Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 135 of 145
Found at i:44983044 original size:26 final size:26
Alignment explanation
Indices: 44982970--44983044 Score: 87
Period size: 26 Copynumber: 2.9 Consensus size: 26
44982960 AAGTATATTG
* * * *
44982970 TTACTGGTAACTTTGCTACAATACTA
1 TTACTGGCAGCTTTGCTGCGATACTA
*
44982996 TTACTGGCAGCTTTGTTGCGATACTA
1 TTACTGGCAGCTTTGCTGCGATACTA
* *
44983022 TTACTGGCAGTTTTGCTGTGATA
1 TTACTGGCAGCTTTGCTGCGATA
44983045 TTGGTGTGTT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.23, C:0.17, G:0.20, T:0.40
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCTGCGATACTA
Found at i:44985458 original size:16 final size:16
Alignment explanation
Indices: 44985437--44985471 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
44985427 GTCACTTGCC
44985437 TTTTTTAATATTTCAT
1 TTTTTTAATATTTCAT
44985453 TTTTTTAATATTTCAT
1 TTTTTTAATATTTCAT
44985469 TTT
1 TTT
44985472 CGGTATAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTTTTAATATTTCAT
Found at i:44986149 original size:3 final size:3
Alignment explanation
Indices: 44986141--44986242 Score: 195
Period size: 3 Copynumber: 34.0 Consensus size: 3
44986131 TAATATTATA
*
44986141 ATG ATG ATG ATT ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
44986189 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
44986237 ATG ATG
1 ATG ATG
44986243 GTACAGTACA
Statistics
Matches: 97, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 97 1.00
ACGTcount: A:0.33, C:0.00, G:0.32, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:44986989 original size:123 final size:122
Alignment explanation
Indices: 44986762--44987013 Score: 375
Period size: 123 Copynumber: 2.1 Consensus size: 122
44986752 CTGCTAGTCT
* * *
44986762 TTGA-TTCCCTTTTCGATCTGTTCTCTCTTGCATTGCCAAATTGCACTACGTTCTTTTGTCTGTT
1 TTGACTTCCCTTTTCGATCTGTTCTCTCTTGCATTGCCAAACTGCACTACATTCTTTCGTCTGTT
* *
44986826 GGGTGGAGACCAAGGGTTGGTTGGTGCGTCTTCAAGGAATTGAGGGTACGATTTTGG
66 GGGTGGAGACCAAGGGTTGGTTGGTGCGCCTTCAAGGAATTGAGGGTACGATTTCGG
**
44986883 TTGACTTCCTCTTTTCGAT-TCGTTCTCTCTTGTGTTGCCAAACTGCACTACATTCTTTCGT-TA
1 TTGACTTCC-CTTTTCGATCT-GTTCTCTCTTGCATTGCCAAACTGCACTACATTCTTTCGTCT-
* *
44986946 GTTGGGTGGAGACCAAGGGTTGGTTGGTGCGCCTTCAGGGAATTGAGGGTGCGATTTCGG
63 GTTGGGTGGAGACCAAGGGTTGGTTGGTGCGCCTTCAAGGAATTGAGGGTACGATTTCGG
44987006 TTGACTTC
1 TTGACTTC
44987014 GGTTTTTGAG
Statistics
Matches: 118, Mismatches: 9, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
121 4 0.03
122 6 0.05
123 108 0.92
ACGTcount: A:0.15, C:0.19, G:0.27, T:0.38
Consensus pattern (122 bp):
TTGACTTCCCTTTTCGATCTGTTCTCTCTTGCATTGCCAAACTGCACTACATTCTTTCGTCTGTT
GGGTGGAGACCAAGGGTTGGTTGGTGCGCCTTCAAGGAATTGAGGGTACGATTTCGG
Found at i:44992271 original size:169 final size:170
Alignment explanation
Indices: 44991982--44992320 Score: 671
Period size: 169 Copynumber: 2.0 Consensus size: 170
44991972 AGCCTATAAT
44991982 CTATTTTAAGGTGAATTTACAAAATTACCCCTAAAATTTTCACATTTATGCACACTAGTCTCTAA
1 CTATTTTAAGGTGAATTTACAAAATTACCCCTAAAATTTTCACATTTATGCACACTAGTCTCTAA
44992047 TCCAAGAACCTACAATTTTACCATTTTTAATTACTAAACATGATGACCGGATCTCCTAGGGCTTC
66 TCCAAGAACCTACAATTTTACCATTTTTAATTACTAAACATGATGACCGGATCTCCTAGGGCTTC
44992112 AAATCAGCCCAATTTTAACACCATTTCACATTAACACCCA
131 AAATCAGCCCAATTTTAACACCATTTCACATTAACACCCA
44992152 CTATTTTAA-GTGAATTTACAAAATTACCCCTAAAATTTTCACATTTATGCACACTAGTCTCTAA
1 CTATTTTAAGGTGAATTTACAAAATTACCCCTAAAATTTTCACATTTATGCACACTAGTCTCTAA
44992216 TCCAAGAACCTACAATTTTACCATTTTTAATTACTAAACATGATGACCGGATCTCCTAGGGCTTC
66 TCCAAGAACCTACAATTTTACCATTTTTAATTACTAAACATGATGACCGGATCTCCTAGGGCTTC
44992281 AAATCAGCCCAATTTTAACACCATTTCACATTAACACCCA
131 AAATCAGCCCAATTTTAACACCATTTCACATTAACACCCA
44992321 TGAATTTTTA
Statistics
Matches: 169, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
169 160 0.95
170 9 0.05
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.32
Consensus pattern (170 bp):
CTATTTTAAGGTGAATTTACAAAATTACCCCTAAAATTTTCACATTTATGCACACTAGTCTCTAA
TCCAAGAACCTACAATTTTACCATTTTTAATTACTAAACATGATGACCGGATCTCCTAGGGCTTC
AAATCAGCCCAATTTTAACACCATTTCACATTAACACCCA
Found at i:44994721 original size:107 final size:107
Alignment explanation
Indices: 44994561--44994757 Score: 304
Period size: 107 Copynumber: 1.8 Consensus size: 107
44994551 TTCCTTCATT
* * *
44994561 TTTTTTTTACTTAAGAATGTATTGGCCCTTTTGACGCAAAGTGGAATGGCAACCCAAGCACCCCA
1 TTTTTTTTACTTAAGAATGTATTGGCCCTTTTAACGCAAAGTGGAATGACAACCCAAACACCCCA
44994626 CCCCGGTTACTAAGCCCAACACACTCCTAATTTACTATTATA
66 CCCCGGTTACTAAGCCCAACACACTCCTAATTTACTATTATA
** * * *
44994668 TTTTTTTTGGTTAAGAATGTTTTGGCCCTTTTAACGCGAAGTGGGATGACAACCCAAACACCCCA
1 TTTTTTTTACTTAAGAATGTATTGGCCCTTTTAACGCAAAGTGGAATGACAACCCAAACACCCCA
* *
44994733 CCCCGGTTACTCAGCCTAACACACT
66 CCCCGGTTACTAAGCCCAACACACT
44994758 TAATTTTTTG
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
107 80 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (107 bp):
TTTTTTTTACTTAAGAATGTATTGGCCCTTTTAACGCAAAGTGGAATGACAACCCAAACACCCCA
CCCCGGTTACTAAGCCCAACACACTCCTAATTTACTATTATA
Found at i:44998645 original size:27 final size:26
Alignment explanation
Indices: 44998589--44998646 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
44998579 GGTATAACAG
* * **
44998589 TCATTTTACCCTATGGGGTATTTCGG
1 TCATTTTACCCTATGAGGTATTCCAA
44998615 TCATTTTACCCTATGAAGGTATTCCAA
1 TCATTTTACCCTATG-AGGTATTCCAA
44998642 TCATT
1 TCATT
44998647 CTAGCCATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.22, C:0.21, G:0.16, T:0.41
Consensus pattern (26 bp):
TCATTTTACCCTATGAGGTATTCCAA
Found at i:44999033 original size:27 final size:27
Alignment explanation
Indices: 44998686--44999032 Score: 403
Period size: 27 Copynumber: 12.9 Consensus size: 27
44998676 GGGTATAATA
*
44998686 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
44998713 ATCATTTTACCCTAAGAGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
44998740 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * * *
44998767 GCCATTCTACCCTATTGGAGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
44998794 TTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
44998821 ATTATTCTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
44998848 GTCA-TTTACCTTA-AGGGGTATTT-G
1 GTCATTTTACCCTATGGGGGTATTTCG
*
44998872 AGTCAATTTACCCTATGGGGGTATTTCG
1 -GTCATTTTACCCTATGGGGGTATTTCG
* *
44998900 ATCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
44998927 ATCATTCTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
44998954 GTTATTTTACACTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* ** *
44998981 GTCATTTTACCCTCTAAGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
44999008 GTCATTTTACCCTATGGGGGTATTT
1 GTCATTTTACCCTATGGGGGTATTT
44999033 TAGTTATTTT
Statistics
Matches: 268, Mismatches: 48, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
24 1 0.00
25 13 0.05
26 15 0.06
27 238 0.89
28 1 0.00
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.41
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:45006769 original size:35 final size:34
Alignment explanation
Indices: 45006722--45006787 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
45006712 AAAGTAGTCC
* * *
45006722 TGGGCCTAAGCCCTTTTTCAGTATCAGTAACAGTT
1 TGGGCCTAAGCCC-ATCTCAATATCAGTAACAGTT
*
45006757 TGGGCCTTAGCCCATCTCAATATCAGTAACA
1 TGGGCCTAAGCCCATCTCAATATCAGTAACA
45006788 AATAATTTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
34 15 0.56
35 12 0.44
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.30
Consensus pattern (34 bp):
TGGGCCTAAGCCCATCTCAATATCAGTAACAGTT
Found at i:45012030 original size:2 final size:2
Alignment explanation
Indices: 45012023--45012052 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
45012013 GCAAAGGTAA
45012023 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
45012053 AAGTATTTGG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:45015645 original size:21 final size:21
Alignment explanation
Indices: 45015606--45015646 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
45015596 TTAGACTACA
* *
45015606 AAAAATAAATATGCGTATATG
1 AAAAATAAATATACATATATG
*
45015627 AAAAATATATATACATATAT
1 AAAAATAAATATACATATAT
45015647 TTTTTTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.56, C:0.05, G:0.07, T:0.32
Consensus pattern (21 bp):
AAAAATAAATATACATATATG
Found at i:45016226 original size:23 final size:22
Alignment explanation
Indices: 45016183--45016238 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
45016173 AAAGGGTATC
* *
45016183 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
45016204 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
45016227 TACATATCATAT
1 TACAAATCATAT
45016239 TTAAGATTGC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.10
22 16 0.53
23 11 0.37
ACGTcount: A:0.45, C:0.16, G:0.04, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:45016245 original size:19 final size:19
Alignment explanation
Indices: 45016196--45016293 Score: 97
Period size: 19 Copynumber: 4.8 Consensus size: 19
45016186 AAATTAAATC
*
45016196 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
45016216 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
* *
45016238 TTTAAGATTGCATATATCATA
1 TCTAAGATT--ACATATCATA
**
45016259 TCTAAGATTGTATATCATA
1 TCTAAGATTACATATCATA
45016278 TCTAAGATTACATATC
1 TCTAAGATTACATATC
45016294 CTCGAAGATT
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
19 31 0.47
21 17 0.26
22 7 0.11
23 11 0.17
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.39
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:45016256 original size:21 final size:21
Alignment explanation
Indices: 45016230--45016292 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
45016220 CTAAGATTAC
*
45016230 ATATCATATTTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
45016251 ATATCATATCTAAGATTG--T
1 ATATCATATCTAAGATTGCAT
*
45016270 ATATCATATCTAAGATTACAT
1 ATATCATATCTAAGATTGCAT
45016291 AT
1 AT
45016293 CCTCGAAGAT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
19 18 0.47
21 20 0.53
ACGTcount: A:0.40, C:0.11, G:0.08, T:0.41
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:45017007 original size:24 final size:23
Alignment explanation
Indices: 45016963--45017007 Score: 54
Period size: 24 Copynumber: 1.9 Consensus size: 23
45016953 TTATTAAGAT
*
45016963 ATTTGTAATTGATATGCATCTTA
1 ATTTGTAATTGATATGAATCTTA
* *
45016986 ATTTTTAATTTGATCTGAATCT
1 ATTTGTAA-TTGATATGAATCT
45017008 AAAATATTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 7 0.39
24 11 0.61
ACGTcount: A:0.29, C:0.09, G:0.11, T:0.51
Consensus pattern (23 bp):
ATTTGTAATTGATATGAATCTTA
Found at i:45020017 original size:23 final size:23
Alignment explanation
Indices: 45019981--45020024 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
45019971 GACCTGAATT
*
45019981 TTAAAATCTGAAAAGTAAAAACA
1 TTAAAATCTGAAAAATAAAAACA
* *
45020004 TTAAATTCTTAAAAATAAAAA
1 TTAAAATCTGAAAAATAAAAA
45020025 TATGACTAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.61, C:0.07, G:0.05, T:0.27
Consensus pattern (23 bp):
TTAAAATCTGAAAAATAAAAACA
Found at i:45020263 original size:31 final size:31
Alignment explanation
Indices: 45020228--45020287 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 31
45020218 TTTATTTTGA
45020228 TCAATTTTAGT-TCTTATACTTTTTAAATTGG
1 TCAATTTTAGTCT-TTATACTTTTTAAATTGG
*
45020259 TCAATTTTAGTCTTTATACTTTTTTAATT
1 TCAATTTTAGTCTTTATACTTTTTAAATT
45020288 TTAAAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 26 0.96
32 1 0.04
ACGTcount: A:0.25, C:0.10, G:0.07, T:0.58
Consensus pattern (31 bp):
TCAATTTTAGTCTTTATACTTTTTAAATTGG
Found at i:45021121 original size:3 final size:3
Alignment explanation
Indices: 45021113--45021144 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
45021103 TGGTAAGTTT
45021113 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
45021145 TTAAAGGTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:45023848 original size:14 final size:14
Alignment explanation
Indices: 45023829--45023863 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
45023819 TTATAATATA
*
45023829 AAATTTTAAATTTT
1 AAATTTAAAATTTT
45023843 AAATTTAAAATTTT
1 AAATTTAAAATTTT
45023857 AAATTTA
1 AAATTTA
45023864 TATTTCACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (14 bp):
AAATTTAAAATTTT
Found at i:45023852 original size:21 final size:21
Alignment explanation
Indices: 45023795--45023862 Score: 73
Period size: 21 Copynumber: 3.0 Consensus size: 21
45023785 TAAATAAAAG
* *
45023795 TTAAATCTAAAATAATTTATAATA
1 TTAAATATAAAAT--TTTA-AATT
45023819 TTATAATATAAAATTTTAAATT
1 TTA-AATATAAAATTTTAAATT
*
45023841 TTAAATTTAAAATTTTAAATT
1 TTAAATATAAAATTTTAAATT
45023862 T
1 T
45023863 ATATTTCACA
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
21 18 0.45
22 6 0.15
23 4 0.10
24 3 0.08
25 9 0.22
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (21 bp):
TTAAATATAAAATTTTAAATT
Found at i:45030887 original size:27 final size:27
Alignment explanation
Indices: 45030849--45030923 Score: 116
Period size: 27 Copynumber: 2.8 Consensus size: 27
45030839 TAGTGGAGGG
45030849 TAACTGATTGGCGGCACCAAAGGTGCC
1 TAACTGATTGGCGGCACCAAAGGTGCC
* *
45030876 TAACTGATTGGCGGCACCGATGGTGCC
1 TAACTGATTGGCGGCACCAAAGGTGCC
45030903 -ATACTGATTGGCGGCACCAAA
1 TA-ACTGATTGGCGGCACCAAA
45030924 TCGTGTTATA
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 1 0.02
27 42 0.98
ACGTcount: A:0.25, C:0.25, G:0.29, T:0.20
Consensus pattern (27 bp):
TAACTGATTGGCGGCACCAAAGGTGCC
Found at i:45031385 original size:27 final size:27
Alignment explanation
Indices: 45031347--45031416 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
45031337 CACGATTCGA
45031347 TGCCGCCAATCAG-TATGGCACCATCGG
1 TGCCGCCAATCAGTTA-GGCACCATCGG
* *
45031374 TGCCGCCAATCAGTTAGGCACCTTTGG
1 TGCCGCCAATCAGTTAGGCACCATCGG
45031401 TGCCGCCAATCAGTTA
1 TGCCGCCAATCAGTTA
45031417 CCCTCCACTA
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 38 0.95
28 2 0.05
ACGTcount: A:0.21, C:0.31, G:0.24, T:0.23
Consensus pattern (27 bp):
TGCCGCCAATCAGTTAGGCACCATCGG
Found at i:45034398 original size:31 final size:31
Alignment explanation
Indices: 45034363--45034430 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
45034353 AAAAAACTTA
45034363 AGTGATTTAAATAAAAACTTTTGAATAATTC
1 AGTGATTTAAATAAAAACTTTTGAATAATTC
* * * *
45034394 AGTGAGTTAAATGAAAGCTTTTGAATAGTTC
1 AGTGATTTAAATAAAAACTTTTGAATAATTC
45034425 AGTGAT
1 AGTGAT
45034431 AATTTTGTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.40, C:0.06, G:0.18, T:0.37
Consensus pattern (31 bp):
AGTGATTTAAATAAAAACTTTTGAATAATTC
Found at i:45039836 original size:258 final size:261
Alignment explanation
Indices: 45039373--45039897 Score: 779
Period size: 258 Copynumber: 2.0 Consensus size: 261
45039363 AAAAATTAAG
* * * * *
45039373 GAATGGGAAGTACATTGTCAAAGTTTCAGGTGAAACTTATTCGTGCCCCTTTTGTCCTCAGAAGA
1 GAATGGGAAGCACATTGTCAAAGCTTCAGATGAAACTTATACGTGCCCCTATTGTCCT-AGAAGA
* * *
45039438 AAAAGCCAAATTACCGATACATGGATCTTGTCCAGCATGCTTCTGCTGTGGCAAATAGTAGTTCT
65 AAAA--CAAATTACCGATACATAGACCTCGTCCAGCATGCTTCTGCTGTGGCAAATAGTAGTTCT
* * *
45039503 GCAAGAAGAACACCAATAGTGAAAGCCAATCACTTGGCTTTGTCAAAGTATTTGGAAAAGGATCT
128 GCAAGAAGAACACCAATAATGAAAGCCAATCACCTGGCTTTGGCAAAGTATTTGGAAAAGGATCT
* *
45039568 TGCGCCTTTGGTTAGTTCATTGAAACCTG-TGACTCAGGAGGATCCTCTTAGTGGTTGTGACCAT
193 TGCGCCTTTGGTTAGTTCATTGAAACCTGCAG-CTCAAGAGGATCCTCTTAGTGGTTGTGACCAT
45039632 AATGA
257 AATGA
45039637 GAATGGGAAGCACATTGTCAAAGCTTCAGATGAAACTTATACGTGCCCCTATTGTCCT-G-AGAA
1 GAATGGGAAGCACATTGTCAAAGCTTCAGATGAAACTTATACGTGCCCCTATTGTCCTAGAAGAA
* * ** * *
45039700 GAA-AATTTACCGATATTTAGACCTCGTCCAGCATGCTTCTGGTGTGGGAAATAGTAGTTCTGCA
66 AAACAAATTACCGATACATAGACCTCGTCCAGCATGCTTCTGCTGTGGCAAATAGTAGTTCTGCA
* * *
45039764 AGAAGAACACCAATAATGAAAGCCAATCACCTGGCTTTGGCTAAGTATTTGGAAAAGGGTCTTGT
131 AGAAGAACACCAATAATGAAAGCCAATCACCTGGCTTTGGCAAAGTATTTGGAAAAGGATCTTGC
*
45039829 GCCTTTGGTTAGTTCATTGAAACCTGCAGCTCAAGAGGATCCTCTTAGTGGTTGTGACCATGATG
196 GCCTTTGGTTAGTTCATTGAAACCTGCAGCTCAAGAGGATCCTCTTAGTGGTTGTGACCATAATG
45039894 A
261 A
45039895 GAA
1 GAA
45039898 AATTGTTTGG
Statistics
Matches: 237, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
258 176 0.74
259 1 0.00
261 6 0.03
262 1 0.00
264 53 0.22
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (261 bp):
GAATGGGAAGCACATTGTCAAAGCTTCAGATGAAACTTATACGTGCCCCTATTGTCCTAGAAGAA
AAACAAATTACCGATACATAGACCTCGTCCAGCATGCTTCTGCTGTGGCAAATAGTAGTTCTGCA
AGAAGAACACCAATAATGAAAGCCAATCACCTGGCTTTGGCAAAGTATTTGGAAAAGGATCTTGC
GCCTTTGGTTAGTTCATTGAAACCTGCAGCTCAAGAGGATCCTCTTAGTGGTTGTGACCATAATG
A
Found at i:45044010 original size:20 final size:20
Alignment explanation
Indices: 45043969--45044010 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
45043959 ACCCAAATAT
*
45043969 TTGCATTTTTTAATATATAA
1 TTGCATTTTTTAATATAAAA
*
45043989 TTGC-TTTTTTTATATACAAA
1 TTGCATTTTTTAATATA-AAA
45044009 TT
1 TT
45044011 CTATTATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.31, C:0.07, G:0.05, T:0.57
Consensus pattern (20 bp):
TTGCATTTTTTAATATAAAA
Found at i:45044583 original size:104 final size:105
Alignment explanation
Indices: 45044455--45044664 Score: 404
Period size: 104 Copynumber: 2.0 Consensus size: 105
45044445 TTTACTTTAA
45044455 AAAAATTAGTCCAAACCTACTTAAACCAATTTATATTTTTTTTCTATTTTTTAAAATATTATTTT
1 AAAAATTAGTCCAAACCTACTTAAACCAATTTATATTTTTTTTCTATTTTTTAAAATATTATTTT
45044520 ATTTAATATTTACTAATTATATATATTACTATCCTTATAT
66 ATTTAATATTTACTAATTATATATATTACTATCCTTATAT
45044560 AAAAATTAGT-CAAACCTACTTAAACCAATTTATATTTTTTTTCTATTTTTTAAAATATTATTTT
1 AAAAATTAGTCCAAACCTACTTAAACCAATTTATATTTTTTTTCTATTTTTTAAAATATTATTTT
*
45044624 ATTTAATATTTACTAATTATATATATTTCTATCCTTATAT
66 ATTTAATATTTACTAATTATATATATTACTATCCTTATAT
45044664 A
1 A
45044665 TTTTATTAAA
Statistics
Matches: 104, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
104 94 0.90
105 10 0.10
ACGTcount: A:0.37, C:0.11, G:0.01, T:0.51
Consensus pattern (105 bp):
AAAAATTAGTCCAAACCTACTTAAACCAATTTATATTTTTTTTCTATTTTTTAAAATATTATTTT
ATTTAATATTTACTAATTATATATATTACTATCCTTATAT
Found at i:45058516 original size:18 final size:18
Alignment explanation
Indices: 45058477--45058544 Score: 52
Period size: 18 Copynumber: 3.7 Consensus size: 18
45058467 TAACTTGTGA
* *
45058477 ATTTAAAATAAAATATTA-
1 ATTTATAATAATAT-TTAT
45058495 ATTTATAATAATATTTAT
1 ATTTATAATAATATTTAT
45058513 ATTTTATAATTAA-ATTTAAAT
1 A-TTTATAA-TAATATTT--AT
45058534 ATTTA-AATAAT
1 ATTTATAATAAT
45058545 TTTTTAATTA
Statistics
Matches: 42, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
17 3 0.07
18 16 0.38
19 13 0.31
20 7 0.17
21 3 0.07
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTTATAATAATATTTAT
Found at i:45058520 original size:19 final size:20
Alignment explanation
Indices: 45058495--45058544 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
45058485 TAAAATATTA
*
45058495 ATTTATAATAATATTTATAT
1 ATTTATAATAATATTTAAAT
45058515 -TTTATAATTAA-ATTTAAAT
1 ATTTATAA-TAATATTTAAAT
45058534 ATTTA-AATAAT
1 ATTTATAATAAT
45058545 TTTTTAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
18 3 0.12
19 16 0.62
20 7 0.27
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
ATTTATAATAATATTTAAAT
Found at i:45059559 original size:27 final size:27
Alignment explanation
Indices: 45059521--45059603 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 27
45059511 AATACAAGTT
45059521 GACTAGTTGAGCCTATCTCAGAGGCGC
1 GACTAGTTGAGCCTATCTCAGAGGCGC
* * *
45059548 GACTAGTTGAGCCTATCTGACAGGCAC
1 GACTAGTTGAGCCTATCTCAGAGGCGC
* * *
45059575 GAGTAGTTGTGCCTAACTCAGAGGCGC
1 GACTAGTTGAGCCTATCTCAGAGGCGC
45059602 GA
1 GA
45059604 ATGGTGGGGT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.24, C:0.24, G:0.30, T:0.22
Consensus pattern (27 bp):
GACTAGTTGAGCCTATCTCAGAGGCGC
Found at i:45059963 original size:33 final size:33
Alignment explanation
Indices: 45059897--45060009 Score: 156
Period size: 33 Copynumber: 3.5 Consensus size: 33
45059887 CGGGAGGAAC
* * *
45059897 GGAGTACGGCGGTGGATACG-GCCGGAAGGAGT
1 GGAGTACTGAGGTGGATACGAGCCAGAAGGAGT
45059929 GGAGTACTGAGGTGGATACGAGCCAGAAGGAGT
1 GGAGTACTGAGGTGGATACGAGCCAGAAGGAGT
* * * *
45059962 GGAGTACTGAGGTGGATACGAGCTAGGATGACT
1 GGAGTACTGAGGTGGATACGAGCCAGAAGGAGT
45059995 GGAGTACTGAGGTGG
1 GGAGTACTGAGGTGG
45060010 TAGTGGGCTG
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
32 18 0.25
33 55 0.75
ACGTcount: A:0.26, C:0.12, G:0.45, T:0.17
Consensus pattern (33 bp):
GGAGTACTGAGGTGGATACGAGCCAGAAGGAGT
Found at i:45061291 original size:23 final size:23
Alignment explanation
Indices: 45061261--45061309 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
45061251 GCAAAAGGTA
45061261 GCCGACCTAGAGATTGAGCTTAC
1 GCCGACCTAGAGATTGAGCTTAC
*
45061284 GCCGACCTAGAGGTTGAGCTTAC
1 GCCGACCTAGAGATTGAGCTTAC
45061307 GCC
1 GCC
45061310 TGTGACCGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (23 bp):
GCCGACCTAGAGATTGAGCTTAC
Found at i:45062120 original size:21 final size:22
Alignment explanation
Indices: 45062096--45062137 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
45062086 TTTAATCAAC
*
45062096 ATTTT-AATAAATCAATAAAAA
1 ATTTTAAATAAATAAATAAAAA
45062117 ATTTTAAATAAATAAATAAAA
1 ATTTTAAATAAATAAATAAAA
45062138 TCAAATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.33
Consensus pattern (22 bp):
ATTTTAAATAAATAAATAAAAA
Found at i:45062447 original size:3 final size:3
Alignment explanation
Indices: 45062432--45062464 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
45062422 TTTTCTTTCT
*
45062432 TTC TTC TTT TTC TTC TTC TTC TTC -TC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
45062465 CCTTTCTCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:45062607 original size:20 final size:20
Alignment explanation
Indices: 45062548--45062610 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
45062538 AACTTTTTCC
* * *
45062548 CATTGAAGGGACAGCAGCAA
1 CATTGAAGGGACAACAACAG
45062568 CATTGAAGGGACAACAACAG
1 CATTGAAGGGACAACAACAG
*
45062588 CATTGAAAGGACAACAACAG
1 CATTGAAGGGACAACAACAG
45062608 CAT
1 CAT
45062611 GGTGCAGCAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.44, C:0.21, G:0.24, T:0.11
Consensus pattern (20 bp):
CATTGAAGGGACAACAACAG
Found at i:45063022 original size:14 final size:15
Alignment explanation
Indices: 45063005--45063033 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
45062995 CAACATCTAT
45063005 TTTTAAATT-TTTCA
1 TTTTAAATTATTTCA
45063019 TTTTAAATTATTTCA
1 TTTTAAATTATTTCA
45063034 CGTAAGATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (15 bp):
TTTTAAATTATTTCA
Found at i:45064616 original size:15 final size:15
Alignment explanation
Indices: 45064593--45064623 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
45064583 CTAATATTTA
*
45064593 AAACTTATTAAAAAT
1 AAACATATTAAAAAT
45064608 AAACATATTAAAAAT
1 AAACATATTAAAAAT
45064623 A
1 A
45064624 CTAAGCTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACATATTAAAAAT
Found at i:45082858 original size:19 final size:21
Alignment explanation
Indices: 45082836--45082879 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 21
45082826 TAATTTTAAT
45082836 TTTTA-TATGTAAATATT-TG
1 TTTTATTATGTAAATATTCTG
* *
45082855 TTTTATTTTGTAATTATTCTG
1 TTTTATTATGTAAATATTCTG
45082876 TTTT
1 TTTT
45082880 TAATATTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.24
20 10 0.48
21 6 0.29
ACGTcount: A:0.23, C:0.02, G:0.09, T:0.66
Consensus pattern (21 bp):
TTTTATTATGTAAATATTCTG
Found at i:45083078 original size:87 final size:86
Alignment explanation
Indices: 45082982--45083310 Score: 231
Period size: 90 Copynumber: 3.7 Consensus size: 86
45082972 AGTACACGAC
*
45082982 AAATTAAATTTACAGACACAATAAAATACAAACATCCTACAATATTAATACA-AAAAATATAAAA
1 AAATTAAATTTACAAACACAA-AAAATACAAACATCCTA-AA-ATTAATACACAAAAATATAAAA
*
45083046 TTCAAAC-AAAAATAATACGTACT
63 TTCAAACTAAAAATAATACGAACT
* * * * ** * * *
45083069 AAATTAAATTTAAAAAC-CCAACACTACAAACGGATGGTAAAATTAATACACACAAATTTTAAAT
1 AAATTAAATTTACAAACACAAAAAATACAAAC--ATCCTAAAATTAATACACAAAAATATAAAAT
* * *
45083133 TCAAACTACATATAATACGAATT
64 TCAAACTAAAAATAATACGAACT
* * *
45083156 AAATTAAATTTACAAATACAAAAAAATACAAACAT-TTAAAGAAATTAATACACGAAAATATAAA
1 AAATTAAATTTACAAACAC-AAAAAATACAAACATCCT--A-AAATTAATACACAAAAATATAAA
* * **
45083220 AATGAAACCTTAAATCCTAA-AC-AACT
62 ATTCAAA-C-TAAA-AATAATACGAACT
* * * * *
45083246 ACATTAAATTTATAGATATA-AAAAAATACAAACATTCTAAGAAATTAATACACGAAAATATAAA
1 AAATTAAATTTACA-A-ACACAAAAAATACAAACATCCT-A-AAATTAATACACAAAAATATAAA
45083310 A
62 A
45083311 ATGAAACCTT
Statistics
Matches: 194, Mismatches: 33, Indels: 27
0.76 0.13 0.11
Matches are distributed among these distances:
85 18 0.09
86 21 0.11
87 48 0.25
88 2 0.01
89 34 0.18
90 58 0.30
91 7 0.04
92 6 0.03
ACGTcount: A:0.57, C:0.14, G:0.04, T:0.25
Consensus pattern (86 bp):
AAATTAAATTTACAAACACAAAAAATACAAACATCCTAAAATTAATACACAAAAATATAAAATTC
AAACTAAAAATAATACGAACT
Found at i:45083265 original size:48 final size:48
Alignment explanation
Indices: 45083213--45083359 Score: 132
Period size: 48 Copynumber: 3.2 Consensus size: 48
45083203 ATACACGAAA
*
45083213 ATATAAAAATGAAACCTTAAATCCTAAACAACTACATTAAATTTATAG
1 ATATAAAAATGAAACCTTAAATTCTAAACAACTACATTAAATTTATAG
* * * ** *
45083261 ATATAAAAA--AATA-C-AAACATTCTAAGA-AATTA-A-TACA-CGA-AA
1 ATATAAAAATGAA-ACCTTAA-ATTCTAA-ACAACTACATTAAATTTATAG
*
45083303 ATATAAAAATGAAACCTTAGATTCTAAACAACTACATTAAATTTATAG
1 ATATAAAAATGAAACCTTAAATTCTAAACAACTACATTAAATTTATAG
45083351 ATATAAAAA
1 ATATAAAAA
45083360 AATACAAACA
Statistics
Matches: 73, Mismatches: 14, Indels: 24
0.66 0.13 0.22
Matches are distributed among these distances:
42 10 0.14
43 3 0.04
44 17 0.23
45 5 0.07
46 16 0.22
47 3 0.04
48 19 0.26
ACGTcount: A:0.56, C:0.12, G:0.05, T:0.27
Consensus pattern (48 bp):
ATATAAAAATGAAACCTTAAATTCTAAACAACTACATTAAATTTATAG
Found at i:45083277 original size:90 final size:91
Alignment explanation
Indices: 45083158--45083386 Score: 392
Period size: 90 Copynumber: 2.5 Consensus size: 91
45083148 TACGAATTAA
* * *
45083158 ATTAAATTTACAAATACAAAAAAATACAAACATT-TAAAGAAATTAATACACGAAAATATAAAAA
1 ATTAAATTTATAGATATAAAAAAATACAAACATTCTAAAGAAATTAATACACGAAAATATAAAAA
45083222 TGAAACCTTAAATCCTAAACAACTAC
66 TGAAACCTTAAATCCTAAACAACTAC
45083248 ATTAAATTTATAGATATAAAAAAATACAAACATTCT-AAGAAATTAATACACGAAAATATAAAAA
1 ATTAAATTTATAGATATAAAAAAATACAAACATTCTAAAGAAATTAATACACGAAAATATAAAAA
* *
45083312 TGAAACCTTAGATTCTAAACAACTAC
66 TGAAACCTTAAATCCTAAACAACTAC
45083338 ATTAAATTTATAGATATAAAAAAATACAAACATTCTAAAGAAA-TAATAC
1 ATTAAATTTATAGATATAAAAAAATACAAACATTCTAAAGAAATTAATAC
45083387 TATTATTTTG
Statistics
Matches: 132, Mismatches: 5, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
90 125 0.95
91 7 0.05
ACGTcount: A:0.58, C:0.12, G:0.04, T:0.26
Consensus pattern (91 bp):
ATTAAATTTATAGATATAAAAAAATACAAACATTCTAAAGAAATTAATACACGAAAATATAAAAA
TGAAACCTTAAATCCTAAACAACTAC
Found at i:45084133 original size:45 final size:44
Alignment explanation
Indices: 45084069--45084163 Score: 156
Period size: 45 Copynumber: 2.1 Consensus size: 44
45084059 CTGTCGTTAT
45084069 TTATTTGTCTTTATTTACTTAAATTTAAATTTATTTC-AGATTAAA
1 TTATTTGTCTTTATTTACTTAAATTTAAATTTA--TCGAGATTAAA
*
45084114 TTATTTGTCTTTATTTACTTACATTTAAATTTATCGAGATTAAA
1 TTATTTGTCTTTATTTACTTAAATTTAAATTTATCGAGATTAAA
45084158 TTATTT
1 TTATTT
45084164 TAATTTTCTT
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
43 2 0.04
44 14 0.29
45 32 0.67
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (44 bp):
TTATTTGTCTTTATTTACTTAAATTTAAATTTATCGAGATTAAA
Found at i:45084495 original size:27 final size:27
Alignment explanation
Indices: 45084454--45084505 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
45084444 ATACGGGGGT
* *
45084454 GTGGTGCTTATCTGATACGCGGCACTG
1 GTGGTGCCTACCTGATACGCGGCACTG
*
45084481 GTGGTGCCTACCTGATAGGCGGCAC
1 GTGGTGCCTACCTGATACGCGGCAC
45084506 ACCTAGCATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.15, C:0.25, G:0.35, T:0.25
Consensus pattern (27 bp):
GTGGTGCCTACCTGATACGCGGCACTG
Found at i:45085255 original size:27 final size:27
Alignment explanation
Indices: 45085176--45085256 Score: 72
Period size: 27 Copynumber: 3.0 Consensus size: 27
45085166 AATACTAAGT
* *
45085176 GTACAGCCTATCAGATAGGCACCACAA
1 GTACCGCCTATCAGATAGGCACCACTA
* * *** *
45085203 GTGCCGCCTATTAGATAGGGGTCACTG
1 GTACCGCCTATCAGATAGGCACCACTA
**
45085230 GTATTGCCTATCAGATAGGCACCACTA
1 GTACCGCCTATCAGATAGGCACCACTA
45085257 CTAAAATATT
Statistics
Matches: 38, Mismatches: 16, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.22
Consensus pattern (27 bp):
GTACCGCCTATCAGATAGGCACCACTA
Found at i:45086122 original size:31 final size:31
Alignment explanation
Indices: 45086082--45086163 Score: 119
Period size: 31 Copynumber: 2.6 Consensus size: 31
45086072 AAAACTCAAC
*
45086082 AACTCAATGACTCCAATAAAAACTTTAAAAT
1 AACTCAATGACTCAAATAAAAACTTTAAAAT
*
45086113 AACTTAATGACTCAAATAAAAACTTTAAAAT
1 AACTCAATGACTCAAATAAAAACTTTAAAAT
* * *
45086144 AATTCACTGACTTAAATAAA
1 AACTCAATGACTCAAATAAA
45086164 TTTTTTTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.52, C:0.16, G:0.04, T:0.28
Consensus pattern (31 bp):
AACTCAATGACTCAAATAAAAACTTTAAAAT
Found at i:45086461 original size:26 final size:27
Alignment explanation
Indices: 45086425--45086479 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
45086415 CCGTCTTTCA
*
45086425 TCTGCCGTCAAACTCT-TTA-CATAATT
1 TCTGCCCTCAAACTCTCTTACCAT-ATT
45086451 TCTGCCCTCAAACTCTCTTACCATATT
1 TCTGCCCTCAAACTCTCTTACCATATT
45086478 TC
1 TC
45086480 AGATATTCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
26 15 0.58
27 8 0.31
28 3 0.12
ACGTcount: A:0.24, C:0.33, G:0.05, T:0.38
Consensus pattern (27 bp):
TCTGCCCTCAAACTCTCTTACCATATT
Found at i:45088531 original size:75 final size:77
Alignment explanation
Indices: 45088394--45088534 Score: 223
Period size: 77 Copynumber: 1.9 Consensus size: 77
45088384 AGTACAATTT
*
45088394 ATTTTTTTCGTATACTGATATCTGATTCTGACACAAAAAAAAAAGAAATTTTTTTAATTTGTACT
1 ATTTTTTTCGTATACTGATATCTGATTCTGACACAAAAAAAAAAGAAATTTTTTTAAATTGTACT
45088459 GCCGGCACCCAA
66 GCCGGCACCCAA
* ** *
45088471 ATTTTTTTTGTATACTGATATCTGATTCTGAC-C-CCAAAAAAAGAATTTTTTTTAAATTGTACT
1 ATTTTTTTCGTATACTGATATCTGATTCTGACACAAAAAAAAAAGAAATTTTTTTAAATTGTACT
45088534 G
66 G
45088535 GGTGCCGGCA
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
75 27 0.46
76 1 0.02
77 31 0.53
ACGTcount: A:0.33, C:0.15, G:0.11, T:0.40
Consensus pattern (77 bp):
ATTTTTTTCGTATACTGATATCTGATTCTGACACAAAAAAAAAAGAAATTTTTTTAAATTGTACT
GCCGGCACCCAA
Found at i:45088760 original size:217 final size:209
Alignment explanation
Indices: 45088471--45088994 Score: 655
Period size: 217 Copynumber: 2.5 Consensus size: 209
45088461 CGGCACCCAA
* * ***
45088471 ATTTTTTTTGTATACTGATATCTGATTCT--GACCCCAAAAAAAGAATTTTTTTTAAATTGTACT
1 ATTTTTTTCGTATACTGATATCTGACTCTGAGACAAAAAAAAAAGAATTTTTTTTAAATTGTACT
* *
45088534 GGGTGCCGGCAATTGACAGGCCAGCACCCAAA-TTTTTT-TATTTTTTTCGTATACTGATATTTG
66 GGGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTCTATTTTTTTCGTATACTGATATCTG
* * *
45088597 ATTCTAACA-TAAAAAAAAGAATTTTTTTTAAAAAAATTGTATTGGGTGCCGGCCATTGAA-AGG
131 ACTCTAACACAAAAAAAAAGAATTTTTTTT----AAATTGTACTGGGTGCCGGCCATT-AACAGG
45088660 CCAACACCCAAAAAATTTTTATTTTT
191 CCAACACCC----AA--TTT-TTTTT
45088686 ATTTTTTTCGTATACTGATATCTGACTCTGAGACAAAAAAAAAAGAATTTTTTTTAAATTGTACT
1 ATTTTTTTCGTATACTGATATCTGACTCTGAGACAAAAAAAAAAGAATTTTTTTTAAATTGTACT
* * *
45088751 GGGTGCCGGCCATTGACAGACCAACATCCAAATTTTTTTTTCTATTTTTTTCGTATACTGATATC
66 GGGTGCCGGCCATTGACAGGCCAGCACCCAAA--TTTTTTTCTATTTTTTTCGTATACTGATATC
*
45088816 TGACTCTAACACAAAAAAAAAGAATTTTTTTTAAATTGTACTGGGTGTCGGCCATTAACAGGCCA
129 TGACTCTAACACAAAAAAAAAGAATTTTTTTTAAATTGTACTGGGTGCCGGCCATTAACAGGCCA
45088881 ACACCCAATTTTTTTT
194 ACACCCAATTTTTTTT
* * **** *
45088897 ATTTTTTTCGTATACTGATATCTGACTCTGACACAAAAAAAAGAAAAAAAAATTTAAAATTGTAC
1 ATTTTTTTCGTATACTGATATCTGACTCTGAGACAAAAAAAA-AAGAATTTTTTTTAAATTGTAC
* * *
45088962 TAGGTGCCGGCCATGGACTGGCCAGCACCCAAA
65 TGGGTGCCGGCCATTGACAGGCCAGCACCCAAA
45088995 AAATAATTTT
Statistics
Matches: 273, Mismatches: 27, Indels: 21
0.85 0.08 0.07
Matches are distributed among these distances:
211 46 0.17
212 46 0.17
214 2 0.01
215 27 0.10
217 61 0.22
218 34 0.12
220 6 0.02
221 32 0.12
222 19 0.07
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (209 bp):
ATTTTTTTCGTATACTGATATCTGACTCTGAGACAAAAAAAAAAGAATTTTTTTTAAATTGTACT
GGGTGCCGGCCATTGACAGGCCAGCACCCAAATTTTTTTCTATTTTTTTCGTATACTGATATCTG
ACTCTAACACAAAAAAAAAGAATTTTTTTTAAATTGTACTGGGTGCCGGCCATTAACAGGCCAAC
ACCCAATTTTTTTT
Found at i:45089012 original size:105 final size:105
Alignment explanation
Indices: 45088471--45088994 Score: 630
Period size: 107 Copynumber: 4.9 Consensus size: 105
45088461 CGGCACCCAA
* * **
45088471 ATTTTTTTTGTATACTGATATCTGATTCTGAC-C-CCAAAAAAAGAATTTTTTTTAAATTGTACT
1 ATTTTTTTCGTATACTGATATCTGACTCTGACACAAAAAAAAAAGAATTTTTTTTAAATTGTACT
* *
45088534 GGGTGCCGGCAATTGACAGGCCAGCACCCAAA-TTTTTTT
66 GGGTGCCGGCCATTGACAGGCCAACACCCAAATTTTTTTT
* * *
45088573 ATTTTTTTCGTATACTGATATTTGATTCT-A-ACATAAAAAAAAGAATTTTTTTTAAAAAAATTG
1 ATTTTTTTCGTATACTGATATCTGACTCTGACACAAAAAAAAAAGAATTTTTTTT----AAATTG
* *
45088636 TATTGGGTGCCGGCCATTGAAAGGCCAACACCCAAAAAATTTTTATTTTT
62 TACTGGGTGCCGGCCATTGACAGGCCAACACCC---AAA--TTT-TTTTT
*
45088686 ATTTTTTTCGTATACTGATATCTGACTCTGAGACAAAAAAAAAAGAATTTTTTTTAAATTGTACT
1 ATTTTTTTCGTATACTGATATCTGACTCTGACACAAAAAAAAAAGAATTTTTTTTAAATTGTACT
* *
45088751 GGGTGCCGGCCATTGACAGACCAACATCCAAATTTTTTTTTCT
66 GGGTGCCGGCCATTGACAGGCCAACACCCAAA--TTTTTTT-T
*
45088794 ATTTTTTTCGTATACTGATATCTGACTCTAACAC-AAAAAAAAAGAATTTTTTTTAAATTGTACT
1 ATTTTTTTCGTATACTGATATCTGACTCTGACACAAAAAAAAAAGAATTTTTTTTAAATTGTACT
* *
45088858 GGGTGTCGGCCATTAACAGGCCAACACCC-AATTTTTTTT
66 GGGTGCCGGCCATTGACAGGCCAACACCCAAATTTTTTTT
* **** *
45088897 ATTTTTTTCGTATACTGATATCTGACTCTGACACAAAAAAAAGAAAAAAAAATTTAAAATTGTAC
1 ATTTTTTTCGTATACTGATATCTGACTCTGACACAAAAAAAA-AAGAATTTTTTTTAAATTGTAC
* * * *
45088962 TAGGTGCCGGCCATGGACTGGCCAGCACCCAAA
65 TGGGTGCCGGCCATTGACAGGCCAACACCCAAA
45088995 AAATAATTTT
Statistics
Matches: 369, Mismatches: 34, Indels: 34
0.84 0.08 0.08
Matches are distributed among these distances:
101 2 0.01
102 45 0.12
103 34 0.09
104 14 0.04
105 40 0.11
106 39 0.11
107 59 0.16
108 41 0.11
109 3 0.01
111 35 0.09
112 2 0.01
113 32 0.09
114 1 0.00
115 22 0.06
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (105 bp):
ATTTTTTTCGTATACTGATATCTGACTCTGACACAAAAAAAAAAGAATTTTTTTTAAATTGTACT
GGGTGCCGGCCATTGACAGGCCAACACCCAAATTTTTTTT
Found at i:45089550 original size:16 final size:16
Alignment explanation
Indices: 45089504--45089556 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
45089494 TTGAATTACT
*
45089504 AATTACAGCTCTATTC
1 AATTACAGCCCTATTC
* * * *
45089520 CATTAGAACCTTATTC
1 AATTACAGCCCTATTC
45089536 AATTACAGCCCTATTC
1 AATTACAGCCCTATTC
*
45089552 TATTA
1 AATTA
45089557 TAGTAGACCA
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.38
Consensus pattern (16 bp):
AATTACAGCCCTATTC
Found at i:45099469 original size:44 final size:44
Alignment explanation
Indices: 45099417--45099673 Score: 347
Period size: 44 Copynumber: 5.8 Consensus size: 44
45099407 TGAAGTTATA
** * * *
45099417 AATCCTATCTCTTTAGACAGTAGTGAAATAGGTTGAAGATTGTG
1 AATCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTG
*
45099461 AATCCTATCTCCCTGGACAGCAGTGGAATAGGTTAAAGATTGTG
1 AATCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTG
* *
45099505 AATCCTATCTCCTTGGACAGCAATGGAATAGGTCT-AAGATTGTG
1 AATCCTATCTCCCTGGACAGCAGTGGAATAGGT-TGAAGATTGTG
* *
45099549 AATCCTATCTCCATGGACAGCAGTGGAATAGGTTGAAAATTGTG
1 AATCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTG
* ** *
45099593 AGTCCTATCTCCCTGGACAGCAGTGGAATAGACTGAAGATTATG
1 AATCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTG
*
45099637 AATCCTATCTCCCT-GAGCAGCAGTGGAGTAGGTTGAA
1 AATCCTATCTCCCTGGA-CAGCAGTGGAATAGGTTGAA
45099674 AATTACATAT
Statistics
Matches: 189, Mismatches: 21, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
43 3 0.02
44 185 0.98
45 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (44 bp):
AATCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTG
Found at i:45099690 original size:44 final size:43
Alignment explanation
Indices: 45099549--45099938 Score: 169
Period size: 44 Copynumber: 8.9 Consensus size: 43
45099539 TAAGATTGTG
* * * **
45099549 AATCCTATCTCCATG-GACAGCAGTGGAATAGGTTGAAAATTGTG
1 AATCTTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATT-AC
* * * ** * *
45099593 AGTCCTATCTCCCTG-GACAGCAGTGGAATAGACTGAAGATTATG
1 AATCTTATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTA-C
*
45099637 AATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTAC
1 AATCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTAC
** * * * * **
45099680 ATATCTTATCTCCCAAAGCAGTAGTGGAGCAGATTG-AAGTCCC
1 A-ATCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTAC
* * * *
45099723 CAGCTTTGTCTCCTTGAGCAGCAGTGGAGTAGGTTGAAAA-TAGC
1 AATC-TTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTA-C
* * *** * * * * * ***
45099767 AGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGACCCC
1 A-ATCTTATCTCCCTG-AGCAGCAGTGGAGTAGGTTGAAAATTAC
* * *
45099812 AACCTTGTCTCCCTGAGCTGCAGTGGAGTAGGTTGAAAATTAC
1 AATCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTAC
* * * * * * * **
45099855 AGATCTTATCTCCCTAAGTAGTACTGGAGCAGGTCG-AAGTCCCC
1 A-ATCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAAT-TAC
** *
45099899 AGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAAT
1 AATCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAAT
45099939 AACAGACCTT
Statistics
Matches: 252, Mismatches: 82, Indels: 24
0.70 0.23 0.07
Matches are distributed among these distances:
42 2 0.01
43 75 0.30
44 154 0.61
45 21 0.08
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.26
Consensus pattern (43 bp):
AATCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTAC
Found at i:45099706 original size:132 final size:132
Alignment explanation
Indices: 45099417--45099707 Score: 338
Period size: 132 Copynumber: 2.2 Consensus size: 132
45099407 TGAAGTTATA
*** * *
45099417 AATCCTATCTCTTTAGACAGTAGTGAAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGACAGC
1 AATCCTATCTCCAAAGACAGTAGTGGAATAGGTTGAAAATTGTGAATCCTATCTCCCTGGACAGC
** * * *
45099482 AGTGGAATAGGTTAAAGATTGTGAATCCTATCTCCTTGGACAGCAATGGAATAGGTCTAAGATTG
66 AGTGGAATAGACTAAAGATTATGAATCCTATCTCCCTGGACAGCAATGGAATAGGTCTAAAATTG
**
45099547 TG
131 AC
** * *
45099549 AATCCTATCTCCATGGACAGCAGTGGAATAGGTTGAAAATTGTGAGTCCTATCTCCCTGGACAGC
1 AATCCTATCTCCAAAGACAGTAGTGGAATAGGTTGAAAATTGTGAATCCTATCTCCCTGGACAGC
* * *
45099614 AGTGGAATAGACTGAAGATTATGAATCCTATCTCCCT-GAGCAGCAGTGGAGTAGGT-TGAAAAT
66 AGTGGAATAGACTAAAGATTATGAATCCTATCTCCCTGGA-CAGCAATGGAATAGGTCT-AAAAT
45099677 T-AC
129 TGAC
*
45099680 ATATCTTATCTCCCAAAG-CAGTAGTGGA
1 A-ATCCTATCT-CCAAAGACAGTAGTGGA
45099708 GCAGATTGAA
Statistics
Matches: 134, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
131 4 0.03
132 126 0.94
133 4 0.03
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (132 bp):
AATCCTATCTCCAAAGACAGTAGTGGAATAGGTTGAAAATTGTGAATCCTATCTCCCTGGACAGC
AGTGGAATAGACTAAAGATTATGAATCCTATCTCCCTGGACAGCAATGGAATAGGTCTAAAATTG
AC
Found at i:45099763 original size:87 final size:87
Alignment explanation
Indices: 45099644--45099944 Score: 379
Period size: 87 Copynumber: 3.4 Consensus size: 87
45099634 ATGAATCCTA
* *
45099644 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACATATCTTATCTCCCAAAGCAGTAGTGGAG
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGTAGTAGTGGAG
* *
45099709 CAGATTGAAGTCCCCAGCTTTG
66 CAGATCGAAGTCCCCAGCCTTG
* * *** * * * * *
45099731 TCTCCTTGAGCAGCAGTGGAGTAGGTTGAAAA-TAGCAGATCTTGTCTTCCTGTATTGGCAGCGA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTA-CAGATCTTATC-TCCCAAAGTAGTAGTGG
* * *
45099795 AGTAGATCGAAGACCCCAACCTTG
64 AGCAGATCGAAGTCCCCAGCCTTG
* * *
45099819 TCTCCCTGAGCTGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGTAGTACTGGAG
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGTAGTAGTGGAG
*
45099884 CAGGTCGAAGTCCCCAGCCTTG
66 CAGATCGAAGTCCCCAGCCTTG
*
45099906 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGA
45099945 CCTTGCATTC
Statistics
Matches: 176, Mismatches: 35, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
86 2 0.01
87 105 0.60
88 67 0.38
89 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (87 bp):
TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGTAGTAGTGGAG
CAGATCGAAGTCCCCAGCCTTG
Found at i:45099827 original size:175 final size:175
Alignment explanation
Indices: 45099644--45099982 Score: 527
Period size: 175 Copynumber: 1.9 Consensus size: 175
45099634 ATGAATCCTA
* *
45099644 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACATATCTTATCTCCCAAAGCAGTAGTGGAG
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTACTGGAG
* * * * *
45099709 CAGATTGAAGTCCCCAGCTTTGTCTCCTTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTT
66 CAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGACCTT
* * *
45099774 GTC-TTCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAACCTTG
131 G-CATTCCTGTACTGACAGCGAAGCAGATCGAAGACCCCAACCTTG
* * *
45099819 TCTCCCTGAGCTGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGTAGTACTGGAG
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTACTGGAG
*
45099884 CAGGTCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGACCTT
66 CAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGACCTT
*
45099949 GCATTCCTGTACTGACGGCGAAGCAGATCGAAGA
131 GCATTCCTGTACTGACAGCGAAGCAGATCGAAGA
45099983 TACCAGTCCT
Statistics
Matches: 148, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
174 1 0.01
175 147 0.99
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (175 bp):
TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTACTGGAG
CAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGACCTT
GCATTCCTGTACTGACAGCGAAGCAGATCGAAGACCCCAACCTTG
Found at i:45099844 original size:88 final size:87
Alignment explanation
Indices: 45099644--45099982 Score: 330
Period size: 87 Copynumber: 3.9 Consensus size: 87
45099634 ATGAATCCTA
* * *** * * * *
45099644 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACATATCTTATC-TCCCAAAGCAG-TAGTGG
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAA-TACAGATCTTGTCTTCCTGTA-CTGACAGCGA
* * *
45099707 AGCAGATTGAAGTCCCCAGCTTTG
64 AGCAGATCGAAGACCCCAGCCTTG
* * *
45099731 TCTCCTTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATA-CAGATCTTGTCTTCCTGTACTGACAGCGAA
* *
45099796 GTAGATCGAAGACCCCAACCTTG
65 GCAGATCGAAGACCCCAGCCTTG
* * * * *
45099819 TCTCCCTGAGCTGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGTAGT-ACTG-G
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAA-TACAGATCTTGTCTTCCT--GTACTGACAGCG
* *
45099882 -AGCAGGTCGAAGTCCCCAGCCTTG
63 AAGCAGATCGAAGACCCCAGCCTTG
* *
45099906 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGACCTTG-CATTCCTGTACTGACGGCGA
1 TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAAT-ACAGATCTTGTC-TTCCTGTACTGACAGCGA
45099970 AGCAGATCGAAGA
64 AGCAGATCGAAGA
45099983 TACCAGTCCT
Statistics
Matches: 206, Mismatches: 35, Indels: 21
0.79 0.13 0.08
Matches are distributed among these distances:
85 4 0.02
86 7 0.03
87 105 0.51
88 82 0.40
89 4 0.02
90 4 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (87 bp):
TCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATACAGATCTTGTCTTCCTGTACTGACAGCGAAG
CAGATCGAAGACCCCAGCCTTG
Found at i:45100012 original size:175 final size:176
Alignment explanation
Indices: 45099642--45100028 Score: 514
Period size: 175 Copynumber: 2.2 Consensus size: 176
45099632 TTATGAATCC
* * *
45099642 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTACATATCTTATCTCCCAAAGCAGTAGTG
1 TATCTCCCTGAGATAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTACTG
* * * * *
45099706 GAGCAGATTGAAGTCCCCAGCTTTGTCTCCTTGAGCAGCAGTGGAGTAGGTTGAAAATAGCAGAT
66 GAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGAC
* * * *
45099771 CTTGTCTTCCTGTATTGGCAGCGAAGTAGATCGAAGACCCCAACCT
131 CTTGTCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAACCT
* * * *
45099817 TGTCTCCCTGAGCT-GCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGTAGTACTG
1 TATCTCCCTGAGATAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTACTG
*
45099881 GAGCAGGTCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGAC
66 GAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGAC
* * *
45099946 CTTG-CATTCCTGTACTGACGGCGAAGCAGATCGAAGATACCAGTCC-
131 CTTGTC-TTCCTGTACTGACAGCGAAGCAGATCGAAGACACCA-ACCT
* * *
45099992 TATCTTCCTG-GATAGCAGTGGAATAGGTTGAAGATTA
1 TATCTCCCTGAGATAGCAGTGGAGTAGGTTGAAAATTA
45100029 TAAGTCCTAT
Statistics
Matches: 184, Mismatches: 24, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
174 3 0.02
175 179 0.97
176 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.26
Consensus pattern (176 bp):
TATCTCCCTGAGATAGCAGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCAAAGCAGTACTG
GAGCAGATCGAAGTCCCCAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATAACAGAC
CTTGTCTTCCTGTACTGACAGCGAAGCAGATCGAAGACACCAACCT
Found at i:45100035 original size:44 final size:44
Alignment explanation
Indices: 45099987--45100072 Score: 145
Period size: 44 Copynumber: 2.0 Consensus size: 44
45099977 CGAAGATACC
* *
45099987 AGTCCTATCTTCCTGGATAGCAGTGGAATAGGTTGAAGATTATA
1 AGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTATA
*
45100031 AGTCCTATCTCCCTGGACAGTAGTGGAATAGGTTGAAGATTA
1 AGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTA
45100073 GAGATCTTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 39 1.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (44 bp):
AGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTATA
Found at i:45100084 original size:44 final size:44
Alignment explanation
Indices: 45099987--45100088 Score: 143
Period size: 44 Copynumber: 2.3 Consensus size: 44
45099977 CGAAGATACC
* * *
45099987 AGTCCTATCTTCCTGGATAGCAGTGGAATAGGTTGAAGATTATA
1 AGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTAGA
*
45100031 AGTCCTATCTCCCTGGACAGTAGTGGAATAGGTTGAAGATTAG-
1 AGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTAGA
*
45100074 AGATCTTATCTCCCT
1 AG-TCCTATCTCCCT
45100089 AAGTAGTAGT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
43 2 0.04
44 50 0.96
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (44 bp):
AGTCCTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTAGA
Found at i:45109938 original size:15 final size:16
Alignment explanation
Indices: 45109918--45109950 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
45109908 TAAGATCGAG
45109918 CATTAGC-GGGTTTTT
1 CATTAGCAGGGTTTTT
*
45109933 CATTAGCAGTGTTTTT
1 CATTAGCAGGGTTTTT
45109949 CA
1 CA
45109951 AAAAACGCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.18, C:0.15, G:0.21, T:0.45
Consensus pattern (16 bp):
CATTAGCAGGGTTTTT
Found at i:45110048 original size:41 final size:40
Alignment explanation
Indices: 45109943--45110048 Score: 124
Period size: 40 Copynumber: 2.6 Consensus size: 40
45109933 CATTAGCAGT
* * *
45109943 GTTTTTC-AAAAAACGCCACTAAAAATGAGCCTTCGCGGC
1 GTTTTTCAAAAAAACGCCACTAAAAATGAGCATTAGCGAC
* *
45109982 GTTTTTCAAAAAAATGCCGCTAAAAATGAGCATTAGCGAC
1 GTTTTTCAAAAAAACGCCACTAAAAATGAGCATTAGCGAC
* * *
45110022 GTTTTTTAGGAAAAACGCCACAAAAAA
1 GTTTTTCA-AAAAAACGCCACTAAAAA
45110049 CCAAAGCCCA
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
39 7 0.13
40 34 0.62
41 14 0.25
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.24
Consensus pattern (40 bp):
GTTTTTCAAAAAAACGCCACTAAAAATGAGCATTAGCGAC
Found at i:45110137 original size:41 final size:41
Alignment explanation
Indices: 45110079--45110239 Score: 200
Period size: 41 Copynumber: 4.0 Consensus size: 41
45110069 TTTCTTACCT
* *
45110079 TTGGGGGCTGTAGCGGCGTTTTTGAAAAAGCGCCGCTAATG
1 TTGGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATG
* *
45110120 ATGGGGTCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATG
1 TTGGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATG
* * **
45110161 TTGGGGTCTTTAGCGGTGTTTTTGAAAATTGCAACG--AATG
1 TTGGGGTCTTTAGCGGCGTTTTTGAAAA-AGCGCCGCTAATG
* * *
45110201 TTGGAGTCTTTAGCGGCGTTTTCGAGAAAGCGCCGCTAA
1 TTGGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
45110240 AAATTTATTT
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 4 0.04
40 28 0.28
41 64 0.64
42 4 0.04
ACGTcount: A:0.20, C:0.16, G:0.33, T:0.30
Consensus pattern (41 bp):
TTGGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATG
Found at i:45110446 original size:25 final size:27
Alignment explanation
Indices: 45110391--45110446 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
45110381 AATCCCTAAT
* * *
45110391 CTTCAGACTTTTCTTCACTCCCGTTTT
1 CTTCAGACTTTTCATCACTCCCGCTTC
45110418 CTTCAGACTTTTCAT-A-TCCCGCTTC
1 CTTCAGACTTTTCATCACTCCCGCTTC
45110443 CTTC
1 CTTC
45110447 TCATTATCTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 11 0.42
26 1 0.04
27 14 0.54
ACGTcount: A:0.12, C:0.36, G:0.07, T:0.45
Consensus pattern (27 bp):
CTTCAGACTTTTCATCACTCCCGCTTC
Found at i:45114600 original size:18 final size:18
Alignment explanation
Indices: 45114577--45114635 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
45114567 AACAGAACTT
45114577 ATGTAATTCTAATATAGA
1 ATGTAATTCTAATATAGA
* * ***
45114595 ATGTAA-AC-AATTTTCTT
1 ATGTAATTCTAA-TATAGA
45114612 ATGTAATTCTAATATAGA
1 ATGTAATTCTAATATAGA
45114630 ATGTAA
1 ATGTAA
45114636 CTTGTTTTAA
Statistics
Matches: 28, Mismatches: 10, Indels: 6
0.64 0.23 0.14
Matches are distributed among these distances:
16 2 0.07
17 9 0.32
18 15 0.54
19 2 0.07
ACGTcount: A:0.42, C:0.07, G:0.10, T:0.41
Consensus pattern (18 bp):
ATGTAATTCTAATATAGA
Found at i:45114900 original size:43 final size:43
Alignment explanation
Indices: 45114836--45115081 Score: 336
Period size: 43 Copynumber: 5.8 Consensus size: 43
45114826 AATCATGTTT
*
45114836 TTAGCGGCGTTTGTGGCAAAAGCGCCGCTAAAGGTCTTGGTCC
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCC
* *
45114879 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGTTCTTGGTCT
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCC
* * *
45114922 TTAGCGGCGTTTGTGGGAGAAGTGCCGCTAAAGGTCTTGGTCT
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCC
* * *
45114965 TTAGCGGCATTTGTGGGAAAAACGCCGCTAAAGGTCTCGGT-C
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCC
* * * *
45115007 TT-TCGGCGTTTGTGGGATAAGCGCCACTAAAGGTCTCGGT-C
1 TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCC
*
45115048 TATAGCGGCGTTTGTGGGACAAGCGCCGCTAAAG
1 T-TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
45115082 TTAGCCACAC
Statistics
Matches: 181, Mismatches: 20, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
41 35 0.19
42 3 0.02
43 143 0.79
ACGTcount: A:0.20, C:0.20, G:0.33, T:0.27
Consensus pattern (43 bp):
TTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTCC
Found at i:45116350 original size:20 final size:20
Alignment explanation
Indices: 45116313--45116350 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
45116303 TTTTGGACCA
*
45116313 ATTAATAGTTATATATATGT
1 ATTAATAGTTATAAATATGT
*
45116333 ATTAATAGTTTTAAATAT
1 ATTAATAGTTATAAATAT
45116351 ATTACTTTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (20 bp):
ATTAATAGTTATAAATATGT
Found at i:45117472 original size:5 final size:5
Alignment explanation
Indices: 45117462--45117493 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
45117452 TCCTCCTACT
45117462 ATATA ATATA ATATA ATATA ATATA ATA-A ATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATA
45117494 GTTTATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:45119353 original size:20 final size:19
Alignment explanation
Indices: 45119328--45119368 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
45119318 TGAAAAAATA
* *
45119328 TTTAAAAGTATTTAACATTT
1 TTTAAAAATATATAA-ATTT
45119348 TTTAAAAATATATAAATTT
1 TTTAAAAATATATAAATTT
45119367 TT
1 TT
45119369 AACATATAGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (19 bp):
TTTAAAAATATATAAATTT
Found at i:45119985 original size:23 final size:24
Alignment explanation
Indices: 45119957--45120002 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
45119947 TAAAATCATT
45119957 AAATAT-TAAATT-AAAAATAATAG
1 AAATATAT-AATTAAAAAATAATAG
*
45119980 AAATATATATTTAAAAAATAATA
1 AAATATATAATTAAAAAATAATA
45120003 ATATGAGTGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 9 0.45
24 11 0.55
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATATATAATTAAAAAATAATAG
Found at i:45122517 original size:285 final size:287
Alignment explanation
Indices: 45121998--45122574 Score: 749
Period size: 285 Copynumber: 2.0 Consensus size: 287
45121988 AGACCCTAAC
* *
45121998 TTGGATAAAATAGTAGTAAAAGATTTTGAGCCTTCTATCTTCAAGGTGATGCTTCCTTTTACTTT
1 TTGGATAAAATAGTAATAAAAGATTTTGAGCCTTCTATCTTCAAGGTGATGCTTCCTATTACTTT
* * *
45122063 CTTTTGGTTTTGGACTTTGAAGAATAAACCAACAATTAAGTATATTGCATAAGGAAAAACTTGCA
66 C---T--TTTTGGACTTTGAAGAATAAACCAACAATTAAGAATATTGCACAAGCAAAAACTTGCA
* * *
45122128 ATAAATATATGATTCTTCTCAATTAATTGAAATAGAAATAGGGTTCAATAAACTGCAGTTCTTAT
126 ATAAATATATGATTCTTCTCAATCAATTGAAATAGAAATAGGATTCAACAAACTGCAGTTCTTAT
*
45122193 ATTTGCCTGGATGTGAAGATCCAAGTGTAGATTTTAGTTA-GATAGATGTGCTTTTTCATTCATT
191 ATTTGCCTGGATGTGAAGATCCAAGTATAGATTTTAGTTATG-TAGATGTGCTTTTTCATTCATT
*
45122257 GGCTAATGAAAGGATTAACTCAAATGAGAATTCAT
255 GGCTAATG-AA-GATCAACTCAAATGAGAATTCAT
* * *
45122292 TTGGATAAAGA-AGTAATGAAAGATTTTGAGTCTTCTATCTTCAAGGTGATGCTTCCTATTAGTT
1 TTGGATAAA-ATAGTAATAAAAGATTTTGAGCCTTCTATCTTCAAGGTGATGCTTCCTATTACTT
* **
45122356 TC-TTTTGGACTTTGAAGAATGAACCTAA-AATTAAGAATATTGCACAAGCAAACCCTTG-AA-A
65 TCTTTTTGGACTTTGAAGAATAAACC-AACAATTAAGAATATTGCACAAGCAAAAACTTGCAATA
* * * * * **
45122417 TA-ATGTGATTCTTCGT-AATCCATTTG-ATTAGAAATAGGATTCAACAAATTGTGGTTCTTATA
129 AATATATGATTCTTC-TCAAT-CAATTGAAATAGAAATAGGATTCAACAAACTGCAGTTCTTATA
* *
45122479 TTTGCCTGGATGTGAAGATCCAAGTATAGATTTTAGTTATGTTGATGTGCTTTTTCATTTATTGG
192 TTTGCCTGGATGTGAAGATCCAAGTATAGATTTTAGTTATGTAGATGTGCTTTTTCATTCATTGG
*
45122544 CTAATGAAGATCATCTCAAATGAGAATTCAT
257 CTAATGAAGATCAACTCAAATGAGAATTCAT
45122575 CATTACCCTT
Statistics
Matches: 252, Mismatches: 26, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
283 21 0.08
284 2 0.01
285 110 0.44
286 8 0.03
287 2 0.01
288 47 0.19
289 2 0.01
294 59 0.23
295 1 0.00
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (287 bp):
TTGGATAAAATAGTAATAAAAGATTTTGAGCCTTCTATCTTCAAGGTGATGCTTCCTATTACTTT
CTTTTTGGACTTTGAAGAATAAACCAACAATTAAGAATATTGCACAAGCAAAAACTTGCAATAAA
TATATGATTCTTCTCAATCAATTGAAATAGAAATAGGATTCAACAAACTGCAGTTCTTATATTTG
CCTGGATGTGAAGATCCAAGTATAGATTTTAGTTATGTAGATGTGCTTTTTCATTCATTGGCTAA
TGAAGATCAACTCAAATGAGAATTCAT
Found at i:45127451 original size:15 final size:15
Alignment explanation
Indices: 45127428--45127460 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
45127418 TTTTACAATC
*
45127428 TCTTTTTCTTTTTCT
1 TCTTCTTCTTTTTCT
45127443 TCTTCTTCTTTTTCT
1 TCTTCTTCTTTTTCT
45127458 TCT
1 TCT
45127461 CTTATGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (15 bp):
TCTTCTTCTTTTTCT
Found at i:45129042 original size:22 final size:22
Alignment explanation
Indices: 45129007--45129059 Score: 54
Period size: 22 Copynumber: 2.4 Consensus size: 22
45128997 TATAGTATAG
*
45129007 ATAAAATGACAAAAATACACTAT
1 ATAAAATAAC-AAAATACACTAT
* **
45129030 -TAAAATAATAAAATTTACTAT
1 ATAAAATAACAAAATACACTAT
45129051 ATAAAATAA
1 ATAAAATAA
45129060 AGATATGTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
21 10 0.40
22 15 0.60
ACGTcount: A:0.62, C:0.08, G:0.02, T:0.28
Consensus pattern (22 bp):
ATAAAATAACAAAATACACTAT
Found at i:45133590 original size:25 final size:25
Alignment explanation
Indices: 45133562--45133694 Score: 76
Period size: 26 Copynumber: 5.3 Consensus size: 25
45133552 CCATTAATCG
*
45133562 GGAAGCTCCAGATAGCCATATATCA
1 GGAAGCTCCAGAGAGCCATATATCA
** * * *
45133587 GGAAATTCAAGCA-AGCTA-ATATTA
1 GGAAGCTCCAG-AGAGCCATATATCA
* *
45133611 GGAAGCACCAGAGAGCCAT-TAACA
1 GGAAGCTCCAGAGAGCCATATATCA
* *
45133635 GGAAGCTCACAAAGAGCC-TTTAATCA
1 GGAAGCTC-CAGAGAGCCATAT-ATCA
* * *
45133661 GGAAGCTCACAAAGAGTCATATATCT
1 GGAAGCTC-CAGAGAGCCATATATCA
*
45133687 GGACGCTC
1 GGAAGCTC
45133695 ATAAGAGCTG
Statistics
Matches: 82, Mismatches: 19, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
23 1 0.01
24 27 0.33
25 21 0.26
26 31 0.38
27 2 0.02
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (25 bp):
GGAAGCTCCAGAGAGCCATATATCA
Found at i:45133668 original size:26 final size:25
Alignment explanation
Indices: 45133622--45133676 Score: 92
Period size: 26 Copynumber: 2.2 Consensus size: 25
45133612 GAAGCACCAG
45133622 AGAGCCATTAACAGGAAGCTCACAA
1 AGAGCCATTAACAGGAAGCTCACAA
*
45133647 AGAGCCTTTAATCAGGAAGCTCACAA
1 AGAGCCATTAA-CAGGAAGCTCACAA
45133673 AGAG
1 AGAG
45133677 TCATATATCT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
25 10 0.36
26 18 0.64
ACGTcount: A:0.42, C:0.22, G:0.22, T:0.15
Consensus pattern (25 bp):
AGAGCCATTAACAGGAAGCTCACAA
Found at i:45136401 original size:42 final size:42
Alignment explanation
Indices: 45136293--45136404 Score: 172
Period size: 42 Copynumber: 2.7 Consensus size: 42
45136283 ATGTGAGCCA
* * *
45136293 GTGTAAGACCATGACTGGGACATGACATTGGCGTGTGATCTC
1 GTGTAAGACCATGTCTTGGACATGGCATTGGCGTGTGATCTC
*
45136335 GTGTAAGACTATGT-TTGGGACATGGCATTGGCGTGTGATCTC
1 GTGTAAGACCATGTCTT-GGACATGGCATTGGCGTGTGATCTC
45136377 GTGTAAGACCATGTCTTGGACATGGCAT
1 GTGTAAGACCATGTCTTGGACATGGCAT
45136405 CGACATCGAT
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
41 1 0.02
42 60 0.95
43 2 0.03
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.29
Consensus pattern (42 bp):
GTGTAAGACCATGTCTTGGACATGGCATTGGCGTGTGATCTC
Found at i:45141492 original size:8 final size:8
Alignment explanation
Indices: 45141481--45141525 Score: 90
Period size: 8 Copynumber: 5.6 Consensus size: 8
45141471 ATTTTCCTTT
45141481 TAAAAAAA
1 TAAAAAAA
45141489 TAAAAAAA
1 TAAAAAAA
45141497 TAAAAAAA
1 TAAAAAAA
45141505 TAAAAAAA
1 TAAAAAAA
45141513 TAAAAAAA
1 TAAAAAAA
45141521 TAAAA
1 TAAAA
45141526 TTTAATTAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 37 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (8 bp):
TAAAAAAA
Found at i:45142454 original size:6 final size:6
Alignment explanation
Indices: 45142443--45142472 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
45142433 TCCCAACCCT
45142443 CCAATC CCAATC CCAATC CCAATC CCAATC
1 CCAATC CCAATC CCAATC CCAATC CCAATC
45142473 TCATCATCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.50, G:0.00, T:0.17
Consensus pattern (6 bp):
CCAATC
Found at i:45149284 original size:23 final size:23
Alignment explanation
Indices: 45149258--45149301 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
45149248 TAATTTCAAG
45149258 TTTAAATTT-GTGCTAAATATTTT
1 TTTAAATTTGGT-CTAAATATTTT
**
45149281 TTTATTTTTGGTCTAAATATT
1 TTTAAATTTGGTCTAAATATT
45149302 GTATACATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 16 0.89
24 2 0.11
ACGTcount: A:0.27, C:0.05, G:0.09, T:0.59
Consensus pattern (23 bp):
TTTAAATTTGGTCTAAATATTTT
Found at i:45149455 original size:23 final size:24
Alignment explanation
Indices: 45149421--45149473 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
45149411 TAAATTCTCA
45149421 ACTTTTTAAAAATAGTTCAATTTG
1 ACTTTTTAAAAATAGTTCAATTTG
45149445 ACTTTTTAAAAATAGTTCAATTTG
1 ACTTTTTAAAAATAGTTCAATTTG
45149469 ACTTT
1 ACTTT
45149474 GAACCTTTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.36, C:0.09, G:0.08, T:0.47
Consensus pattern (24 bp):
ACTTTTTAAAAATAGTTCAATTTG
Found at i:45154814 original size:13 final size:13
Alignment explanation
Indices: 45154796--45154859 Score: 101
Period size: 13 Copynumber: 4.9 Consensus size: 13
45154786 AGTTCTTCAT
*
45154796 TGCTTTTGAGAAA
1 TGCTTTTGAGAAG
45154809 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
*
45154822 TGCTTTTCAGAAG
1 TGCTTTTGAGAAG
45154835 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
*
45154848 TACTTTTGAGAA
1 TGCTTTTGAGAA
45154860 ATTTGAGTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 47 1.00
ACGTcount: A:0.27, C:0.09, G:0.25, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:45191664 original size:6 final size:6
Alignment explanation
Indices: 45191644--45191678 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
45191634 GCTCAACCCT
*
45191644 CCAAT- CCAATC CCAATG CCAATC CCAATC CCAATC
1 CCAATC CCAATC CCAATC CCAATC CCAATC CCAATC
45191679 TCATCATCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.34, C:0.46, G:0.03, T:0.17
Consensus pattern (6 bp):
CCAATC
Found at i:45195175 original size:49 final size:49
Alignment explanation
Indices: 45195103--45195201 Score: 198
Period size: 49 Copynumber: 2.0 Consensus size: 49
45195093 TTGAAGAGAA
45195103 AGCTTCAAAGTTGAATGTATGCATAACACTTCCATTTCTGAGTTTCCTG
1 AGCTTCAAAGTTGAATGTATGCATAACACTTCCATTTCTGAGTTTCCTG
45195152 AGCTTCAAAGTTGAATGTATGCATAACACTTCCATTTCTGAGTTTCCTG
1 AGCTTCAAAGTTGAATGTATGCATAACACTTCCATTTCTGAGTTTCCTG
45195201 A
1 A
45195202 TGCAAAGAAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.27, C:0.20, G:0.16, T:0.36
Consensus pattern (49 bp):
AGCTTCAAAGTTGAATGTATGCATAACACTTCCATTTCTGAGTTTCCTG
Found at i:45219721 original size:40 final size:40
Alignment explanation
Indices: 45219691--45219782 Score: 139
Period size: 40 Copynumber: 2.3 Consensus size: 40
45219681 CGTTTTTTTA
45219691 TAAACGCCGCTAATGCTCACTCTCTAGCGGCGCTTTTCCT
1 TAAACGCCGCTAATGCTCACTCTCTAGCGGCGCTTTTCCT
* * *
45219731 TAAACGCCGCTAATGCTCACTCTTTAGTGGCTCTTTTCCT
1 TAAACGCCGCTAATGCTCACTCTCTAGCGGCGCTTTTCCT
* *
45219771 AAAACGCTGCTA
1 TAAACGCCGCTA
45219783 TTTCTCGATT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.21, C:0.32, G:0.16, T:0.32
Consensus pattern (40 bp):
TAAACGCCGCTAATGCTCACTCTCTAGCGGCGCTTTTCCT
Found at i:45220558 original size:27 final size:27
Alignment explanation
Indices: 45220504--45220561 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
45220494 AAAAAAACTA
* *
45220504 AAAATAATTTGTTTAGCAATACGAGAG
1 AAAATAATTGGTTTAGAAATACGAGAG
*
45220531 AAAATAATTGGTTTAAGAAAT-CGGGAG
1 AAAATAATTGGTTT-AGAAATACGAGAG
45220558 AAAA
1 AAAA
45220562 AATGAGCTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
27 22 0.81
28 5 0.19
ACGTcount: A:0.48, C:0.05, G:0.21, T:0.26
Consensus pattern (27 bp):
AAAATAATTGGTTTAGAAATACGAGAG
Found at i:45228157 original size:28 final size:28
Alignment explanation
Indices: 45228103--45228158 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
45228093 TTTAAAATAA
* * *
45228103 TTTTGTATAAATAGAAGATAACTAATTT
1 TTTTATATAAATAGAAAATAACAAATTT
45228131 TTTTATATAAAATAGAAAATAA-AAATTT
1 TTTTATAT-AAATAGAAAATAACAAATTT
45228159 ATATTTTTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 12 0.50
29 12 0.50
ACGTcount: A:0.50, C:0.02, G:0.07, T:0.41
Consensus pattern (28 bp):
TTTTATATAAATAGAAAATAACAAATTT
Found at i:45237061 original size:8 final size:8
Alignment explanation
Indices: 45237048--45237074 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
45237038 AGAGAAGAAT
45237048 AAAAAATA
1 AAAAAATA
45237056 AAAAAATA
1 AAAAAATA
45237064 AAAAAATA
1 AAAAAATA
45237072 AAA
1 AAA
45237075 TCTAACTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAAATA
Found at i:45237921 original size:83 final size:83
Alignment explanation
Indices: 45237775--45237934 Score: 214
Period size: 83 Copynumber: 1.9 Consensus size: 83
45237765 TGTTAGAGGC
* * * * *
45237775 TGCGACTCTTCACGTACGAGCCTTAATATGATAGCTAAGAGCTTTGCTCTCGCTAACTGTGTTGG
1 TGCGACTCTTCACCTACGAGCCATAATATAATAGCTAAGAGCTTTGCTCTCCCTAACTATGTTGG
*
45237840 AGGTTGCGGCTCACAGGT
66 AGGCTGCGGCTCACAGGT
* ** *
45237858 TGCGGCTCTTCACCTACGAGCCATAATATAATAGCTGGGAG-TTCTGCTTTCCCTAACTATGTTG
1 TGCGACTCTTCACCTACGAGCCATAATATAATAGCTAAGAGCTT-TGCTCTCCCTAACTATGTTG
45237922 GAGGCTGCGGCTC
65 GAGGCTGCGGCTC
45237935 TTCACCTGCG
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
82 2 0.03
83 64 0.97
ACGTcount: A:0.20, C:0.24, G:0.26, T:0.30
Consensus pattern (83 bp):
TGCGACTCTTCACCTACGAGCCATAATATAATAGCTAAGAGCTTTGCTCTCCCTAACTATGTTGG
AGGCTGCGGCTCACAGGT
Found at i:45237983 original size:69 final size:69
Alignment explanation
Indices: 45237858--45238224 Score: 382
Period size: 69 Copynumber: 5.3 Consensus size: 69
45237848 GCTCACAGGT
* * * * *
45237858 TGCGGCTCTTCACCTACGAGCCATAATATAATAGCTGGGAG-TTCTGCTT-TCCCTAACTATGTT
1 TGCGGCTCTTCACCTACGAGCCTTAATATGACAGCTGGGAGCTT-TG-TTCTCGCTAACTGTGTT
45237921 GGAGGC
64 GGAGGC
* * * *
45237927 TGCGGCTCTTCACCTGCGAGCCTTAATATGACAGATGAGAGCTTTGTTCTCGCTAACTATGTTGG
1 TGCGGCTCTTCACCTACGAGCCTTAATATGACAGCTGGGAGCTTTGTTCTCGCTAACTGTGTTGG
45237992 AGGC
66 AGGC
* * * * **
45237996 TACGACTCTTCACCTATGAGCCTTAATATGACTGCTGGGAGCTTTACTCTCGCTAACTGTGTTGG
1 TGCGGCTCTTCACCTACGAGCCTTAATATGACAGCTGGGAGCTTTGTTCTCGCTAACTGTGTTGG
45238061 AGGC
66 AGGC
* * ** * * *
45238065 TGCGACTCTTCACTTGTGAACCTTAATATGACAGCTGAGAGC-TTGTAACTCTCGCTAACTGCGT
1 TGCGGCTCTTCACCTACGAGCCTTAATATGACAGCTGGGAGCTTTGT---TCTCGCTAACTGTGT
45238129 TGGAGGC
63 TGGAGGC
* * * * *
45238136 TGTGGCTCTTTACCTTCGAGCCTTAATATGACAGTTGGGAGCTTTGCTCTCGCT-ACTTGTGTTG
1 TGCGGCTCTTCACCTACGAGCCTTAATATGACAGCTGGGAGCTTTGTTCTCGCTAAC-TGTGTTG
45238200 GAGGC
65 GAGGC
* * *
45238205 TGTGGTTATTCACCTACGAG
1 TGCGGCTCTTCACCTACGAG
45238225 TTTTATGTTC
Statistics
Matches: 250, Mismatches: 41, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
68 6 0.02
69 185 0.74
70 2 0.01
71 54 0.22
72 3 0.01
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.32
Consensus pattern (69 bp):
TGCGGCTCTTCACCTACGAGCCTTAATATGACAGCTGGGAGCTTTGTTCTCGCTAACTGTGTTGG
AGGC
Found at i:45238180 original size:140 final size:138
Alignment explanation
Indices: 45237860--45238206 Score: 423
Period size: 138 Copynumber: 2.5 Consensus size: 138
45237850 TCACAGGTTG
* * * * * * *
45237860 CGGCTCTTCACCTACGAGCCATAATATAATAGCTGGGAG-TTCTGCTTTCCCTAACTATGTTGGA
1 CGGCTCTTCACCTTCGAGCCTTAATATGACAGCTGGGAGCTT-TGCTCTCGCTAACTGTGTTGGA
* * *
45237924 GGCTGCGGCTCTTCACCTGCGAGCCTTAATATGACAGATGAGAGCTTTGTTCTCGCTAACTATGT
65 GGCTGCGACTCTTCACCTGCGAACCTTAATATGACAGATGAGAGCTTTGTTCTCGCTAACTACGT
45237989 TGGAGGCTA
130 TGGAGGCTA
* * *
45237998 CGACTCTTCACCTAT-GAGCCTTAATATGACTGCTGGGAGCTTTACTCTCGCTAACTGTGTTGGA
1 CGGCTCTTCACCT-TCGAGCCTTAATATGACAGCTGGGAGCTTTGCTCTCGCTAACTGTGTTGGA
* * * *
45238062 GGCTGCGACTCTTCACTTGTGAACCTTAATATGACAGCTGAGAGC-TTGTAACTCTCGCTAACTG
65 GGCTGCGACTCTTCACCTGCGAACCTTAATATGACAGATGAGAGCTTTGT---TCTCGCTAACTA
*
45238126 CGTTGGAGGCTG
127 CGTTGGAGGCTA
* * *
45238138 TGGCTCTTTACCTTCGAGCCTTAATATGACAGTTGGGAGCTTTGCTCTCGCT-ACTTGTGTTGGA
1 CGGCTCTTCACCTTCGAGCCTTAATATGACAGCTGGGAGCTTTGCTCTCGCTAAC-TGTGTTGGA
45238202 GGCTG
65 GGCTG
45238207 TGGTTATTCA
Statistics
Matches: 178, Mismatches: 24, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
137 4 0.02
138 90 0.51
139 5 0.03
140 79 0.44
ACGTcount: A:0.20, C:0.24, G:0.25, T:0.32
Consensus pattern (138 bp):
CGGCTCTTCACCTTCGAGCCTTAATATGACAGCTGGGAGCTTTGCTCTCGCTAACTGTGTTGGAG
GCTGCGACTCTTCACCTGCGAACCTTAATATGACAGATGAGAGCTTTGTTCTCGCTAACTACGTT
GGAGGCTA
Found at i:45238983 original size:85 final size:85
Alignment explanation
Indices: 45238840--45239008 Score: 338
Period size: 85 Copynumber: 2.0 Consensus size: 85
45238830 ACTTTTTCAT
45238840 ATGAAAAAGTAATAAGAATGAAAAATGAAAAGGTCGTCTTATTAAAAACCCCAATTATGAAATCC
1 ATGAAAAAGTAATAAGAATGAAAAATGAAAAGGTCGTCTTATTAAAAACCCCAATTATGAAATCC
45238905 CCTCTCTCCCACTTCACACA
66 CCTCTCTCCCACTTCACACA
45238925 ATGAAAAAGTAATAAGAATGAAAAATGAAAAGGTCGTCTTATTAAAAACCCCAATTATGAAATCC
1 ATGAAAAAGTAATAAGAATGAAAAATGAAAAGGTCGTCTTATTAAAAACCCCAATTATGAAATCC
45238990 CCTCTCTCCCACTTCACAC
66 CCTCTCTCCCACTTCACAC
45239009 CTCGAAATGT
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 84 1.00
ACGTcount: A:0.43, C:0.22, G:0.11, T:0.24
Consensus pattern (85 bp):
ATGAAAAAGTAATAAGAATGAAAAATGAAAAGGTCGTCTTATTAAAAACCCCAATTATGAAATCC
CCTCTCTCCCACTTCACACA
Found at i:45249376 original size:3 final size:3
Alignment explanation
Indices: 45249354--45249403 Score: 73
Period size: 3 Copynumber: 16.3 Consensus size: 3
45249344 ATATAATGAG
* *
45249354 AAT AAC AAT GAT ATAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
45249400 AAT A
1 AAT A
45249404 TAAAATTTGT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
3 39 0.93
4 3 0.07
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:45252883 original size:6 final size:6
Alignment explanation
Indices: 45252876--45253017 Score: 81
Period size: 6 Copynumber: 23.7 Consensus size: 6
45252866 TGACTTTCAT
* * * * * * * *
45252876 TCTCAT TCTCGC TCACAC TCTCAT TTTCAC TCACAC TCTCAT TCTCAA
1 TCTCAC TCTCAC TCTCAC TCTCAC TCTCAC TCTCAC TCTCAC TCTCAC
* * *
45252924 TCTCAC TCTCAC CCTCAC T-TACAC TCTCAC CCTCAC T-TACAC TCTCAT
1 TCTCAC TCTCAC TCTCAC TCT-CAC TCTCAC TCTCAC TCT-CAC TCTCAC
* * * * * * * *
45252972 TCTCGC TCTCAT TCTCAT TTTCAC TCACAC TCACAT TCTCAT TCTC
1 TCTCAC TCTCAC TCTCAC TCTCAC TCTCAC TCTCAC TCTCAC TCTC
45253018 GTTCTTCATC
Statistics
Matches: 103, Mismatches: 29, Indels: 8
0.74 0.21 0.06
Matches are distributed among these distances:
5 2 0.02
6 99 0.96
7 2 0.02
ACGTcount: A:0.20, C:0.42, G:0.01, T:0.37
Consensus pattern (6 bp):
TCTCAC
Found at i:45252899 original size:18 final size:18
Alignment explanation
Indices: 45252876--45253012 Score: 139
Period size: 18 Copynumber: 7.6 Consensus size: 18
45252866 TGACTTTCAT
*
45252876 TCTCATTCTCGCTCACAC
1 TCTCATTCTCACTCACAC
*
45252894 TCTCATTTTCACTCACAC
1 TCTCATTCTCACTCACAC
* *
45252912 TCTCATTCTCAATCTCAC
1 TCTCATTCTCACTCACAC
** *
45252930 TCTCACCCTCACTTACAC
1 TCTCATTCTCACTCACAC
** *
45252948 TCTCACCCTCACTTACAC
1 TCTCATTCTCACTCACAC
* * *
45252966 TCTCATTCTCGCTCTCAT
1 TCTCATTCTCACTCACAC
*
45252984 TCTCATTTTCACTCACAC
1 TCTCATTCTCACTCACAC
*
45253002 TCACATTCTCA
1 TCTCATTCTCA
45253013 TTCTCGTTCT
Statistics
Matches: 97, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 97 1.00
ACGTcount: A:0.20, C:0.42, G:0.01, T:0.36
Consensus pattern (18 bp):
TCTCATTCTCACTCACAC
Found at i:45253670 original size:20 final size:21
Alignment explanation
Indices: 45253626--45253677 Score: 65
Period size: 19 Copynumber: 2.6 Consensus size: 21
45253616 ATTTTAATAA
*
45253626 TTTTCTATATTTTTAAATATT
1 TTTTCTATAATTTTAAATATT
45253647 TTTTC-ATAATTTTAAAT-TT
1 TTTTCTATAATTTTAAATATT
*
45253666 TTTT-TGTAATTT
1 TTTTCTATAATTT
45253678 ACATATACTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 12 0.43
20 11 0.39
21 5 0.18
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (21 bp):
TTTTCTATAATTTTAAATATT
Found at i:45253677 original size:19 final size:20
Alignment explanation
Indices: 45253626--45253669 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
45253616 ATTTTAATAA
*
45253626 TTTTCTATATTTTTAAATATT
1 TTTTC-ATAATTTTAAATATT
45253647 TTTTCATAATTTTAAAT-TT
1 TTTTCATAATTTTAAATATT
45253666 TTTT
1 TTTT
45253670 TGTAATTTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.27
20 11 0.50
21 5 0.23
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTCATAATTTTAAATATT
Found at i:45254017 original size:105 final size:105
Alignment explanation
Indices: 45253884--45254364 Score: 953
Period size: 105 Copynumber: 4.6 Consensus size: 105
45253874 TTTTATGCTT
45253884 TTTATAATATTTTGTAAATTTTATTAACAATTTTAATAATTTTCTATCTTTTTAAATATTTACGA
1 TTTATAATATTTTGTAAATTTTATTAACAATTTTAATAATTTTCTATCTTTTTAAATATTTACGA
45253949 CTGATGATTTCTTCTTCTTCTTTTTCAAAATTCAATTTTG
66 CTGATGATTTCTTCTTCTTCTTTTTCAAAATTCAATTTTG
45253989 TTTATAATATTTTGTAAATTTTATTAACAATTTTAATAATTTTCTATCTTTTTAAATATTTACGA
1 TTTATAATATTTTGTAAATTTTATTAACAATTTTAATAATTTTCTATCTTTTTAAATATTTACGA
45254054 CTGATGATTTCTTCTTCTTCTTTTTCAAAATTCAATTTTG
66 CTGATGATTTCTTCTTCTTCTTTTTCAAAATTCAATTTTG
45254094 TTTATAATATTTTGTAAATTTTATTAACAATTTTAATAATTTTCTATCTTTTTAAATATTTACGA
1 TTTATAATATTTTGTAAATTTTATTAACAATTTTAATAATTTTCTATCTTTTTAAATATTTACGA
45254159 CTGATGATTTCTTCTTCTTCTTTTTCAAAATTCAATTTTG
66 CTGATGATTTCTTCTTCTTCTTTTTCAAAATTCAATTTTG
45254199 TTTATAATATTTTGTAAATTTTATTAACAATTTTAATAATTTTCTATCTTTTTAAATATTTACGA
1 TTTATAATATTTTGTAAATTTTATTAACAATTTTAATAATTTTCTATCTTTTTAAATATTTACGA
45254264 CTGATGATTTCTTCTTCTTCTTTTTCAAAATTCAATTTTG
66 CTGATGATTTCTTCTTCTTCTTTTTCAAAATTCAATTTTG
*
45254304 TTTATAATATTTTGTAAATTTTATTAACAATTTTAATAATTTTCTATATTTTTAAATATTT
1 TTTATAATATTTTGTAAATTTTATTAACAATTTTAATAATTTTCTATCTTTTTAAATATTT
45254365 TTTCATAATT
Statistics
Matches: 375, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
105 375 1.00
ACGTcount: A:0.30, C:0.10, G:0.04, T:0.56
Consensus pattern (105 bp):
TTTATAATATTTTGTAAATTTTATTAACAATTTTAATAATTTTCTATCTTTTTAAATATTTACGA
CTGATGATTTCTTCTTCTTCTTTTTCAAAATTCAATTTTG
Found at i:45254355 original size:39 final size:38
Alignment explanation
Indices: 45254310--45254396 Score: 97
Period size: 39 Copynumber: 2.3 Consensus size: 38
45254300 TTTGTTTATA
45254310 ATATTTTGTAAAT-TTTATTAACAATTTTAATAATTTTCT
1 ATATTTTGTAAATATTTATTAACAATTTT-A-AATTTTCT
* * * *
45254349 ATATTTT-TAAATATTTTTTCATAATTTTAAATTTTTT
1 ATATTTTGTAAATATTTATTAACAATTTTAAATTTTCT
*
45254386 ATTTTTTGTAA
1 ATATTTTGTAA
45254397 TTTACATATG
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
37 13 0.32
38 9 0.22
39 19 0.46
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.61
Consensus pattern (38 bp):
ATATTTTGTAAATATTTATTAACAATTTTAAATTTTCT
Found at i:45254366 original size:20 final size:20
Alignment explanation
Indices: 45254343--45254385 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
45254333 ATTTTAATAA
*
45254343 TTTTCTATATTTTTAAATATT
1 TTTTC-ATAATTTTAAATATT
45254364 TTTTCATAATTTTAAAT-TT
1 TTTTCATAATTTTAAATATT
45254383 TTT
1 TTT
45254386 ATTTTTTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.24
20 11 0.52
21 5 0.24
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTCATAATTTTAAATATT
Found at i:45254491 original size:17 final size:18
Alignment explanation
Indices: 45254451--45254491 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
45254441 ATATTTAATA
*
45254451 ATTTATATATTTTATTTC
1 ATTTATATATGTTATTTC
45254469 ATTTATAATATGTT-TTT-
1 ATTTAT-ATATGTTATTTC
45254486 ATTTAT
1 ATTTAT
45254492 TTTTTTTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.29
18 9 0.43
19 6 0.29
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.66
Consensus pattern (18 bp):
ATTTATATATGTTATTTC
Found at i:45255236 original size:18 final size:17
Alignment explanation
Indices: 45255198--45255239 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
45255188 TCATGAACTC
*
45255198 AAAAAATAAATAATAAA
1 AAAAAATAAATAACAAA
45255215 AAAAACATAAA-AACAAA
1 AAAAA-ATAAATAACAAA
45255232 TAAAAAAT
1 -AAAAAAT
45255240 GTCATTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.81, C:0.05, G:0.00, T:0.14
Consensus pattern (17 bp):
AAAAAATAAATAACAAA
Found at i:45255282 original size:18 final size:21
Alignment explanation
Indices: 45255243--45255282 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
45255233 AAAAAATGTC
45255243 ATTATTTATAATAATAACTTA
1 ATTATTTATAATAATAACTTA
45255264 ATTATTT-TAA-AAT-ACTTA
1 ATTATTTATAATAATAACTTA
45255282 A
1 A
45255283 GTTTTGAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 6 0.32
19 3 0.16
20 3 0.16
21 7 0.37
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (21 bp):
ATTATTTATAATAATAACTTA
Found at i:45259590 original size:19 final size:20
Alignment explanation
Indices: 45259568--45259609 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
45259558 ATTTTAATAA
*
45259568 TTTTCCAT-ATTTTTAAATT
1 TTTTCCATAATTTTAAAATT
*
45259587 TTTTTCATAATTTTAAAATT
1 TTTTCCATAATTTTAAAATT
45259607 TTT
1 TTT
45259610 ATTTTTTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTTCCATAATTTTAAAATT
Found at i:45259599 original size:38 final size:38
Alignment explanation
Indices: 45259535--45259608 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 38
45259525 GCTTTTTATA
45259535 ATATTTTGTAAATTTTATTAACAATTTTAATAATTTTCC
1 ATATTTTGTAAATTTTATTAACAATTTTAA-AATTTTCC
* * *
45259574 ATATTTT-TAAATTTTTTTCATAATTTTAAAATTTT
1 ATATTTTGTAAATTTTATTAACAATTTTAAAATTTT
45259609 TATTTTTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
37 6 0.19
38 19 0.59
39 7 0.22
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.58
Consensus pattern (38 bp):
ATATTTTGTAAATTTTATTAACAATTTTAAAATTTTCC
Found at i:45259657 original size:28 final size:26
Alignment explanation
Indices: 45259626--45259697 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 26
45259616 TTGTAATTTG
*
45259626 CATATTCTTTTTGTTATTTTAATAATT
1 CATATTTTTTTTGTT-TTTTAATAATT
45259653 ACATATGTTTTTTTGGAGTTTTTTAATAATT
1 -CATAT-TTTTTTT---GTTTTTTAATAATT
*
45259684 TATATTTTTTTTGT
1 CATATTTTTTTTGT
45259698 ACTTTTATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
26 2 0.05
28 5 0.13
29 13 0.34
30 4 0.11
31 11 0.29
32 3 0.08
ACGTcount: A:0.24, C:0.04, G:0.08, T:0.64
Consensus pattern (26 bp):
CATATTTTTTTTGTTTTTTAATAATT
Found at i:45261475 original size:12 final size:12
Alignment explanation
Indices: 45261449--45261483 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
45261439 TTGGGGAGCA
45261449 AAAAGAAATGAAG
1 AAAAGAAA-GAAG
45261462 AAAAGAAAGAAG
1 AAAAGAAAGAAG
*
45261474 AAAGGAAAGA
1 AAAAGAAAGA
45261484 GTGAAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 13 0.62
13 8 0.38
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (12 bp):
AAAAGAAAGAAG
Found at i:45262253 original size:19 final size:20
Alignment explanation
Indices: 45262231--45262272 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
45262221 ATTTTAATAA
*
45262231 TTTTCCAT-ATTTTTAAATT
1 TTTTCCATAATTTTAAAATT
*
45262250 TTTTTCATAATTTTAAAATT
1 TTTTCCATAATTTTAAAATT
45262270 TTT
1 TTT
45262273 ATTTTTTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.29, C:0.07, G:0.00, T:0.64
Consensus pattern (20 bp):
TTTTCCATAATTTTAAAATT
Found at i:45262262 original size:38 final size:38
Alignment explanation
Indices: 45262198--45262271 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 38
45262188 GCTTTTTATA
45262198 ATATTTTGTAAATTTTATTAACAATTTTAATAATTTTCC
1 ATATTTTGTAAATTTTATTAACAATTTTAA-AATTTTCC
* * *
45262237 ATATTTT-TAAATTTTTTTCATAATTTTAAAATTTT
1 ATATTTTGTAAATTTTATTAACAATTTTAAAATTTT
45262272 TATTTTTTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
37 6 0.19
38 19 0.59
39 7 0.22
ACGTcount: A:0.35, C:0.05, G:0.01, T:0.58
Consensus pattern (38 bp):
ATATTTTGTAAATTTTATTAACAATTTTAAAATTTTCC
Found at i:45262320 original size:28 final size:26
Alignment explanation
Indices: 45262289--45262360 Score: 72
Period size: 29 Copynumber: 2.5 Consensus size: 26
45262279 TTGTAATTTG
*
45262289 CATATTCTTTTTGTTATTTTAATAATT
1 CATATTTTTTTTGTT-TTTTAATAATT
45262316 ACATATGTTTTTTTGGAGTTTTTTAATAATT
1 -CATAT-TTTTTTT---GTTTTTTAATAATT
*
45262347 TATATTTTTTTTGT
1 CATATTTTTTTTGT
45262361 ACTTTTATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
26 2 0.05
28 5 0.13
29 13 0.34
30 4 0.11
31 11 0.29
32 3 0.08
ACGTcount: A:0.24, C:0.04, G:0.08, T:0.64
Consensus pattern (26 bp):
CATATTTTTTTTGTTTTTTAATAATT
Found at i:45269254 original size:3 final size:3
Alignment explanation
Indices: 45269246--45269301 Score: 105
Period size: 3 Copynumber: 19.0 Consensus size: 3
45269236 ACGTATTGCA
45269246 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
45269293 AAT AAT AAT
1 AAT AAT AAT
45269302 TTGTTCCATG
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 50 0.96
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:45270828 original size:6 final size:6
Alignment explanation
Indices: 45270815--45270946 Score: 111
Period size: 6 Copynumber: 22.0 Consensus size: 6
45270805 ACTTGTCGTG
* * * * * * *
45270815 ACTCTC ATTCTC ATTCTC GCTCAC ACTCGC ACTCTC ATTCTC ATTCTC
1 ACTCTC ACTCTC ACTCTC ACTCTC ACTCTC ACTCTC ACTCTC ACTCTC
* * * * * * *
45270863 GCTCAC ACTCTC ACTCTC ATTCTC GCTCAC ACTCTC AATCTC ACTCAC
1 ACTCTC ACTCTC ACTCTC ACTCTC ACTCTC ACTCTC ACTCTC ACTCTC
* * *
45270911 ACTCTC ACTCTC ACCCTC ACTCAC ACTCTC ATTCTC
1 ACTCTC ACTCTC ACTCTC ACTCTC ACTCTC ACTCTC
45270947 GTTCTTCATC
Statistics
Matches: 98, Mismatches: 28, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
6 98 1.00
ACGTcount: A:0.19, C:0.45, G:0.03, T:0.33
Consensus pattern (6 bp):
ACTCTC
Found at i:45270851 original size:30 final size:30
Alignment explanation
Indices: 45270815--45270886 Score: 135
Period size: 30 Copynumber: 2.4 Consensus size: 30
45270805 ACTTGTCGTG
45270815 ACTCTCATTCTCATTCTCGCTCACACTCGC
1 ACTCTCATTCTCATTCTCGCTCACACTCGC
*
45270845 ACTCTCATTCTCATTCTCGCTCACACTCTC
1 ACTCTCATTCTCATTCTCGCTCACACTCGC
45270875 ACTCTCATTCTC
1 ACTCTCATTCTC
45270887 GCTCACACTC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.17, C:0.43, G:0.04, T:0.36
Consensus pattern (30 bp):
ACTCTCATTCTCATTCTCGCTCACACTCGC
Found at i:45279973 original size:106 final size:103
Alignment explanation
Indices: 45279712--45280000 Score: 454
Period size: 103 Copynumber: 2.7 Consensus size: 103
45279702 TCATTTCTTC
*
45279712 AAATTTCAATTTTGTTTATAATATTTTGTAAATTTTATTAACAATTTTAATAATTTTCTATATTT
1 AAATTT-AA-TTT-TTTATAATATTTTGTAAATTTTATTAACAATTTTAATAATTTCCTATATTT
* *
45279777 TTAAATA-TTTACGACTGATGATTTCTTCTTCTTCTTTTTCA
63 TTAAATATTTTTC-ATTGATGATTTCTTCTTCTTCTTTTTCA
*
45279818 AAATTTAATTTTTTATAATATTTTGGAAATTTTATTAACAATTTTAATAATTTCCTATATTTTTA
1 AAATTTAATTTTTTATAATATTTTGTAAATTTTATTAACAATTTTAATAATTTCCTATATTTTTA
45279883 AATATTTTTCATTGATGATTTCTTCTTCTTCTTCTTTTCA
66 AATATTTTTCATTGATGATTTCTTCTTCTTC-T-TTTTCA
**
45279923 AAATTTAATTTTTATATAATATTTTGTAAATTTTAAGAACAATTTTAATAATTTCCTATATTTTT
1 AAATTTAATTTTT-TATAATATTTTGTAAATTTTATTAACAATTTTAATAATTTCCTATATTTTT
45279988 AAATATTTTTCAT
65 AAATATTTTTCAT
45280001 AATTTTAATT
Statistics
Matches: 172, Mismatches: 7, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
103 76 0.44
104 8 0.05
105 21 0.12
106 67 0.39
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (103 bp):
AAATTTAATTTTTTATAATATTTTGTAAATTTTATTAACAATTTTAATAATTTCCTATATTTTTA
AATATTTTTCATTGATGATTTCTTCTTCTTCTTTTTCA
Found at i:45280163 original size:26 final size:26
Alignment explanation
Indices: 45280134--45280183 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
45280124 ACTTTTATAC
*
45280134 ATTTTTATAAATTTATAATATTTTAA
1 ATTTGTATAAATTTATAATATTTTAA
* * *
45280160 ATTTGTATATATTTGTATTATTTT
1 ATTTGTATAAATTTATAATATTTT
45280184 TAATATAAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (26 bp):
ATTTGTATAAATTTATAATATTTTAA
Found at i:45283197 original size:40 final size:39
Alignment explanation
Indices: 45283153--45283251 Score: 121
Period size: 39 Copynumber: 2.5 Consensus size: 39
45283143 ACTTTAGTAA
**
45283153 ATTGGGTTGGTAAATTGGGTAGTCTTTTAGTTTTAGTTTT
1 ATTGGGTTGGTAAATTGGGTAAAC-TTTAGTTTTAGTTTT
*
45283193 ATTGGATTGGGT-AATTGGGTAAACTTTAGTTTTAGTTTT
1 ATTGGGTT-GGTAAATTGGGTAAACTTTAGTTTTAGTTTT
*
45283232 ATCGGGTTGG-ATAATTGGGT
1 ATTGGGTTGGTA-AATTGGGT
45283252 TTGGGTTGGG
Statistics
Matches: 51, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
38 2 0.04
39 29 0.57
40 17 0.33
41 3 0.06
ACGTcount: A:0.20, C:0.03, G:0.29, T:0.47
Consensus pattern (39 bp):
ATTGGGTTGGTAAATTGGGTAAACTTTAGTTTTAGTTTT
Found at i:45289241 original size:20 final size:20
Alignment explanation
Indices: 45289205--45289243 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
45289195 GTGGTTCTAA
*
45289205 CCATTTTTAATTATTTATTT
1 CCATTTTTAACTATTTATTT
45289225 CCATTCTTTAACT-TTTATT
1 CCATT-TTTAACTATTTATT
45289244 CTAACTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.23, C:0.15, G:0.00, T:0.62
Consensus pattern (20 bp):
CCATTTTTAACTATTTATTT
Found at i:45292523 original size:23 final size:22
Alignment explanation
Indices: 45292494--45292541 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
45292484 AAATGGAATA
* *
45292494 AAAAAAACTTTAAGTATCAAACT
1 AAAAAAA-TTCAAATATCAAACT
*
45292517 AAAAAAATTCAAATATCAAATT
1 AAAAAAATTCAAATATCAAACT
45292539 AAA
1 AAA
45292542 CATTAAAACT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.62, C:0.10, G:0.02, T:0.25
Consensus pattern (22 bp):
AAAAAAATTCAAATATCAAACT
Found at i:45292610 original size:54 final size:53
Alignment explanation
Indices: 45292508--45292610 Score: 143
Period size: 54 Copynumber: 1.9 Consensus size: 53
45292498 AAACTTTAAG
*
45292508 TATCAAACTAAAAAAATTCAAATATCAAATTAAACATTAAAACTAAACTCAAA
1 TATCAAACTAAAAAAATTCAAATATCAAATTAAACATTAAAACGAAACTCAAA
* ** * *
45292561 TATCAAATTAAAAAATATTTTAATATCAAATTTAACATTAAAGCGAAACT
1 TATCAAACTAAAAAA-ATTCAAATATCAAATTAAACATTAAAACGAAACT
45292611 TAAGTTTAAC
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 14 0.33
54 29 0.67
ACGTcount: A:0.56, C:0.13, G:0.02, T:0.29
Consensus pattern (53 bp):
TATCAAACTAAAAAAATTCAAATATCAAATTAAACATTAAAACGAAACTCAAA
Found at i:45294805 original size:23 final size:23
Alignment explanation
Indices: 45294779--45294823 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
45294769 AGACATGTAT
*
45294779 CAATTTTTATTTTGTGTATTATC
1 CAATTTTTATTTTGTGAATTATC
* *
45294802 CAATTTTTTTTTTTTGAATTAT
1 CAATTTTTATTTTGTGAATTAT
45294824 GTACTATTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.64
Consensus pattern (23 bp):
CAATTTTTATTTTGTGAATTATC
Found at i:45299580 original size:2 final size:2
Alignment explanation
Indices: 45299575--45299604 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
45299565 CTCTCTCTCT
45299575 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
45299605 TGCACGCACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:45306946 original size:58 final size:61
Alignment explanation
Indices: 45306876--45306992 Score: 204
Period size: 61 Copynumber: 2.0 Consensus size: 61
45306866 TTAGGATTTA
45306876 TAATCTTTGACTTTCC-T-TT-GTATATCTGATTATTAGCATAAATAGGTTGTGTAATGTG
1 TAATCTTTGACTTTCCTTCTTAGTATATCTGATTATTAGCATAAATAGGTTGTGTAATGTG
*
45306934 TAATCTTTGACTTTCCTTCTTAGTATATCTGATTATTAGTATAAATAGGTTGTGTAATG
1 TAATCTTTGACTTTCCTTCTTAGTATATCTGATTATTAGCATAAATAGGTTGTGTAATG
45306993 GAGTGTATAC
Statistics
Matches: 55, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
58 16 0.29
59 1 0.02
60 2 0.04
61 36 0.65
ACGTcount: A:0.26, C:0.10, G:0.16, T:0.47
Consensus pattern (61 bp):
TAATCTTTGACTTTCCTTCTTAGTATATCTGATTATTAGCATAAATAGGTTGTGTAATGTG
Found at i:45311510 original size:90 final size:90
Alignment explanation
Indices: 45311357--45311538 Score: 337
Period size: 90 Copynumber: 2.0 Consensus size: 90
45311347 CCCGCGTGGA
45311357 TGCATGTTTGGCCATCAGTATGGGATATGATCCTTAAAGGATTCTTCAAATATACAGAAAAACTT
1 TGCATGTTTGGCCATCAGTATGGGATATGATCCTTAAAGGATTCTTCAAATATACAGAAAAACTT
*
45311422 AGATAAAACTGAATATTTCCTTATC
66 AGAGAAAACTGAATATTTCCTTATC
* *
45311447 TGCATGTTTGGCCATCGGTATGGGATATGCTCCTTAAAGGATTCTTCAAATATACAGAAAAACTT
1 TGCATGTTTGGCCATCAGTATGGGATATGATCCTTAAAGGATTCTTCAAATATACAGAAAAACTT
45311512 AGAGAAAACTGAATATTTCCTTATC
66 AGAGAAAACTGAATATTTCCTTATC
45311537 TG
1 TG
45311539 ACACAAATTC
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
90 89 1.00
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.33
Consensus pattern (90 bp):
TGCATGTTTGGCCATCAGTATGGGATATGATCCTTAAAGGATTCTTCAAATATACAGAAAAACTT
AGAGAAAACTGAATATTTCCTTATC
Done.