Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 126 of 145
Found at i:42058226 original size:20 final size:19
Alignment explanation
Indices: 42058181--42058234 Score: 72
Period size: 20 Copynumber: 2.8 Consensus size: 19
42058171 AAAAGGGAGG
**
42058181 AAATCAGTGTAAAGGGGAA
1 AAATCAGTGTAAAGGAAAA
*
42058200 AAGTCAGTGTAAAGAGAAAA
1 AAATCAGTGTAAAG-GAAAA
42058220 AAATCAGTGTAAAGG
1 AAATCAGTGTAAAGG
42058235 GAGGGAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 14 0.47
20 16 0.53
ACGTcount: A:0.50, C:0.06, G:0.28, T:0.17
Consensus pattern (19 bp):
AAATCAGTGTAAAGGAAAA
Found at i:42059080 original size:24 final size:24
Alignment explanation
Indices: 42059049--42059298 Score: 155
Period size: 24 Copynumber: 10.7 Consensus size: 24
42059039 AAGTATTGTA
*
42059049 TATTATTATTTTAGATTTATCATG
1 TATTATTATTTTAAATTTATCATG
* *
42059073 TTTTATTATTTGT-AATTTATCA-A
1 TATTATTATTT-TAAATTTATCATG
* *
42059096 TATTATTATTTTAAATTCATCGT-
1 TATTATTATTTTAAATTTATCATG
**
42059119 TAACATTATTTTAAATTTATCATG
1 TATTATTATTTTAAATTTATCATG
*
42059143 TA-TATCTATTTCAAATTTATCAT-
1 TATTAT-TATTTTAAATTTATCATG
* * *
42059166 TAATA-T-TTTTAAATTTATTATA
1 TATTATTATTTTAAATTTATCATG
* ** *
42059188 TACTATTATTTTGGATTTATCACG
1 TATTATTATTTTAAATTTATCATG
* *
42059212 TATGATTATTCTAGAA-TTATCAT-
1 TATTATTATTTTA-AATTTATCATG
* * *
42059235 CA-AAAT-TTTTAAATTTTAT-ATG
1 TATTATTATTTTAAA-TTTATCATG
* * *
42059257 TATTATTATTTCAAATTTATTATA
1 TATTATTATTTTAAATTTATCATG
*
42059281 TATTATTTATTGTAAATT
1 TATTA-TTATTTTAAATT
42059299 ATCCAATTCA
Statistics
Matches: 172, Mismatches: 37, Indels: 33
0.71 0.15 0.14
Matches are distributed among these distances:
20 2 0.01
21 19 0.11
22 13 0.08
23 49 0.28
24 77 0.45
25 12 0.07
ACGTcount: A:0.34, C:0.06, G:0.05, T:0.55
Consensus pattern (24 bp):
TATTATTATTTTAAATTTATCATG
Found at i:42059138 original size:46 final size:46
Alignment explanation
Indices: 42059048--42059199 Score: 123
Period size: 47 Copynumber: 3.3 Consensus size: 46
42059038 AAAGTATTGT
* * ***
42059048 ATATTATTATTTTAGATTTATCATGTTTTATTATTTGT-AATTTATCA
1 ATATTATTATTTTAAATTCATCAT-TAACATTATTT-TAAATTTATCA
*
42059095 ATATTATTATTTTAAATTCATCGTTAACATTATTTTAAATTTATC-
1 ATATTATTATTTTAAATTCATCATTAACATTATTTTAAATTTATCA
* * * * *
42059140 ATGTATATCTATTTCAAATTTATCATTAATA-T-TTTTAAATTTATTA
1 ATAT-TAT-TATTTTAAATTCATCATTAACATTATTTTAAATTTATCA
*
42059186 TATACTATTATTTT
1 -ATATTATTATTTT
42059200 GGATTTATCA
Statistics
Matches: 85, Mismatches: 15, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
45 21 0.25
46 23 0.27
47 41 0.48
ACGTcount: A:0.34, C:0.07, G:0.03, T:0.57
Consensus pattern (46 bp):
ATATTATTATTTTAAATTCATCATTAACATTATTTTAAATTTATCA
Found at i:42059153 original size:47 final size:46
Alignment explanation
Indices: 42059077--42059198 Score: 117
Period size: 46 Copynumber: 2.7 Consensus size: 46
42059067 ATCATGTTTT
* *
42059077 ATTATTTGT-AATTTATCAATATTATTATTTTAAATTCATCGTTAAC
1 ATTATTT-TAAATTTATCAATATTATTATTTCAAATTCATCATTAAC
* * *
42059123 ATTATTTTAAATTTATC-ATGTATATCTATTTCAAATTTATCATTAAT
1 ATTATTTTAAATTTATCAATAT-TAT-TATTTCAAATTCATCATTAAC
* *
42059170 A-T-TTTTAAATTTATTATATACTATTATTT
1 ATTATTTTAAATTTATCA-ATATTATTATTT
42059199 TGGATTTATC
Statistics
Matches: 63, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
45 21 0.33
46 22 0.35
47 20 0.32
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.55
Consensus pattern (46 bp):
ATTATTTTAAATTTATCAATATTATTATTTCAAATTCATCATTAAC
Found at i:42059275 original size:69 final size:69
Alignment explanation
Indices: 42059123--42059276 Score: 172
Period size: 69 Copynumber: 2.2 Consensus size: 69
42059113 CATCGTTAAC
* * *
42059123 ATTATTTTAAATTTATCATGTATATCTATTTCAAATTTATCATTAATATTTTTAAATTTATTATA
1 ATTATTTTAAATTTATCACGTATATCTATTTCAAATTTATCATCAAAATTTTTAAATTTATTATA
42059188 TACT
66 TACT
**
42059192 ATTATTTTGGATTTATCACGTATGAT-TA-TTCTAGAA-TTATCATCAAAATTTTTAAATTT-TA
1 ATTATTTTAAATTTATCACGTAT-ATCTATTTC-A-AATTTATCATCAAAATTTTTAAATTTAT-
* *
42059253 TATGTATT
62 TATATACT
*
42059261 ATTATTTCAAATTTAT
1 ATTATTTTAAATTTAT
42059277 TATATATTAT
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
68 4 0.06
69 63 0.89
70 4 0.06
ACGTcount: A:0.35, C:0.07, G:0.05, T:0.53
Consensus pattern (69 bp):
ATTATTTTAAATTTATCACGTATATCTATTTCAAATTTATCATCAAAATTTTTAAATTTATTATA
TACT
Found at i:42059653 original size:43 final size:43
Alignment explanation
Indices: 42059605--42059721 Score: 191
Period size: 43 Copynumber: 2.7 Consensus size: 43
42059595 GTGAAAAAAT
*
42059605 GCCGCTAAAGAACATGACCTTTAGCGACGCTTTTGTCACAAAC
1 GCCGCTAAAGAACATGACCTTTAGCGACGCTTTTATCACAAAC
* *
42059648 GCCGCTAAAGAACATGACCTTTAGTGACGCTTTTATCATAAAC
1 GCCGCTAAAGAACATGACCTTTAGCGACGCTTTTATCACAAAC
*
42059691 GCCGCTAAAGAACA-AACCTTTAGCGACGCTT
1 GCCGCTAAAGAACATGACCTTTAGCGACGCTT
42059722 CTCGCAAAAA
Statistics
Matches: 69, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
42 15 0.22
43 54 0.78
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (43 bp):
GCCGCTAAAGAACATGACCTTTAGCGACGCTTTTATCACAAAC
Found at i:42059733 original size:42 final size:42
Alignment explanation
Indices: 42059599--42059735 Score: 168
Period size: 43 Copynumber: 3.2 Consensus size: 42
42059589 GTTTATGTGA
* *
42059599 AAAAATGCCGCTAAAGAACATGACCTTTAGCGACGCTTTTGTC
1 AAAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTAG-C
* * *
42059642 ACAAACGCCGCTAAAGAACATGACCTTTAGTGACGCTTTTATC
1 AAAAACGCCGCTAAAGAACATGACCTTTAGCGACGC-TTTAGC
* * *
42059685 ATAAACGCCGCTAAAGAACA-AACCTTTAGCGACGCTTCTCGC
1 AAAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTT-TAGC
42059727 AAAAACGCC
1 AAAAACGCC
42059736 ACAAAAAACA
Statistics
Matches: 81, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
41 2 0.02
42 23 0.28
43 53 0.65
44 3 0.04
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.22
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGACCTTTAGCGACGCTTTAGC
Found at i:42064390 original size:7 final size:7
Alignment explanation
Indices: 42064380--42064424 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
42064370 CACTAACTCT
42064380 TAACCCC
1 TAACCCC
*
42064387 TAACCTC
1 TAACCCC
*
42064394 TAACCCA
1 TAACCCC
42064401 TAACCCC
1 TAACCCC
**
42064408 TAACTAC
1 TAACCCC
42064415 TAACCCC
1 TAACCCC
42064422 TAA
1 TAA
42064425 ATCTTATTTA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.36, C:0.44, G:0.00, T:0.20
Consensus pattern (7 bp):
TAACCCC
Found at i:42064396 original size:21 final size:21
Alignment explanation
Indices: 42064380--42064420 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
42064370 CACTAACTCT
42064380 TAACCCCTAACCTCTAACCCA
1 TAACCCCTAACCTCTAACCCA
42064401 TAACCCCTAA-CTACTAACCC
1 TAACCCCTAACCT-CTAACCC
42064421 CTAAATCTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.34, C:0.46, G:0.00, T:0.20
Consensus pattern (21 bp):
TAACCCCTAACCTCTAACCCA
Found at i:42064499 original size:20 final size:20
Alignment explanation
Indices: 42064467--42064510 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
42064457 ATTAATCTAG
42064467 ACCCTAAATCCTAAACCCTA
1 ACCCTAAATCCTAAACCCTA
*
42064487 ACCC-AAATCCCTAACCCCTA
1 ACCCTAAAT-CCTAAACCCTA
42064507 ACCC
1 ACCC
42064511 CTACACCTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.36, C:0.48, G:0.00, T:0.16
Consensus pattern (20 bp):
ACCCTAAATCCTAAACCCTA
Found at i:42064560 original size:88 final size:92
Alignment explanation
Indices: 42064388--42064563 Score: 234
Period size: 88 Copynumber: 2.0 Consensus size: 92
42064378 CTTAACCCCT
* * *
42064388 AACCTCTAACCCATAACCCCTAACTACTAACCCCTAAATCTTATTTAATATATAAATTAAAAAAT
1 AACCTCTAACCCATAACCCCTAACCACTAACCCCTAAACCTTATTTAATATATAAATTAAAAAAC
*
42064453 ACTAATTAATCTAGACCCTAAATCCTA
66 ACTAATTAATCTAAACCCTAAATCCTA
* * * * * *
42064480 AACC-CTAACCCA-AATCCCTAACCCCTAACCCCTACACCTTA-TTCA-ATATAAATTAGAACAC
1 AACCTCTAACCCATAACCCCTAACCACTAACCCCTAAACCTTATTTAATATATAAATTAAAAAAC
42064541 ACTAATTAATCTAAACCCTAAAT
66 ACTAATTAATCTAAACCCTAAAT
42064564 TAACATTATT
Statistics
Matches: 74, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
88 35 0.47
89 3 0.04
90 24 0.32
91 8 0.11
92 4 0.05
ACGTcount: A:0.43, C:0.30, G:0.01, T:0.27
Consensus pattern (92 bp):
AACCTCTAACCCATAACCCCTAACCACTAACCCCTAAACCTTATTTAATATATAAATTAAAAAAC
ACTAATTAATCTAAACCCTAAATCCTA
Found at i:42064784 original size:40 final size:40
Alignment explanation
Indices: 42064733--42064868 Score: 125
Period size: 40 Copynumber: 3.4 Consensus size: 40
42064723 TGGGCTTAGG
* *
42064733 TTTTTTGCGGCGTTTTTCCAAGAAACGCCACTAATGCTC-A
1 TTTTTAGCGGCG-TTTTCCAAGAAACGCCGCTAATGCTCAA
* ** * * *
42064773 TTTTTAGCGGCGCTTTCCTGGAAACGCTGCTGATGCTCGA
1 TTTTTAGCGGCGTTTTCCAAGAAACGCCGCTAATGCTCAA
* * *
42064813 TCTTTAGCGGCGTTTT--ATGTAAAGCGCCGCTAATACTCAA
1 TTTTTAGCGGCGTTTTCCAAG-AAA-CGCCGCTAATGCTCAA
42064853 TTTTTAGCGGCGTTTT
1 TTTTTAGCGGCGTTTT
42064869 TTGTCCAAAC
Statistics
Matches: 77, Mismatches: 16, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
38 1 0.01
39 23 0.30
40 53 0.69
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTCCAAGAAACGCCGCTAATGCTCAA
Found at i:42065227 original size:12 final size:12
Alignment explanation
Indices: 42065212--42065237 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
42065202 ATTAGTTGTT
42065212 TTAAATGATTTA
1 TTAAATGATTTA
42065224 TTAAATGATTTA
1 TTAAATGATTTA
42065236 TT
1 TT
42065238 TCAATTCATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (12 bp):
TTAAATGATTTA
Found at i:42065355 original size:226 final size:224
Alignment explanation
Indices: 42064919--42065348 Score: 783
Period size: 226 Copynumber: 1.9 Consensus size: 224
42064909 TGGTGTAGTG
*
42064919 ATATTTTAATTTTTCTTCATACTTCATTTGCTTAAATATTTTTGTATATTGTGTTTTATTAGTTG
1 ATATTTTAATTTTTCTTCATACTTCATTTGCTTAAATATTTTTGTATATTATGTTTTATTAGTTG
42064984 TTTTAAACAATTTATTAAATGATTTATTTCAATTCATTTCATGTATTCATTTTATCTTAAATTGA
66 TTTTAAACAATTTATTAAATGATTTATTTCAATTCATTTCATGTATTCATTTTATCTTAAATTGA
42065049 TTTGCATAATAGATTTTTTTAGCCTATTACTTACTTCATGTTGTTTTATTTATGTACCCTTTCTT
131 TTTGCATAATAGATTTTTTTAGCC--TTACTTACTTCATGTTGTTTTATTTATGTACCCTTTCTT
42065114 TGGAATTAAGTTTTATTTTTCTATATAATGT
194 TGGAATTAAGTTTTATTTTTCTATATAATGT
*
42065145 ATATTTTAATTTTTCTTCATACTTTATTTGCTTAAATATTTTTGTATATTATGTTTTATTAGTTG
1 ATATTTTAATTTTTCTTCATACTTCATTTGCTTAAATATTTTTGTATATTATGTTTTATTAGTTG
**
42065210 TTTTAAATGATTTATTAAATGATTTATTTCAATTCATTTCATGTATTCATTTTATCTTAAATTGA
66 TTTTAAACAATTTATTAAATGATTTATTTCAATTCATTTCATGTATTCATTTTATCTTAAATTGA
*
42065275 TTTGCATAATAGATTTTTTTAGCC-TA-TTACTTCATGTTGTTTTGTTTATGTACCCTTTCTTTG
131 TTTGCATAATAGATTTTTTTAGCCTTACTTACTTCATGTTGTTTTATTTATGTACCCTTTCTTTG
42065338 GAATTAAGTTT
196 GAATTAAGTTT
42065349 GTTTTATATA
Statistics
Matches: 199, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
222 47 0.24
223 2 0.01
226 150 0.75
ACGTcount: A:0.26, C:0.09, G:0.09, T:0.56
Consensus pattern (224 bp):
ATATTTTAATTTTTCTTCATACTTCATTTGCTTAAATATTTTTGTATATTATGTTTTATTAGTTG
TTTTAAACAATTTATTAAATGATTTATTTCAATTCATTTCATGTATTCATTTTATCTTAAATTGA
TTTGCATAATAGATTTTTTTAGCCTTACTTACTTCATGTTGTTTTATTTATGTACCCTTTCTTTG
GAATTAAGTTTTATTTTTCTATATAATGT
Found at i:42066832 original size:12 final size:13
Alignment explanation
Indices: 42066815--42066844 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
42066805 CTCATACATG
42066815 AATAAATAAA-GC
1 AATAAATAAATGC
42066827 AATAAATAAATGC
1 AATAAATAAATGC
42066840 AATAA
1 AATAA
42066845 TTATACCCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.67, C:0.07, G:0.07, T:0.20
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:42073421 original size:50 final size:50
Alignment explanation
Indices: 42073296--42073536 Score: 180
Period size: 49 Copynumber: 4.7 Consensus size: 50
42073286 GATAATAACA
* * * * ** * * * *
42073296 TGCCAAAGTCATGTCCAAGACATGGTCTTACATGGGATGTTTCCTGT-AC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATCAG
* * * * **
42073345 TGCAAATGCCATATCCTAGATATGGTCTTACATGAGAGTTCTCATATCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATCAG
* ** * * *
42073395 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATCAG
* * * *
42073445 TGCCAACGCCATGT-CCAGACATGGTCTTACGTGAGACCTCTTATAACCTCAATAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCAT-A--TC---AG
42073500 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGA
42073537 TTTCATTCCC
Statistics
Matches: 149, Mismatches: 35, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
49 62 0.42
50 51 0.34
52 2 0.01
55 13 0.09
56 21 0.14
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATATCAG
Found at i:42073483 original size:49 final size:49
Alignment explanation
Indices: 42073352--42073536 Score: 154
Period size: 50 Copynumber: 3.6 Consensus size: 49
42073342 TACTGCAAAT
* * * ** * *
42073352 GCCATATCCTAGATATGGTCTTACATGAGAGTTCTCATATCAGTGCCCAT
1 GCCATGTCC-AGACATGGTCTTACGTGAGACCTCTCATATCAGTGCCAAC
* * * *
42073402 GCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAAC
1 GCCATGT-CCAGACATGGTCTTACGTGAGACCTCTCATATCAGTGCCAAC
* * *
42073452 GCCATGTCCAGACATGGTCTTACGTGAGACCTCTTATAACCTCAATAATGCCAAT
1 GCCATGTCCAGACATGGTCTTACGTGAGACCTCTCAT-A--TC---AGTGCCAAC
*
42073507 GCCATGTCCCAGACATGGTCTTACATGAGA
1 GCCATGT-CCAGACATGGTCTTACGTGAGA
42073537 TTTCATTCCC
Statistics
Matches: 108, Mismatches: 19, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
49 27 0.25
50 43 0.40
51 2 0.02
52 2 0.02
55 13 0.12
56 21 0.19
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (49 bp):
GCCATGTCCAGACATGGTCTTACGTGAGACCTCTCATATCAGTGCCAAC
Found at i:42076504 original size:45 final size:45
Alignment explanation
Indices: 42076453--42076543 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
42076443 ACTTAGTAAG
*
42076453 TATGCCCAGGAACGTGAACCAATAGAGGTTGCTATGTGTACTCGA
1 TATGCCCAGGAACATGAACCAATAGAGGTTGCTATGTGTACTCGA
42076498 TATGCCCAGGAACATGAACCAATAGAGGTTGCTATGTGTACTCGA
1 TATGCCCAGGAACATGAACCAATAGAGGTTGCTATGTGTACTCGA
42076543 T
1 T
42076544 TTTAAGATGA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (45 bp):
TATGCCCAGGAACATGAACCAATAGAGGTTGCTATGTGTACTCGA
Found at i:42082870 original size:50 final size:50
Alignment explanation
Indices: 42082793--42083034 Score: 245
Period size: 50 Copynumber: 4.8 Consensus size: 50
42082783 TATCATTCAA
* ** * *
42082793 TACACGTAGTAGCCTTCACATTCTACTACACACGTGATCAAACTTTCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACTATCCGG
* * * * *
42082843 TTCACGTAGTAGCCTGCACATAGTACTATACACGTGGCCATTAA-TATCTGA
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA--AACTATCCGG
* * *
42082894 TACACGTAGTACCCTGCACATAATACTACACACGTGATCCAAGCTATCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCAAACTATCCGG
* * * * ***
42082945 TACGCATAGTAGCCTGCACATAGTACTACACATGCGACCTTTC-ATTCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACTA-TCCGG
*
42082995 TACACGTAGTAGCCTACACATAGTACTACACACGTGACCA
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA
42083035 TCACTTTCAC
Statistics
Matches: 154, Mismatches: 33, Indels: 10
0.78 0.17 0.05
Matches are distributed among these distances:
49 1 0.01
50 76 0.49
51 72 0.47
52 5 0.03
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (50 bp):
TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACTATCCGG
Found at i:42082999 original size:101 final size:101
Alignment explanation
Indices: 42082792--42083031 Score: 293
Period size: 101 Copynumber: 2.4 Consensus size: 101
42082782 TTATCATTCA
* ** * * *
42082792 ATACACGTAGTAGCCTTCACATTCTACTACACACGTGATCAAACTTTCCGGTTCACGTAGTAGCC
1 ATACACGTAGTAGCCTACACATAATACTACACACGTGATCAAACTATCCGGTACACATAGTAGCC
* * * *
42082857 TGCACATAGTACTATACACGTGGCCATTAATATCTG
66 TGCACATAGTACTACACACGCGACCATTAATATCCG
* * * *
42082893 ATACACGTAGTACCCTGCACATAATACTACACACGTGATCCAAGCTATCCGGTACGCATAGTAGC
1 ATACACGTAGTAGCCTACACATAATACTACACACGTGAT-CAAACTATCCGGTACACATAGTAGC
* * *
42082958 CTGCACATAGTACTACACATGCGACCTTTCAT-TCCG
65 CTGCACATAGTACTACACACGCGACCATTAATATCCG
* *
42082994 GTACACGTAGTAGCCTACACATAGTACTACACACGTGA
1 ATACACGTAGTAGCCTACACATAATACTACACACGTGA
42083032 CCATCACTTT
Statistics
Matches: 118, Mismatches: 20, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
101 72 0.61
102 46 0.39
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.25
Consensus pattern (101 bp):
ATACACGTAGTAGCCTACACATAATACTACACACGTGATCAAACTATCCGGTACACATAGTAGCC
TGCACATAGTACTACACACGCGACCATTAATATCCG
Found at i:42084015 original size:13 final size:13
Alignment explanation
Indices: 42083997--42084032 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
42083987 GCTCAAACGT
42083997 CGAAATTTTCGAA
1 CGAAATTTTCGAA
42084010 CGAAATTTTCGAA
1 CGAAATTTTCGAA
*
42084023 TGAAATTTTC
1 CGAAATTTTC
42084033 ACAAAATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (13 bp):
CGAAATTTTCGAA
Found at i:42085218 original size:42 final size:41
Alignment explanation
Indices: 42085133--42085225 Score: 114
Period size: 42 Copynumber: 2.2 Consensus size: 41
42085123 ACCGGCACTT
* * * *
42085133 AGCCTGCTAGACATATAGTCTGAAATGTTTCACTGGCATTA
1 AGCCTGCTAGACATAAAGTCAGAAATGTTTCACTGGAAATA
* *
42085174 AGCCTGCTAGACGTAAAGTCAGATATTGTTTCACTGGAAATA
1 AGCCTGCTAGACATAAAGTCAGA-AATGTTTCACTGGAAATA
*
42085216 AGCTTGCTAG
1 AGCCTGCTAG
42085226 GCGCTAAGCC
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 20 0.45
42 24 0.55
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (41 bp):
AGCCTGCTAGACATAAAGTCAGAAATGTTTCACTGGAAATA
Found at i:42090597 original size:37 final size:37
Alignment explanation
Indices: 42090496--42090602 Score: 112
Period size: 37 Copynumber: 2.9 Consensus size: 37
42090486 TTGTCAACTA
42090496 AAACACACCGTCCTAGGGGGTTTGATACTCTAATGAC
1 AAACACACCGTCCTAGGGGGTTTGATACTCTAATGAC
* ** * * *
42090533 AAACTCA--GTAGAATCAAGAGG-TAGATACTCTAATGAC
1 AAACACACCGT--CCT-AGGGGGTTTGATACTCTAATGAC
42090570 AAACACACCGTCCTAGGGGGTTTGATACTCTAA
1 AAACACACCGTCCTAGGGGGTTTGATACTCTAA
42090603 AGTCTCACAC
Statistics
Matches: 52, Mismatches: 12, Indels: 12
0.68 0.16 0.16
Matches are distributed among these distances:
35 2 0.04
36 4 0.08
37 40 0.77
38 4 0.08
39 2 0.04
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (37 bp):
AAACACACCGTCCTAGGGGGTTTGATACTCTAATGAC
Found at i:42096424 original size:16 final size:15
Alignment explanation
Indices: 42096399--42096428 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
42096389 GGCGTCTTTT
42096399 GAACCGATTTAGATG
1 GAACCGATTTAGATG
42096414 GAACACGATTTAGAT
1 GAAC-CGATTTAGAT
42096429 TGAAAGCAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.37, C:0.13, G:0.23, T:0.27
Consensus pattern (15 bp):
GAACCGATTTAGATG
Found at i:42097842 original size:42 final size:42
Alignment explanation
Indices: 42097758--42097934 Score: 212
Period size: 42 Copynumber: 4.2 Consensus size: 42
42097748 ACCAACACTT
* * * *
42097758 AGCCTGCTAGCCATATAGTCTGA-AATGTTTCACCGACATTA
1 AGCCTGCTAGACATAAAGTCTGATATTGTTTCACCGGCATTA
* *
42097799 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCATCGGCATTA
1 AGCCTGCTAGACATAAAGTCTGATATTGTTTCACCGGCATTA
* * * *
42097841 AGCCTACTAGACATAAAGTTTGAAATTATTTCACCGGCATTA
1 AGCCTGCTAGACATAAAGTCTGATATTGTTTCACCGGCATTA
* * * *
42097883 AGCCTGCTAGACGTAAAGTCAGATATTGTTTCACTGGCAATA
1 AGCCTGCTAGACATAAAGTCTGATATTGTTTCACCGGCATTA
*
42097925 AGTCTGCTAG
1 AGCCTGCTAG
42097935 GAGCTAAGTG
Statistics
Matches: 114, Mismatches: 21, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
41 20 0.18
42 94 0.82
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (42 bp):
AGCCTGCTAGACATAAAGTCTGATATTGTTTCACCGGCATTA
Found at i:42097882 original size:84 final size:83
Alignment explanation
Indices: 42097758--42097915 Score: 244
Period size: 84 Copynumber: 1.9 Consensus size: 83
42097748 ACCAACACTT
* * * * *
42097758 AGCCTGCTAGCCATATAGTCTGAAATGTTTCACCGACATTAAGCCTGCTAGACGTAAAGTCTGAT
1 AGCCTACTAGACATAAAGTCTGAAATATTTCACCGACATTAAGCCTGCTAGACGTAAAGTCAGAT
42097823 ATTGTTTCATCGGCATTA
66 ATTGTTTCATCGGCATTA
* *
42097841 AGCCTACTAGACATAAAGTTTGAAATTATTTCACCGGCATTAAGCCTGCTAGACGTAAAGTCAGA
1 AGCCTACTAGACATAAAGTCTGAAA-TATTTCACCGACATTAAGCCTGCTAGACGTAAAGTCAGA
42097906 TATTGTTTCA
65 TATTGTTTCA
42097916 CTGGCAATAA
Statistics
Matches: 67, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
83 21 0.31
84 46 0.69
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.31
Consensus pattern (83 bp):
AGCCTACTAGACATAAAGTCTGAAATATTTCACCGACATTAAGCCTGCTAGACGTAAAGTCAGAT
ATTGTTTCATCGGCATTA
Found at i:42105525 original size:22 final size:21
Alignment explanation
Indices: 42105500--42105569 Score: 52
Period size: 22 Copynumber: 3.0 Consensus size: 21
42105490 TTAAAACTCT
42105500 TTTAAATAATAATTAAATTCTA
1 TTTAAATAATAATTAAA-TCTA
* *
42105522 TTTAATTATTATTTATCTAAAACTCT-
1 TTTAA--A-TAATAAT-T-AAA-TCTA
42105548 TTTAAATAATAATTAAATCTA
1 TTTAAATAATAATTAAATCTA
42105569 T
1 T
42105570 AATAATTAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 13
0.67 0.09 0.24
Matches are distributed among these distances:
20 3 0.08
21 4 0.11
22 6 0.16
23 5 0.14
24 2 0.05
25 5 0.14
26 6 0.16
27 6 0.16
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (21 bp):
TTTAAATAATAATTAAATCTA
Found at i:42105573 original size:15 final size:15
Alignment explanation
Indices: 42105553--42105584 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
42105543 ACTCTTTTAA
42105553 ATAATAATTAAATCT
1 ATAATAATTAAATCT
*
42105568 ATAATAATTAATTCT
1 ATAATAATTAAATCT
42105583 AT
1 AT
42105585 TTCCTTATCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAATTAAATCT
Found at i:42105577 original size:48 final size:48
Alignment explanation
Indices: 42105443--42105569 Score: 204
Period size: 48 Copynumber: 2.6 Consensus size: 48
42105433 TTGATTTTTA
* *
42105443 AAAACTCTTTTAGATAATAATTTAAATTCTATTTAATTATCTTTTATTT
1 AAAACTCTTTTAAATAATAA-TTAAATTCTATTTAATTATCTTTTATCT
42105492 AAAACTCTTTTAAATAATAATTAAATTCTATTTAATTAT-TATTTATCT
1 AAAACTCTTTTAAATAATAATTAAATTCTATTTAATTATCT-TTTATCT
42105540 AAAACTCTTTTAAATAATAATTAAA-TCTAT
1 AAAACTCTTTTAAATAATAATTAAATTCTAT
42105570 AATAATTAAT
Statistics
Matches: 75, Mismatches: 2, Indels: 4
0.93 0.02 0.05
Matches are distributed among these distances:
47 6 0.08
48 50 0.67
49 19 0.25
ACGTcount: A:0.42, C:0.09, G:0.01, T:0.49
Consensus pattern (48 bp):
AAAACTCTTTTAAATAATAATTAAATTCTATTTAATTATCTTTTATCT
Found at i:42107748 original size:15 final size:16
Alignment explanation
Indices: 42107728--42107757 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
42107718 TGATGCATTG
42107728 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
42107743 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
42107758 AGTATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:42126690 original size:15 final size:16
Alignment explanation
Indices: 42126672--42126701 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
42126662 TGGTGTCTTG
42126672 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
42126687 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
42126702 AGTATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:42129240 original size:16 final size:16
Alignment explanation
Indices: 42129219--42129250 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
42129209 TCACACATGC
42129219 CATCTGACACGGTTGT
1 CATCTGACACGGTTGT
*
42129235 CATCTGACCCGGTTGT
1 CATCTGACACGGTTGT
42129251 GTGTCCCTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.16, C:0.28, G:0.25, T:0.31
Consensus pattern (16 bp):
CATCTGACACGGTTGT
Found at i:42139920 original size:19 final size:19
Alignment explanation
Indices: 42139896--42139933 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
42139886 AAATGTATAC
* *
42139896 AGAGGCACCGAAGTGCAAA
1 AGAGGCACCAAACTGCAAA
42139915 AGAGGCACCAAACTGCAAA
1 AGAGGCACCAAACTGCAAA
42139934 TCTCATACAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.45, C:0.24, G:0.26, T:0.05
Consensus pattern (19 bp):
AGAGGCACCAAACTGCAAA
Found at i:42144888 original size:27 final size:26
Alignment explanation
Indices: 42144851--42144949 Score: 92
Period size: 27 Copynumber: 3.7 Consensus size: 26
42144841 AGTGGTCAAT
*
42144851 AAATGATCAAAATACCCCTGAAGGATA
1 AAATGACCAAAATACCCCTGAAGG-TA
*
42144878 AAATGACCAAAATACCCCCGAAAGGTA
1 AAATGACCAAAATACCCCTG-AAGGTA
**
42144905 AAATGACTGAAATA-CCCTCGAAGGGTA
1 AAATGACCAAAATACCCCT-GAA-GGTA
* **
42144932 AAATAACTTAAATACCCC
1 AAATGACCAAAATACCCC
42144950 CAATGGGTAA
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
26 5 0.08
27 49 0.80
28 7 0.11
ACGTcount: A:0.46, C:0.22, G:0.14, T:0.17
Consensus pattern (26 bp):
AAATGACCAAAATACCCCTGAAGGTA
Found at i:42144934 original size:54 final size:54
Alignment explanation
Indices: 42144860--42144977 Score: 141
Period size: 54 Copynumber: 2.2 Consensus size: 54
42144850 TAAATGATCA
*
42144860 AAATACCCCTGAAGGATAAAATGACCAAAATACCCCCGAA-AGGTAAAATGACTG
1 AAATACCCCTGAAGGATAAAATAACCAAAATACCCCC-AATAGGTAAAATGACTG
* ** *
42144914 AAATA-CCCTCGAAGGGTAAAATAACTTAAATACCCCCAATGGGTAAAATGACTG
1 AAATACCCCT-GAAGGATAAAATAACCAAAATACCCCCAATAGGTAAAATGACTG
**
42144968 TTATACCCCT
1 AAATACCCCT
42144978 AGGAGTCAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
53 6 0.11
54 44 0.81
55 4 0.07
ACGTcount: A:0.42, C:0.23, G:0.15, T:0.19
Consensus pattern (54 bp):
AAATACCCCTGAAGGATAAAATAACCAAAATACCCCCAATAGGTAAAATGACTG
Found at i:42144957 original size:27 final size:26
Alignment explanation
Indices: 42144860--42144976 Score: 90
Period size: 27 Copynumber: 4.3 Consensus size: 26
42144850 TAAATGATCA
* * * **
42144860 AAATACCCCTGAAGGATAAAATGACCA
1 AAATACCCC-CAAGGGTAAAATAACTG
* *
42144887 AAATACCCCCGAAAGGTAAAATGACTG
1 AAATACCCCC-AAGGGTAAAATAACTG
* *
42144914 AAATACCCTCGAAGGGTAAAATAACTT
1 AAATACCC-CCAAGGGTAAAATAACTG
*
42144941 AAATACCCCCAATGGGTAAAATGACTG
1 AAATACCCCCAA-GGGTAAAATAACTG
**
42144968 TTATACCCC
1 AAATACCCC
42144977 TAGGAGTCAA
Statistics
Matches: 73, Mismatches: 14, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
26 3 0.04
27 69 0.95
28 1 0.01
ACGTcount: A:0.43, C:0.23, G:0.15, T:0.19
Consensus pattern (26 bp):
AAATACCCCCAAGGGTAAAATAACTG
Found at i:42145182 original size:26 final size:26
Alignment explanation
Indices: 42145153--42145207 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
42145143 TTTGCCACAT
* ** *
42145153 ATACTGTTATTGGTAGCTTCGCTGCG
1 ATACTGTTACTGCCAGCTTCGCTACG
*
42145179 ATACTTTTACTGCCAGCTTCGCTACG
1 ATACTGTTACTGCCAGCTTCGCTACG
42145205 ATA
1 ATA
42145208 TTGGTGTATT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (26 bp):
ATACTGTTACTGCCAGCTTCGCTACG
Found at i:42145334 original size:28 final size:28
Alignment explanation
Indices: 42145302--42145393 Score: 112
Period size: 28 Copynumber: 3.3 Consensus size: 28
42145292 GTTACATTAT
* *
42145302 CACACTATTATTGTATCGGGCTAAGGCC
1 CACACTGTTATTGTATTGGGCTAAGGCC
** * *
42145330 CACACTGTTATTAAATTAGGATAAGGCC
1 CACACTGTTATTGTATTGGGCTAAGGCC
* *
42145358 CATATTGTTATTGTATTGGGCTAAGGCC
1 CACACTGTTATTGTATTGGGCTAAGGCC
42145386 CACACTGT
1 CACACTGT
42145394 ACTGTTACTG
Statistics
Matches: 50, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (28 bp):
CACACTGTTATTGTATTGGGCTAAGGCC
Found at i:42151813 original size:27 final size:26
Alignment explanation
Indices: 42151774--42151861 Score: 86
Period size: 27 Copynumber: 3.3 Consensus size: 26
42151764 GGTGGTCAAT
*
42151774 AAATGACCTAAATAGCCCTAAAGGGTA
1 AAATGACCGAAATA-CCCTAAAGGGTA
**
42151801 AAATGACCGAAATACCCCCGAAGGGTA
1 AAATGACCGAAATA-CCCTAAAGGGTA
* * * *
42151828 AAATAATCGATATACCCTCATAGGGTA
1 AAATGACCGAAATACCCT-AAAGGGTA
42151855 AAATGAC
1 AAATGAC
42151862 TGTTATACCC
Statistics
Matches: 48, Mismatches: 12, Indels: 2
0.77 0.19 0.03
Matches are distributed among these distances:
26 3 0.06
27 45 0.94
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.18
Consensus pattern (26 bp):
AAATGACCGAAATACCCTAAAGGGTA
Found at i:42151868 original size:27 final size:27
Alignment explanation
Indices: 42151794--42151872 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
42151784 AATAGCCCTA
* *
42151794 AAGGGTAAAATGACCGAAATACCCCCG
1 AAGGGTAAAATGACTGATATACCCCCG
* *
42151821 AAGGGTAAAAT-AATCGATATACCCTC-
1 AAGGGTAAAATGACT-GATATACCCCCG
*
42151847 ATAGGGTAAAATGACTGTTATACCCC
1 A-AGGGTAAAATGACTGATATACCCC
42151873 TAAGAGTCGA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
26 2 0.05
27 38 0.90
28 2 0.05
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (27 bp):
AAGGGTAAAATGACTGATATACCCCCG
Found at i:42155458 original size:19 final size:19
Alignment explanation
Indices: 42155431--42155473 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
42155421 TAATTTGAGA
*
42155431 CTTAAACATGCATATTAAC
1 CTTACACATGCATATTAAC
42155450 CTTACACATGCATATTAAC
1 CTTACACATGCATATTAAC
42155469 CTTAC
1 CTTAC
42155474 CTTCCAATGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.37, C:0.26, G:0.05, T:0.33
Consensus pattern (19 bp):
CTTACACATGCATATTAAC
Found at i:42166400 original size:48 final size:47
Alignment explanation
Indices: 42166316--42166418 Score: 143
Period size: 48 Copynumber: 2.2 Consensus size: 47
42166306 TCAGGTAATG
* * * * *
42166316 TACCACATAATCAAATTGTGGACAGGCCATCACTTTTGTAAATATAC
1 TACCACATAATAAAATTGTGGACAAGCCACCACTTTTGCAAATAAAC
42166363 TACCACATAATAAAATTTGTGGACAAGCCACCACTTTTGCAAATAAAC
1 TACCACATAATAAAA-TTGTGGACAAGCCACCACTTTTGCAAATAAAC
*
42166411 TGCCACAT
1 TACCACAT
42166419 TCTTCCACCT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
47 14 0.29
48 35 0.71
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.27
Consensus pattern (47 bp):
TACCACATAATAAAATTGTGGACAAGCCACCACTTTTGCAAATAAAC
Found at i:42166494 original size:17 final size:18
Alignment explanation
Indices: 42166463--42166497 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
42166453 GATAGGCCAC
42166463 AAAATCACGTTTTCACTT
1 AAAATCACGTTTTCACTT
42166481 AAAATCAC-TTTTCACTT
1 AAAATCACGTTTTCACTT
42166498 TAGCATGGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.34, C:0.23, G:0.03, T:0.40
Consensus pattern (18 bp):
AAAATCACGTTTTCACTT
Found at i:42172216 original size:25 final size:22
Alignment explanation
Indices: 42172175--42172222 Score: 60
Period size: 25 Copynumber: 2.0 Consensus size: 22
42172165 TACACAAATA
*
42172175 ATCACATAACATTTAATCATCAT
1 ATCACATAACATATAATCA-CAT
42172198 ATCACAATATACATATAATCACAT
1 ATCAC-ATA-ACATATAATCACAT
42172222 A
1 A
42172223 ACATTCAAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 5 0.23
24 7 0.32
25 10 0.45
ACGTcount: A:0.48, C:0.21, G:0.00, T:0.31
Consensus pattern (22 bp):
ATCACATAACATATAATCACAT
Found at i:42172267 original size:39 final size:39
Alignment explanation
Indices: 42172154--42172288 Score: 182
Period size: 39 Copynumber: 3.4 Consensus size: 39
42172144 ACTTTTAAAT
* * * * *
42172154 ATATATCACATTACACAAATAATCACATAACATTTAATC
1 ATATATCACAATACTCATATAATCACATAACATTCAAGC
42172193 ATCATATCACAATA-TACATATAATCACATAACATTCAAGC
1 AT-ATATCACAATACT-CATATAATCACATAACATTCAAGC
42172233 ATATATCACAATACTCATATAATCACATAACATTCAAGC
1 ATATATCACAATACTCATATAATCACATAACATTCAAGC
**
42172272 ATATATTGCAATACTCA
1 ATATATCACAATACTCA
42172289 AAAACAAGTT
Statistics
Matches: 86, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
39 52 0.60
40 34 0.40
ACGTcount: A:0.47, C:0.21, G:0.02, T:0.30
Consensus pattern (39 bp):
ATATATCACAATACTCATATAATCACATAACATTCAAGC
Found at i:42185169 original size:19 final size:20
Alignment explanation
Indices: 42185135--42185175 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
42185125 CTTAACTTTG
42185135 TTTTATTTTTGTATTTTCAT
1 TTTTATTTTTGTATTTTCAT
* *
42185155 TTTTCTTTTTG-ATTTTGAT
1 TTTTATTTTTGTATTTTCAT
42185174 TT
1 TT
42185176 AAATTCAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.12, C:0.05, G:0.07, T:0.76
Consensus pattern (20 bp):
TTTTATTTTTGTATTTTCAT
Found at i:42190943 original size:7 final size:7
Alignment explanation
Indices: 42190931--42190960 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
42190921 AAGAGGGATG
42190931 AAAATGA
1 AAAATGA
42190938 AAAATG-
1 AAAATGA
42190944 AAAATGA
1 AAAATGA
42190951 AAAATGA
1 AAAATGA
42190958 AAA
1 AAA
42190961 GTAATGACGG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (7 bp):
AAAATGA
Found at i:42190944 original size:13 final size:13
Alignment explanation
Indices: 42190928--42190960 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
42190918 AAAAAGAGGG
42190928 ATGAAAATGAAAA
1 ATGAAAATGAAAA
42190941 ATGAAAATGAAAA
1 ATGAAAATGAAAA
42190954 ATGAAAA
1 ATGAAAA
42190961 GTAATGACGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.70, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
ATGAAAATGAAAA
Found at i:42192364 original size:44 final size:43
Alignment explanation
Indices: 42192316--42192627 Score: 147
Period size: 44 Copynumber: 7.1 Consensus size: 43
42192306 CCTGAATAGC
* *
42192316 AGTGGAATAGGTTGGAAACTACAGATCTTATCTCCCTAAGCAAT
1 AGTGGAACAGGTT-GAAACTACAGATCTTATCTCCCTAAGCAGT
* * * ** * *
42192360 AGTGGAGCAGATCGAAGACGGC-GAATCTTATCTTCCC-CAGGAGT
1 AGTGGAACAGGTTGAA-ACTACAG-ATCTTATC-TCCCTAAGCAGT
* * * * * * **
42192404 AG-GGAAACAGATTTAAGCCACA-AGTCATATTTCCCTGGGCAGT
1 AGTGG-AACAGGTTGAAACTACAGA-TCTTATCTCCCTAAGCAGT
* * *
42192447 AGTGGAATAGGTTAGAAACTATAGATCTTATCTCCCTAAGCAAT
1 AGTGGAACAGGTT-GAAACTACAGATCTTATCTCCCTAAGCAGT
* * * * *
42192491 AGTGGAGCAGGTCGAAGACGAC-GAATCTTATCTTCCC-CAGGAGT
1 AGTGGAACAGGTTGAA-ACTACAG-ATCTTATC-TCCCTAAGCAGT
* * * * *
42192535 AG-GGAAACAGATTGAAGCCACA-AGTCCTATTTCCCTGAA-CAGT
1 AGTGG-AACAGGTTGAAACTACAGA-TCTTATCTCCCT-AAGCAGT
* *
42192578 AGTGGAATAGGTTGGAAACTACAGATCTTATCTCCCTAAGCAAT
1 AGTGGAACAGGTT-GAAACTACAGATCTTATCTCCCTAAGCAGT
42192622 AGTGGA
1 AGTGGA
42192628 GCAGATCGAA
Statistics
Matches: 191, Mismatches: 55, Indels: 44
0.66 0.19 0.15
Matches are distributed among these distances:
42 10 0.05
43 52 0.27
44 119 0.62
45 10 0.05
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (43 bp):
AGTGGAACAGGTTGAAACTACAGATCTTATCTCCCTAAGCAGT
Found at i:42193048 original size:128 final size:129
Alignment explanation
Indices: 42192202--42193154 Score: 1225
Period size: 131 Copynumber: 7.3 Consensus size: 129
42192192 ATCAGTGAAT
*
42192202 ACTACAGATCTTATCTCCTTAAGCAATAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCC
1 ACTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCGAATCTTATCTT--CC
* * * *
42192267 AGGAGTAGGGAAACAGATTTAAGCCACAAGTCTTATTTCCCTGAAT-AGCAGTGGAATAGGTTGG
64 AAGAGTAAGGAAACAGATTTAAGCCACAAGTCCTATTTCCCTG-GTCAGCAGTGGAATAGGTTGG
42192331 AA
128 AA
42192333 ACTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCC
1 ACTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCGAATCTTATCTT--CC
* * * * * *
42192398 AGGAGTAGGGAAACAGATTTAAGCCACAAGTCATATTTCCCTGGGCAGTAGTGGAATAGGTTAGA
64 AAGAGTAAGGAAACAGATTTAAGCCACAAGTCCTATTTCCCTGGTCAGCAGTGGAATAGGTTGGA
42192463 A
129 A
* * *
42192464 ACTATAGATCTTATCTCCCTAAGCAATAGTGGAGCAGGTCGAAGACGACGAATCTTATCTTCCCC
1 ACTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCGAATCTTATCTT--CC
* * * ** *
42192529 AGGAGTAGGGAAACAGATTGAAGCCACAAGTCCTATTTCCCTGAACAGTAGTGGAATAGGTTGGA
64 AAGAGTAAGGAAACAGATTTAAGCCACAAGTCCTATTTCCCTGGTCAGCAGTGGAATAGGTTGGA
42192594 A
129 A
* *
42192595 ACTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGAGAATCTTATCTTCCCC
1 ACTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCGAATCTTATCTT-CCA
*
42192660 AGAAGTAAGGAAACAGATTTAAGCCACAAGTCCTATTTCCTTGAG-CAGCAGTGGAATAGGTTGG
65 AG-AGTAAGGAAACAGATTTAAGCCACAAGTCCTATTTCCCTG-GTCAGCAGTGGAATAGGTTGG
42192724 AA
128 AA
* * *
42192726 ACTATAGATCTTCTCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCAAATCTTATCTT-CAA
1 ACTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCAA
* *
42192790 GAGTAAGGAAGCAGATTTAAGCCACAAGTCCTATATCCCTGGTCAGCAGTGGAATAGGTTTGGAA
66 GAGTAAGGAAACAGATTTAAGCCACAAGTCCTATTTCCCTGGTCAGCAGTGGAATAGG-TTGGAA
* * * * *
42192855 ATTACAGATCTTGTCTCCCTAAGTAGTAGCGGAGCAGATCGAAGACGGCGAATCTTATCTT-CAA
1 ACTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCAA
* * * * * *
42192919 GTGTAAGGAAGCAGATTTAAGCCACAACTCCTATCTCCCTGGTCAGCAGTGGAGTAGGTTGAAA
66 GAGTAAGGAAACAGATTTAAGCCACAAGTCCTATTTCCCTGGTCAGCAGTGGAATAGGTTGGAA
* * * ** * * *
42192983 ATTACAGATCTTGTCTCCCTAAGCAGTAACGGAGCAGATTGAAGACGGTGAGTCTTATCTT-CAA
1 ACTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCAA
* * ** * * * *
42193047 GTGTAACGAAGTAGATTTAAGCCACAAG-CCTTATGTCCCTGGTCAGTAGTGGAGTAGGTTGAAA
66 GAGTAAGGAAACAGATTTAAGCCACAAGTCC-TATTTCCCTGGTCAGCAGTGGAATAGGTTGGAA
* * * *
42193111 ATTACAGATCTTATCTCCCTAAGCAGTAGCGGAGCAGATTGAAG
1 ACTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAG
42193155 CCGATAATTC
Statistics
Matches: 759, Mismatches: 57, Indels: 15
0.91 0.07 0.02
Matches are distributed among these distances:
127 3 0.00
128 214 0.28
129 120 0.16
130 4 0.01
131 418 0.55
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (129 bp):
ACTACAGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCAA
GAGTAAGGAAACAGATTTAAGCCACAAGTCCTATTTCCCTGGTCAGCAGTGGAATAGGTTGGAA
Found at i:42193213 original size:44 final size:43
Alignment explanation
Indices: 42193165--42193366 Score: 142
Period size: 44 Copynumber: 4.7 Consensus size: 43
42193155 CCGATAATTC
* * *
42193165 TATCTCCCTGAAATTGTAGTGGAGCGGATTAAAGTAATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTAACA-ATCT
* * * *** *
42193209 TATCTCTCTGAAGTTGCAGTAGAACGGATCGCA-T-CCAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTAACAATCT
* * *
42193250 TATCTCCCTGAAGTTGCAGTGGAGCAGA-GAGAAG-AAGCCAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTA-AAGTAA--CAATCT
* * * ***
42193294 TCTCTCCCTGAAATTGCAGTGGAGCGGATTAAAATGATTGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGT-AACAATCT
* *
42193338 TATCTCTCTGAAGTTGCAGTAGAGCGGAT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGAT
42193367 CGCATCAGAC
Statistics
Matches: 118, Mismatches: 32, Indels: 16
0.71 0.19 0.10
Matches are distributed among these distances:
41 29 0.25
42 1 0.01
43 1 0.01
44 85 0.72
45 1 0.01
46 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTAACAATCT
Found at i:42195347 original size:29 final size:27
Alignment explanation
Indices: 42195293--42195348 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
42195283 CTTTGTATTT
*
42195293 TTTTAAAATTAGTTTATATATTACTTA
1 TTTTAAAATTAGTTTATATACTACTTA
42195320 TTTTAAAATT-GATTTATATTAACTACTTA
1 TTTTAAAATTAG-TTTATA-T-ACTACTTA
42195349 AAACATGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
26 1 0.04
27 16 0.64
28 1 0.04
29 7 0.28
ACGTcount: A:0.38, C:0.05, G:0.04, T:0.54
Consensus pattern (27 bp):
TTTTAAAATTAGTTTATATACTACTTA
Found at i:42199930 original size:7 final size:7
Alignment explanation
Indices: 42199918--42199942 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
42199908 CCACTACTTT
42199918 TCTTTTC
1 TCTTTTC
42199925 TCTTTTC
1 TCTTTTC
42199932 TCTTTTC
1 TCTTTTC
42199939 TCTT
1 TCTT
42199943 AATATTATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (7 bp):
TCTTTTC
Found at i:42200425 original size:6 final size:6
Alignment explanation
Indices: 42200414--42200438 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
42200404 TGATAATTGA
42200414 TGTGAT TGTGAT TGTGAT TGTGAT T
1 TGTGAT TGTGAT TGTGAT TGTGAT T
42200439 ATGAAGTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.32, T:0.52
Consensus pattern (6 bp):
TGTGAT
Found at i:42200909 original size:50 final size:49
Alignment explanation
Indices: 42200725--42200909 Score: 174
Period size: 50 Copynumber: 3.7 Consensus size: 49
42200715 AGAAGTGGTT
* * * *
42200725 GTATATCTGCAAATCAATGGTGGCTTGTCCACAAAATATAACAGTGCCA
1 GTATATCAGCAAATCAATGATGGCTTGTCCACAAAATATATCAGTGGCA
* * * * *
42200774 GTATATCTGCAAATTAGTGGTGGTTTGTCCACAAAAATATATCAGTGGCA
1 GTATATCAGCAAATCAATGATGGCTTGTCCAC-AAAATATATCAGTGGCA
* * * * * * *
42200824 GTATATAATGCATATCAGT-AGTGGCTTGTCTACAAAGTGTTATTAGTGGCA
1 GTATATCA-GCAAATCAATGA-TGGCTTGTCCACAAAAT-ATATCAGTGGCA
*
42200875 GTTTATCAGCAAATCAATGATGGCTTGTCCACAAA
1 GTATATCAGCAAATCAATGATGGCTTGTCCACAAA
42200910 TGGTGTTTCG
Statistics
Matches: 111, Mismatches: 20, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
49 29 0.26
50 47 0.42
51 35 0.32
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (49 bp):
GTATATCAGCAAATCAATGATGGCTTGTCCACAAAATATATCAGTGGCA
Found at i:42202565 original size:16 final size:16
Alignment explanation
Indices: 42202546--42202594 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
42202536 TGTTGTAAGG
42202546 AAATGTTTTACAAACA
1 AAATGTTTTACAAACA
* **
42202562 AAATGTTGT---AAGG
1 AAATGTTTTACAAACA
42202575 AAATGTTTTACAAACA
1 AAATGTTTTACAAACA
42202591 AAAT
1 AAAT
42202595 TAGTAGCATA
Statistics
Matches: 24, Mismatches: 6, Indels: 6
0.67 0.17 0.17
Matches are distributed among these distances:
13 10 0.42
16 14 0.58
ACGTcount: A:0.49, C:0.08, G:0.12, T:0.31
Consensus pattern (16 bp):
AAATGTTTTACAAACA
Found at i:42202568 original size:29 final size:29
Alignment explanation
Indices: 42202535--42202594 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
42202525 ACGAGAAAAC
42202535 ATGTTGTAAGGAAATGTTTTACAAACAAA
1 ATGTTGTAAGGAAATGTTTTACAAACAAA
42202564 ATGTTGTAAGGAAATGTTTTACAAACAAA
1 ATGTTGTAAGGAAATGTTTTACAAACAAA
42202593 AT
1 AT
42202595 TAGTAGCATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.45, C:0.07, G:0.17, T:0.32
Consensus pattern (29 bp):
ATGTTGTAAGGAAATGTTTTACAAACAAA
Found at i:42203456 original size:19 final size:18
Alignment explanation
Indices: 42203407--42203457 Score: 52
Period size: 17 Copynumber: 2.8 Consensus size: 18
42203397 GCATCACTTG
*
42203407 CTCAACGCATAATCCGAA
1 CTCAACGCATAATCCCAA
*
42203425 -TCAACG-TTGAATCACCAA
1 CTCAACGCAT-AATC-CCAA
42203443 CTCAACGCATAATCC
1 CTCAACGCATAATCC
42203458 AAAAATCCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 8
0.70 0.08 0.22
Matches are distributed among these distances:
16 1 0.04
17 10 0.38
18 4 0.15
19 10 0.38
20 1 0.04
ACGTcount: A:0.37, C:0.33, G:0.10, T:0.20
Consensus pattern (18 bp):
CTCAACGCATAATCCCAA
Found at i:42208263 original size:9 final size:9
Alignment explanation
Indices: 42208249--42208285 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
42208239 TATAGTTTGA
42208249 TATTCGAAT
1 TATTCGAAT
42208258 TATTCGAAT
1 TATTCGAAT
*
42208267 TATTCGAGT
1 TATTCGAAT
42208276 TATTCGAAT
1 TATTCGAAT
42208285 T
1 T
42208286 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:42208357 original size:9 final size:9
Alignment explanation
Indices: 42208340--42208370 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
42208330 TCGAGTTGAT
42208340 TCGAATAAC
1 TCGAATAAC
*
42208349 TCGATTAAC
1 TCGAATAAC
42208358 TCGAATAAC
1 TCGAATAAC
42208367 TCGA
1 TCGA
42208371 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:42215267 original size:138 final size:138
Alignment explanation
Indices: 42215019--42215440 Score: 702
Period size: 138 Copynumber: 3.1 Consensus size: 138
42215009 TTAGAAAAAA
* *
42215019 AATTATATTCTTTCCAAAA-AATTATTAATTTTCATGTCTTTTATATTTTCACCGGAATTAATTA
1 AATTATATTCTTTCCAAAAGAA-TATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTA
* *
42215083 ATATAACTATTTATATTAATAAATTCGGTAAAATATATAAAATTAATATTTTGTATGAATCAAAT
65 ATATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
42215148 TCATATATT
130 TCATATATT
* *
42215157 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
* *
42215222 TATACCTGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
*
42215287 AATATATT
131 CATATATT
* *
42215295 AACTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGATCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
* * *
42215360 AATAACTGTGTATATTAATAAATTCAGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
42215425 CATATATT
131 CATATATT
42215433 AATTATAT
1 AATTATAT
42215441 CTATGTTCTC
Statistics
Matches: 263, Mismatches: 20, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
138 261 0.99
139 2 0.01
ACGTcount: A:0.41, C:0.09, G:0.06, T:0.45
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAACTGTTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:42215341 original size:71 final size:71
Alignment explanation
Indices: 42215128--42215344 Score: 159
Period size: 71 Copynumber: 3.1 Consensus size: 71
42215118 TATAAAATTA
* * *
42215128 ATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATG
1 ATATTTTGTATGAATCAAATTAATATATTAACTATATTCTTTCCAAAAGAATATTAATTTTCATG
42215193 TCTTTT
66 TCTTTT
** * * * * * *
42215199 ATATTTTG-A-CCA--AAATTAAT-TAATATACCTGT-TTATATT--AATA-AATTTGGTAAAAT
1 ATATTTTGTATGAATCAAATTAATAT-AT-TAACTATATTCT-TTCCAAAAGAATAT--T-AATT
* * * *
42215255 AT-AT-ACAATTA
60 TTCATGTC-TTTT
42215266 ATATTTTGTATGAATCAAATTAATATATTAACTATATTCTTTCCAAAAGAATATTAATTTTCATG
1 ATATTTTGTATGAATCAAATTAATATATTAACTATATTCTTTCCAAAAGAATATTAATTTTCATG
42215331 TCTTTT
66 TCTTTT
42215337 ATATTTTG
1 ATATTTTG
42215345 ATCGAAATTA
Statistics
Matches: 101, Mismatches: 27, Indels: 36
0.62 0.16 0.22
Matches are distributed among these distances:
65 4 0.04
66 5 0.05
67 25 0.25
68 10 0.10
69 2 0.02
70 12 0.12
71 34 0.34
72 5 0.05
73 4 0.04
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (71 bp):
ATATTTTGTATGAATCAAATTAATATATTAACTATATTCTTTCCAAAAGAATATTAATTTTCATG
TCTTTT
Found at i:42216240 original size:18 final size:18
Alignment explanation
Indices: 42216213--42216253 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
42216203 GTATTGATTT
42216213 TGAC-ATCCTTATGTCAA
1 TGACAATCCTTATGTCAA
42216230 TGACAATCCTTATGTCAA
1 TGACAATCCTTATGTCAA
42216248 TGACAA
1 TGACAA
42216254 ATCTTTGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.32
Consensus pattern (18 bp):
TGACAATCCTTATGTCAA
Found at i:42222110 original size:25 final size:24
Alignment explanation
Indices: 42222082--42222153 Score: 108
Period size: 25 Copynumber: 2.9 Consensus size: 24
42222072 ATGTCACAAA
42222082 CCCGTGTGTCAGGATGTGTAACACG
1 CCCGTGTGTCAGGA-GTGTAACACG
*
42222107 CCCGTGTGTCAGGCCGTGTAACACG
1 CCCGTGTGTCAGG-AGTGTAACACG
42222132 CCCGTGTGTCAGGCAGTGTAAC
1 CCCGTGTGTCAGG-AGTGTAAC
42222154 TCTCGAAATA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.18, C:0.28, G:0.32, T:0.22
Consensus pattern (24 bp):
CCCGTGTGTCAGGAGTGTAACACG
Found at i:42222138 original size:13 final size:13
Alignment explanation
Indices: 42222097--42222138 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
42222087 GTGTCAGGAT
42222097 GTGTAACACGCCC
1 GTGTAACACGCCC
** *
42222110 GTGTGTCA-GGCC
1 GTGTAACACGCCC
42222122 GTGTAACACGCCC
1 GTGTAACACGCCC
42222135 GTGT
1 GTGT
42222139 GTCAGGCAGT
Statistics
Matches: 22, Mismatches: 6, Indels: 2
0.73 0.20 0.07
Matches are distributed among these distances:
12 9 0.41
13 13 0.59
ACGTcount: A:0.17, C:0.31, G:0.31, T:0.21
Consensus pattern (13 bp):
GTGTAACACGCCC
Found at i:42225193 original size:25 final size:25
Alignment explanation
Indices: 42225161--42225222 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
42225151 TTTTAGCTCT
42225161 TATGAGCTTACCAATACTCAACTCA
1 TATGAGCTTACCAATACTCAACTCA
* * *
42225186 TATGAGCTTACCATTATTCATCTCA
1 TATGAGCTTACCAATACTCAACTCA
* *
42225211 GAGGAGCTTACC
1 TATGAGCTTACC
42225223 GTTATTCAGC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.31
Consensus pattern (25 bp):
TATGAGCTTACCAATACTCAACTCA
Found at i:42225227 original size:25 final size:25
Alignment explanation
Indices: 42225189--42225250 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
42225179 CAACTCATAT
* * *
42225189 GAGCTTACCATTATTCATCTCAGAG
1 GAGCTTACCGTTATTCAGCTCAGAA
*
42225214 GAGCTTACCGTTATTCAGCTCGGAA
1 GAGCTTACCGTTATTCAGCTCAGAA
*
42225239 GAGCTGACCGTT
1 GAGCTTACCGTT
42225251 TACAACTCGT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (25 bp):
GAGCTTACCGTTATTCAGCTCAGAA
Found at i:42238861 original size:39 final size:39
Alignment explanation
Indices: 42238816--42238891 Score: 152
Period size: 39 Copynumber: 1.9 Consensus size: 39
42238806 TCCATTTAAA
42238816 CATTTAATTGATCTTATCAATATCCTATAACATGCATAT
1 CATTTAATTGATCTTATCAATATCCTATAACATGCATAT
42238855 CATTTAATTGATCTTATCAATATCCTATAACATGCAT
1 CATTTAATTGATCTTATCAATATCCTATAACATGCAT
42238892 GCTAACATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.36, C:0.18, G:0.05, T:0.41
Consensus pattern (39 bp):
CATTTAATTGATCTTATCAATATCCTATAACATGCATAT
Found at i:42241495 original size:24 final size:23
Alignment explanation
Indices: 42241443--42241533 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 23
42241433 TTTCATCATG
* *
42241443 TATTATGTATTCATATTTTTGAAAT
1 TATTATGTATT-AT-TATTTAAAAT
* *
42241468 TATTGTGCATTATTATTCTAAAAT
1 TATTATGTATTATTATT-TAAAAT
*
42241492 TATTATGTATTATTACTTAAAAGT
1 TATTATGTATTATTATTTAAAA-T
42241516 TA-TACTGTATTATTATTT
1 TATTA-TGTATTATTATTT
42241534 TTTATATTTG
Statistics
Matches: 55, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
23 10 0.18
24 36 0.65
25 9 0.16
ACGTcount: A:0.33, C:0.05, G:0.08, T:0.54
Consensus pattern (23 bp):
TATTATGTATTATTATTTAAAAT
Found at i:42250771 original size:21 final size:20
Alignment explanation
Indices: 42250747--42250800 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 20
42250737 AGCAACTTAT
42250747 TCTTCTTCAACAACAACTTCC
1 TCTTCTTCAACAACAACTT-C
* * *
42250768 TCTTCTGCAGCAGCAACTTC
1 TCTTCTTCAACAACAACTTC
42250788 T-TTC-TCAACAACA
1 TCTTCTTCAACAACA
42250801 GTGTCCTCTT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
18 6 0.22
19 3 0.11
20 2 0.07
21 16 0.59
ACGTcount: A:0.28, C:0.35, G:0.06, T:0.31
Consensus pattern (20 bp):
TCTTCTTCAACAACAACTTC
Found at i:42265565 original size:25 final size:25
Alignment explanation
Indices: 42265531--42265625 Score: 95
Period size: 25 Copynumber: 3.8 Consensus size: 25
42265521 TCATGTACAT
*
42265531 GTATGCTCATACGAGCTATGAATCA
1 GTATGCTCATACGAGCTATGAATCG
*** *
42265556 GTATGCTCATTTAAGATAT-AGATCG
1 GTATGCTCATACGAGCTATGA-ATCG
*
42265581 GTATGCTC-TCACGAGCTATAAATCG
1 GTATGCTCAT-ACGAGCTATGAATCG
*
42265606 GTATGCTCACACGAGCTATG
1 GTATGCTCATACGAGCTATG
42265626 GAGTGTCCGC
Statistics
Matches: 55, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
24 2 0.04
25 52 0.95
26 1 0.02
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.29
Consensus pattern (25 bp):
GTATGCTCATACGAGCTATGAATCG
Found at i:42268862 original size:11 final size:11
Alignment explanation
Indices: 42268846--42268870 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
42268836 TAGTCCCATA
42268846 AATAATAAAAT
1 AATAATAAAAT
42268857 AATAATAAAAT
1 AATAATAAAAT
42268868 AAT
1 AAT
42268871 TATTTTCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
AATAATAAAAT
Found at i:42269237 original size:40 final size:40
Alignment explanation
Indices: 42269172--42269298 Score: 191
Period size: 40 Copynumber: 3.2 Consensus size: 40
42269162 ATACTATTTG
* * * *
42269172 ATTCAGGGTTACCAAAGTATAAACAGAGGCACATATGTGC
1 ATTCAGGGGTACCGAAGTACAAACAGAGGCACGTATGTGC
* * *
42269212 ATTTAGGGGTACCGGAGTACAAACAGGGGCACGTATGTGC
1 ATTCAGGGGTACCGAAGTACAAACAGAGGCACGTATGTGC
42269252 ATTCAGGGGTACCGAAGTACAAACAGAGGCACGTATGTGC
1 ATTCAGGGGTACCGAAGTACAAACAGAGGCACGTATGTGC
42269292 ATTCAGG
1 ATTCAGG
42269299 CAATAATTAT
Statistics
Matches: 77, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 77 1.00
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.20
Consensus pattern (40 bp):
ATTCAGGGGTACCGAAGTACAAACAGAGGCACGTATGTGC
Found at i:42269258 original size:20 final size:20
Alignment explanation
Indices: 42269235--42269298 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
42269225 GGAGTACAAA
42269235 CAGGGGCACGTATGTGCATT
1 CAGGGGCACGTATGTGCATT
* * * **
42269255 CAGGGGTACCG-AAGTACAAA
1 CAGGGGCA-CGTATGTGCATT
*
42269275 CAGAGGCACGTATGTGCATT
1 CAGGGGCACGTATGTGCATT
42269295 CAGG
1 CAGG
42269299 CAATAATTAT
Statistics
Matches: 30, Mismatches: 12, Indels: 4
0.65 0.26 0.09
Matches are distributed among these distances:
19 2 0.07
20 26 0.87
21 2 0.07
ACGTcount: A:0.28, C:0.20, G:0.33, T:0.19
Consensus pattern (20 bp):
CAGGGGCACGTATGTGCATT
Found at i:42271995 original size:35 final size:35
Alignment explanation
Indices: 42271947--42272034 Score: 88
Period size: 35 Copynumber: 2.5 Consensus size: 35
42271937 CCCCTTTTGA
* * *
42271947 GGTGTTGCTCTAAAGGACATATATACCACTTACAC
1 GGTGTCGCCCTAAAGGACATACATACCACTTACAC
* * * * *
42271982 GGTGTCGCCCTAAACGACCTGCATATCATTTACAC
1 GGTGTCGCCCTAAAGGACATACATACCACTTACAC
42272017 GGTGTCG-CCTCAAAGGAC
1 GGTGTCGCCCT-AAAGGAC
42272035 CAATAGATAA
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
34 3 0.07
35 40 0.93
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (35 bp):
GGTGTCGCCCTAAAGGACATACATACCACTTACAC
Found at i:42277819 original size:41 final size:42
Alignment explanation
Indices: 42277742--42277845 Score: 124
Period size: 41 Copynumber: 2.5 Consensus size: 42
42277732 ACACTGATAC
* ** *
42277742 AAAGCCTGCTAGGCT-TAAAGCCTGATATGGTACACCGGTAT
1 AAAGCCTGCTAGGCTGTAAAGCCTGAAATAATACACCGGCAT
* * *
42277783 TAAGCCTGTTAGG-TGTAAAGCCTGAAATAATTCACCGGCAT
1 AAAGCCTGCTAGGCTGTAAAGCCTGAAATAATACACCGGCAT
42277824 AAAGCCTGCTAGGCTG-AAAGCC
1 AAAGCCTGCTAGGCTGTAAAGCC
42277846 CGATTATCAC
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
40 1 0.02
41 49 0.94
42 2 0.04
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.23
Consensus pattern (42 bp):
AAAGCCTGCTAGGCTGTAAAGCCTGAAATAATACACCGGCAT
Found at i:42279882 original size:27 final size:27
Alignment explanation
Indices: 42279852--42280035 Score: 111
Period size: 27 Copynumber: 6.9 Consensus size: 27
42279842 AAATTTCACT
*
42279852 ATACACATCATTCTCTTAGAGTTTGCC
1 ATACATATCATTCTCTTAGAGTTTGCC
* * * * *
42279879 ATACTTACCAGTCTTTTAGAGTTAGCC
1 ATACATATCATTCTCTTAGAGTTTGCC
* * * *
42279906 ACACATATAATTCTTTTAGAGTTTACC
1 ATACATATCATTCTCTTAGAGTTTGCC
* * * *
42279933 GTACTTACCATTCT-TTAGAGTTAGCC
1 ATACATATCATTCTCTTAGAGTTTGCC
* * * *
42279959 ATGCATATCATTCTCTCAGAGTTTACT
1 ATACATATCATTCTCTTAGAGTTTGCC
* * ** * *
42279986 GTACTTGCCATTCT-TTAGAATTAGCC
1 ATACATATCATTCTCTTAGAGTTTGCC
* * *
42280012 ATACATATCCTTCTTTTAGTGTTT
1 ATACATATCATTCTCTTAGAGTTT
42280036 TCTGTATTTA
Statistics
Matches: 109, Mismatches: 46, Indels: 4
0.69 0.29 0.03
Matches are distributed among these distances:
26 36 0.33
27 73 0.67
ACGTcount: A:0.26, C:0.22, G:0.12, T:0.41
Consensus pattern (27 bp):
ATACATATCATTCTCTTAGAGTTTGCC
Found at i:42279980 original size:53 final size:53
Alignment explanation
Indices: 42279852--42280035 Score: 224
Period size: 53 Copynumber: 3.5 Consensus size: 53
42279842 AAATTTCACT
* * * *
42279852 ATACACATCATTCTCTTAGAGTTTGCCATACTTACCAGTCTTTTAGAGTTAGCC
1 ATACATATCATTCTCTTAGAGTTTACCGTACTTACCATTC-TTTAGAGTTAGCC
* * *
42279906 ACACATATAATTCTTTTAGAGTTTACCGTACTTACCATTCTTTAGAGTTAGCC
1 ATACATATCATTCTCTTAGAGTTTACCGTACTTACCATTCTTTAGAGTTAGCC
* * * * *
42279959 ATGCATATCATTCTCTCAGAGTTTACTGTACTTGCCATTCTTTAGAATTAGCC
1 ATACATATCATTCTCTTAGAGTTTACCGTACTTACCATTCTTTAGAGTTAGCC
* * *
42280012 ATACATATCCTTCTTTTAGTGTTT
1 ATACATATCATTCTCTTAGAGTTT
42280036 TCTGTATTTA
Statistics
Matches: 110, Mismatches: 20, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
53 77 0.70
54 33 0.30
ACGTcount: A:0.26, C:0.22, G:0.12, T:0.41
Consensus pattern (53 bp):
ATACATATCATTCTCTTAGAGTTTACCGTACTTACCATTCTTTAGAGTTAGCC
Found at i:42280159 original size:54 final size:52
Alignment explanation
Indices: 42280097--42280267 Score: 147
Period size: 54 Copynumber: 3.2 Consensus size: 52
42280087 TAGATGATTG
*
42280097 CCACAAGGCCCTTCCTTTAGAATGCGCCACGAACGTGTTCCTTTCTATAGATC
1 CCACAAGGCCCTTCCTTTAGAATGTGCCACGAACGTGTTCCTTTC-ATAGATC
* * * *
42280150 CCACGAAGG--CTTCCACTTCATA-AAT-TGCCACAAAGGCAT-TTCC-TTCAGATGATTG
1 CCAC-AAGGCCCTT-C-CTT--TAGAATGTGCCACGAA--CGTGTTCCTTTCATA-GA-TC
42280205 CCACAAGGCCCTTCCTTTAGAATGTGCCACGAACGTGTTCCTTTCCATAGATC
1 CCACAAGGCCCTTCCTTTAGAATGTGCCACGAACGTGTTCCTTT-CATAGATC
42280258 CCACGAAGGC
1 CCAC-AAGGC
42280268 TTCCACTTCA
Statistics
Matches: 92, Mismatches: 9, Indels: 33
0.69 0.07 0.25
Matches are distributed among these distances:
52 7 0.08
53 19 0.21
54 43 0.47
55 16 0.17
56 7 0.08
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (52 bp):
CCACAAGGCCCTTCCTTTAGAATGTGCCACGAACGTGTTCCTTTCATAGATC
Found at i:42280202 original size:108 final size:108
Alignment explanation
Indices: 42280067--42280294 Score: 429
Period size: 108 Copynumber: 2.1 Consensus size: 108
42280057 TTTTAGGGTC
*
42280067 TGCCACAAAGGCATTTCCTTTAGATGATTGCCACAAGGCCCTTCCTTTAGAATGCGCCACGAACG
1 TGCCACAAAGGCATTTCCTTCAGATGATTGCCACAAGGCCCTTCCTTTAGAATGCGCCACGAACG
*
42280132 TGTTCCTTTCTATAGATCCCACGAAGGCTTCCACTTCATAAAT
66 TGTTCCTTTCCATAGATCCCACGAAGGCTTCCACTTCATAAAT
*
42280175 TGCCACAAAGGCATTTCCTTCAGATGATTGCCACAAGGCCCTTCCTTTAGAATGTGCCACGAACG
1 TGCCACAAAGGCATTTCCTTCAGATGATTGCCACAAGGCCCTTCCTTTAGAATGCGCCACGAACG
42280240 TGTTCCTTTCCATAGATCCCACGAAGGCTTCCACTTCATAAAT
66 TGTTCCTTTCCATAGATCCCACGAAGGCTTCCACTTCATAAAT
42280283 TGCCACAAAGGC
1 TGCCACAAAGGC
42280295 TTCCATTTCA
Statistics
Matches: 117, Mismatches: 3, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
108 117 1.00
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.27
Consensus pattern (108 bp):
TGCCACAAAGGCATTTCCTTCAGATGATTGCCACAAGGCCCTTCCTTTAGAATGCGCCACGAACG
TGTTCCTTTCCATAGATCCCACGAAGGCTTCCACTTCATAAAT
Found at i:42280287 original size:54 final size:54
Alignment explanation
Indices: 42280122--42280288 Score: 161
Period size: 54 Copynumber: 3.1 Consensus size: 54
42280112 TTTAGAATGC
*
42280122 GCCACGAACGTGTTCCTTTCTATAGATCCCACGAAGGCTTCCACTTCATAAATT
1 GCCACGAACGTGTTCCTTTCCATAGATCCCACGAAGGCTTCCACTTCATAAATT
* * * *
42280176 GCCACAAAGGCAT-TTCC-TT-CAGATGATTGCCAC-AAGGCCCTT-C-CTT--TAGAATGT
1 GCCACGAA--CGTGTTCCTTTCCATA-GA-TCCCACGAAGG--CTTCCACTTCATA-AAT-T
42280230 GCCACGAACGTGTTCCTTTCCATAGATCCCACGAAGGCTTCCACTTCATAAATT
1 GCCACGAACGTGTTCCTTTCCATAGATCCCACGAAGGCTTCCACTTCATAAATT
42280284 GCCAC
1 GCCAC
42280289 AAAGGCTTCC
Statistics
Matches: 88, Mismatches: 9, Indels: 32
0.68 0.07 0.25
Matches are distributed among these distances:
52 7 0.08
53 15 0.17
54 43 0.49
55 16 0.18
56 7 0.08
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.28
Consensus pattern (54 bp):
GCCACGAACGTGTTCCTTTCCATAGATCCCACGAAGGCTTCCACTTCATAAATT
Found at i:42280299 original size:27 final size:27
Alignment explanation
Indices: 42280150--42280353 Score: 93
Period size: 27 Copynumber: 7.6 Consensus size: 27
42280140 TCTATAGATC
*
42280150 CCACGAAGGCTTCCACTTCATAAATTG
1 CCACAAAGGCTTCCACTTCATAAATTG
* * *
42280177 CCACAAAGGCATTTC-CTTCAGATGATTG
1 CCACAAAGGC-TTCCACTTCATA-AATTG
42280205 CCAC-AAGGCCCTT-C-CTT--TAGAATGTG
1 CCACAAAGG--CTTCCACTTCATA-AAT-TG
* * * *
42280231 CCACGAACGTG-TTCC-TTTCCATAGA-TC
1 CCAC-AAAG-GCTTCCACTT-CATAAATTG
*
42280258 CCACGAAGGCTTCCACTTCATAAATTG
1 CCACAAAGGCTTCCACTTCATAAATTG
* ** *
42280285 CCACAAAGGCTTCCATTTCATTCATTT
1 CCACAAAGGCTTCCACTTCATAAATTG
* * * *
42280312 CCACAAGGGCTTCAATTTCATAGATTG
1 CCACAAAGGCTTCCACTTCATAAATTG
* *
42280339 TCACAAAGGCCTCCA
1 CCACAAAGGCTTCCA
42280354 TTTTCTGGCG
Statistics
Matches: 132, Mismatches: 30, Indels: 30
0.69 0.16 0.16
Matches are distributed among these distances:
25 4 0.03
26 19 0.14
27 89 0.67
28 15 0.11
29 3 0.02
30 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.28
Consensus pattern (27 bp):
CCACAAAGGCTTCCACTTCATAAATTG
Found at i:42280356 original size:27 final size:27
Alignment explanation
Indices: 42280263--42280356 Score: 100
Period size: 27 Copynumber: 3.5 Consensus size: 27
42280253 AGATCCCACG
* *
42280263 AAGGCTTCCACTTCATAAATTGCCACA
1 AAGGCTTCCATTTCATAAATTGTCACA
**
42280290 AAGGCTTCCATTTCATTCATT-TCCACA
1 AAGGCTTCCATTTCATAAATTGT-CACA
* * *
42280317 AGGGCTTCAATTTCATAGATTGTCACA
1 AAGGCTTCCATTTCATAAATTGTCACA
*
42280344 AAGGCCTCCATTT
1 AAGGCTTCCATTT
42280357 TCTGGCGTGT
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
27 53 0.98
28 1 0.02
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.32
Consensus pattern (27 bp):
AAGGCTTCCATTTCATAAATTGTCACA
Found at i:42288606 original size:50 final size:50
Alignment explanation
Indices: 42288480--42288813 Score: 266
Period size: 50 Copynumber: 6.6 Consensus size: 50
42288470 TGATAATAAC
* * * ** * * *
42288480 ATGCCAAAGTCATGTCCCAGACATGGTCTTACATGAGATGTTTCCTGT--
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG
* * * **
42288528 ACTGCCAATGCCATATCCTAGATATGGTCTTACATGGGAGTTCTCATATCG
1 A-TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG
* * ** *
42288579 ATGCCCATGCCATGTCCCAAACATGGTCTTACGGGGGACCTCTCAT-CCAG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATC-G
* * * * * *
42288629 GTGCCAACGCCATATCCCAAACATGGTCTTATATGGGACCTCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG
* *
42288679 ATGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATAATCTCAATG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---G
* *
42288735 ATGCCAATGCCATGTCCCAGACATGGTCTTACACT-GG--CTCACAAATCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACA-TGGGACCTCTCATATCG
* * *
42288783 ATGTCGATGCCATGTTCCAGACATGGTCTTA
1 ATGCCAATGCCATGTCCCAGACATGGTCTTA
42288814 TACGAGATCG
Statistics
Matches: 232, Mismatches: 42, Indels: 24
0.78 0.14 0.08
Matches are distributed among these distances:
48 30 0.13
49 37 0.16
50 118 0.51
51 4 0.02
53 3 0.01
54 5 0.02
56 34 0.15
57 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCG
Found at i:42296915 original size:25 final size:25
Alignment explanation
Indices: 42296881--42296930 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
42296871 AAGAAAGATC
42296881 AAAGAGATGGCATGATAGTCATATA
1 AAAGAGATGGCATGATAGTCATATA
42296906 AAAGAGATGGCATGATAGTCATATA
1 AAAGAGATGGCATGATAGTCATATA
42296931 CAACCTAGCG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.08, G:0.24, T:0.24
Consensus pattern (25 bp):
AAAGAGATGGCATGATAGTCATATA
Found at i:42300155 original size:79 final size:79
Alignment explanation
Indices: 42300055--42300211 Score: 307
Period size: 78 Copynumber: 2.0 Consensus size: 79
42300045 AAACCAAGAC
42300055 AAAGTTAAAGGTTAAGATTTTTTAAAATCGAAATGTCCCATCTCTTAAAATCCCTACCTTTAACT
1 AAAGTTAAAGGTTAAGATTTTTTAAAATCGAAATGTCCCATCTCTTAAAATCCCTACCTTTAACT
42300120 GAGCCCCATTACAA
66 GAGCCCCATTACAA
42300134 AAAGTTAAA-GTTAAGATTTTTTAAAATCGAAATGTCCCATCTCTTAAAATCCCTACCTTTAACT
1 AAAGTTAAAGGTTAAGATTTTTTAAAATCGAAATGTCCCATCTCTTAAAATCCCTACCTTTAACT
42300198 GAGCCCCATTACAA
66 GAGCCCCATTACAA
42300212 CCTTATAAAA
Statistics
Matches: 78, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
78 69 0.88
79 9 0.12
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.32
Consensus pattern (79 bp):
AAAGTTAAAGGTTAAGATTTTTTAAAATCGAAATGTCCCATCTCTTAAAATCCCTACCTTTAACT
GAGCCCCATTACAA
Found at i:42306361 original size:38 final size:38
Alignment explanation
Indices: 42306305--42306377 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
42306295 ATGTTAGTTG
42306305 TTATATAATTGAATGATGAATATCCAACAATGCCATGA
1 TTATATAATTGAATGATGAATATCCAACAATGCCATGA
* *
42306343 TTATTTAATTGAATGATGAATATCCAATAATGCCA
1 TTATATAATTGAATGATGAATATCCAACAATGCCA
42306378 AGATGGTTAC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.34
Consensus pattern (38 bp):
TTATATAATTGAATGATGAATATCCAACAATGCCATGA
Found at i:42310546 original size:16 final size:16
Alignment explanation
Indices: 42310503--42310546 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
42310493 ATAGCTGTAC
* *
42310503 TAGAGTTGTAAAGTAA
1 TAGAGTTGTAATGGAA
*
42310519 TAGAGCTGTAATGGAA
1 TAGAGTTGTAATGGAA
42310535 TAGAGTTGTAAT
1 TAGAGTTGTAAT
42310547 CAATAATTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.39, C:0.02, G:0.27, T:0.32
Consensus pattern (16 bp):
TAGAGTTGTAATGGAA
Found at i:42314648 original size:59 final size:57
Alignment explanation
Indices: 42314571--42314711 Score: 187
Period size: 59 Copynumber: 2.4 Consensus size: 57
42314561 TTATTATTAT
**
42314571 TAAATTTTAATAGGATTATTATTAAAAATAATTTAATAATAAATAATAAATAATTTAA
1 TAAATTTTAATAATATTATTATTAAAAATAATTTAATAA-AAATAATAAATAATTTAA
* * *
42314629 TCAAATTTTAATAATATTATTATTAAATATAATTTAATAAAAATAATATATGATTTAA
1 T-AAATTTTAATAATATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAA
42314687 TAATATTTTAAT-ATAATTATT-TTAA
1 TAA-ATTTTAATAAT-ATTATTATTAA
42314712 TATTAAATTA
Statistics
Matches: 75, Mismatches: 5, Indels: 7
0.86 0.06 0.08
Matches are distributed among these distances:
57 8 0.11
58 32 0.43
59 35 0.47
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.45
Consensus pattern (57 bp):
TAAATTTTAATAATATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAA
Found at i:42314697 original size:32 final size:32
Alignment explanation
Indices: 42314592--42314699 Score: 93
Period size: 32 Copynumber: 3.5 Consensus size: 32
42314582 AGGATTATTA
* *
42314592 TTAAAAATAATTTAATAATAAATAATAAATAAT
1 TTAATAATAATTTAATAA-AAATAATATATAAT
* * *
42314625 TTAATCA-AATTT--TAATAAT-AT-TATTAT
1 TTAATAATAATTTAATAAAAATAATATATAAT
* *
42314652 TAAAT-ATAATTTAATAAAAATAATATATGAT
1 TTAATAATAATTTAATAAAAATAATATATAAT
*
42314683 TTAATAATATTTTAATA
1 TTAATAATAATTTAATA
42314700 TAATTATTTT
Statistics
Matches: 59, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
26 1 0.02
27 13 0.22
28 2 0.03
29 9 0.15
30 5 0.08
31 9 0.15
32 15 0.25
33 5 0.08
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.44
Consensus pattern (32 bp):
TTAATAATAATTTAATAAAAATAATATATAAT
Found at i:42314699 original size:26 final size:25
Alignment explanation
Indices: 42314635--42314713 Score: 62
Period size: 26 Copynumber: 3.3 Consensus size: 25
42314625 TTAATCAAAT
*
42314635 TTTAATAATATTATTATTAAATATAA
1 TTTAATAATATT-TTAATAAATATAA
*
42314661 TTTAATAA-A----AATAATATATGA
1 TTTAATAATATTTTAATAA-ATATAA
*
42314682 TTTAATAATATTTTAATATAAT-TAT
1 TTTAATAATATTTTAATA-AATATAA
42314707 TTTAATA
1 TTTAATA
42314714 TTAAATTATA
Statistics
Matches: 42, Mismatches: 4, Indels: 15
0.69 0.07 0.25
Matches are distributed among these distances:
20 4 0.10
21 13 0.31
22 1 0.02
25 9 0.21
26 14 0.33
27 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (25 bp):
TTTAATAATATTTTAATAAATATAA
Found at i:42314730 original size:58 final size:58
Alignment explanation
Indices: 42314572--42314731 Score: 175
Period size: 58 Copynumber: 2.7 Consensus size: 58
42314562 TATTATTATT
** * *
42314572 AAATTTTAATAGGATTATTATTAAAAATAATTTAATAATAAATAATAAATAATTTAATC
1 AAATTTTAATAATATTATTATTAAATATAAATTAATAA-AAATAATAAATAATTTAATC
* * *
42314631 AAATTTTAATAATATTATTATTAAATATAATTTAATAAAAATAATATATGATTTAAT-
1 AAATTTTAATAATATTATTATTAAATATAAATTAATAAAAATAATAAATAATTTAATC
*
42314688 AATATTTTAAT-ATAATTATT-TT-AATATTAAATTATATTAAAATA
1 AA-ATTTTAATAAT-ATTATTATTAAATA-TAAATTA-ATAAAAATA
42314732 TTTAAAATAT
Statistics
Matches: 90, Mismatches: 7, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
56 4 0.04
57 12 0.13
58 39 0.43
59 35 0.39
ACGTcount: A:0.53, C:0.01, G:0.02, T:0.45
Consensus pattern (58 bp):
AAATTTTAATAATATTATTATTAAATATAAATTAATAAAAATAATAAATAATTTAATC
Found at i:42315521 original size:6 final size:6
Alignment explanation
Indices: 42315492--42315534 Score: 56
Period size: 6 Copynumber: 7.7 Consensus size: 6
42315482 TATTAAATAA
*
42315492 ATTTTT A-TTTT A-TTTT A-TTCT ATTTTT ATTTTT ATTTTT ATTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTT
42315535 AAATTTAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
5 14 0.41
6 20 0.59
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (6 bp):
ATTTTT
Found at i:42316707 original size:16 final size:16
Alignment explanation
Indices: 42316688--42316718 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
42316678 ATTAAAAATA
*
42316688 ATTTTTTTATAAAAAC
1 ATTTTTATATAAAAAC
42316704 ATTTTTATATAAAAA
1 ATTTTTATATAAAAA
42316719 ATACAAATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
ATTTTTATATAAAAAC
Found at i:42318483 original size:22 final size:22
Alignment explanation
Indices: 42318458--42318507 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
42318448 AATCAAAAAT
42318458 ATTTAATTGAGTCT-TCAATCGA
1 ATTTAATTGAGTCTCTC-ATCGA
*
42318480 ATTTAATTGAGTCTCTCATTGA
1 ATTTAATTGAGTCTCTCATCGA
42318502 ATTTAA
1 ATTTAA
42318508 ACAATCAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 24 0.92
23 2 0.08
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (22 bp):
ATTTAATTGAGTCTCTCATCGA
Found at i:42318809 original size:13 final size:13
Alignment explanation
Indices: 42318793--42318824 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
42318783 ATGTTTTATA
42318793 AAAATTTCATTTT
1 AAAATTTCATTTT
42318806 AAAATTTCATTTT
1 AAAATTTCATTTT
42318819 AAAATT
1 AAAATT
42318825 AAATGAGGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (13 bp):
AAAATTTCATTTT
Found at i:42319385 original size:22 final size:19
Alignment explanation
Indices: 42319353--42319399 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 19
42319343 TTAAATTCTA
42319353 TTTT-TTATTTTTAAATGATT
1 TTTTATTATTTTT-AAT-ATT
42319373 TTTCTATTATTTTTAATATT
1 TTT-TATTATTTTTAATATT
42319393 TTTTATT
1 TTTTATT
42319400 TTTATGATGT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 4 0.16
20 9 0.36
21 4 0.16
22 8 0.32
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (19 bp):
TTTTATTATTTTTAATATT
Found at i:42319594 original size:30 final size:30
Alignment explanation
Indices: 42319554--42319614 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
42319544 AGACGAGGGC
* * *
42319554 TTAAATTTGATTGAGGATTTAATTGAATAT
1 TTAAACTTGATTGAGGACTCAATTGAATAT
*
42319584 TTAAACTTGATTGAGGGCTCAATTGAATAT
1 TTAAACTTGATTGAGGACTCAATTGAATAT
42319614 T
1 T
42319615 GTTTTTAATT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.05, G:0.18, T:0.43
Consensus pattern (30 bp):
TTAAACTTGATTGAGGACTCAATTGAATAT
Found at i:42326578 original size:475 final size:469
Alignment explanation
Indices: 42325682--42326579 Score: 1314
Period size: 495 Copynumber: 1.9 Consensus size: 469
42325672 GGTTTCGAGA
* *
42325682 CAAAAAAATTATTTTATTATTATTTTATTTCCTACAACTTGATGGTAGTACAACACAAAAATTTT
1 CAAAAAAATTATTTTATTATTATTTTATTTCCTACAACATGATAGTAGTACAACACAAAAATTTT
42325747 GAAATTTTACCGTTTACATGCTCAATTTGATAAAAAGGACTAAATCGCGTAGTTGAGTTCTAATA
66 GAAATTTTACCGTTTACATGCTCAATTTGATAAAAAGGACTAAATCGCGTAGTTGAGTTCTAATA
42325812 GCTAAAGGTATTAAATAGCTATAGAAATTTAAATTGGAAGTCCTTATAAGGAATTTAGACCATTA
131 GCTAAAGGTATTAAATAGCTATAGAAATTTAAATTGGAAGTCCTTATAAGGAATTTAGACCATTA
42325877 GAGTTGATAGTGGATTTTAATGGCTTGGAATTTGTGTAAGTTTTAAAGTTTTCAAAGGTTAATTA
196 GAGTTGATAGTGGATTTTAATGGCTTGGAATTTGTGTAAGTTTTAAAGTTTTCAAAGGTTAATTA
42325942 AGTAAATTGGTAATTAATGATTATTATAATAAAACAAATTAAGTTACCATCTTTCTTTCATCACT
261 AGTAAATTGG-----AATGA-TATTATAAT-----AAATTAAGTTACCATCTTTCTTTCATCACT
* *
42326007 TTCAACTGAAAGTTAGGGATTTGGAAGCTAGTTTTGTGCTTAAGCATTCGGCAATCTCATTCTTG
315 TTCAACTGAAAGTTAGGGATTTGGAAGCTACTTTTGTGCTTAAGCATTCGGAAATCTCATTCTTG
42326072 CCTATTTGGTATGTATTTTTGTCTCGTTTTTAAAAATTTCCCGTTTTTAGTAAAATCGGAATAGT
380 CCTATTTGGTATGTATTTTTGTCTCGTTTTTAAAAATTTCCCGTTTTTAGTAAAATCGGAATAGT
42326137 GATTTTGGGACCACAAATTCGAAGT
445 GATTTTGGGACCACAAATTCGAAGT
* * * **
42326162 CAAAAAATTTATTTTATTATTATTTTATTTTCTACAGCATGATAGTAGTACCGCACAAAAATTTC
1 CAAAAAAATTATTTTATTATTATTTTATTTCCTACAACATGATAGTAGTACAACACAAAAA-TT-
*
42326227 GTTAGAAAATTTTACCGTTTACATGCTCAATTTGATAAAAATGACTAAATCGCGTAAAGTGCAAA
64 -TT-G-AAATTTTACCGTTTACATGCTCAATTTGATAAAAAGGACTAAATCGC-----GT-----
* *
42326292 AGTTGAGTTCTAATAGTTAAAGGTATTAAATAGCTATAGAACTTTAAATTGGAAGTCCTTATAAA
116 AGTTGAGTTCTAATAGCTAAAGGTATTAAATAGCTATAGAAATTTAAATTGGAAGTCCTTAT-AA
* *
42326357 GTAA-TTAGACCATTAGAGTTGATAGTGGATTTTAATGGCTTGGAATTTGTGTAATTTTTAAAGT
180 GGAATTTAGACCATTAGAGTTGATAGTGGATTTTAATGGCTTGGAATTTGTGTAAGTTTTAAAGT
* *
42326421 TTTTAAAGGTTAATTAAGTAAATT-G-AT-A-A-T-TAAT-GATT-A-TTACCATCTTTCTTTCA
245 TTTCAAAGGTTAATTAAGTAAATTGGAATGATATTATAATAAATTAAGTTACCATCTTTCTTTCA
*
42326477 TCACTTTCAACTGAAAGTTAGGGATTTGGAAGCTACTTTTGTGCTTAAGCATTTGGAAATCTCAT
310 TCACTTTCAACTGAAAGTTAGGGATTTGGAAGCTACTTTTGTGCTTAAGCATTCGGAAATCTCAT
42326542 TCTTGCCTATTTGGTATGTATTTTTGTC-CAGTTTTTAA
375 TCTTGCCTATTTGGTATGTATTTTTGTCTC-GTTTTTAA
42326580 TTATTTCTAT
Statistics
Matches: 384, Mismatches: 17, Indels: 39
0.87 0.04 0.09
Matches are distributed among these distances:
474 1 0.00
475 115 0.30
476 1 0.00
477 3 0.01
480 54 0.14
481 2 0.01
483 6 0.02
484 2 0.01
485 47 0.12
487 1 0.00
488 2 0.01
490 2 0.01
494 1 0.00
495 142 0.37
496 5 0.01
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.39
Consensus pattern (469 bp):
CAAAAAAATTATTTTATTATTATTTTATTTCCTACAACATGATAGTAGTACAACACAAAAATTTT
GAAATTTTACCGTTTACATGCTCAATTTGATAAAAAGGACTAAATCGCGTAGTTGAGTTCTAATA
GCTAAAGGTATTAAATAGCTATAGAAATTTAAATTGGAAGTCCTTATAAGGAATTTAGACCATTA
GAGTTGATAGTGGATTTTAATGGCTTGGAATTTGTGTAAGTTTTAAAGTTTTCAAAGGTTAATTA
AGTAAATTGGAATGATATTATAATAAATTAAGTTACCATCTTTCTTTCATCACTTTCAACTGAAA
GTTAGGGATTTGGAAGCTACTTTTGTGCTTAAGCATTCGGAAATCTCATTCTTGCCTATTTGGTA
TGTATTTTTGTCTCGTTTTTAAAAATTTCCCGTTTTTAGTAAAATCGGAATAGTGATTTTGGGAC
CACAAATTCGAAGT
Found at i:42328038 original size:25 final size:25
Alignment explanation
Indices: 42327999--42328056 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
42327989 TGGCTAATGT
*
42327999 TGGCCATATGTTTTGG-TTGTTGTTA
1 TGGCCATATGATTTGGCTTG-TGTTA
* *
42328024 TGGCCATTTGATTTGGCTTGTGTTT
1 TGGCCATATGATTTGGCTTGTGTTA
42328049 TGG-CATAT
1 TGGCCATAT
42328057 TTTGGTATGT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
24 4 0.14
25 21 0.75
26 3 0.11
ACGTcount: A:0.12, C:0.10, G:0.28, T:0.50
Consensus pattern (25 bp):
TGGCCATATGATTTGGCTTGTGTTA
Found at i:42334924 original size:25 final size:25
Alignment explanation
Indices: 42334893--42334962 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 25
42334883 TGTTCTGACC
*
42334893 CACAACTCGTGTGAGTATACCAATT
1 CACAACTCGTGTGAGCATACCAATT
* * * *
42334918 TACAACTGGTGGGAGCATACCGATT
1 CACAACTCGTGTGAGCATACCAATT
* * *
42334943 CACAGCTTGTGTGAGGATAC
1 CACAACTCGTGTGAGCATAC
42334963 AAGTACAAGA
Statistics
Matches: 35, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (25 bp):
CACAACTCGTGTGAGCATACCAATT
Found at i:42339660 original size:9 final size:7
Alignment explanation
Indices: 42339616--42339653 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
42339606 TGAGAGGTAA
*
42339616 GAGAGTT
1 GAGAGAT
42339623 GAGAGA-
1 GAGAGAT
42339629 GAG-GAT
1 GAGAGAT
42339635 GAGAGAT
1 GAGAGAT
42339642 GAGAGAT
1 GAGAGAT
42339649 GAGAG
1 GAGAG
42339654 GCATGAGGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
5 2 0.07
6 6 0.21
7 20 0.71
ACGTcount: A:0.39, C:0.00, G:0.47, T:0.13
Consensus pattern (7 bp):
GAGAGAT
Found at i:42341459 original size:25 final size:25
Alignment explanation
Indices: 42341425--42341475 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
42341415 CAATGCGCCT
*
42341425 TAGTTGCAAGATTCGGTTTCTTGGA
1 TAGTTGCAAGATTCGATTTCTTGGA
42341450 TAGTTGCAAGATTCGATTTCTTGGA
1 TAGTTGCAAGATTCGATTTCTTGGA
42341475 T
1 T
42341476 CAAGATTTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.22, C:0.12, G:0.25, T:0.41
Consensus pattern (25 bp):
TAGTTGCAAGATTCGATTTCTTGGA
Found at i:42344606 original size:20 final size:18
Alignment explanation
Indices: 42344583--42344630 Score: 51
Period size: 21 Copynumber: 2.4 Consensus size: 18
42344573 GAATTTGAAT
42344583 AATAATACATGAAAACTTAA
1 AATAATACA--AAAACTTAA
42344603 AATATATGAACAAAAACTTAA
1 AATA-AT--ACAAAAACTTAA
42344624 AATAATA
1 AATAATA
42344631 ATGTACGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
18 1 0.04
20 6 0.24
21 15 0.60
23 3 0.12
ACGTcount: A:0.62, C:0.08, G:0.04, T:0.25
Consensus pattern (18 bp):
AATAATACAAAAACTTAA
Found at i:42346314 original size:44 final size:45
Alignment explanation
Indices: 42346264--42346363 Score: 123
Period size: 44 Copynumber: 2.3 Consensus size: 45
42346254 AATTCGACCT
* * * * *
42346264 ACTGCAACTTCAAAGG-TATAGGATTTGTTGTTTTAATACGCTCC
1 ACTGCAACTTCAAAGGAGATAGGATTGGTGGCTTCAATACGCTCC
* *
42346308 ACTGCAACTTC-AAGGAGATAGGATTGGTGGCTTCAATATGCTTC
1 ACTGCAACTTCAAAGGAGATAGGATTGGTGGCTTCAATACGCTCC
42346352 ACTGCAACTTCA
1 ACTGCAACTTCA
42346364 GGAAGATAAG
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
43 4 0.09
44 43 0.91
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (45 bp):
ACTGCAACTTCAAAGGAGATAGGATTGGTGGCTTCAATACGCTCC
Found at i:42346457 original size:51 final size:51
Alignment explanation
Indices: 42346392--42347249 Score: 895
Period size: 51 Copynumber: 16.8 Consensus size: 51
42346382 TAATTTTTCT
* * * * *
42346392 CTTTAATCTATTCCATTGCAACGCTAGGGAAATAAGGTTTGCTGCCTTCAG
1 CTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAG
* * *
42346443 CTTTAATCTGTTCCACTACAAGGCTAGGGAAATAAGATTCGCTG---T---
1 CTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAG
* * ** * *** *
42346488 CTTTAGTCT-TCTCCACTACAACTTCA-GGAAGATAAGATCCGCCATATTTTGTAG
1 CTTTAATCTGT-TCCACTGCAACGCCAGGGAA-ATAAGATTCG-C-TGCCTT-CAG
* *** * * * *
42346542 CTTTAATCTATTCTGTTCCAATGCTAGGGAAATAAGATTCGCTACCTTCAG
1 CTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAG
** *
42346593 CTTTAATCCATTCCACTGCAACGCCAGGGAAATAAGATTCGTTGCCTTCAG
1 CTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAG
* * *
42346644 CTTTAATCTGTTCCACTGCAACGCCAGAGAAATAAGATTCGTTGCCTTTAG
1 CTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAG
* * * * * *
42346695 CTTTAATCTGCTCCACTGGAATGCCAGGGAAATAAGATTCACTACCTTTAG
1 CTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAG
* * *
42346746 CTTTAATCTATTCCACTGCAACACTAGGGAAATAAGATTCGCTGCCTTCAG
1 CTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAG
* * * * *
42346797 CTTTAATCTGTTCCACTGCAGCGCCAAGGAAACAAGAGTCGCTGCCTTTAG
1 CTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAG
* * * * *
42346848 CTTTAATCTATTCCACTTCAACACCAGGGAAACAAGATTTGCTGCCTTCAG
1 CTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAG
* * *
42346899 CTTTAATCTGTTCCACTGTAACGCCAGGGAAAAAAGATTCGCTGCCTTTAG
1 CTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAG
* * * * * * *
42346950 CTTTAATTTGTTCCATTGCAATGCCAAGGAAAAAAAGATTCACTGCCTTCAA
1 CTTTAATCTGTTCCACTGCAACGCC-AGGGAAATAAGATTCGCTGCCTTCAG
* * * * * *
42347002 CTTTAATCTGTTCCATTGCAATGCCAAGGAAAAAAGATTCACTGCCTTTAG
1 CTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAG
* * * *
42347053 CTTTAATCTATTCCATTGCAATGCCAGGGAAATAAGATTCGCTGGCTTCAG
1 CTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAG
* * *
42347104 CTTTAATCTGTTCCACTGCAATGCCAAGGAAATAAGATTCGCTACCTTCAG
1 CTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAG
* * *
42347155 CTTTAATCTGTTCCACTGCAACACCAGGGAAAAAAAGATTTGCTGCCTTCAG
1 CTTTAATCTGTTCCACTGCAACGCCAGGG-AAATAAGATTCGCTGCCTTCAG
* *
42347207 CTTTAATTTGTTCCACTGCAACGCCAGGGAAATAATATTCGCT
1 CTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCT
42347250 ATAATGACTT
Statistics
Matches: 679, Mismatches: 113, Indels: 30
0.83 0.14 0.04
Matches are distributed among these distances:
44 5 0.01
45 28 0.04
46 1 0.00
47 1 0.00
48 1 0.00
50 1 0.00
51 516 0.76
52 96 0.14
53 1 0.00
54 24 0.04
55 5 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (51 bp):
CTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTCGCTGCCTTCAG
Found at i:42346530 original size:150 final size:150
Alignment explanation
Indices: 42346351--42346633 Score: 415
Period size: 150 Copynumber: 1.9 Consensus size: 150
42346341 CAATATGCTT
* ** *
42346351 CACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTT-TCTCTTTAATCTATTCCATTGCAACG
1 CACTACAACTTCAGGAAGATAAGATCCGCCAT-ATTTTGTAGCTTTAATCTATTCCATTCCAACG
* * * ** * *
42346415 CTAGGGAAATAAGGTTTGCTGCCTTCAGCTTTAATCTGTTCCACTACAAGGCTAGGGAAATAAGA
65 CTAGGGAAATAAGATTCGCTACCTTCAGCTTTAATCCATTCCACTACAACGCCAGGGAAATAAGA
42346480 TTCGCTGTCTTTAGTCTTCTC
130 TTCGCTGTCTTTAGTCTTCTC
** *
42346501 CACTACAACTTCAGGAAGATAAGATCCGCCATATTTTGTAGCTTTAATCTATTCTGTTCCAATGC
1 CACTACAACTTCAGGAAGATAAGATCCGCCATATTTTGTAGCTTTAATCTATTCCATTCCAACGC
*
42346566 TAGGGAAATAAGATTCGCTACCTTCAGCTTTAATCCATTCCACTGCAACGCCAGGGAAATAAGAT
66 TAGGGAAATAAGATTCGCTACCTTCAGCTTTAATCCATTCCACTACAACGCCAGGGAAATAAGAT
42346631 TCG
131 TCG
42346634 TTGCCTTCAG
Statistics
Matches: 117, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
149 5 0.04
150 112 0.96
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (150 bp):
CACTACAACTTCAGGAAGATAAGATCCGCCATATTTTGTAGCTTTAATCTATTCCATTCCAACGC
TAGGGAAATAAGATTCGCTACCTTCAGCTTTAATCCATTCCACTACAACGCCAGGGAAATAAGAT
TCGCTGTCTTTAGTCTTCTC
Found at i:42348526 original size:47 final size:49
Alignment explanation
Indices: 42348475--42348589 Score: 155
Period size: 48 Copynumber: 2.4 Consensus size: 49
42348465 GTCCTTTGCG
* * *
42348475 GGTTTTCACCTTGG-CTCTTTTTTTTTGGACTCAAAGTGCCATTTG-TT
1 GGTTTTCACCTTGGTCTCTTTTTTTTAGGACTCAAAGCGCCATTTGCAT
* * *
42348522 GGTTTTCGCCTTGGTCTCTTTTTTTTAGGACTTAAAGCGCCTTTTGCAT
1 GGTTTTCACCTTGGTCTCTTTTTTTTAGGACTCAAAGCGCCATTTGCAT
42348571 -GTTTTCACCTTGGTCTCTT
1 GGTTTTCACCTTGGTCTCTT
42348590 CTCCTTCTTT
Statistics
Matches: 59, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
47 13 0.22
48 45 0.76
49 1 0.02
ACGTcount: A:0.11, C:0.21, G:0.19, T:0.49
Consensus pattern (49 bp):
GGTTTTCACCTTGGTCTCTTTTTTTTAGGACTCAAAGCGCCATTTGCAT
Found at i:42349027 original size:7 final size:7
Alignment explanation
Indices: 42349015--42349084 Score: 68
Period size: 7 Copynumber: 9.4 Consensus size: 7
42349005 TCGGTAGAGG
42349015 TTTTTGT
1 TTTTTGT
42349022 TTTTTGT
1 TTTTTGT
42349029 TTTTTGT
1 TTTTTGT
*
42349036 TGTTTGT
1 TTTTTGT
*
42349043 TTTGTTAT
1 TTT-TTGT
*
42349051 TTTGTTAT
1 TTT-TTGT
*
42349059 TTTGTTTT
1 TTT-TTGT
42349067 TTTTTGT
1 TTTTTGT
42349074 CTTTTTGT
1 -TTTTTGT
42349082 TTT
1 TTT
42349085 CTATTTTTTC
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
7 28 0.50
8 28 0.50
ACGTcount: A:0.03, C:0.01, G:0.14, T:0.81
Consensus pattern (7 bp):
TTTTTGT
Found at i:42349032 original size:8 final size:8
Alignment explanation
Indices: 42349015--42349084 Score: 61
Period size: 9 Copynumber: 8.2 Consensus size: 8
42349005 TCGGTAGAGG
42349015 TTTTTG-T
1 TTTTTGTT
42349022 TTTTTGTTT
1 TTTTTG-TT
42349031 TTTGTTGTT
1 TTT-TTGTT
42349040 TGTTTTGTT
1 T-TTTTGTT
*
42349049 ATTTTGTT
1 TTTTTGTT
*
42349057 ATTTTGTTTT
1 -TTTT-TGTT
*
42349067 TTTTTGTC
1 TTTTTGTT
42349075 TTTTTGTT
1 TTTTTGTT
42349083 TT
1 TT
42349085 CTATTTTTTC
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
7 6 0.12
8 18 0.35
9 19 0.37
10 8 0.16
ACGTcount: A:0.03, C:0.01, G:0.14, T:0.81
Consensus pattern (8 bp):
TTTTTGTT
Found at i:42349047 original size:26 final size:24
Alignment explanation
Indices: 42349015--42349093 Score: 95
Period size: 26 Copynumber: 3.1 Consensus size: 24
42349005 TCGGTAGAGG
42349015 TTTTTGTTTTTTGTTTTTTGTTGTT
1 TTTTTGTTTTTTGTTTTTTGTT-TT
42349040 TGTTTTGTTATTTTGTTATTTTGTTTT
1 T-TTTTGTT-TTTTGTT-TTTTGTTTT
* *
42349067 TTTTTGTCTTTTTGTTTTCTATTTT
1 TTTTTGT-TTTTTGTTTTTTGTTTT
42349092 TT
1 TT
42349094 CTCTACTGCC
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
25 10 0.21
26 20 0.42
27 11 0.23
28 7 0.15
ACGTcount: A:0.04, C:0.03, G:0.13, T:0.81
Consensus pattern (24 bp):
TTTTTGTTTTTTGTTTTTTGTTTT
Found at i:42349053 original size:20 final size:20
Alignment explanation
Indices: 42349023--42349071 Score: 66
Period size: 19 Copynumber: 2.5 Consensus size: 20
42349013 GGTTTTTGTT
42349023 TTTTGTTTTTTGTT-GTTTG
1 TTTTGTTTTTTGTTAGTTTG
*
42349042 TTTTGTTATTTTGTTATTTTG
1 TTTTGTT-TTTTGTTAGTTTG
42349063 TTTT-TTTTT
1 TTTTGTTTTT
42349072 GTCTTTTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 10 0.37
20 9 0.33
21 8 0.30
ACGTcount: A:0.04, C:0.00, G:0.14, T:0.82
Consensus pattern (20 bp):
TTTTGTTTTTTGTTAGTTTG
Found at i:42353529 original size:16 final size:16
Alignment explanation
Indices: 42353504--42353537 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
42353494 TTTTAAGATG
*
42353504 AAATGTCATGCAATCA
1 AAATGCCATGCAATCA
42353520 AAATGCCATGCAATCA
1 AAATGCCATGCAATCA
42353536 AA
1 AA
42353538 GCAAAACACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.21, G:0.12, T:0.21
Consensus pattern (16 bp):
AAATGCCATGCAATCA
Found at i:42355170 original size:20 final size:20
Alignment explanation
Indices: 42355121--42355194 Score: 62
Period size: 21 Copynumber: 3.5 Consensus size: 20
42355111 TAAAAATATA
* *
42355121 TAAAATAATGCATGATGAACT
1 TAAAATAATACATGA-AAACT
42355142 TGAATAATAATACATGAAAACT
1 T-AA-AATAATACATGAAAACT
42355164 TAAAATATATGAACA--AAAACT
1 TAAAATA-AT--ACATGAAAACT
42355185 TAAAATAATA
1 TAAAATAATA
42355195 ATGTATGATA
Statistics
Matches: 46, Mismatches: 2, Indels: 13
0.75 0.03 0.21
Matches are distributed among these distances:
18 1 0.02
20 6 0.13
21 18 0.39
22 7 0.15
23 14 0.30
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.27
Consensus pattern (20 bp):
TAAAATAATACATGAAAACT
Found at i:42364902 original size:16 final size:17
Alignment explanation
Indices: 42364875--42364910 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
42364865 AGAGAGTTGA
42364875 GAGAGAGGATGAGAGAT
1 GAGAGAGGATGAGAGAT
*
42364892 GAGAG-GGATGAGGGAT
1 GAGAGAGGATGAGAGAT
42364908 GAG
1 GAG
42364911 GGATGATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 13 0.72
17 5 0.28
ACGTcount: A:0.36, C:0.00, G:0.53, T:0.11
Consensus pattern (17 bp):
GAGAGAGGATGAGAGAT
Found at i:42372101 original size:16 final size:16
Alignment explanation
Indices: 42372080--42372149 Score: 59
Period size: 16 Copynumber: 4.1 Consensus size: 16
42372070 TCCAAAAATA
*
42372080 ATATTATTTTAATATT
1 ATATTAATTTAATATT
* *
42372096 ATATTAATTTAATCTA
1 ATATTAATTTAATATT
*
42372112 ATACTTATCTTGATAAATATT
1 ATA-TTA-ATT--T-AATATT
42372133 ATATTAATTTAATATT
1 ATATTAATTTAATATT
42372149 A
1 A
42372150 AAGTGATTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
16 23 0.55
17 4 0.10
18 2 0.05
19 2 0.05
20 4 0.10
21 7 0.17
ACGTcount: A:0.41, C:0.04, G:0.01, T:0.53
Consensus pattern (16 bp):
ATATTAATTTAATATT
Found at i:42379206 original size:6 final size:6
Alignment explanation
Indices: 42379174--42379263 Score: 62
Period size: 6 Copynumber: 15.2 Consensus size: 6
42379164 GACCCCCTTT
* * *
42379174 ATTAAA A-T-AA A-TAAA ACTAAC ATTAAA ATTAAA AATAAA GATTAAA
1 ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA ATTAAA -ATTAAA
* * * *
42379220 ATTAAA ATTAAA GA-CAAA GATAAAA ATTAAA AATAAA AATAAA A
1 ATTAAA ATTAAA -ATTAAA -ATTAAA ATTAAA ATTAAA ATTAAA A
42379264 CAAAGAAAAG
Statistics
Matches: 70, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
4 4 0.06
5 4 0.06
6 53 0.76
7 9 0.13
ACGTcount: A:0.70, C:0.03, G:0.03, T:0.23
Consensus pattern (6 bp):
ATTAAA
Found at i:42379227 original size:25 final size:25
Alignment explanation
Indices: 42379182--42379262 Score: 101
Period size: 25 Copynumber: 3.3 Consensus size: 25
42379172 TTATTAAAAT
* *
42379182 AAATAAA-ACTAACATTAAAATTAA
1 AAATAAAGATTAAAATTAAAATTAA
42379206 AAATAAAGATTAAAATTAAAATTAA
1 AAATAAAGATTAAAATTAAAATTAA
* * * *
42379231 AGACAAAGATAAAAATTAAAAATAA
1 AAATAAAGATTAAAATTAAAATTAA
42379256 AAATAAA
1 AAATAAA
42379263 ACAAAGAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
24 7 0.15
25 41 0.85
ACGTcount: A:0.70, C:0.04, G:0.04, T:0.22
Consensus pattern (25 bp):
AAATAAAGATTAAAATTAAAATTAA
Found at i:42379261 original size:19 final size:19
Alignment explanation
Indices: 42379197--42379263 Score: 73
Period size: 19 Copynumber: 3.6 Consensus size: 19
42379187 AAACTAACAT
*
42379197 TAAAATTAAAAA-TAAAGA
1 TAAAAATAAAAATTAAAGA
* *
42379215 TTAAAATTAAAATTAAAGA
1 TAAAAATAAAAATTAAAGA
* * *
42379234 CAAAGATAAAAATTAAAAA
1 TAAAAATAAAAATTAAAGA
42379253 TAAAAATAAAA
1 TAAAAATAAAA
42379264 CAAAGAAAAG
Statistics
Matches: 38, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
18 9 0.24
19 29 0.76
ACGTcount: A:0.72, C:0.01, G:0.04, T:0.22
Consensus pattern (19 bp):
TAAAAATAAAAATTAAAGA
Found at i:42389487 original size:27 final size:25
Alignment explanation
Indices: 42389449--42389946 Score: 451
Period size: 27 Copynumber: 18.6 Consensus size: 25
42389439 TATGACCATT
42389449 TAGGGTAAAATGATCGAAATACCCGCA
1 TAGGGTAAAATGA-CGAAATACCC-CA
*
42389476 TAGGGTAAAATGATCGCAATACCCCCA
1 TAGGGTAAAATGA-CGAAATA-CCCCA
* * *
42389503 CAAGGTAAAATGACTGAAATTCTCCCA
1 TAGGGTAAAATGAC-GAAATAC-CCCA
42389530 TAGGGT-AAATGACCGAAATACCCCCA
1 TAGGGTAAAATGA-CGAAATA-CCCCA
* *
42389556 TAGGGTATAATGACTGAAATAACCTCA
1 TAGGGTAAAATGAC-GAAAT-ACCCCA
*
42389583 TAGGGTAAAATGACAAAAATACCCCCA
1 TAGGGTAAAATGAC-GAAATA-CCCCA
* *
42389610 TAGGGTAAAATAACCGAAATACCCCT
1 TAGGGTAAAATGA-CGAAATACCCCA
*
42389636 TAGGGTAAAATGGCCGAAATATCCCCCA
1 TAGGGTAAAAT-GACGAAATA--CCCCA
42389664 TAGGGTAAAATGACCGAAATACCCCCA
1 TAGGGTAAAATGA-CGAAATA-CCCCA
*
42389691 TAGAGTAAAATGATCGAAATACCCCCA
1 TAGGGTAAAATGA-CGAAATA-CCCCA
42389718 TAGGGTAAAATGACTGAAATACTCCCA
1 TAGGGTAAAATGAC-GAAATAC-CCCA
* * *
42389745 CAAGGTAAAATGACTGAACTACTCCCA
1 TAGGGTAAAATGAC-GAAATAC-CCCA
* *
42389772 TAAGGT-AAATGATCGAAATACCCTTA
1 TAGGGTAAAATGA-CGAAATACCC-CA
*
42389798 TAGGATAAAATGACTGAAATATCCCCA
1 TAGGGTAAAATGAC-GAAATA-CCCCA
*
42389825 TAGGGTAAAATGACCAAAATACCCCTA
1 TAGGGTAAAATGA-CGAAATACCCC-A
* *
42389852 TAGGGTAAAATAATCAAAATACCTCCA
1 TAGGGTAAAATGA-CGAAATACC-CCA
*
42389879 TAGGGTAAAATGACTAAAATATCCCCA
1 TAGGGTAAAATGAC-GAAATA-CCCCA
* *
42389906 TAGGGTAAAATGACAGAAATTCCTTCA
1 TAGGGTAAAATGAC-GAAATACC-CCA
42389933 TAGGGTAAAATGAC
1 TAGGGTAAAATGAC
42389947 TGTTATACCC
Statistics
Matches: 402, Mismatches: 42, Indels: 54
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.00
26 74 0.18
27 291 0.72
28 35 0.09
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (25 bp):
TAGGGTAAAATGACGAAATACCCCA
Done.