copynumber: 2.1 Consensus size: 95
41585605 GCTGCGATGC
* * *
41585615 TACTGATGGCTTTGTCCCGATCATATTACCGTTATTGATGGTTGTGTGCCAATCATATCACTGCT
1 TACTGATGGCTTTGTACCGATCATATTACCGTTACTGATGGCTGTGTGCCAATCATATCACTGCT
*
41585680 ACTGATGGCTTTGTGCCGATCATATTACCG
66 ACTGATGGCTTTGTGCCAATCATATTACCG
**
41585710 TTACTGATGGCTTTGTACCGATCATATTACCGTTACTGATGGCTGTGTGCCGGTCATATCACTGC
1 -TACTGATGGCTTTGTACCGATCATATTACCGTTACTGATGGCTGTGTGCCAATCATATCACTGC
*
41585775 TACTGATGGCTTTGTGCCAATCATATTACTG
65 TACTGATGGCTTTGTGCCAATCATATTACCG
*
41585806 TACTTATGGCTT
1 TACTGATGGCTT
41585818 GTAGCCATTC
Statistics
Matches: 99, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
95 11 0.11
96 88 0.89
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (95 bp):
TACTGATGGCTTTGTACCGATCATATTACCGTTACTGATGGCTGTGTGCCAATCATATCACTGCT
ACTGATGGCTTTGTGCCAATCATATTACCG
Found at i:41585834 original size:22 final size:22
Alignment explanation
Indices: 41585809--41585855 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
41585799 ATTACTGTAC
* * *
41585809 TTATGGCTTGTAGCCATTCTGT
1 TTATAGCTTATAGCCATCCTGT
*
41585831 TTATAGCTTATAGCTATCCTGT
1 TTATAGCTTATAGCCATCCTGT
41585853 TTA
1 TTA
41585856 CGACTCAGCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (22 bp):
TTATAGCTTATAGCCATCCTGT
Found at i:41587949 original size:3 final size:3
Alignment explanation
Indices: 41587941--41587975 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
41587931 AGTTTTGCAT
*
41587941 TTG TTG TTG TTG TTT TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
41587976 TCTATCGACA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.29, T:0.71
Consensus pattern (3 bp):
TTG
Found at i:41593950 original size:28 final size:28
Alignment explanation
Indices: 41593902--41594018 Score: 128
Period size: 28 Copynumber: 4.2 Consensus size: 28
41593892 TTGTTCAGTA
* * *
41593902 ACAGT-ACAGTGTGGGCTTTAGCCCAAT
1 ACAGTAACAATGTGAGCCTTAGCCCAAT
41593929 ACAGTAACAATGTGAGCCTTAGCCCAAT
1 ACAGTAACAATGTGAGCCTTAGCCCAAT
* * * *
41593957 ACATTAATAACGTGGGCCTTAGCCCAAT
1 ACAGTAACAATGTGAGCCTTAGCCCAAT
* * * *
41593985 ATAGTAACAATGTAAGCGTTAGCCCGAT
1 ACAGTAACAATGTGAGCCTTAGCCCAAT
41594013 ACAGTA
1 ACAGTA
41594019 TCAGTACAAT
Statistics
Matches: 73, Mismatches: 16, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
27 5 0.07
28 68 0.93
ACGTcount: A:0.33, C:0.22, G:0.21, T:0.24
Consensus pattern (28 bp):
ACAGTAACAATGTGAGCCTTAGCCCAAT
Found at i:41594404 original size:27 final size:27
Alignment explanation
Indices: 41594374--41594471 Score: 83
Period size: 27 Copynumber: 3.6 Consensus size: 27
41594364 ATCTCCTAGA
*
41594374 GGTATAACAGTCATTTTACCCTATGGG
1 GGTATATCAGTCATTTTACCCTATGGG
* ** * *
41594401 GGTATTTTGGTCATTTTACCTTATGAG
1 GGTATATCAGTCATTTTACCCTATGGG
* *
41594428 GGTA-ATTCAGTCAATTTACCCTGTAGGG
1 GGTATA-TCAGTCATTTTACCCTAT-GGG
41594456 GGTA-ATTCAGTCATTT
1 GGTATA-TCAGTCATTT
41594472 ATTGACTCTC
Statistics
Matches: 55, Mismatches: 14, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
27 38 0.69
28 17 0.31
ACGTcount: A:0.23, C:0.15, G:0.22, T:0.39
Consensus pattern (27 bp):
GGTATATCAGTCATTTTACCCTATGGG
Found at i:41601277 original size:114 final size:115
Alignment explanation
Indices: 41601066--41601294 Score: 451
Period size: 114 Copynumber: 2.0 Consensus size: 115
41601056 GCTTCAACCA
41601066 TTAAAGAAAATAAAAGTTTCATCATGTAATCCCAACCCGATAAGATTTAGCTAATGGGTTGGCAC
1 TTAAAGAAAATAAAAGTTTCATCATGTAATCCCAACCCGATAAGATTTAGCTAATGGGTTGGCAC
41601131 AAAGAATTCAAAACCAAAATAACATCTAACACCATTTTCATAATTCATGG
66 AAAGAATTCAAAACCAAAATAACATCTAACACCATTTTCATAATTCATGG
41601181 TTAAAGAAAA-AAAAGTTTCATCATGTAATCCCAACCCGATAAGATTTAGCTAATGGGTTGGCAC
1 TTAAAGAAAATAAAAGTTTCATCATGTAATCCCAACCCGATAAGATTTAGCTAATGGGTTGGCAC
41601245 AAAGAATTCAAAACCAAAATAACATCTAACACCATTTTCATAATTCATGG
66 AAAGAATTCAAAACCAAAATAACATCTAACACCATTTTCATAATTCATGG
41601295 AAGAAAAAAG
Statistics
Matches: 114, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
114 104 0.91
115 10 0.09
ACGTcount: A:0.43, C:0.18, G:0.12, T:0.27
Consensus pattern (115 bp):
TTAAAGAAAATAAAAGTTTCATCATGTAATCCCAACCCGATAAGATTTAGCTAATGGGTTGGCAC
AAAGAATTCAAAACCAAAATAACATCTAACACCATTTTCATAATTCATGG
Found at i:41603628 original size:23 final size:23
Alignment explanation
Indices: 41603602--41603723 Score: 147
Period size: 23 Copynumber: 5.3 Consensus size: 23
41603592 ATAAGTGCCA
41603602 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
41603625 CACTGATACGTAGCCGTAGCAAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
41603648 CACTGAAATGTAGGCGAAGTTAC
1 CACTGATATGTAGCCGAAGCTAC
41603671 CACTGATATGTAGCC-ATAGCTAC
1 CACTGATATGTAGCCGA-AGCTAC
* * *
41603694 CATTAAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
41603717 CACTGAT
1 CACTGAT
41603724 CAATAACACT
Statistics
Matches: 79, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
22 1 0.01
23 77 0.97
24 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:41603672 original size:46 final size:46
Alignment explanation
Indices: 41603602--41603723 Score: 172
Period size: 46 Copynumber: 2.7 Consensus size: 46
41603592 ATAAGTGCCA
* *
41603602 CACTGATATGTAGCCGAAGCTACCACTGATACGTAGCCGTAGCAAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATACGTAGCCATAGCAAC
* * * *
41603648 CACTGAAATGTAGGCGAAGTTACCACTGATATGTAGCCATAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATACGTAGCCATAGCAAC
* *
41603694 CATTAAAATGTAGCCGAAGCTACCACTGAT
1 CACTGAAATGTAGCCGAAGCTACCACTGAT
41603724 CAATAACACT
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 66 1.00
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTGATACGTAGCCATAGCAAC
Found at i:41605019 original size:18 final size:17
Alignment explanation
Indices: 41604993--41605031 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
41604983 ATTTTCCTTC
41604993 CACATTC-AATATTAATT
1 CACATTCAAATA-TAATT
41605010 CACATATCAAATATAATT
1 CACAT-TCAAATATAATT
41605028 CACA
1 CACA
41605032 ATTTATAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 5 0.25
18 11 0.55
19 4 0.20
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (17 bp):
CACATTCAAATATAATT
Found at i:41614235 original size:39 final size:39
Alignment explanation
Indices: 41614097--41614237 Score: 230
Period size: 39 Copynumber: 3.6 Consensus size: 39
41614087 CATATTCACC
* * *
41614097 TTTAAGCGTATATCACATTACACATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
41614136 TTTAAGCATATATCACAATACGT-ATATAATCACATAACA
1 TTTAAGCATATATCACAATAC-TCATATAATCACATAACA
41614175 TTTAAGCATATATCACAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
*
41614214 TTTAAGTATATATCACAATACTCA
1 TTTAAGCATATATCACAATACTCA
41614238 AAAACATGTT
Statistics
Matches: 96, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
38 1 0.01
39 95 0.99
ACGTcount: A:0.45, C:0.19, G:0.04, T:0.32
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCATATAATCACATAACA
Found at i:41620943 original size:51 final size:50
Alignment explanation
Indices: 41620770--41621104 Score: 341
Period size: 51 Copynumber: 6.6 Consensus size: 50
41620760 TCACTCGATA
* *
41620770 CACGTAGTAGCCTTCAGATAGTACTACACACGTGATCAAG-TTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGATTTT-CGGTT
* * * * * *
41620820 CATGTACTAGCCTTCAGATTGTACTACACATGTGATCAAG-TTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGATTTT-CGGTT
* * *
41620870 CACGTAGTAGCCATCACATAGTACCACACACGTGACCAAAGATTTTCGGTA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAGATTTTCGGTT
* * * ** *
41620921 CACATAGTAGCCTTCACTTAGTACTACACATGTGACCATCATTTATCGATT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGATTT-TCGGTT
* * * *
41620972 CACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACC-AAGATTTTCGGTT
* * * * ** *
41621023 CACATTGTAGCCTTCACTTAGTACTACACATGTGACCATTATTTATCGATT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGATTT-TCGGTT
*
41621074 CACGTAGTAGCCTTCACACAGTACTACACAC
1 CACGTAGTAGCCTTCACATAGTACTACACAC
41621105 NNNNNNNNNN
Statistics
Matches: 232, Mismatches: 48, Indels: 9
0.80 0.17 0.03
Matches are distributed among these distances:
50 83 0.36
51 142 0.61
52 7 0.03
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (50 bp):
CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGATTTTCGGTT
Found at i:41620995 original size:102 final size:101
Alignment explanation
Indices: 41620764--41621104 Score: 445
Period size: 102 Copynumber: 3.4 Consensus size: 101
41620754 CTTTTATCAC
* * * * * ** *
41620764 TCGATACACGTAGTAGCCTTCAGATAGTACTACACACGTGATC-AAGTTTTACGGTTCATGTACT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGTTTT-CGGTACACATAGT
* * ***
41620828 AGCCTTCAGATT-GTACTACACATGTGATCAAGTTTTA
65 AGCCTTCA-CTTAGTACTACACATGTGACCATCATTTA
* * * *
41620865 -CGGTTCACGTAGTAGCCATCACATAGTACCACACACGTGACCAAAGATTTTCGGTACACATAGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAG-TTTTCGGTACACATAGT
41620929 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
65 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
* *
41620966 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAG-TTTTCGGTACACATAGT
*
41621031 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
65 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
41621068 TCGATTCACGTAGTAGCCTTCACACAGTACTACACAC
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACAC
41621105 NNNNNNNNNN
Statistics
Matches: 213, Mismatches: 23, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
100 38 0.18
101 41 0.19
102 134 0.63
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (101 bp):
TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGTTTTCGGTACACATAGTA
GCCTTCACTTAGTACTACACATGTGACCATCATTTA
Found at i:41623689 original size:50 final size:51
Alignment explanation
Indices: 41623618--41623726 Score: 184
Period size: 50 Copynumber: 2.2 Consensus size: 51
41623608 CATTTCAATT
* *
41623618 CTTTTCATGATTTCATAACATAGTTCATTTGAATACATACCATTCCTTTCC
1 CTTTTCATAATTTCATAACATAGTTCATTTGAACACATACCATTCCTTTCC
*
41623669 CTTTTC-TAATTTCATGACATAGTTCATTTGAACACATACCATTCCTTTCC
1 CTTTTCATAATTTCATAACATAGTTCATTTGAACACATACCATTCCTTTCC
41623719 CTTTTCAT
1 CTTTTCAT
41623727 GCCTGTTGAA
Statistics
Matches: 54, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
50 47 0.87
51 7 0.13
ACGTcount: A:0.26, C:0.25, G:0.06, T:0.44
Consensus pattern (51 bp):
CTTTTCATAATTTCATAACATAGTTCATTTGAACACATACCATTCCTTTCC
Found at i:41635445 original size:275 final size:275
Alignment explanation
Indices: 41634954--41635499 Score: 950
Period size: 275 Copynumber: 2.0 Consensus size: 275
41634944 TAGATAGCTT
*
41634954 CTCACTCGAGCCATAAAATGGGTCTACTCACACAAGCTGACGGTCAGAATGTAAGCTACACGATG
1 CTCACTCGAGCCATAAAATGGGTCTACTCACACAAGCTGACGGTCAGAATGTAAGCTACACAATG
* * *
41635019 TCGCTCACACAAGCTGACAAGCTTCCGCAACAAATGCAGGACCTCAACCATCAGTAGGACATTCA
66 TCACTCACACAAGCTGACAAGCTTCCGCAACAAATGCAAGACCTCAAACATCAGTAGGACATTCA
41635084 AGACCAGCACCCGAAACATGGTAACCCTAGTGACATGTCAGTTGTATCCTATATATTCCTAAGGT
131 AGACCAGCACCCGAAACATGGTAACCCTAGTGACATGTCAGTTGTATCCTATATATTCCTAAGGT
* * * *
41635149 TCACATGGGGTTTAATATTCGTCGTAACTTTGTTGGATTTCCAACAATCGTTTACATGATAAATA
196 TCACACGGGGTTCAATATTCGTCGTAACGTCGTTGGATTTCCAACAATCGTTTACATGATAAATA
41635214 ACACAATAATAGTTG
261 ACACAATAATAGTTG
*
41635229 CTCACTCGAGCCATAAAATGGGTCTACTCACACAAGCTGACGGTCGGAATGTAAGCTACACAATG
1 CTCACTCGAGCCATAAAATGGGTCTACTCACACAAGCTGACGGTCAGAATGTAAGCTACACAATG
* *
41635294 TCACTCACACAAGCTGACAAG-TATCTGCAACAAATGCAAGACCTCAAATATCAGTAGGACATTC
66 TCACTCACACAAGCTGACAAGCT-TCCGCAACAAATGCAAGACCTCAAACATCAGTAGGACATTC
*
41635358 AAGACCAGCACCCGAAACATGGTAACCCTAGTGACATGTCATTTGTATCCTATATATTCCTAAGG
130 AAGACCAGCACCCGAAACATGGTAACCCTAGTGACATGTCAGTTGTATCCTATATATTCCTAAGG
* *
41635423 TTCATACGGGGTTCAATATTCGTCGTAACGTCGTTGGATTTCCAACAATCGTTTCCATGATAAAT
195 TTCACACGGGGTTCAATATTCGTCGTAACGTCGTTGGATTTCCAACAATCGTTTACATGATAAAT
41635488 AACACAATAATA
260 AACACAATAATA
41635500 TATATATATA
Statistics
Matches: 256, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
274 1 0.00
275 255 1.00
ACGTcount: A:0.33, C:0.24, G:0.18, T:0.25
Consensus pattern (275 bp):
CTCACTCGAGCCATAAAATGGGTCTACTCACACAAGCTGACGGTCAGAATGTAAGCTACACAATG
TCACTCACACAAGCTGACAAGCTTCCGCAACAAATGCAAGACCTCAAACATCAGTAGGACATTCA
AGACCAGCACCCGAAACATGGTAACCCTAGTGACATGTCAGTTGTATCCTATATATTCCTAAGGT
TCACACGGGGTTCAATATTCGTCGTAACGTCGTTGGATTTCCAACAATCGTTTACATGATAAATA
ACACAATAATAGTTG
Found at i:41651915 original size:68 final size:68
Alignment explanation
Indices: 41651747--41652022 Score: 362
Period size: 68 Copynumber: 4.1 Consensus size: 68
41651737 CACCTCAATA
* * * * *
41651747 GGGTTATAAGGTGTAAGACAATAGCTCGACTATGACAACTAATAGAGTCCTCTAGGACATTAAAC
1 GGGTTATAAGGTGTAAGACCATAGCTCGAATATGACAACCAATAGAGTCCACCAGGACATTAAAC
41651812 A--
66 ATG
* *
41651813 -GGTTATAAGGTGTAAGACCATAGCTCGACTATGACAACCAATAGAGTCCACCAGGACATTAAAG
1 GGGTTATAAGGTGTAAGACCATAGCTCGAATATGACAACCAATAGAGTCCACCAGGACATTAAAC
41651877 ATG
66 ATG
* * *
41651880 GGGTTATAAGGTGAAAGATCATACCTCGAATATGACAACCAATAGAGTCCACCAGGACATTAAAC
1 GGGTTATAAGGTGTAAGACCATAGCTCGAATATGACAACCAATAGAGTCCACCAGGACATTAAAC
41651945 ATG
66 ATG
* * * * ** *
41651948 GAGTTATAAGGTGTAAGACCATAACTC-AACTATGCCAACTAATAGAGTCTTCCAAGACATTAAA
1 GGGTTATAAGGTGTAAGACCATAGCTCGAA-TATGACAACCAATAGAGTCCACCAGGACATTAAA
41652012 CATG
65 CATG
41652016 GGGTTAT
1 GGGTTAT
41652023 TAATTTGTCA
Statistics
Matches: 186, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
65 60 0.32
67 2 0.01
68 124 0.67
ACGTcount: A:0.38, C:0.18, G:0.21, T:0.23
Consensus pattern (68 bp):
GGGTTATAAGGTGTAAGACCATAGCTCGAATATGACAACCAATAGAGTCCACCAGGACATTAAAC
ATG
Found at i:41652112 original size:11 final size:11
Alignment explanation
Indices: 41652088--41652120 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
41652078 TATTTTCTAG
*
41652088 TGTTTTTA-TA
1 TGTTTTTATTT
41652098 TGTTTTTATTT
1 TGTTTTTATTT
41652109 TGTTTTTATTT
1 TGTTTTTATTT
41652120 T
1 T
41652121 TTTAGTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 8 0.38
11 13 0.62
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.79
Consensus pattern (11 bp):
TGTTTTTATTT
Found at i:41652130 original size:21 final size:21
Alignment explanation
Indices: 41652088--41652129 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
41652078 TATTTTCTAG
41652088 TGTTTTTATATGTTTTTATTT
1 TGTTTTTATATGTTTTTATTT
41652109 TGTTTTTAT-T-TTTTTAGTTT
1 TGTTTTTATATGTTTTTA-TTT
41652129 T
1 T
41652130 TATTTGCTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 5 0.25
21 9 0.45
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.79
Consensus pattern (21 bp):
TGTTTTTATATGTTTTTATTT
Found at i:41653111 original size:118 final size:118
Alignment explanation
Indices: 41652903--41653153 Score: 502
Period size: 118 Copynumber: 2.1 Consensus size: 118
41652893 TCAAGATAGG
41652903 TGAGACCAAGAGGGTGTCCCGTCGAGGATAACTTGTACCAAGCGATAAGATAGAGAGAGTATTCG
1 TGAGACCAAGAGGGTGTCCCGTCGAGGATAACTTGTACCAAGCGATAAGATAGAGAGAGTATTCG
41652968 TATGCCTAGGAAGAGACTGAAAGGGTGACTTAGGTGGTAATCTTTAGTGAAGA
66 TATGCCTAGGAAGAGACTGAAAGGGTGACTTAGGTGGTAATCTTTAGTGAAGA
41653021 TGAGACCAAGAGGGTGTCCCGTCGAGGATAACTTGTACCAAGCGATAAGATAGAGAGAGTATTCG
1 TGAGACCAAGAGGGTGTCCCGTCGAGGATAACTTGTACCAAGCGATAAGATAGAGAGAGTATTCG
41653086 TATGCCTAGGAAGAGACTGAAAGGGTGACTTAGGTGGTAATCTTTAGTGAAGA
66 TATGCCTAGGAAGAGACTGAAAGGGTGACTTAGGTGGTAATCTTTAGTGAAGA
41653139 TGAGACCAAGAGGGT
1 TGAGACCAAGAGGGT
41653154 ATTCTTAGCT
Statistics
Matches: 133, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
118 133 1.00
ACGTcount: A:0.32, C:0.14, G:0.32, T:0.22
Consensus pattern (118 bp):
TGAGACCAAGAGGGTGTCCCGTCGAGGATAACTTGTACCAAGCGATAAGATAGAGAGAGTATTCG
TATGCCTAGGAAGAGACTGAAAGGGTGACTTAGGTGGTAATCTTTAGTGAAGA
Found at i:41657854 original size:19 final size:20
Alignment explanation
Indices: 41657811--41657863 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
41657801 AAAAAAATCC
* *
41657811 AAATAATTTTCAAAATTTGA
1 AAATAATTTTTAAAATTTCA
41657831 AAATAATTTTTAAAA-TTCA
1 AAATAATTTTTAAAATTTCA
*
41657850 AAAT-ATTTATAAAA
1 AAATAATTTTTAAAA
41657864 ATTATAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
18 9 0.30
19 7 0.23
20 14 0.47
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.40
Consensus pattern (20 bp):
AAATAATTTTTAAAATTTCA
Found at i:41657901 original size:18 final size:19
Alignment explanation
Indices: 41657878--41657915 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
41657868 TAAAATTTGT
41657878 ATTTTTAAAAAAT-TATAA
1 ATTTTTAAAAAATATATAA
*
41657896 ATTTTTTAAAAATATATAA
1 ATTTTTAAAAAATATATAA
41657915 A
1 A
41657916 AAGTTGAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTTTTAAAAAATATATAA
Found at i:41658257 original size:21 final size:21
Alignment explanation
Indices: 41658231--41658270 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
41658221 TTGATTTCTA
41658231 AAGTTAAAA-GTCAAAACTATC
1 AAGTTAAAATG-CAAAACTATC
41658252 AAGTTAAAATGCAAAACTA
1 AAGTTAAAATGCAAAACTA
41658271 CGTCGTTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.55, C:0.12, G:0.10, T:0.23
Consensus pattern (21 bp):
AAGTTAAAATGCAAAACTATC
Found at i:41658456 original size:26 final size:26
Alignment explanation
Indices: 41658426--41658477 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
41658416 GAAATAATAA
41658426 GATTCGTTAATTCGACTTGAAATTTT
1 GATTCGTTAATTCGACTTGAAATTTT
41658452 GATTCGTTAATTCGACTTGAAATTTT
1 GATTCGTTAATTCGACTTGAAATTTT
41658478 TTTACTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (26 bp):
GATTCGTTAATTCGACTTGAAATTTT
Found at i:41660893 original size:28 final size:28
Alignment explanation
Indices: 41660853--41660912 Score: 95
Period size: 28 Copynumber: 2.1 Consensus size: 28
41660843 TGGAAATTCC
*
41660853 ATTAAGTTATTTTA-GACTAATTCATTTA
1 ATTAAGTTATTTTAGGA-TAATTAATTTA
41660881 ATTAAGTTATTTTAGGATAATTAATTTA
1 ATTAAGTTATTTTAGGATAATTAATTTA
41660909 ATTA
1 ATTA
41660913 GTTTAATAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
28 28 0.93
29 2 0.07
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.50
Consensus pattern (28 bp):
ATTAAGTTATTTTAGGATAATTAATTTA
Found at i:41675153 original size:27 final size:27
Alignment explanation
Indices: 41675105--41675168 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 27
41675095 CTATGAATTG
*
41675105 GTATGCTCTCTCTCGAGTTGTAAATCA
1 GTATGCTCTCTCTCGAGCTGTAAATCA
* * *
41675132 GTATGTTCTCTTTTGAGCTGTAAATC-
1 GTATGCTCTCTCTCGAGCTGTAAATCA
41675158 GATATGCTCTC
1 G-TATGCTCTC
41675169 ACAAGTTGTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
26 1 0.03
27 30 0.97
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (27 bp):
GTATGCTCTCTCTCGAGCTGTAAATCA
Found at i:41683899 original size:25 final size:25
Alignment explanation
Indices: 41683860--41683955 Score: 95
Period size: 25 Copynumber: 3.8 Consensus size: 25
41683850 CCAACCCAAA
41683860 GCTCATGAGAGCATACCGATTTATAG
1 GCTCATGAGAGCATACCGATTTAT-G
* **
41683886 G-TCCTGAGAGCATATTGATTTATG
1 GCTCATGAGAGCATACCGATTTATG
* * **
41683910 GCTCATGAGAGCATACCAATCTACA
1 GCTCATGAGAGCATACCGATTTATG
* *
41683935 GCTCAAGTGAGCATACCGATT
1 GCTCATGAGAGCATACCGATT
41683956 CACGTTTCGA
Statistics
Matches: 55, Mismatches: 14, Indels: 3
0.76 0.19 0.04
Matches are distributed among these distances:
24 2 0.04
25 52 0.95
26 1 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (25 bp):
GCTCATGAGAGCATACCGATTTATG
Found at i:41687114 original size:52 final size:52
Alignment explanation
Indices: 41687036--41687136 Score: 157
Period size: 52 Copynumber: 1.9 Consensus size: 52
41687026 CATGCACATA
* * *
41687036 TTTGAGCTTCAACCGAGCTACAAATGAGGTCTTAAGCTGCTGTCTATTATTG
1 TTTGAGCTTCAACCGAACTACAAATGAGATCTTAAGCTGCTGTCCATTATTG
* *
41687088 TTTGAGCTTCAACCGAACTAGAAATGAGATCTTAAGCTGTTGTCCATTA
1 TTTGAGCTTCAACCGAACTACAAATGAGATCTTAAGCTGCTGTCCATTA
41687137 CGTTTCCTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.34
Consensus pattern (52 bp):
TTTGAGCTTCAACCGAACTACAAATGAGATCTTAAGCTGCTGTCCATTATTG
Found at i:41696562 original size:17 final size:18
Alignment explanation
Indices: 41696542--41696577 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
41696532 GAAAAAGAAA
*
41696542 GGAAAA-GAATAAAGTTT
1 GGAAAATGAAAAAAGTTT
41696559 GGAAAATGAAAAAAGTTT
1 GGAAAATGAAAAAAGTTT
41696577 G
1 G
41696578 CTTCCGCTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.53, C:0.00, G:0.25, T:0.22
Consensus pattern (18 bp):
GGAAAATGAAAAAAGTTT
Found at i:41700262 original size:24 final size:23
Alignment explanation
Indices: 41700209--41700262 Score: 63
Period size: 24 Copynumber: 2.3 Consensus size: 23
41700199 CCTTCTACTA
41700209 GCCTTTATGCTGTATTCTGATAT
1 GCCTTTATGCTGTATTCTGATAT
* * *
41700232 GAACTTTATGGTGTATTTTGATATT
1 G-CCTTTATGCTGTATTCTGATA-T
41700257 GCCTTT
1 GCCTTT
41700263 GTGGCATTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
23 1 0.04
24 22 0.88
25 2 0.08
ACGTcount: A:0.19, C:0.13, G:0.19, T:0.50
Consensus pattern (23 bp):
GCCTTTATGCTGTATTCTGATAT
Found at i:41700285 original size:20 final size:20
Alignment explanation
Indices: 41700257--41700328 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
41700247 TTTTGATATT
* *
41700257 GCCTTTGTGGCATTCTCTTA
1 GCCTCTGTGGCATTCTGTTA
* * *
41700277 GCCTCTGTGGTATTTTGATA
1 GCCTCTGTGGCATTCTGTTA
*
41700297 TGACCTTTGTGGCATTCTGTTA
1 -G-CCTCTGTGGCATTCTGTTA
*
41700319 ACCTCTGTGG
1 GCCTCTGTGG
41700329 TAATTCTGAT
Statistics
Matches: 39, Mismatches: 11, Indels: 4
0.72 0.20 0.07
Matches are distributed among these distances:
20 23 0.59
21 1 0.03
22 15 0.38
ACGTcount: A:0.12, C:0.21, G:0.24, T:0.43
Consensus pattern (20 bp):
GCCTCTGTGGCATTCTGTTA
Found at i:41700291 original size:42 final size:42
Alignment explanation
Indices: 41700244--41700357 Score: 158
Period size: 42 Copynumber: 2.7 Consensus size: 42
41700234 ACTTTATGGT
*
41700244 GTATTTTGATATTGCCTTTGTGGCATTCTCTTAGCCTCTGTG
1 GTATTTTGATATTGCCTTTGTGGCATTCTCTTAACCTCTGTG
*
41700286 GTATTTTGATA-TGACCTTTGTGGCATTCTGTTAACCTCTGTG
1 GTATTTTGATATTG-CCTTTGTGGCATTCTCTTAACCTCTGTG
* * *
41700328 GTAATTCTGATATGGCCTTTATGGCATTCT
1 GT-ATTTTGATATTGCCTTTGTGGCATTCT
41700358 ACTAACTTTT
Statistics
Matches: 64, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
41 2 0.03
42 39 0.61
43 22 0.34
44 1 0.02
ACGTcount: A:0.16, C:0.18, G:0.21, T:0.46
Consensus pattern (42 bp):
GTATTTTGATATTGCCTTTGTGGCATTCTCTTAACCTCTGTG
Found at i:41700371 original size:43 final size:41
Alignment explanation
Indices: 41700244--41700372 Score: 141
Period size: 42 Copynumber: 3.0 Consensus size: 41
41700234 ACTTTATGGT
* * *
41700244 GTATTTTGATATTGCCTTTGTGGCATTCTCTTAGCCTCTGTG
1 GTATTCTGATATGGCCTTTGTGGCATTCTC-TAACCTCTGTG
* * *
41700286 GTATTTTGATATGACCTTTGTGGCATTCTGTTAACCTCTGTG
1 GTATTCTGATATGGCCTTTGTGGCATTCT-CTAACCTCTGTG
* * *
41700328 GTAATTCTGATATGGCCTTTATGGCATTCTACTAACTTTTGTG
1 GT-ATTCTGATATGGCCTTTGTGGCATTCT-CTAACCTCTGTG
41700371 GT
1 GT
41700373 GTAATTTGTA
Statistics
Matches: 74, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
42 39 0.53
43 35 0.47
ACGTcount: A:0.16, C:0.17, G:0.21, T:0.46
Consensus pattern (41 bp):
GTATTCTGATATGGCCTTTGTGGCATTCTCTAACCTCTGTG
Found at i:41714300 original size:28 final size:28
Alignment explanation
Indices: 41714247--41714302 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
41714237 ATATAGTTTT
* *
41714247 TATATTATTTATAAAGGTTATAATAATA
1 TATAGTATTTATAAAGCTTATAATAATA
*
41714275 TATAGTATATTATAAA-CTTATTATAATA
1 TATAGTAT-TTATAAAGCTTATAATAATA
41714303 AAAGACAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 17 0.71
29 7 0.29
ACGTcount: A:0.46, C:0.02, G:0.05, T:0.46
Consensus pattern (28 bp):
TATAGTATTTATAAAGCTTATAATAATA
Found at i:41715242 original size:41 final size:43
Alignment explanation
Indices: 41715191--41715307 Score: 139
Period size: 41 Copynumber: 2.8 Consensus size: 43
41715181 CGATTTGTGT
* *
41715191 TTACATGTAAGACCATGTCTGGGACATTGGCATCG-TATTTAA
1 TTACAGGTAAGACCATGTCTGGGACATTGGCATCGATATGTAA
* * * *
41715233 TT-CAGGTAAGACCCTGTCTGGGACAGTGGCAACGATATGTGA
1 TTACAGGTAAGACCATGTCTGGGACATTGGCATCGATATGTAA
* * *
41715275 TTACATGTAAGACCACGTCTGGGACGTTGGCAT
1 TTACAGGTAAGACCATGTCTGGGACATTGGCAT
41715308 TGTACGAGCC
Statistics
Matches: 61, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
41 28 0.46
42 9 0.15
43 24 0.39
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (43 bp):
TTACAGGTAAGACCATGTCTGGGACATTGGCATCGATATGTAA
Found at i:41715581 original size:43 final size:42
Alignment explanation
Indices: 41715529--41715752 Score: 279
Period size: 43 Copynumber: 5.2 Consensus size: 42
41715519 TTATTTCTAT
* ** *
41715529 AAACGCCGCTAAAGGTCATGTTCTTTAGCGATGCTTTATCCAC
1 AAACGCCGCTAAAGGTAATGTTCTTTAGCGGCGCTTT-TTCAC
* *
41715572 AAACGCCGCTAAAGGTAATGTTCTTTAGCGGTGCTTTATTCAT
1 AAACGCCGCTAAAGGTAATGTTCTTTAGCGGCGCTTT-TTCAC
*
41715615 AAACGCCG-TGAAAGGTAATGTTCTTTAGCGGCACTTTTTTCAC
1 AAACGCCGCT-AAAGGTAATGTTCTTTAGCGGCGC-TTTTTCAC
* *
41715658 AAACGCCGCTAAAGGTAAGGTTCTTTAGCAGCGCATTTTTCAC
1 AAACGCCGCTAAAGGTAATGTTCTTTAGCGGCGC-TTTTTCAC
* * *
41715701 AAACGCCGCTAAATGTCATGTTCTTTAGCGGCCCTTTTCTCAC
1 AAACGCCGCTAAAGGTAATGTTCTTTAGCGGCGCTTTT-TCAC
41715744 AAACGCCGC
1 AAACGCCGC
41715753 AATTTTTTTG
Statistics
Matches: 161, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
42 5 0.03
43 152 0.94
44 4 0.02
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (42 bp):
AAACGCCGCTAAAGGTAATGTTCTTTAGCGGCGCTTTTTCAC
Found at i:41715672 original size:86 final size:87
Alignment explanation
Indices: 41715515--41715752 Score: 311
Period size: 86 Copynumber: 2.7 Consensus size: 87
41715505 AACTTTTGCG
*** * *
41715515 GCATTTATTTCTATAAACGCCGCTAAAGGTCATGTTCTTTAGCGATGCTTTATCCACAAACGCCG
1 GCATTTA-TTC-ATAAACGCCGCTAAAGGTCATGTTCTTTAGCGGCACTTTTTTCACAAACGCCG
* * *
41715580 CTAAAGGTAATGTTCTTTAGCGGT
64 CTAAAGGTAAGGTTCTTTAGCAGC
*
41715604 GC-TTTATTCATAAACGCCG-TGAAAGGTAATGTTCTTTAGCGGCACTTTTTTCACAAACGCCGC
1 GCATTTATTCATAAACGCCGCT-AAAGGTCATGTTCTTTAGCGGCACTTTTTTCACAAACGCCGC
41715667 TAAAGGTAAGGTTCTTTAGCAGC
65 TAAAGGTAAGGTTCTTTAGCAGC
* * * *
41715690 GCATTT-TTCACAAACGCCGCTAAATGTCATGTTCTTTAGCGGCCCTTTTCTCACAAACGCCGC
1 GCATTTATTCATAAACGCCGCTAAAGGTCATGTTCTTTAGCGGCACTTTTTTCACAAACGCCGC
41715753 AATTTTTTTG
Statistics
Matches: 132, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
85 1 0.01
86 118 0.89
87 7 0.05
88 4 0.03
89 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (87 bp):
GCATTTATTCATAAACGCCGCTAAAGGTCATGTTCTTTAGCGGCACTTTTTTCACAAACGCCGCT
AAAGGTAAGGTTCTTTAGCAGC
Found at i:41715783 original size:86 final size:85
Alignment explanation
Indices: 41715529--41715799 Score: 255
Period size: 86 Copynumber: 3.1 Consensus size: 85
41715519 TTATTTCTAT
*** *
41715529 AAACGCCGCTAAAGGTCATGTTCTTTAGCGATGCTTTATC-CACAAACGCCGCTAAAGGTAATGT
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCACTTT-TCTCACAAACGCCGCTAAA-GTTATGT
* *
41715593 -TCTTTAGCGGTGCTTTATTCAT
64 GTCTTTAGCGGCGCTTT-TTCAC
* * * *
41715615 AAACGCCG-TGAAAGGTAATGTTCTTTAGCGGCACTTTTTTCACAAACGCCGCTAAAGGTAAG-G
1 AAACGCCGCT-AAAGGTCATGTTCTTTAGCGGCACTTTTCTCACAAACGCCGCTAAAGTTATGTG
*
41715678 TTCTTTAGCAGCGCATTTTTCAC
65 -TCTTTAGCGGCGC-TTTTTCAC
* * ** *
41715701 AAACGCCGCTAAATGTCATGTTCTTTAGCGGCCCTTTTCTCACAAACGCCGC-AATTTTTTTGTG
1 AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCACTTTTCTCACAAACGCCGCTAA-AGTTATGTG
* *
41715765 ACCTTTAGCGGCGCTTTTTCTC
65 -TCTTTAGCGGCGCTTTTTCAC
*
41715787 AAAACGCCACTAA
1 -AAACGCCGCTAA
41715800 TTTTAGGATT
Statistics
Matches: 151, Mismatches: 25, Indels: 17
0.78 0.13 0.09
Matches are distributed among these distances:
85 7 0.05
86 117 0.77
87 27 0.18
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (85 bp):
AAACGCCGCTAAAGGTCATGTTCTTTAGCGGCACTTTTCTCACAAACGCCGCTAAAGTTATGTGT
CTTTAGCGGCGCTTTTTCAC
Done.