Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 138 of 145
Found at i:45891972 original size:12 final size:12
Alignment explanation
Indices: 45891926--45891974 Score: 55
Period size: 12 Copynumber: 4.2 Consensus size: 12
45891916 AATATTGTAA
*
45891926 TAATAATAATAA
1 TAATAATAATAT
*
45891938 TAAT-ATAATAA
1 TAATAATAATAT
*
45891949 TATTAATAATAT
1 TAATAATAATAT
*
45891961 TAATAATCATAT
1 TAATAATAATAT
45891973 TA
1 TA
45891975 TAGTGATGAT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
11 10 0.31
12 22 0.69
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (12 bp):
TAATAATAATAT
Found at i:45895319 original size:45 final size:45
Alignment explanation
Indices: 45895075--45896119 Score: 538
Period size: 45 Copynumber: 22.7 Consensus size: 45
45895065 TCGTTTTAAC
* * ** *
45895075 CCACTGCAACTTTAGGG-GTATAAGAATTG-TCGCTTTAATTTGCT
1 CCACTGCAACTTCAGGGAG-ATAAGATTTGCTATCTTTAATCTGCT
* * * *
45895119 CCACT-CAACTTCAAGGAGATAA-ATTTAG-TAGCTTCAATCTCCT
1 CCACTGCAACTTCAGGGAGATAAGATTT-GCTATCTTTAATCTGCT
* * * *
45895162 TCACTGCAACTTCAGGGAAATAAGATTCGC-ATCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCT
* * * * * * *
45895206 CCATTGCAAATTGAAGGAGATAAAATTTGTAACTTGTAGCTTTAATCTGTT
1 CCACTGCAACTTCAGGGAGATAAGATTTG---C---TATCTTTAATCTGCT
* * * *
45895257 CCCCTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCT
* * *
45895302 CCACTGTAACTTCAGGGAGATAAGATTTGTAACTCGTAGCTTTAATCTGTT
1 CCACTGCAACTTCAGGGAGATAAGATTTG-----C-TATCTTTAATCTGCT
* * * *
45895353 CCACTACAACTTCAGGGAGATAAGATTCGCTATCTTTAATATGCC
1 CCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCT
* * *
45895398 CCACTGTAACTTCAGGGAAATAAGATTTGCTATCTTTAATTTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCT
* * *
45895443 CAACTGTAACTTCAGGGAGATAAGATTTGTCACTCATAGCTTTAATCTGTT
1 CCACTGCAACTTCAGGGAGATAAGATTTG---CT-AT--CTTTAATCTGCT
* * ** * *
45895494 CCACTGCAACTTTAAGGAGATAAGATTCACTATCTTCAATCTACT
1 CCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCT
* * * * *
45895539 CCACGGTAACTTTAGGGAGATAAGATTTGTAACTCGTAGCTTTAATCTGTT
1 CCACTGCAACTTCAGGGAGATAAGATTTG-----C-TATCTTTAATCTGCT
* * * *
45895590 CCACTGCAACTTTAGGGAAATAAGATCTGCTCCA-CTGTAA-CT--T
1 CCACTGCAACTTCAGGGAGATAAGATTTGCT--ATCTTTAATCTGCT
* * * ** ** * **
45895633 -TA-GGGAGA--T-A---AGATTTGTAACT-CGTAACTTTAATCTATT
1 CCACTGCA-ACTTCAGGGAGATAAG-ATTTGC-TATCTTTAATCTGCT
* * * * * *
45895672 CCACTGCAACTTCAAGGAAATAAGATTAGC-ATCTTCATTCTACT
1 CCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCT
* * * * * *
45895716 CCACTGTAACTTGAGGGAGATAAGATTTGAAACTTGTAGCTTCAATATGTT
1 CCACTGCAACTTCAGGGAGATAAGATTTG---C---TATCTTTAATCTGCT
* *
45895767 CCACTACAACTTCAGAGGA-ATAAGATTTGCTATCTTCAATCTGCT
1 CCACTGCAACTTCAG-GGAGATAAGATTTGCTATCTTTAATCTGCT
** *
45895812 CCACTGCAACTTCAGGGAGATAAGATTCACTATCTTCAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCT
* ** * *
45895857 CCACTGCAACTTTAGGGAGATAAGATTCACTATCTTCAATATGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCT
* * * ** * * *
45895902 CTACTGCAACTTTAGAGAGATAAGATTCACTATCTTCAATTTTCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCT
* * *
45895947 CCACTGCAACTTCAGGGAGATAAGATTTGTAACTTGTAGCTTTAATTTGTT
1 CCACTGCAACTTCAGGGAGATAAGATTTG---C---TATCTTTAATCTGCT
* * * * *
45895998 ACACTGCAACTTTAGGGAAATAAGATTT--T-TGGTTTCAATCTGAT
1 CCACTGCAACTTCAGGGAGATAAGATTTGCTAT-CTTT-AATCTGCT
* * * *
45896042 CTACTGCAACTTTAGAGAGATAAGATTTG-TCATCTTTAATATGCT
1 CCACTGCAACTTCAGGGAGATAAGATTTGCT-ATCTTTAATCTGCT
* *
45896087 CCACTGCAACTTCAAGGAGATAAGACTTGCTAT
1 CCACTGCAACTTCAGGGAGATAAGATTTGCTAT
45896120 GGTAAATTTA
Statistics
Matches: 777, Mismatches: 155, Indels: 137
0.73 0.14 0.13
Matches are distributed among these distances:
35 1 0.00
36 10 0.01
37 6 0.01
39 2 0.00
40 3 0.00
41 4 0.01
42 6 0.01
43 35 0.05
44 122 0.16
45 345 0.44
46 16 0.02
47 6 0.01
48 7 0.01
49 2 0.00
50 2 0.00
51 207 0.27
52 3 0.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.33
Consensus pattern (45 bp):
CCACTGCAACTTCAGGGAGATAAGATTTGCTATCTTTAATCTGCT
Found at i:45895335 original size:96 final size:96
Alignment explanation
Indices: 45895146--45895426 Score: 377
Period size: 96 Copynumber: 2.9 Consensus size: 96
45895136 GATAAATTTA
* *
45895146 GTAGCTTCAATCTCCTT-CACTGCAACTTCAGGGAAATAAGATTCGC-ATCTTCAATCTGCTCCA
1 GTAGCTTTAATCT-GTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCTCCA
* * * * * * *
45895209 TTGCAAATTGAAGGAGATAAAATTTGTAACTT
65 CTGTAACTTCAGGGAGATAAGATTTGTAACTC
* * *
45895241 GTAGCTTTAATCTGTTCCCCTGCAACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCAC
1 GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCTCCAC
45895306 TGTAACTTCAGGGAGATAAGATTTGTAACTC
66 TGTAACTTCAGGGAGATAAGATTTGTAACTC
* * * * *
45895337 GTAGCTTTAATCTGTTCCACTACAACTTCAGGGAGATAAGATTCGCTATCTTTAATATGCCCCAC
1 GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCTCCAC
*
45895402 TGTAACTTCAGGGAAATAAGATTTG
66 TGTAACTTCAGGGAGATAAGATTTG
45895427 CTATCTTTAA
Statistics
Matches: 163, Mismatches: 21, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
94 2 0.01
95 38 0.23
96 123 0.75
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.33
Consensus pattern (96 bp):
GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAATCTGCTCCAC
TGTAACTTCAGGGAGATAAGATTTGTAACTC
Found at i:45895431 original size:141 final size:141
Alignment explanation
Indices: 45895264--45895567 Score: 464
Period size: 141 Copynumber: 2.2 Consensus size: 141
45895254 GTTCCCCTGC
*
45895264 AACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGCTCCACTGTAACTTCAGGGAGATAAGATT
1 AACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGCTCAACTGTAACTTCAGGGAGATAAGATT
* * * *
45895329 TGTAACTCGTAGCTTTAATCTGTTCCACTACAACTTCAGGGAGATAAGATTCGCTATCTTTAATA
66 TGTAACTCATAGCTTTAATCTGTTCCACTACAACTTCAAGGAGATAAGATTCACTATCTTCAATA
* *
45895394 TGCCCCACTGT
131 TACCCCACGGT
* * *
45895405 AACTTCAGGGAAATAAGATTTGCTATCTTTAATTTGCTCAACTGTAACTTCAGGGAGATAAGATT
1 AACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGCTCAACTGTAACTTCAGGGAGATAAGATT
* * * *
45895470 TGTCACTCATAGCTTTAATCTGTTCCACTGCAACTTTAAGGAGATAAGATTCACTATCTTCAATC
66 TGTAACTCATAGCTTTAATCTGTTCCACTACAACTTCAAGGAGATAAGATTCACTATCTTCAATA
*
45895535 TACTCCACGGT
131 TACCCCACGGT
*
45895546 AACTTTAGGGAGATAAGATTTG
1 AACTTTAGGGAAATAAGATTTG
45895568 TAACTCGTAG
Statistics
Matches: 146, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
141 146 1.00
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (141 bp):
AACTTTAGGGAAATAAGATTTGCTATCTTCAATCTGCTCAACTGTAACTTCAGGGAGATAAGATT
TGTAACTCATAGCTTTAATCTGTTCCACTACAACTTCAAGGAGATAAGATTCACTATCTTCAATA
TACCCCACGGT
Found at i:45895486 original size:96 final size:96
Alignment explanation
Indices: 45895345--45895928 Score: 513
Period size: 96 Copynumber: 6.4 Consensus size: 96
45895335 TCGTAGCTTT
* ** * * **
45895345 AATCTGTTCCACTACAACTTCAGGGAGATAAGATTCG---CT-AT--CTTTAATATGCCCCACTG
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAACTCATAGCTTTAATCTGTTCCACTG
* * *
45895404 TAACTTCAGGGAAATAAGATTTGCTATCTTT
66 CAACTTCAGGGAAATAAGATTCGCTATCTTC
* * *
45895435 AATTTGCTCAACTGTAACTTCAGGGAGATAAGATTTGTCACTCATAGCTTTAATCTGTTCCACTG
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAACTCATAGCTTTAATCTGTTCCACTG
* * * *
45895500 CAACTTTAAGGAGATAAGATTCACTATCTTC
66 CAACTTCAGGGAAATAAGATTCGCTATCTTC
* * * *
45895531 AATCTACTCCACGGTAACTTTAGGGAGATAAGATTTGTAACTCGTAGCTTTAATCTGTTCCACTG
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAACTCATAGCTTTAATCTGTTCCACTG
*
45895596 CAACTTTAGGGAAAT-A-A---G--------
66 CAACTTCAGGGAAATAAGATTCGCTATCTTC
* * * *
45895614 -ATCTGCTCCACTGTAACTTTAGGGAGATAAGATTTGTAACTCGTAACTTTAATCTATTCCACTG
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAACTCATAGCTTTAATCTGTTCCACTG
* *
45895678 CAACTTCAAGGAAATAAGATTAGC-ATCTTC
66 CAACTTCAGGGAAATAAGATTCGCTATCTTC
* * * * ** * * *
45895708 ATTCTACTCCACTGTAACTTGAGGGAGATAAGATTTGAAACTTGTAGCTTCAATATGTTCCACTA
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAACTCATAGCTTTAATCTGTTCCACTG
*
45895773 CAACTTCAGAGG-AATAAGATTTGCTATCTTC
66 CAACTTCAG-GGAAATAAGATTCGCTATCTTC
* * * *
45895804 AATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-TCACT-AT--CTTCAATCTGCTCCACTG
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAACTCATAGCTTTAATCTGTTCCACTG
* * *
45895863 CAACTTTAGGGAGATAAGATTCACTATCTTC
66 CAACTTCAGGGAAATAAGATTCGCTATCTTC
* * * * *
45895894 AATATGCTCTACTGCAACTTTAGAGAGATAAGATT
1 AATCTGCTCCACTGTAACTTCAGGGAGATAAGATT
45895929 CACTATCTTC
Statistics
Matches: 408, Mismatches: 62, Indels: 46
0.79 0.12 0.09
Matches are distributed among these distances:
82 73 0.18
83 1 0.00
84 1 0.00
87 1 0.00
89 2 0.00
90 99 0.24
92 1 0.00
93 5 0.01
94 4 0.01
95 74 0.18
96 147 0.36
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (96 bp):
AATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAACTCATAGCTTTAATCTGTTCCACTG
CAACTTCAGGGAAATAAGATTCGCTATCTTC
Found at i:45895491 original size:237 final size:236
Alignment explanation
Indices: 45895163--45895615 Score: 672
Period size: 237 Copynumber: 1.9 Consensus size: 236
45895153 CAATCTCCTT
* * *
45895163 CACTGCAACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCCATTGCAAATTGAAGGAGATA
1 CACTGCAACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCAACTGCAAATTCAAGGAGATA
** * * **
45895228 AAATTTGTAACTTGTAGCTTTAATCTGTTCCCCTGCAACTTTAGGGAAATAAGATTTGCTATCTT
66 AAATTTGTAACTCATAGCTTTAATCTGTTCCACTGCAACTTTAAGGAAATAAGATTCACTATCTT
* *
45895293 CAATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGTAACTCGTAGCTTTAATCTGTTCCACT
131 CAATCTACTCCACGGTAACTTCAGGGAGATAAGATTTGTAACTCGTAGCTTTAATCTGTTCCACT
*
45895358 ACAACTTCAGGGAGATAAGATTCGCTATCTTTAATATGCCC
196 ACAACTTCAGGGAAATAAGATTCGCTATCTTTAATATGCCC
* * * * * * *
45895399 CACTGTAACTTCAGGGAAATAAGATTTGCTATCTTTAATTTGCTCAACTGTAACTTCAGGGAGAT
1 CACTGCAACTTCAGGGAAATAAGATTCGC-ATCTTCAATCTGCTCAACTGCAAATTCAAGGAGAT
* * *
45895464 AAGATTTGTCACTCATAGCTTTAATCTGTTCCACTGCAACTTTAAGGAGATAAGATTCACTATCT
65 AAAATTTGTAACTCATAGCTTTAATCTGTTCCACTGCAACTTTAAGGAAATAAGATTCACTATCT
*
45895529 TCAATCTACTCCACGGTAACTTTAGGGAGATAAGATTTGTAACTCGTAGCTTTAATCTGTTCCAC
130 TCAATCTACTCCACGGTAACTTCAGGGAGATAAGATTTGTAACTCGTAGCTTTAATCTGTTCCAC
* *
45895594 TGCAACTTTAGGGAAATAAGAT
195 TACAACTTCAGGGAAATAAGAT
45895616 CTGCTCCACT
Statistics
Matches: 191, Mismatches: 25, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
236 27 0.14
237 164 0.86
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (236 bp):
CACTGCAACTTCAGGGAAATAAGATTCGCATCTTCAATCTGCTCAACTGCAAATTCAAGGAGATA
AAATTTGTAACTCATAGCTTTAATCTGTTCCACTGCAACTTTAAGGAAATAAGATTCACTATCTT
CAATCTACTCCACGGTAACTTCAGGGAGATAAGATTTGTAACTCGTAGCTTTAATCTGTTCCACT
ACAACTTCAGGGAAATAAGATTCGCTATCTTTAATATGCCC
Found at i:45895618 original size:31 final size:31
Alignment explanation
Indices: 45895583--45895646 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
45895573 CGTAGCTTTA
*
45895583 ATCTGTTCCACTGCAACTTTAGGGAAATAAG
1 ATCTGCTCCACTGCAACTTTAGGGAAATAAG
* *
45895614 ATCTGCTCCACTGTAACTTTAGGGAGATAAG
1 ATCTGCTCCACTGCAACTTTAGGGAAATAAG
45895645 AT
1 AT
45895647 TTGTAACTCG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30
Consensus pattern (31 bp):
ATCTGCTCCACTGCAACTTTAGGGAAATAAG
Found at i:45895662 original size:30 final size:31
Alignment explanation
Indices: 45895583--45895664 Score: 87
Period size: 31 Copynumber: 2.7 Consensus size: 31
45895573 CGTAGCTTTA
* * *
45895583 ATCTGTTCCACTGCAACTTTAGGGAAATAAG
1 ATCTGCTCAACTGTAACTTTAGGGAAATAAG
* *
45895614 ATCTGCTCCACTGTAACTTTAGGGAGATAAG
1 ATCTGCTCAACTGTAACTTTAGGGAAATAAG
*
45895645 ATTTG-T-AACTCGTAACTTTA
1 ATCTGCTCAACT-GTAACTTTA
45895665 ATCTATTCCA
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
29 3 0.07
30 10 0.22
31 32 0.71
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (31 bp):
ATCTGCTCAACTGTAACTTTAGGGAAATAAG
Found at i:45895674 original size:82 final size:82
Alignment explanation
Indices: 45895532--45895697 Score: 278
Period size: 82 Copynumber: 2.0 Consensus size: 82
45895522 ACTATCTTCA
* *
45895532 ATCTACTCCACGGTAACTTTAGGGAGATAAGATTTGTAACTCGTAGCTTTAATCTGTTCCACTGC
1 ATCTACTCCACGGTAACTTTAGGGAGATAAGATTTGTAACTCGTAACTTTAATCTATTCCACTGC
* *
45895597 AACTTTAGGGAAATAAG
66 AACTTCAAGGAAATAAG
* *
45895614 ATCTGCTCCACTGTAACTTTAGGGAGATAAGATTTGTAACTCGTAACTTTAATCTATTCCACTGC
1 ATCTACTCCACGGTAACTTTAGGGAGATAAGATTTGTAACTCGTAACTTTAATCTATTCCACTGC
45895679 AACTTCAAGGAAATAAG
66 AACTTCAAGGAAATAAG
45895696 AT
1 AT
45895698 TAGCATCTTC
Statistics
Matches: 78, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 78 1.00
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32
Consensus pattern (82 bp):
ATCTACTCCACGGTAACTTTAGGGAGATAAGATTTGTAACTCGTAACTTTAATCTATTCCACTGC
AACTTCAAGGAAATAAG
Found at i:45895789 original size:95 final size:96
Alignment explanation
Indices: 45895614--45895838 Score: 301
Period size: 95 Copynumber: 2.4 Consensus size: 96
45895604 GGGAAATAAG
* * * * * *
45895614 ATCTGCTCCACTGTAACTTTAGGGAGATAAGATTTGTAACTCGTAACTTTAATCTATTCCACTGC
1 ATCTACTCCACTGTAACTTCAGGGAGATAAGATTTGAAACTCGTAACTTCAATATATTCCACTAC
45895679 AACTTCAAGGAAATAAGATTAGC-ATCTTCA
66 AACTTCAAGGAAATAAGATTAGCTATCTTCA
* * * * *
45895709 TTCTACTCCACTGTAACTTGAGGGAGATAAGATTTGAAACTTGTAGCTTCAATATGTTCCACTAC
1 ATCTACTCCACTGTAACTTCAGGGAGATAAGATTTGAAACTCGTAACTTCAATATATTCCACTAC
*
45895774 AACTTCAGAGG-AATAAGATTTGCTATCTTCA
66 AACTTCA-AGGAAATAAGATTAGCTATCTTCA
* *
45895805 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
1 ATCTACTCCACTGTAACTTCAGGGAGATAAGATT
45895839 CACTATCTTC
Statistics
Matches: 113, Mismatches: 15, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
95 73 0.65
96 40 0.35
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (96 bp):
ATCTACTCCACTGTAACTTCAGGGAGATAAGATTTGAAACTCGTAACTTCAATATATTCCACTAC
AACTTCAAGGAAATAAGATTAGCTATCTTCA
Found at i:45896260 original size:51 final size:51
Alignment explanation
Indices: 45896180--45896305 Score: 180
Period size: 51 Copynumber: 2.5 Consensus size: 51
45896170 TTCAATATGC
* * ** * *
45896180 TCCACTGTAACTTCAAGGAGATAAGATTTGTAACTTTTAGCTTTATTCTAT
1 TCCACTGTAACTTCAGGGAGATAAAATTTGTAACTTGCAGCTTTAGTATAT
*
45896231 TCCACCGTAACTTCAGGGAGATAAAATTTGTAACTTGCAGCTTTAGTATAT
1 TCCACTGTAACTTCAGGGAGATAAAATTTGTAACTTGCAGCTTTAGTATAT
*
45896282 TCCACTGCAACTTCAGGGAGATAA
1 TCCACTGTAACTTCAGGGAGATAA
45896306 GACTTGCAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (51 bp):
TCCACTGTAACTTCAGGGAGATAAAATTTGTAACTTGCAGCTTTAGTATAT
Found at i:45896441 original size:196 final size:196
Alignment explanation
Indices: 45896086--45896443 Score: 572
Period size: 196 Copynumber: 1.8 Consensus size: 196
45896076 TTTAATATGC
*
45896086 TCCACTGCAACTTCAAGGAGATAAGACTTGCTATGGTAAATTTAATCCGACCTACTGCAACTTCA
1 TCCACTGCAACTTCAAGGAGATAAGACTTGCAATGGTAAATTTAATCCGACCTACTGCAACTTCA
* * **
45896151 GAGGTATAGGACTTATTGTTTCAATATGCTCCACTGTAACTTCAAGGAGATAAGATTTGTAACTT
66 GAGCTATAGGACTTATTGTTTCAATATACTCCACTACAACTTCAAGGAGATAAGATTTGTAACTT
* * **
45896216 TTAGCTTTATTCTATTCCACCGTAACTTCAGGGAGATAAAATTTGTAACTTGCAGCTTTAGTATA
131 GTAGCTTTAGTCTATTCCACCACAACTTCAGGGAGATAAAATTTGTAACTTGCAGCTTTAGTATA
45896281 T
196 T
* * *
45896282 TCCACTGCAACTTCAGGGAGATAAGACTTGCAATGGTAGATTTAATCTGACCTACTGCAACTTCA
1 TCCACTGCAACTTCAAGGAGATAAGACTTGCAATGGTAAATTTAATCCGACCTACTGCAACTTCA
* * *
45896347 GAGCTATAGGACTTATTGTTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATTTGTAGCTT
66 GAGCTATAGGACTTATTGTTTCAATATACTCCACTACAACTTCAAGGAGATAAGATTTGTAACTT
*
45896412 GTAGCTTTAGTCTATTCCACTACAACTTCAGG
131 GTAGCTTTAGTCTATTCCACCACAACTTCAGG
45896444 AATCTGACCC
Statistics
Matches: 146, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
196 146 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (196 bp):
TCCACTGCAACTTCAAGGAGATAAGACTTGCAATGGTAAATTTAATCCGACCTACTGCAACTTCA
GAGCTATAGGACTTATTGTTTCAATATACTCCACTACAACTTCAAGGAGATAAGATTTGTAACTT
GTAGCTTTAGTCTATTCCACCACAACTTCAGGGAGATAAAATTTGTAACTTGCAGCTTTAGTATA
T
Found at i:45896536 original size:119 final size:119
Alignment explanation
Indices: 45896325--45896562 Score: 370
Period size: 119 Copynumber: 2.0 Consensus size: 119
45896315 TGGTAGATTT
* * *
45896325 AATCTGACCTACTGCAACTTCAGAGCTATAGGACTTATTGTTTCAATCTACTCCACTACAACTTC
1 AATCTGACCCACTGCAACTTCAGAGCTATAGGACTTATCGCTTCAATCTACTCCACTACAACTTC
*
45896390 AGGGAGATAAGATTTGTAGCTTGTAGCTTTAGTCTATTCCACTACAACTTCAGG
66 AGGGAGATAAGATTTGTAACTTGTAGCTTTAGTCTATTCCACTACAACTTCAGG
* * *
45896444 AATCTGACCCACTGCAACTTCAGA-CGTATAGGACTTGTCGCTTCAATCTGCTCCACTGCAACTT
1 AATCTGACCCACTGCAACTTCAGAGC-TATAGGACTTATCGCTTCAATCTACTCCACTACAACTT
* **
45896508 TAGGGAGATAAGATTTGTAACTTGTAGCTTTAGTCTATTCCACTGTAACTTCAGG
65 CAGGGAGATAAGATTTGTAACTTGTAGCTTTAGTCTATTCCACTACAACTTCAGG
45896563 GAGATAAGAC
Statistics
Matches: 108, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
118 1 0.01
119 107 0.99
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.32
Consensus pattern (119 bp):
AATCTGACCCACTGCAACTTCAGAGCTATAGGACTTATCGCTTCAATCTACTCCACTACAACTTC
AGGGAGATAAGATTTGTAACTTGTAGCTTTAGTCTATTCCACTACAACTTCAGG
Found at i:45896609 original size:50 final size:51
Alignment explanation
Indices: 45896496--45896611 Score: 128
Period size: 51 Copynumber: 2.3 Consensus size: 51
45896486 TCAATCTGCT
* * * * * * *
45896496 CCACTGCAACTTTAGGGAGATAAGATTTGTAACTTGTAGCTTTAGTCTATT
1 CCACTGCAACTTCAGGGAGATAAGACTTGTAACTGGTAGATTTAATCGATC
* *
45896547 CCACTGTAACTTCAGGGAGATAAGACTTGTTA-TGGTAGATTTAATCCGA-C
1 CCACTGCAACTTCAGGGAGATAAGACTTGTAACTGGTAGATTTAAT-CGATC
45896597 CCACTGCAACTTCAG
1 CCACTGCAACTTCAG
45896612 AGGTATAGGA
Statistics
Matches: 54, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
50 24 0.44
51 30 0.56
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (51 bp):
CCACTGCAACTTCAGGGAGATAAGACTTGTAACTGGTAGATTTAATCGATC
Found at i:45903197 original size:12 final size:12
Alignment explanation
Indices: 45903168--45903205 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
45903158 AGGAATACTG
45903168 TAATAATAATA-
1 TAATAATAATAT
45903179 TATATAATAATAT
1 TA-ATAATAATAT
*
45903192 TAATAATCATAT
1 TAATAATAATAT
45903204 TA
1 TA
45903206 TAGTGAGGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
11 2 0.08
12 20 0.83
13 2 0.08
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (12 bp):
TAATAATAATAT
Found at i:45916884 original size:22 final size:24
Alignment explanation
Indices: 45916858--45916912 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
45916848 TTTATAAATT
45916858 TAATTTAA-AAAATATAAT-ACAA
1 TAATTTAAGAAAATATAATAACAA
* * *
45916880 TAATTTCAAGCATATTTAATAACAA
1 TAATTT-AAGAAAATATAATAACAA
45916905 TAATTTAA
1 TAATTTAA
45916913 TCATAAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 6 0.22
23 2 0.07
24 9 0.33
25 10 0.37
ACGTcount: A:0.55, C:0.07, G:0.02, T:0.36
Consensus pattern (24 bp):
TAATTTAAGAAAATATAATAACAA
Found at i:45919176 original size:876 final size:877
Alignment explanation
Indices: 45917621--45919375 Score: 3397
Period size: 876 Copynumber: 2.0 Consensus size: 877
45917611 CACACGATTA
* **
45917621 TCTTTAATGGTTAATTATTTATTTATTTTGGTGAGTTTATCTAAATGTATTTTAGTTTATTAATT
1 TCTTTAATGGTTAATTAATTATTTATTTTAATGAGTTTATCTAAATGTATTTTAGTTTATTAATT
*
45917686 TGAGTATAGTGATTCAATGTAATAATATTTTTTTATAACTTTTAATACAACTATAAGCTGTAACT
66 TGAGTATAGTGATTCAATG--ATAATATTTTTTTATAACTTTTAATACAACTATAAGATGTAACT
* *
45917751 TAAAAATATATATAATTATAAAGATAATTATCATCAATTATTTGCTAATATGTTATTTTGTTGTT
129 TAAAAATATATATAATTATAAAGATAATTATCATCAATTACTTACTAATATGTTATTTTGTTGTT
45917816 CATTATTTACCATTAATTTTTTTCATAATTTAATAGTGTTTTCTATTTAAATATTTTCTTAAAAT
194 CATTATTTACCATTAATTTTTTTCATAATTTAATAGTGTTTTCTATTTAAATATTTTCTTAAAAT
45917881 ATTTATTATAATATGCTTTTTGGAAAGTTATCTTATAGAATATGTTTTTTTACCTCGACGCCGAT
259 ATTTATTATAATATGCTTTTTGGAAAGTTATCTTATAGAATATGTTTTTTTACCTCGACGCCGAT
45917946 AGATGTCGAGTTTAGTGATGTTTATTGTACCACTAAATTTTTGTGTCATTGGAATTAGAGTAAGT
324 AGATGTCGAGTTTAGTGATGTTTATTGTACCACTAAATTTTTGTGTCATTGGAATTAGAGTAAGT
45918011 AATTTGAAATTATTACAACACATTAACATCCAGAATCTTAAACCGTAATAATATAATTTAATTTT
389 AATTTGAAATTATTACAACACATTAACATCCAGAATCTTAAACCGTAATAATATAATTTAATTTT
45918076 CTAATAGCTTTGGTTAATATTTAAACAAAGCTCGAGATTTATGGATGTTGAAATTTTTGTAAAAT
454 CTAATAGCTTTGGTTAATATTTAAACAAAGCTCGAGATTTATGGATGTTGAAATTTTTGTAAAAT
45918141 TTAAAAAAAAAAAACATATGTAGTAATTTGTAACCGTTAATTAAAAGGGAGACATAAAAAATAAT
519 TTAAAAAAAAAAAACATATGTAGTAATTTGTAACCGTTAATTAAAAGGGAGACATAAAAAATAAT
45918206 TGATCTCGTCGCTCATGAGGATATTTAAAAAAATACTAATAAAACTCTAATTTTAAAACCTATAA
584 TGATCTCGTCGCTCATGAGGATATTTAAAAAAATACTAATAAAACTCTAATTTTAAAACCTATAA
45918271 ATATGCCATTCAACTTATTAATTTAAGAAAATGCAAAATAGTGGTGACGTTGAGGGATTAGATAT
649 ATATGCCATTCAACTTATTAATTTAAGAAAATGCAAAATAGTGGTGACGTTGAGGGATTAGATAT
45918336 TTATAATTTATATTCATATTTTATTATTTAATTTTTTATTTTACATTTCGTTAATTAAATGAATT
714 TTATAATTTATATTCATATTTTATTATTTAATTTTTTATTTTACATTTCGTTAATTAAATGAATT
45918401 AAATAAGATAATATATAAATTTTTTTCCTCTTGATTTTCAGTTTTTTCCTTCTAAAAAAATTCAA
779 AAATAAGATAATATATAAATTTTTTTCCTCTTGATTTTCAGTTTTTTCCTTCTAAAAAAATTCAA
45918466 ATCCAACTAAAAATGCTAGAAATCTGATAGAGAT
844 ATCCAACTAAAAATGCTAGAAATCTGATAGAGAT
45918500 TCTTTAATGGTTAATTAATTATTTATTTTAATGAGTTTATCTAAATGTATTTTAGTTTATTAATT
1 TCTTTAATGGTTAATTAATTATTTATTTTAATGAGTTTATCTAAATGTATTTTAGTTTATTAATT
*
45918565 TGAGTTTAGTGATTCAATG-TAAT-TTTTTTTATAACTTTTAATACAACTATAAGATGTAACTTA
66 TGAGTATAGTGATTCAATGATAATATTTTTTTATAACTTTTAATACAACTATAAGATGTAACTT-
*
45918628 AAAAATATATATAATTATAAATATAATTATCATCAATTACTTACTAATATGTTATTTTGTTGTTC
130 AAAAATATATATAATTATAAAGATAATTATCATCAATTACTTACTAATATGTTATTTTGTTGTTC
45918693 ATTATTTACCATTAATTTTTTTCATAATTTAATAGTGTTTTCTATTTAAATATTTTCTTAAAATA
195 ATTATTTACCATTAATTTTTTTCATAATTTAATAGTGTTTTCTATTTAAATATTTTCTTAAAATA
45918758 TTTATTATAATATGCTTTTTGGAAAGTTATCTTATAGAATATGTTTTTTTACCTCGACGCCGATA
260 TTTATTATAATATGCTTTTTGGAAAGTTATCTTATAGAATATGTTTTTTTACCTCGACGCCGATA
45918823 GATGTCGAGTTTAGTGATGTTTATTGTACCACTAAATTTTTGTGTCATTGGAATTAGAGTAAGTA
325 GATGTCGAGTTTAGTGATGTTTATTGTACCACTAAATTTTTGTGTCATTGGAATTAGAGTAAGTA
45918888 ATTTGAAATTATTACAACACATTAACATCCAGAATCTTAAACCGTAATAATATAATTTAATTTTC
390 ATTTGAAATTATTACAACACATTAACATCCAGAATCTTAAACCGTAATAATATAATTTAATTTTC
45918953 TAATAGCTTTGGTTAATATTTAAACAAAGCTCGAGATTTATGGATGTTGAAATTTTTGTAAAATT
455 TAATAGCTTTGGTTAATATTTAAACAAAGCTCGAGATTTATGGATGTTGAAATTTTTGTAAAATT
45919018 TAAAAAAAAAAAACATATGTAGTAATTTGTAACCGTTAATTAAAAGGGAGACATAAAAAATAATT
520 TAAAAAAAAAAAACATATGTAGTAATTTGTAACCGTTAATTAAAAGGGAGACATAAAAAATAATT
45919083 GATCTCGTCGCTCATGAGGATATTTAAAAAAATACTAATAAAACTCTAATTTTAAAACCTATAAA
585 GATCTCGTCGCTCATGAGGATATTTAAAAAAATACTAATAAAACTCTAATTTTAAAACCTATAAA
45919148 TATGCCATTCAACTTATTAATTTAAGAAAATGCAAAATAGTGGTGACGTTGAGGGATTAGATATT
650 TATGCCATTCAACTTATTAATTTAAGAAAATGCAAAATAGTGGTGACGTTGAGGGATTAGATATT
45919213 TATAATTTATATTCATATTTTATTATTTAATTTTTTATTTTACATTTCGTTAATTAAATGAATTA
715 TATAATTTATATTCATATTTTATTATTTAATTTTTTATTTTACATTTCGTTAATTAAATGAATTA
45919278 AATAAGATAATATATAAATTTTTTTCCTCTTGATTTTCAGTTTTTTCCTTCTAAAAAAATTCAAA
780 AATAAGATAATATATAAATTTTTTTCCTCTTGATTTTCAGTTTTTTCCTTCTAAAAAAATTCAAA
45919343 TCCAACTAAAAATGCTAGAAATCTGATAGAGAT
845 TCCAACTAAAAATGCTAGAAATCTGATAGAGAT
45919376 GATGTGAAAT
Statistics
Matches: 867, Mismatches: 8, Indels: 5
0.99 0.01 0.01
Matches are distributed among these distances:
875 38 0.04
876 749 0.86
879 80 0.09
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.43
Consensus pattern (877 bp):
TCTTTAATGGTTAATTAATTATTTATTTTAATGAGTTTATCTAAATGTATTTTAGTTTATTAATT
TGAGTATAGTGATTCAATGATAATATTTTTTTATAACTTTTAATACAACTATAAGATGTAACTTA
AAAATATATATAATTATAAAGATAATTATCATCAATTACTTACTAATATGTTATTTTGTTGTTCA
TTATTTACCATTAATTTTTTTCATAATTTAATAGTGTTTTCTATTTAAATATTTTCTTAAAATAT
TTATTATAATATGCTTTTTGGAAAGTTATCTTATAGAATATGTTTTTTTACCTCGACGCCGATAG
ATGTCGAGTTTAGTGATGTTTATTGTACCACTAAATTTTTGTGTCATTGGAATTAGAGTAAGTAA
TTTGAAATTATTACAACACATTAACATCCAGAATCTTAAACCGTAATAATATAATTTAATTTTCT
AATAGCTTTGGTTAATATTTAAACAAAGCTCGAGATTTATGGATGTTGAAATTTTTGTAAAATTT
AAAAAAAAAAAACATATGTAGTAATTTGTAACCGTTAATTAAAAGGGAGACATAAAAAATAATTG
ATCTCGTCGCTCATGAGGATATTTAAAAAAATACTAATAAAACTCTAATTTTAAAACCTATAAAT
ATGCCATTCAACTTATTAATTTAAGAAAATGCAAAATAGTGGTGACGTTGAGGGATTAGATATTT
ATAATTTATATTCATATTTTATTATTTAATTTTTTATTTTACATTTCGTTAATTAAATGAATTAA
ATAAGATAATATATAAATTTTTTTCCTCTTGATTTTCAGTTTTTTCCTTCTAAAAAAATTCAAAT
CCAACTAAAAATGCTAGAAATCTGATAGAGAT
Found at i:45922047 original size:25 final size:25
Alignment explanation
Indices: 45921996--45922048 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
45921986 ATTTCTCACC
* *
45921996 CAAATTGACATCAACCTAGCCCCAA
1 CAAATTGACATCAACCAAGCCACAA
*
45922021 CAAATTGCACATCAA-CAAGCCATAA
1 CAAATTG-ACATCAACCAAGCCACAA
45922046 CAA
1 CAA
45922049 GGCATTTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.45, C:0.32, G:0.08, T:0.15
Consensus pattern (25 bp):
CAAATTGACATCAACCAAGCCACAA
Found at i:45927607 original size:50 final size:50
Alignment explanation
Indices: 45927532--45927750 Score: 357
Period size: 50 Copynumber: 4.3 Consensus size: 50
45927522 GCATATGATT
* * *
45927532 ACTTATCACTTTTCACGGATCAGATAAGTGTAGCTGGGCTACCACTTATC
1 ACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGAGCTACCACTTATC
*
45927582 ACTTATCACTTGTCACTAATCAGATAAGTGTAGCTGAAGCTACCACTTATC
1 ACTTATCACTTGTCACTGATCAGATAAGTGTAGCTG-AGCTACCACTTATC
*
45927633 ACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGGGCTACCACTTATC
1 ACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGAGCTACCACTTATC
*
45927683 ACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATC
1 ACTTATCACTTGTCACTGATCAGATAAGTGTAGCT-GAGCTACCACTTATC
*
45927734 ACTTATCACTTATCACT
1 ACTTATCACTTGTCACT
45927751 TGTCACTTGT
Statistics
Matches: 158, Mismatches: 9, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
50 81 0.51
51 77 0.49
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (50 bp):
ACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGAGCTACCACTTATC
Found at i:45927662 original size:101 final size:101
Alignment explanation
Indices: 45927532--45927750 Score: 393
Period size: 101 Copynumber: 2.2 Consensus size: 101
45927522 GCATATGATT
* *
45927532 ACTTATCACTTTTCACGGATCAGATAAGTGTAGCTGGGCTACCACTTATCACTTATCACTTGTCA
1 ACTTATCACTTATCACTGATCAGATAAGTGTAGCTGGGCTACCACTTATCACTTATCACTTGTCA
*
45927597 CTAATCAGATAAGTGTAGCTGAAGCTACCACTTATC
66 CTAATCAGATAAGTGTAGCTAAAGCTACCACTTATC
*
45927633 ACTTATCACTTGTCACTGATCAGATAAGTGTAGCTGGGCTACCACTTATCACTTATCACTTGTCA
1 ACTTATCACTTATCACTGATCAGATAAGTGTAGCTGGGCTACCACTTATCACTTATCACTTGTCA
*
45927698 CTGATCAGATAAGTGTAGCTAAAGCTACCACTTATC
66 CTAATCAGATAAGTGTAGCTAAAGCTACCACTTATC
45927734 ACTTATCACTTATCACT
1 ACTTATCACTTATCACT
45927751 TGTCACTTGT
Statistics
Matches: 113, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
101 113 1.00
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (101 bp):
ACTTATCACTTATCACTGATCAGATAAGTGTAGCTGGGCTACCACTTATCACTTATCACTTGTCA
CTAATCAGATAAGTGTAGCTAAAGCTACCACTTATC
Found at i:45927738 original size:7 final size:7
Alignment explanation
Indices: 45927726--45927769 Score: 61
Period size: 7 Copynumber: 6.3 Consensus size: 7
45927716 CTAAAGCTAC
45927726 CACTTAT
1 CACTTAT
45927733 CACTTAT
1 CACTTAT
45927740 CACTTAT
1 CACTTAT
*
45927747 CACTTGT
1 CACTTAT
*
45927754 CACTTGT
1 CACTTAT
*
45927761 CACTGAT
1 CACTTAT
45927768 CA
1 CA
45927770 GATAAATGTA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.25, C:0.30, G:0.07, T:0.39
Consensus pattern (7 bp):
CACTTAT
Found at i:45927794 original size:51 final size:51
Alignment explanation
Indices: 45927737--45927852 Score: 178
Period size: 51 Copynumber: 2.3 Consensus size: 51
45927727 ACTTATCACT
* *
45927737 TATCACTTATCACTTGTCACTTGTCACTGATCAGATAAATGTAGTTAAAGC
1 TATCACTTATCACTTGCCACTTGTCACTGATCAGATAAATGTAGCTAAAGC
* * * *
45927788 TGTCACTTATCACTTGCCACTTTTCACTGATTAGATAAGTGTAGCTAAAGC
1 TATCACTTATCACTTGCCACTTGTCACTGATCAGATAAATGTAGCTAAAGC
45927839 TATCACTTATCACT
1 TATCACTTATCACT
45927853 ATCACTGATC
Statistics
Matches: 58, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.36
Consensus pattern (51 bp):
TATCACTTATCACTTGCCACTTGTCACTGATCAGATAAATGTAGCTAAAGC
Found at i:45927809 original size:65 final size:65
Alignment explanation
Indices: 45927672--45927815 Score: 216
Period size: 65 Copynumber: 2.2 Consensus size: 65
45927662 GTAGCTGGGC
*
45927672 TACCACTTATCACTTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACT
1 TACCACTTATCACTTATCACTTGTCACTGATCAGATAAATGTAGCTAAAGCTACCACTTATCACT
* * * **
45927737 TATCACTTATCACTTGTCACTTGTCACTGATCAGATAAATGTAGTTAAAGCTGTCACTTATCACT
1 TACCACTTATCACTTATCACTTGTCACTGATCAGATAAATGTAGCTAAAGCTACCACTTATCACT
* *
45927802 TGCCACTTTTCACT
1 TACCACTTATCACT
45927816 GATTAGATAA
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
65 70 1.00
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.35
Consensus pattern (65 bp):
TACCACTTATCACTTATCACTTGTCACTGATCAGATAAATGTAGCTAAAGCTACCACTTATCACT
Found at i:45933415 original size:21 final size:21
Alignment explanation
Indices: 45933387--45933436 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
45933377 TAGAAGCTCG
45933387 AAAGCTGAACAGAAGCTCATA
1 AAAGCTGAACAGAAGCTCATA
* * *
45933408 AGAGCTGAGCAGAAGCTCGTA
1 AAAGCTGAACAGAAGCTCATA
45933429 AAAGCTGA
1 AAAGCTGA
45933437 TCCACCCAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.42, C:0.18, G:0.26, T:0.14
Consensus pattern (21 bp):
AAAGCTGAACAGAAGCTCATA
Found at i:45939383 original size:25 final size:25
Alignment explanation
Indices: 45939349--45939397 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
45939339 TTCAAATCTC
45939349 AAGTATCCTGCAACAACTATACTTT
1 AAGTATCCTGCAACAACTATACTTT
45939374 AAGTATCCTGCAACAACTATACTT
1 AAGTATCCTGCAACAACTATACTT
45939398 AAGATTCATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.31
Consensus pattern (25 bp):
AAGTATCCTGCAACAACTATACTTT
Found at i:45939647 original size:24 final size:24
Alignment explanation
Indices: 45939615--45939662 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
45939605 AAATCTCAAA
45939615 TATCCTGCAACAACTATACTTAAG
1 TATCCTGCAACAACTATACTTAAG
45939639 TATCCTGCAACAACTATACTTAAG
1 TATCCTGCAACAACTATACTTAAG
45939663 ATTCATGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.25, G:0.08, T:0.29
Consensus pattern (24 bp):
TATCCTGCAACAACTATACTTAAG
Found at i:45941308 original size:166 final size:165
Alignment explanation
Indices: 45941014--45941367 Score: 415
Period size: 166 Copynumber: 2.1 Consensus size: 165
45941004 GGATACTGCA
* * * **
45941014 AACCATACTCACCAACATGAACACACAAAGCAAGCACTTGAAACATAAATCAAGATCGGTATTTA
1 AACCATACTCACCTAGATGAACACACAAAGCAAGCACTTGAAACATAAATCAAGAGCCATATTTA
* * ** * *
45941079 AGCTAGCAATCAAAAACAATAATAAGACTTTACTTACTAGTAATAATAATGTCATCATAGGTAAA
66 AACTAGCAATAAAAAACAATAATAAGACTCCACTTACTAGTAATAACAATGTCACCATAGGTAAA
** * * **
45941144 AGTTTAAGCTTTAATA-TAAGTATGCGACTACATTT
131 AGCCTAAGCTTTAATACT-AGTATGCAACCACATCG
* * *
45941179 AACCATACTCACCTAGATGAGCATACAATGCAAGCA-TATGAAACATAAATCAAGAAGCCATATT
1 AACCATACTCACCTAGATGAACACACAAAGCAAGCACT-TGAAACATAAATCAAG-AGCCATATT
* * ** * *
45941243 TAAACTAGTAATAAAAAATAATAATACTACTCCACTTACTAGTAATAGCAATGTTACCATAGGTA
64 TAAACTAGCAATAAAAAACAATAATAAGACTCCACTTACTAGTAATAACAATGTCACCATAGGTA
45941308 AAAGCCTAAGCTTTAATACTAGTATGCAACCACATCG
129 AAAGCCTAAGCTTTAATACTAGTATGCAACCACATCG
* *
45941345 AACCATACACACCTAGACGAACA
1 AACCATACTCACCTAGATGAACA
45941368 TGCATTTTTT
Statistics
Matches: 157, Mismatches: 29, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
164 1 0.01
165 47 0.30
166 108 0.69
167 1 0.01
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.25
Consensus pattern (165 bp):
AACCATACTCACCTAGATGAACACACAAAGCAAGCACTTGAAACATAAATCAAGAGCCATATTTA
AACTAGCAATAAAAAACAATAATAAGACTCCACTTACTAGTAATAACAATGTCACCATAGGTAAA
AGCCTAAGCTTTAATACTAGTATGCAACCACATCG
Found at i:45943424 original size:7 final size:7
Alignment explanation
Indices: 45943412--45943441 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
45943402 ACTAGTCATC
45943412 ACAATCA
1 ACAATCA
45943419 ACAATCA
1 ACAATCA
45943426 ACAATCA
1 ACAATCA
*
45943433 ACTATCA
1 ACAATCA
45943440 AC
1 AC
45943442 CAATTACCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.53, C:0.30, G:0.00, T:0.17
Consensus pattern (7 bp):
ACAATCA
Found at i:45945817 original size:24 final size:25
Alignment explanation
Indices: 45945768--45945821 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
45945758 AATTTTAATA
** *
45945768 ATGTAATTATTTTTTATTTTTTTAT
1 ATGTAATTATTTTTTATTAATCTAT
45945793 ATGTAATTATTTTTTA-TAATCTAT
1 ATGTAATTATTTTTTATTAATCTAT
45945817 ATGTA
1 ATGTA
45945822 TATATTTATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 10 0.38
25 16 0.62
ACGTcount: A:0.30, C:0.02, G:0.06, T:0.63
Consensus pattern (25 bp):
ATGTAATTATTTTTTATTAATCTAT
Found at i:45949323 original size:100 final size:97
Alignment explanation
Indices: 45949132--45949329 Score: 290
Period size: 100 Copynumber: 2.0 Consensus size: 97
45949122 AAAATTCAAG
*
45949132 AGGATATTTGGCTATTTGGTTAAACGAGAAATCCAAACCCAACACATTAGGGCATGTTCCTCGAA
1 AGGATATTTGGCTATTTGGTTAAACGAGAAATCCAAACCCAACACATTAGGGCACGTTCCTCGAA
* *
45949197 TTTCCGAACGCGAAACATTGCCTTATTTTGAA
66 TTTCCAAACGCGAAACATTGCCTTATTTAGAA
* *
45949229 AGGATATTTGGCTATTTGGTTGAACGAGAAAAATCGAAA-CCAAGCACATTAGGGCACGTTTCCT
1 AGGATATTTGGCTATTTGGTTAAACGAG--AAATCCAAACCCAA-CACATTAGGGCACG-TTCCT
* *
45949293 CGAATTTCCAAACGCTAAATATTGCCTTATTTAGAA
62 CGAATTTCCAAACGCGAAACATTGCCTTATTTAGAA
45949329 A
1 A
45949330 AATCCTCATC
Statistics
Matches: 90, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
97 27 0.30
98 4 0.04
99 21 0.23
100 38 0.42
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (97 bp):
AGGATATTTGGCTATTTGGTTAAACGAGAAATCCAAACCCAACACATTAGGGCACGTTCCTCGAA
TTTCCAAACGCGAAACATTGCCTTATTTAGAA
Found at i:45951331 original size:3 final size:3
Alignment explanation
Indices: 45951323--45951356 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
45951313 TGGATCTTAC
45951323 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
45951357 TGAATGGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:45954091 original size:9 final size:8
Alignment explanation
Indices: 45954069--45954093 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
45954059 ATAAACAACA
45954069 ACAAAAAT
1 ACAAAAAT
45954077 ACAAAAAT
1 ACAAAAAT
45954085 ACAAAAAT
1 ACAAAAAT
45954093 A
1 A
45954094 ATTAATATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.12, G:0.00, T:0.12
Consensus pattern (8 bp):
ACAAAAAT
Found at i:45954149 original size:17 final size:18
Alignment explanation
Indices: 45954122--45954168 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 18
45954112 ATAAGTAAAT
*
45954122 AAACATGAAAAGAA-AAA
1 AAACATAAAAAGAAGAAA
*
45954139 AAACATAAAAATAAGAAA
1 AAACATAAAAAGAAGAAA
*
45954157 AATAAATAAAAA
1 AA-ACATAAAAA
45954169 TATATGTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 12 0.48
18 5 0.20
19 8 0.32
ACGTcount: A:0.79, C:0.04, G:0.06, T:0.11
Consensus pattern (18 bp):
AAACATAAAAAGAAGAAA
Found at i:45954165 original size:19 final size:20
Alignment explanation
Indices: 45954131--45954170 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
45954121 TAAACATGAA
45954131 AAGAAAAAAAACATAAAAAT
1 AAGAAAAAAAACATAAAAAT
*
45954151 AAGAAAAATAA-ATAAAAAT
1 AAGAAAAAAAACATAAAAAT
45954170 A
1 A
45954171 TATGTATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.80, C:0.03, G:0.05, T:0.12
Consensus pattern (20 bp):
AAGAAAAAAAACATAAAAAT
Found at i:45954195 original size:3 final size:3
Alignment explanation
Indices: 45954189--45954323 Score: 119
Period size: 3 Copynumber: 45.3 Consensus size: 3
45954179 TAATAATGGC
* * * * * * *
45954189 AAT AAT AAT ATT AAT AGT ATT AAT AAT AAG AAA AAA AAT AA- AAT AAG
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * ** * **
45954236 AAA AAT AGT AAT AAC ATT AAT AAT AAT TCT AAT AAC AAT GTT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
45954284 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
45954324 NNNNNNNNNN
Statistics
Matches: 104, Mismatches: 27, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
2 2 0.02
3 102 0.98
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:45961283 original size:29 final size:29
Alignment explanation
Indices: 45961241--45961328 Score: 113
Period size: 29 Copynumber: 3.0 Consensus size: 29
45961231 GTGTGGTTTC
* *
45961241 GTGGCCAAACGGGCATGTGCTGCACACGG
1 GTGGCCAAACGGGCATGTGCCGCACACAG
* * *
45961270 GTGGCCACACGGGCGTGTGCCACACACAG
1 GTGGCCAAACGGGCATGTGCCGCACACAG
* *
45961299 GTGGCCAGACGAGCATGTGCCGCACACAG
1 GTGGCCAAACGGGCATGTGCCGCACACAG
45961328 G
1 G
45961329 CGGTTCACAC
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 50 1.00
ACGTcount: A:0.22, C:0.31, G:0.36, T:0.11
Consensus pattern (29 bp):
GTGGCCAAACGGGCATGTGCCGCACACAG
Found at i:45967917 original size:25 final size:25
Alignment explanation
Indices: 45967883--45967931 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
45967873 TTCAAATCTC
45967883 AAGTATCCTGCAACAACTATACTTT
1 AAGTATCCTGCAACAACTATACTTT
45967908 AAGTATCCTGCAACAACTATACTT
1 AAGTATCCTGCAACAACTATACTT
45967932 AAGATTCATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.31
Consensus pattern (25 bp):
AAGTATCCTGCAACAACTATACTTT
Found at i:45969598 original size:166 final size:163
Alignment explanation
Indices: 45969280--45969631 Score: 440
Period size: 166 Copynumber: 2.1 Consensus size: 163
45969270 GGATACTGCA
* * * *
45969280 AACCATACTCACCAACATGAACACACAAAGCAAGCACTTGAAACATAAATCAAGATCAGTATTTA
1 AACCATACTCACCTAGATGAACACACAAAGCAAGCACTAGAAACATAAATCAAGACCAGTATTTA
* *
45969345 AGCTAGCAATCAAAAATAATAATAAGACTACTTACTAGTAATAATAATGTCATCATAGGTAAAAG
66 AGCTAGCAATCAAAAATAATAATAAGACTACTTACCAGTAATAATAATGTCACCATAGGTAAAAG
* * * **
45969410 CTTAAGCTTTAATACAAGTATGCGACTACATTT
131 CCTAAGCTTTAATACAAGTATGCAACCACATCG
* * *
45969443 AACCATACTCACCTAGATGAGCATACAATGCAAGCA-TAAGAAACATAAATCAAGAAGCCA-TAT
1 AACCATACTCACCTAGATGAACACACAAAGCAAGCACT-AGAAACATAAATCAAG-A-CCAGTAT
* * ** *
45969506 TTAAGCTAGTAATGAAAAATAATAATACTACTCCACTTACCAGTAAT-ATCAATGTTACCATAGG
63 TTAAGCTAGCAATCAAAAATAATAATAAGACT--ACTTACCAGTAATAAT-AATGTCACCATAGG
*
45969570 TAAAAGCCTAAGCTTTAATACTAGTATGCAACCACATCG
125 TAAAAGCCTAAGCTTTAATACAAGTATGCAACCACATCG
*
45969609 AACCATACTCACCTAGACGAACA
1 AACCATACTCACCTAGATGAACA
45969632 TGCATTTTTT
Statistics
Matches: 161, Mismatches: 22, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
162 1 0.01
163 46 0.29
164 32 0.20
165 4 0.02
166 78 0.48
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.24
Consensus pattern (163 bp):
AACCATACTCACCTAGATGAACACACAAAGCAAGCACTAGAAACATAAATCAAGACCAGTATTTA
AGCTAGCAATCAAAAATAATAATAAGACTACTTACCAGTAATAATAATGTCACCATAGGTAAAAG
CCTAAGCTTTAATACAAGTATGCAACCACATCG
Found at i:45971976 original size:68 final size:68
Alignment explanation
Indices: 45971895--45972119 Score: 441
Period size: 68 Copynumber: 3.3 Consensus size: 68
45971885 TTGTTGTAAA
45971895 AAATATATATAAAATATAATACAATATGAATATAACATAAAAAATTATTTTTAATTGAATCACTA
1 AAAT-TATATAAAATATAATACAATATGAATATAACATAAAAAATTATTTTTAATTGAATCACTA
45971960 TGAT
65 TGAT
45971964 AAATTATATAAAATATAATACAATATGAATATAACATAAAAAATTATTTTTAATTGAATCACTAT
1 AAATTATATAAAATATAATACAATATGAATATAACATAAAAAATTATTTTTAATTGAATCACTAT
45972029 GAT
66 GAT
45972032 AAATTATATAAAATATAATACAATATGAATATAACATAAAAAATTATTTTTAATTGAATCACTAT
1 AAATTATATAAAATATAATACAATATGAATATAACATAAAAAATTATTTTTAATTGAATCACTAT
45972097 GAT
66 GAT
45972100 AAATTATATAAAATATAATA
1 AAATTATATAAAATATAATA
45972120 TAATGCAGAA
Statistics
Matches: 156, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
68 152 0.97
69 4 0.03
ACGTcount: A:0.54, C:0.05, G:0.04, T:0.36
Consensus pattern (68 bp):
AAATTATATAAAATATAATACAATATGAATATAACATAAAAAATTATTTTTAATTGAATCACTAT
GAT
Found at i:45972803 original size:2 final size:2
Alignment explanation
Indices: 45972796--45972821 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
45972786 TGGTGAAGTT
45972796 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
45972822 AAATTCAGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:45981682 original size:22 final size:22
Alignment explanation
Indices: 45981638--45981691 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
45981628 TATAAAAATT
*
45981638 TAAATTACTTTTATCATTCTAA
1 TAAATTAATTTTATCATTCTAA
* *
45981660 TTAATTAATTTTAATGATT-TAA
1 TAAATTAATTTT-ATCATTCTAA
45981682 TAATATTAAT
1 TAA-ATTAAT
45981692 AATATATTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 15 0.58
23 11 0.42
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.52
Consensus pattern (22 bp):
TAAATTAATTTTATCATTCTAA
Found at i:45983693 original size:12 final size:12
Alignment explanation
Indices: 45983661--45983694 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
45983651 TGACGACGAG
*
45983661 GAAGATGACGAT
1 GAAGATGATGAT
*
45983673 GACGATGATGAT
1 GAAGATGATGAT
45983685 GAAGATGATG
1 GAAGATGATG
45983695 CCGAAGGTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.38, C:0.06, G:0.35, T:0.21
Consensus pattern (12 bp):
GAAGATGATGAT
Found at i:45996383 original size:17 final size:17
Alignment explanation
Indices: 45996334--45996384 Score: 54
Period size: 17 Copynumber: 3.2 Consensus size: 17
45996324 CAAATAATTT
45996334 TTTTTAGATATTTAT-A
1 TTTTTAGATATTTATAA
* * *
45996350 TTTTCA-A-AATCATAA
1 TTTTTAGATATTTATAA
45996365 TTTTTAGATATTTATAA
1 TTTTTAGATATTTATAA
45996382 TTT
1 TTT
45996385 CAAAATAGTA
Statistics
Matches: 26, Mismatches: 6, Indels: 5
0.70 0.16 0.14
Matches are distributed among these distances:
14 4 0.15
15 7 0.27
16 6 0.23
17 9 0.35
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (17 bp):
TTTTTAGATATTTATAA
Found at i:45999379 original size:41 final size:40
Alignment explanation
Indices: 45999329--45999425 Score: 106
Period size: 40 Copynumber: 2.4 Consensus size: 40
45999319 ATATATGAAT
* *
45999329 TTGAGCTATTGATTTTTACTAATAAATTTACATATAAATTGA
1 TTGAACTATTGATTTTTACTAA-AAACTTACATATAAATT-A
* **
45999371 -TGAACTATTGATTTTTGCTAAATGCTTACATATAAATTA
1 TTGAACTATTGATTTTTACTAAAAACTTACATATAAATTA
* *
45999410 TTGAATTGTTGATTTT
1 TTGAACTATTGATTTT
45999426 ATGTATAAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
39 1 0.02
40 27 0.57
41 19 0.40
ACGTcount: A:0.34, C:0.07, G:0.11, T:0.47
Consensus pattern (40 bp):
TTGAACTATTGATTTTTACTAAAAACTTACATATAAATTA
Found at i:45999660 original size:30 final size:30
Alignment explanation
Indices: 45999625--45999685 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
45999615 GCATTAAGCT
45999625 TTTGAATTATCAATTAATTACGATAAACTA
1 TTTGAATTATCAATTAATTACGATAAACTA
45999655 TTTGAATTATCAATTAATTACGATAAACTA
1 TTTGAATTATCAATTAATTACGATAAACTA
45999685 T
1 T
45999686 CTCCTCAATC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.41
Consensus pattern (30 bp):
TTTGAATTATCAATTAATTACGATAAACTA
Found at i:46002821 original size:2 final size:2
Alignment explanation
Indices: 46002805--46002837 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
46002795 TGACCTAGAA
*
46002805 AT AT -T AT AT AA AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46002838 TATGTTTTAC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:46003244 original size:16 final size:16
Alignment explanation
Indices: 46003199--46003234 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
46003189 GGAAGAACAT
*
46003199 GAAAAAAAATAAAAAA
1 GAAAAAAAAGAAAAAA
46003215 GAAAAAAAAGAAAAAA
1 GAAAAAAAAGAAAAAA
46003231 GAAA
1 GAAA
46003235 TTAAAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.86, C:0.00, G:0.11, T:0.03
Consensus pattern (16 bp):
GAAAAAAAAGAAAAAA
Found at i:46005296 original size:29 final size:32
Alignment explanation
Indices: 46005264--46005333 Score: 74
Period size: 35 Copynumber: 2.2 Consensus size: 32
46005254 TATCAATGAG
46005264 AAATTTATT-T-ATG-AATTTTTATTAATATT
1 AAATTTATTATAATGAAATTTTTATTAATATT
*
46005293 AAATTAATTACTGAAATGAAATTTTTATTAATATT
1 AAATTTATTA-T--AATGAAATTTTTATTAATATT
*
46005328 TAATTT
1 AAATTT
46005334 TGAATTCCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
29 8 0.25
31 1 0.03
34 3 0.09
35 20 0.62
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.53
Consensus pattern (32 bp):
AAATTTATTATAATGAAATTTTTATTAATATT
Found at i:46007650 original size:108 final size:108
Alignment explanation
Indices: 46007461--46007670 Score: 375
Period size: 108 Copynumber: 1.9 Consensus size: 108
46007451 CCTACACAAA
* * * *
46007461 TATTAGGAAGAGATTAGAGTCAAGTTGATGACTTTTGCTGGGTTATGAATCTAGGTCTCCCTTGC
1 TATTAGGAAGAGATCAGAGTCAAGTTGATGACTTTTGCTGAGTTATGAATCTAGATCTCCCTTAC
*
46007526 TCTCTTGAAGCCATATTTTCATAAGGAAAATATGAAACAAAAG
66 TCTCTTGAAGACATATTTTCATAAGGAAAATATGAAACAAAAG
46007569 TATTAGGAAGAGATCAGAGTCAAGTTGATGACTTTTGCTGAGTTATGAATCTAGATCTCCCTTAC
1 TATTAGGAAGAGATCAGAGTCAAGTTGATGACTTTTGCTGAGTTATGAATCTAGATCTCCCTTAC
46007634 TCTCTTGAAGACATATTTTCATAAGGAAAATATGAAA
66 TCTCTTGAAGACATATTTTCATAAGGAAAATATGAAA
46007671 ATGGAGCAAG
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
108 97 1.00
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33
Consensus pattern (108 bp):
TATTAGGAAGAGATCAGAGTCAAGTTGATGACTTTTGCTGAGTTATGAATCTAGATCTCCCTTAC
TCTCTTGAAGACATATTTTCATAAGGAAAATATGAAACAAAAG
Found at i:46008783 original size:118 final size:119
Alignment explanation
Indices: 46008565--46008803 Score: 437
Period size: 118 Copynumber: 2.0 Consensus size: 119
46008555 AATTTCGATG
46008565 ATTCAATCGTCGCCGTTGACAAAGCTAGTGAATATGTTTCTATGGGAGAGCCCGACGTTTCGTTT
1 ATTCAATCGTC-CCGTTGACAAAGCTAGTGAATATGTTTCTATGGGAGAGCCCGACGTTTCGTTT
*
46008630 TTCAGTTGCGACAGCGAAGATGATAAAACCAGTGCTGATTATTACTTCGATTCTT
65 TTCAGTTGCGACAGCGAAGATGATAAAAACAGTGCTGATTATTACTTCGATTCTT
46008685 ATTCAATCGT-CCGTTGACAAAGCTAGTGAATATGTTTCTATGGGAGAGCCCGACGTTTCGTTTT
1 ATTCAATCGTCCCGTTGACAAAGCTAGTGAATATGTTTCTATGGGAGAGCCCGACGTTTCGTTTT
46008749 TCAGTTGCGACAGCGAAGATGATAAAAA-ACGTGCTGATTATTACTTCGATTCTT
66 TCAGTTGCGACAGCGAAGATGATAAAAACA-GTGCTGATTATTACTTCGATTCTT
46008803 A
1 A
46008804 CTCTCATTTC
Statistics
Matches: 117, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
117 1 0.01
118 106 0.91
120 10 0.09
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (119 bp):
ATTCAATCGTCCCGTTGACAAAGCTAGTGAATATGTTTCTATGGGAGAGCCCGACGTTTCGTTTT
TCAGTTGCGACAGCGAAGATGATAAAAACAGTGCTGATTATTACTTCGATTCTT
Found at i:46012312 original size:18 final size:17
Alignment explanation
Indices: 46012284--46012318 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
46012274 NNTATTAAGA
*
46012284 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
46012301 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
46012319 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:46012565 original size:45 final size:44
Alignment explanation
Indices: 46012465--46012574 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
46012455 TTTTCCCTTA
46012465 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * ***
46012504 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
46012549 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
46012575 CCTTTATTCC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 25 0.43
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:46012574 original size:16 final size:16
Alignment explanation
Indices: 46012553--46012606 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
46012543 TTGATTTGCT
46012553 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
46012569 ATTACACCTTTATTCC
1 ATTACACCTCTATTCC
*
46012585 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
*
46012601 AATACA
1 ATTACA
46012607 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.31, C:0.33, G:0.00, T:0.35
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:46012912 original size:156 final size:156
Alignment explanation
Indices: 46012628--46012939 Score: 624
Period size: 156 Copynumber: 2.0 Consensus size: 156
46012618 GTGCCCTTAT
46012628 GGTTGACTCTTAAGTCTATACCAAATCAATTTTAAATAAATTTTCATGTTTTTTTATAGGGTTTA
1 GGTTGACTCTTAAGTCTATACCAAATCAATTTTAAATAAATTTTCATGTTTTTTTATAGGGTTTA
46012693 TTTAGATAAAGAAGAATGAAGGAAAGTGGGAGGAATGATGGAAAGGAACCTCTAATAATTGTTCT
66 TTTAGATAAAGAAGAATGAAGGAAAGTGGGAGGAATGATGGAAAGGAACCTCTAATAATTGTTCT
46012758 AGAGCAGGAATATTTAATTAAAAGTA
131 AGAGCAGGAATATTTAATTAAAAGTA
46012784 GGTTGACTCTTAAGTCTATACCAAATCAATTTTAAATAAATTTTCATGTTTTTTTATAGGGTTTA
1 GGTTGACTCTTAAGTCTATACCAAATCAATTTTAAATAAATTTTCATGTTTTTTTATAGGGTTTA
46012849 TTTAGATAAAGAAGAATGAAGGAAAGTGGGAGGAATGATGGAAAGGAACCTCTAATAATTGTTCT
66 TTTAGATAAAGAAGAATGAAGGAAAGTGGGAGGAATGATGGAAAGGAACCTCTAATAATTGTTCT
46012914 AGAGCAGGAATATTTAATTAAAAGTA
131 AGAGCAGGAATATTTAATTAAAAGTA
46012940 AAAATATCGT
Statistics
Matches: 156, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
156 156 1.00
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.34
Consensus pattern (156 bp):
GGTTGACTCTTAAGTCTATACCAAATCAATTTTAAATAAATTTTCATGTTTTTTTATAGGGTTTA
TTTAGATAAAGAAGAATGAAGGAAAGTGGGAGGAATGATGGAAAGGAACCTCTAATAATTGTTCT
AGAGCAGGAATATTTAATTAAAAGTA
Found at i:46016479 original size:14 final size:14
Alignment explanation
Indices: 46016461--46016503 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 14
46016451 AGTATATATA
46016461 AAAAAGTAAAAAAAC
1 AAAAA-TAAAAAAAC
46016476 AAAAATAAAAAAAAC
1 AAAAAT-AAAAAAAC
46016491 AAAAATAAAAAAA
1 AAAAATAAAAAAA
46016504 ATAAAACATA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 8 0.30
15 19 0.70
ACGTcount: A:0.86, C:0.05, G:0.02, T:0.07
Consensus pattern (14 bp):
AAAAATAAAAAAAC
Found at i:46016487 original size:16 final size:15
Alignment explanation
Indices: 46016468--46016509 Score: 75
Period size: 15 Copynumber: 2.8 Consensus size: 15
46016458 ATAAAAAAGT
46016468 AAAAAAACAAAAATA
1 AAAAAAACAAAAATA
46016483 AAAAAAACAAAAATA
1 AAAAAAACAAAAATA
*
46016498 AAAAAAATAAAA
1 AAAAAAACAAAA
46016510 CATATGTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.88, C:0.05, G:0.00, T:0.07
Consensus pattern (15 bp):
AAAAAAACAAAAATA
Found at i:46016494 original size:20 final size:20
Alignment explanation
Indices: 46016470--46016511 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
46016460 AAAAAAGTAA
* *
46016470 AAAAACAAAAATAAAAAAAAC
1 AAAAATAAAAA-AAATAAAAC
46016491 AAAAATAAAAAAAATAAAAC
1 AAAAATAAAAAAAATAAAAC
46016511 A
1 A
46016512 TATGTATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.86, C:0.07, G:0.00, T:0.07
Consensus pattern (20 bp):
AAAAATAAAAAAAATAAAAC
Found at i:46016509 original size:14 final size:13
Alignment explanation
Indices: 46016460--46016509 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 13
46016450 AAGTATATAT
*
46016460 AAAAAAGTAAAAA
1 AAAAAAATAAAAA
46016473 AACAAAAATAAAAAA
1 AA-AAAAAT-AAAAA
46016488 AACAAAAATAAAAA
1 AA-AAAAATAAAAA
46016502 AAATAAAA
1 AAA-AAAA
46016510 CATATGTATA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
13 3 0.09
14 16 0.48
15 14 0.42
ACGTcount: A:0.86, C:0.04, G:0.02, T:0.08
Consensus pattern (13 bp):
AAAAAAATAAAAA
Found at i:46018333 original size:39 final size:41
Alignment explanation
Indices: 46018245--46018330 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 41
46018235 ACCTACTATA
*
46018245 TTTGATCTACTTCACGCCAATACATGAAGATAAGATCTGTTTTC
1 TTTGATCTACTTCACGCCAATACATGAAGATAAGA--T-TTTGC
*
46018289 TTTGATCTACTTCACGCCCATACATGAAGATAAGA-TTTGC
1 TTTGATCTACTTCACGCCAATACATGAAGATAAGATTTTGC
46018329 TT
1 TT
46018331 GATTCGATCT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
40 6 0.15
44 34 0.85
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (41 bp):
TTTGATCTACTTCACGCCAATACATGAAGATAAGATTTTGC
Found at i:46018369 original size:45 final size:44
Alignment explanation
Indices: 46018270--46019041 Score: 493
Period size: 45 Copynumber: 17.3 Consensus size: 44
46018260 GCCAATACAT
* * * ***
46018270 GAAGATAAGATCTGTTTTCTTTGATCTACTTCACGC-CCA-TACAT
1 GAAGACAAGATCTG-CTTCTTCGATCTACTTCAC-CACCAGTATGG
* * * *
46018314 GAAGATAAGATTTGCTTGATTCGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGCTT-CTTCGATCTACTTCACCACCAGTATGG
* ** * ***
46018359 GAAGACAAGATCTGCCATT-TTCGTTCTACTTCA-TGCCAATACAT
1 GAAGACAAGATCTG-C-TTCTTCGATCTACTTCACCACCAGTATGG
* * *
46018403 GAAGACAAGATTTGCTTTCTTCAATCT-GTTCCACCACCAGTATGG
1 GAAGACAAGATCTGC-TTCTTCGATCTACTT-CACCACCAGTATGG
* * * * * * * * *
46018448 GGAGATAAGATCTGCTACCTACGATCCACTTCGCTACCAATATAG
1 GAAGACAAGATCTGCT-TCTTCGATCTACTTCACCACCAGTATGG
* * * * *
46018493 GAAGATAGGATTTACTTTCTTCGATCTACTTTACCACCAGTATGG
1 GAAGACAAGATCTGC-TTCTTCGATCTACTTCACCACCAGTATGG
* * *
46018538 GAAGACAAGATCTGTTATCTTTGATCTACTCCACCACCAGTATGG
1 GAAGACAAGATCTGCT-TCTTCGATCTACTTCACCACCAGTATGG
* * * * * * * * * *
46018583 GGAGATAAGATCTGTTATCTACGATCCACTCCGCTACCAATATAG
1 GAAGACAAGATCTGCT-TCTTCGATCTACTTCACCACCAGTATGG
*
46018628 GAAGACATGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGG
1 GAAGACAAGATCTGC-TTCTTCGATCTACTTCACCACCAGTATGG
* * * * ***
46018673 GAAGACAAAATCTGCTATCTTTGATGTACTTCA-CACCAATACAT
1 GAAGACAAGATCTGCT-TCTTCGATCTACTTCACCACCAGTATGG
* *
46018717 GAAGACAAGATCTACTTTCTTCGATCTACTCCACCACCAGTATGG
1 GAAGACAAGATCTGC-TTCTTCGATCTACTTCACCACCAGTATGG
* * * * * ***
46018762 GGAGACAAGATCTGGTATCTTTGATCTACTTCA-CGCCAATACAT
1 GAAGACAAGATCTGCT-TCTTCGATCTACTTCACCACCAGTATGG
* * *
46018806 GAGGACAAGATCTGTTTTCTTCGATCTACTCCACCACCAGTATGG
1 GAAGACAAGATCTG-CTTCTTCGATCTACTTCACCACCAGTATGG
* * * * ***
46018851 GGAGACAAGATCTGGTATCTTCGATCTACTTCA-CGCCAATACAT
1 GAAGACAAGATCTGCT-TCTTCGATCTACTTCACCACCAGTATGG
* * *
46018895 GAAGACAAGATTTGTTTTCTTCGATCTAC-TCTACCACTAGTATGG
1 GAAGACAAGATCTG-CTTCTTCGATCTACTTC-ACCACCAGTATGG
* * * * * ***
46018940 GGAGACAAAATCTGGTATCTTCGATCTACTTCA-CGCCAATACAT
1 GAAGACAAGATCTGCT-TCTTCGATCTACTTCACCACCAGTATGG
* *
46018984 GAAGACAAGATCTGCTTTCTTAGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGC-TTCTTCGATCTACTTCACCACCAGTATGG
46019029 GAAGACAAGATCT
1 GAAGACAAGATCT
46019042 TTTGTATTCA
Statistics
Matches: 545, Mismatches: 156, Indels: 53
0.72 0.21 0.07
Matches are distributed among these distances:
43 10 0.02
44 188 0.34
45 338 0.62
46 7 0.01
47 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTCTTCGATCTACTTCACCACCAGTATGG
Found at i:46018387 original size:89 final size:89
Alignment explanation
Indices: 46018292--46018551 Score: 288
Period size: 89 Copynumber: 2.9 Consensus size: 89
46018282 TGTTTTCTTT
* ** *
46018292 GATCTACTTCACGCCCATACATGAAGATAAGATTTGCTTGATTCGATCTACTTCGCCACCAGTAT
1 GATCTACTTCACGCCAATACATGAAGATAAGATTTGCTTTCTTCGATCTACTTCACCACCAGTAT
** *
46018357 GGGAAGACAAGATCTGCCATTTTC
66 GGGAAGACAAGATCTGCCACCTAC
* * * * *
46018381 GTTCTACTTCATGCCAATACATGAAGACAAGATTTGCTTTCTTCAATCT-GTTCCACCACCAGTA
1 GATCTACTTCACGCCAATACATGAAGATAAGATTTGCTTTCTTCGATCTACTT-CACCACCAGTA
* * *
46018445 TGGGGAGATAAGATCTGCTACCTAC
65 TGGGAAGACAAGATCTGCCACCTAC
* * * * * * * *
46018470 GATCCACTTCGCTACCAATATAGGAAGATAGGATTTACTTTCTTCGATCTACTTTACCACCAGTA
1 GATCTACTTCAC-GCCAATACATGAAGATAAGATTTGCTTTCTTCGATCTACTTCACCACCAGTA
46018535 TGGGAAGACAAGATCTG
65 TGGGAAGACAAGATCTG
46018552 TTATCTTTGA
Statistics
Matches: 138, Mismatches: 30, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
88 2 0.01
89 79 0.57
90 55 0.40
91 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (89 bp):
GATCTACTTCACGCCAATACATGAAGATAAGATTTGCTTTCTTCGATCTACTTCACCACCAGTAT
GGGAAGACAAGATCTGCCACCTAC
Found at i:46018744 original size:89 final size:89
Alignment explanation
Indices: 46018538--46019041 Score: 704
Period size: 89 Copynumber: 5.7 Consensus size: 89
46018528 ACCAGTATGG
* * *
46018538 GAAGACAAGATCTG-TTATCTTTGATCTACTCCACCACCAGTATGGGGAGATAAGATCTGTTATC
1 GAAGACAAGATCTGCTT-TCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGGTATC
* * * * * * *
46018602 TACGATCCACTCCGCTACCAATATAG
65 TTCGATCTACTTCAC-GCCAATACAT
* * * * *
46018628 GAAGACATGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAAATCTGCTATCT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGGTATCT
* * *
46018693 TTGATGTACTTCACACCAATACAT
66 TCGATCTACTTCACGCCAATACAT
*
46018717 GAAGACAAGATCTACTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGGTATCT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGGTATCT
*
46018782 TTGATCTACTTCACGCCAATACAT
66 TCGATCTACTTCACGCCAATACAT
* *
46018806 GAGGACAAGATCTGTTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGGTATCT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGGTATCT
46018871 TCGATCTACTTCACGCCAATACAT
66 TCGATCTACTTCACGCCAATACAT
* * * * *
46018895 GAAGACAAGATTTGTTTTCTTCGATCTACTCTACCACTAGTATGGGGAGACAAAATCTGGTATCT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGGTATCT
46018960 TCGATCTACTTCACGCCAATACAT
66 TCGATCTACTTCACGCCAATACAT
* * * *
46018984 GAAGACAAGATCTGCTTTCTTAGATCTACTTCGCCACCAGTATGGGAAGACAAGATCT
1 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCT
46019042 TTTGTATTCA
Statistics
Matches: 372, Mismatches: 41, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
89 307 0.83
90 63 0.17
91 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (89 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTCCACCACCAGTATGGGGAGACAAGATCTGGTATCT
TCGATCTACTTCACGCCAATACAT
Found at i:46020962 original size:17 final size:17
Alignment explanation
Indices: 46020936--46020971 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
46020926 TTATATGATG
*
46020936 AAATGCCATGCAGTCAA
1 AAATGCCATGCAGCCAA
*
46020953 AAATGTCATGCAGCCAA
1 AAATGCCATGCAGCCAA
46020970 AA
1 AA
46020972 CAAAACACAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.44, C:0.22, G:0.17, T:0.17
Consensus pattern (17 bp):
AAATGCCATGCAGCCAA
Found at i:46024851 original size:18 final size:19
Alignment explanation
Indices: 46024817--46024860 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
46024807 ATTTTTATAG
*
46024817 AAAGA-AAAGGGAGAAATA
1 AAAGAGAAAGGGAAAAATA
*
46024835 AAAGAGAAA-GGAAAAATT
1 AAAGAGAAAGGGAAAAATA
46024853 AAAGAGAA
1 AAAGAGAA
46024861 TAGAGGAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 20 0.87
19 3 0.13
ACGTcount: A:0.68, C:0.00, G:0.25, T:0.07
Consensus pattern (19 bp):
AAAGAGAAAGGGAAAAATA
Found at i:46026387 original size:18 final size:19
Alignment explanation
Indices: 46026353--46026396 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
46026343 ATTTTTATAG
*
46026353 AAAGA-AAAGGGAGAAATA
1 AAAGAGAAAGGGAAAAATA
*
46026371 AAAGAGAAA-GGAAAAATT
1 AAAGAGAAAGGGAAAAATA
46026389 AAAGAGAA
1 AAAGAGAA
46026397 TAGAGGAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 20 0.87
19 3 0.13
ACGTcount: A:0.68, C:0.00, G:0.25, T:0.07
Consensus pattern (19 bp):
AAAGAGAAAGGGAAAAATA
Found at i:46031510 original size:17 final size:17
Alignment explanation
Indices: 46031490--46031536 Score: 69
Period size: 17 Copynumber: 2.7 Consensus size: 17
46031480 TATATTAGTT
46031490 TTTATT-TTATTTATTCA
1 TTTATTATTATTTATT-A
46031507 TTTATTATTATTTATTA
1 TTTATTATTATTTATTA
46031524 TTTATTACTTATT
1 TTTATTA-TTATT
46031537 ACTTTAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 14 0.50
18 14 0.50
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTATTATTATTTATTA
Found at i:46033041 original size:245 final size:247
Alignment explanation
Indices: 46032567--46033128 Score: 889
Period size: 245 Copynumber: 2.3 Consensus size: 247
46032557 AGGTTTTGAC
* *
46032567 ATGAATAATGGAGCAAGAGAGAAACTAGATTCTAAGCCAATTAAAATGCATAGATAAGATATATT
1 ATGAATAATGGAGCAAGAGAGAAACTAGATTCTAAGCCAATTAAAATGCATATATAAGAGATATT
* *
46032632 AGCTTGGTTCGTTTAAACAATCACTTTAAATATGAATCAACTTAAAGTTTCAACATCTGCAACAC
66 AGCTTGGTTCGTGTAAACAATCACCTTAAATATGAATCAACTTAAAGTTT----ATCTGCAACAC
* *
46032697 CTTCTCGTACTTATATAAAAATATTAGGAATATGAGATGAGAGTCAAGTTGATCACTTATGTTGG
127 CTTCCCGTACGTATATAAAAATATTAGGAATATGAGATGAGAGTCAAGTTGATCACTTATGTTGG
*
46032762 GTTACGAATCTAGTCTTTCCCTTACTCTCTTGAAGACATATTTTCACAAGGAAAAT
192 GTTACGAATCTAGTCTCTCCCTTACTCTCTTGAAGACATATTTTCACAAGGAAAAT
* *
46032818 ATGAATCATGGAGCAAGAGAGAAACTAGATTCTAAGCCAATTAAAATGCACATATAAGAGATATT
1 ATGAATAATGGAGCAAGAGAGAAACTAGATTCTAAGCCAATTAAAATGCATATATAAGAGATATT
*
46032883 AGCTTGGTTCGTGTAAGCAATCACCTTAAATATGAATCAACTTAAAG-TT-TCTGCAACACCTTC
66 AGCTTGGTTCGTGTAAACAATCACCTTAAATATGAATCAACTTAAAGTTTATCTGCAACACCTTC
*
46032946 CCGTATCCGT-T-TAAAAATATTGGGAATATGAGATGAGAGTCAAGTTGATCACTTATGTTGGGT
131 CCGTA--CGTATATAAAAATATTAGGAATATGAGATGAGAGTCAAGTTGATCACTTATGTTGGGT
* *
46033009 TATGAATCTAGTCTCTCTCTTACTCTCTTGAAGACATATTTTCACAAGGAAAAT
194 TACGAATCTAGTCTCTCCCTTACTCTCTTGAAGACATATTTTCACAAGGAAAAT
* * *
46033063 ATGAATAATGGAGCAAGAGAGAAACCAGATTCATAAGCCAATTAAAGTGCATATATAAGAGCTAT
1 ATGAATAATGGAGCAAGAGAGAAACTAGATTC-TAAGCCAATTAAAATGCATATATAAGAGATAT
46033128 T
65 T
46033129 GAACTTAGAT
Statistics
Matches: 290, Mismatches: 18, Indels: 11
0.91 0.06 0.03
Matches are distributed among these distances:
245 150 0.52
246 31 0.11
247 2 0.01
250 2 0.01
251 105 0.36
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.30
Consensus pattern (247 bp):
ATGAATAATGGAGCAAGAGAGAAACTAGATTCTAAGCCAATTAAAATGCATATATAAGAGATATT
AGCTTGGTTCGTGTAAACAATCACCTTAAATATGAATCAACTTAAAGTTTATCTGCAACACCTTC
CCGTACGTATATAAAAATATTAGGAATATGAGATGAGAGTCAAGTTGATCACTTATGTTGGGTTA
CGAATCTAGTCTCTCCCTTACTCTCTTGAAGACATATTTTCACAAGGAAAAT
Found at i:46034150 original size:339 final size:340
Alignment explanation
Indices: 46033521--46034201 Score: 1355
Period size: 339 Copynumber: 2.0 Consensus size: 340
46033511 AATATAAATA
46033521 TTAAGATATTTTTATTTTTAATAATAAAATAAAGTTTTAAACTTTGAACAATCAATTTAGACGTT
1 TTAAGATATTTTTATTTTTAATAATAAAATAAAGTTTTAAACTTTGAACAATCAATTTAGACGTT
46033586 ATATTATTAAAAAGATCAAATAAAATCAAAATTTAACTGTGCTAATATTTATTATTTTAAAAAAT
66 ATATTATTAAAAAGATCAAATAAAATCAAAATTTAACTGTGCTAATATTTATTATTTTAAAAAAT
46033651 ATATGAAAATTCTTTTATTCATTTGTAGTTCAACTTTAAATAAAAGATTTCATTTGTATCATAAA
131 ATATGAAAATTCTTTTATTCATTTGTAGTTCAACTTTAAATAAAAGATTTCATTTGTATCATAAA
46033716 AAGGTTATTAAAATATTAACTTTGTTAAAAGGTTAACGTGATTTTTTAAATAGTAATGTTAGCCC
196 AAGGTTATTAAAATATTAACTTTGTTAAAAGGTTAACGTGATTTTTTAAATAGTAATGTTAGCCC
46033781 ACTTAAAATTTAGCTTCATTCATTGAAAAGGAGGGACCGATTTGATGAGATTTTTATAATAGAGG
261 ACTTAAAATTTAGCTTCATTCATTGAAAAGGAGGGACCGATTTGATGAGATTTTTATAATAGAGG
46033846 GACCTATTACTGACT
326 GACCTATTACTGACT
46033861 TTAAGATA-TTTTATTTTTAATAATAAAATAAAGTTTTAAACTTTGAACAATCAATTTAGACGTT
1 TTAAGATATTTTTATTTTTAATAATAAAATAAAGTTTTAAACTTTGAACAATCAATTTAGACGTT
46033925 ATATTATTAAAAAGATCAAATAAAATCAAAATTTAACTGTGCTAATATTTATTATTTTAAAAAAT
66 ATATTATTAAAAAGATCAAATAAAATCAAAATTTAACTGTGCTAATATTTATTATTTTAAAAAAT
46033990 ATATGAAAATTCTTTTATTCATTTGTAGTTCAACTTTAAATAAAAGATTTCATTTGTATCATAAA
131 ATATGAAAATTCTTTTATTCATTTGTAGTTCAACTTTAAATAAAAGATTTCATTTGTATCATAAA
46034055 AAGGTTATTAAAATATTAACTTTGTTAAAAGGTTAACGTGATTTTTTAAATAGTAATGTTAGCCC
196 AAGGTTATTAAAATATTAACTTTGTTAAAAGGTTAACGTGATTTTTTAAATAGTAATGTTAGCCC
46034120 ACTTAAAATTTAGCTTCATTCATTGAAAAGGAGGGACCGATTTGATGAGATTTTTATAATAGAGG
261 ACTTAAAATTTAGCTTCATTCATTGAAAAGGAGGGACCGATTTGATGAGATTTTTATAATAGAGG
46034185 GACCTATTACTGACT
326 GACCTATTACTGACT
46034200 TT
1 TT
46034202 CACTGTTATT
Statistics
Matches: 341, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
339 333 0.98
340 8 0.02
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (340 bp):
TTAAGATATTTTTATTTTTAATAATAAAATAAAGTTTTAAACTTTGAACAATCAATTTAGACGTT
ATATTATTAAAAAGATCAAATAAAATCAAAATTTAACTGTGCTAATATTTATTATTTTAAAAAAT
ATATGAAAATTCTTTTATTCATTTGTAGTTCAACTTTAAATAAAAGATTTCATTTGTATCATAAA
AAGGTTATTAAAATATTAACTTTGTTAAAAGGTTAACGTGATTTTTTAAATAGTAATGTTAGCCC
ACTTAAAATTTAGCTTCATTCATTGAAAAGGAGGGACCGATTTGATGAGATTTTTATAATAGAGG
GACCTATTACTGACT
Found at i:46035455 original size:29 final size:32
Alignment explanation
Indices: 46035423--46035492 Score: 74
Period size: 35 Copynumber: 2.2 Consensus size: 32
46035413 TATCAATGAG
46035423 AAATTTATT-T-ATG-AATTTTTATTAATATT
1 AAATTTATTATAATGAAATTTTTATTAATATT
*
46035452 AAATTAATTACTGAAATGAAATTTTTATTAATATT
1 AAATTTATTA-T--AATGAAATTTTTATTAATATT
*
46035487 TAATTT
1 AAATTT
46035493 TGAATTCCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
29 8 0.25
31 1 0.03
34 3 0.09
35 20 0.62
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.53
Consensus pattern (32 bp):
AAATTTATTATAATGAAATTTTTATTAATATT
Found at i:46037074 original size:50 final size:50
Alignment explanation
Indices: 46036993--46037087 Score: 165
Period size: 50 Copynumber: 1.9 Consensus size: 50
46036983 TGGTCTGATT
*
46036993 ATTCATGCCAACCAAACATTCTCTAACAACATTAGATAAGAGAACTTACC
1 ATTCATGCCAACCAAACATGCTCTAACAACATTAGATAAGAGAACTTACC
46037043 ATTCATGCCAACCAAACATGCTCT-ACGAACATTAGATAAGAGAAC
1 ATTCATGCCAACCAAACATGCTCTAAC-AACATTAGATAAGAGAAC
46037088 CAAGTTGCAA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
49 2 0.05
50 41 0.95
ACGTcount: A:0.42, C:0.25, G:0.11, T:0.22
Consensus pattern (50 bp):
ATTCATGCCAACCAAACATGCTCTAACAACATTAGATAAGAGAACTTACC
Found at i:46042307 original size:18 final size:19
Alignment explanation
Indices: 46042273--46042316 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
46042263 ATTTTTATAG
*
46042273 AAAGA-AAAGGGAGAAATA
1 AAAGAGAAAGGGAAAAATA
*
46042291 AAAGAGAAA-GGAAAAATT
1 AAAGAGAAAGGGAAAAATA
46042309 AAAGAGAA
1 AAAGAGAA
46042317 TAGAGGAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 20 0.87
19 3 0.13
ACGTcount: A:0.68, C:0.00, G:0.25, T:0.07
Consensus pattern (19 bp):
AAAGAGAAAGGGAAAAATA
Found at i:46043876 original size:225 final size:225
Alignment explanation
Indices: 46043485--46043931 Score: 894
Period size: 225 Copynumber: 2.0 Consensus size: 225
46043475 AGGAAATATA
46043485 TTATGAAGAATATTTTTATTTGTGTTCTATGTTATTTTTTTTAGTTTTGTTTTTATTGTACAATA
1 TTATGAAGAATATTTTTATTTGTGTTCTATGTTATTTTTTTTAGTTTTGTTTTTATTGTACAATA
46043550 ATAAGGCTTTCAAAACTAGAAATGTTAATACACATTTTTTATATTTTTAGGATTCGTATTATCCC
66 ATAAGGCTTTCAAAACTAGAAATGTTAATACACATTTTTTATATTTTTAGGATTCGTATTATCCC
46043615 TCTTAATAATGATGATATTTGTAAAACTGGAACCCAAGATCATGATGATGATGATGATAGGCTAT
131 TCTTAATAATGATGATATTTGTAAAACTGGAACCCAAGATCATGATGATGATGATGATAGGCTAT
46043680 TGAGACTTGGTCTTTTATGCATCATTGTAT
196 TGAGACTTGGTCTTTTATGCATCATTGTAT
46043710 TTATGAAGAATATTTTTATTTGTGTTCTATGTTATTTTTTTTAGTTTTGTTTTTATTGTACAATA
1 TTATGAAGAATATTTTTATTTGTGTTCTATGTTATTTTTTTTAGTTTTGTTTTTATTGTACAATA
46043775 ATAAGGCTTTCAAAACTAGAAATGTTAATACACATTTTTTATATTTTTAGGATTCGTATTATCCC
66 ATAAGGCTTTCAAAACTAGAAATGTTAATACACATTTTTTATATTTTTAGGATTCGTATTATCCC
46043840 TCTTAATAATGATGATATTTGTAAAACTGGAACCCAAGATCATGATGATGATGATGATAGGCTAT
131 TCTTAATAATGATGATATTTGTAAAACTGGAACCCAAGATCATGATGATGATGATGATAGGCTAT
46043905 TGAGACTTGGTCTTTTATGCATCATTG
196 TGAGACTTGGTCTTTTATGCATCATTG
46043932 ATGCAGTGAG
Statistics
Matches: 222, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
225 222 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (225 bp):
TTATGAAGAATATTTTTATTTGTGTTCTATGTTATTTTTTTTAGTTTTGTTTTTATTGTACAATA
ATAAGGCTTTCAAAACTAGAAATGTTAATACACATTTTTTATATTTTTAGGATTCGTATTATCCC
TCTTAATAATGATGATATTTGTAAAACTGGAACCCAAGATCATGATGATGATGATGATAGGCTAT
TGAGACTTGGTCTTTTATGCATCATTGTAT
Found at i:46046104 original size:18 final size:18
Alignment explanation
Indices: 46046081--46046116 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
46046071 TAATCGAGTT
46046081 TGGAAAATTAACGAGAAA
1 TGGAAAATTAACGAGAAA
*
46046099 TGGAAAATTAATGAGAAA
1 TGGAAAATTAACGAGAAA
46046117 CCATGTAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.56, C:0.03, G:0.22, T:0.19
Consensus pattern (18 bp):
TGGAAAATTAACGAGAAA
Found at i:46046135 original size:30 final size:30
Alignment explanation
Indices: 46046099--46046157 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
46046089 TAACGAGAAA
*
46046099 TGGAAAATTAATGAGAAACCATGTAATCTT
1 TGGAAAATTAACGAGAAACCATGTAATCTT
**
46046129 TGGAAAATTAACGAGAAATGATGTAATCT
1 TGGAAAATTAACGAGAAACCATGTAATCT
46046158 CAAAATTTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.44, C:0.08, G:0.19, T:0.29
Consensus pattern (30 bp):
TGGAAAATTAACGAGAAACCATGTAATCTT
Found at i:46060162 original size:21 final size:21
Alignment explanation
Indices: 46060129--46060181 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
46060119 GAAGCCAAGG
* *
46060129 TTGCCACATTGATGTGTTGTA
1 TTGCAACACTGATGTGTTGTA
* *
46060150 TTGCGACACTGATGTGTTGTG
1 TTGCAACACTGATGTGTTGTA
46060171 TTGCAACACTG
1 TTGCAACACTG
46060182 GTGCTTCCCC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.19, C:0.17, G:0.26, T:0.38
Consensus pattern (21 bp):
TTGCAACACTGATGTGTTGTA
Found at i:46060686 original size:16 final size:16
Alignment explanation
Indices: 46060659--46060701 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
46060649 TTAGTTTAGG
*
46060659 CTTTCAATTTTTCCTTT
1 CTTTC-ATTTTTCCTCT
*
46060676 CTTTCATTTTTTCTCT
1 CTTTCATTTTTCCTCT
*
46060692 CTTTTATTTT
1 CTTTCATTTT
46060702 AGTCTAGTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 18 0.78
17 5 0.22
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.70
Consensus pattern (16 bp):
CTTTCATTTTTCCTCT
Found at i:46063068 original size:12 final size:11
Alignment explanation
Indices: 46063049--46063125 Score: 73
Period size: 12 Copynumber: 6.2 Consensus size: 11
46063039 TTTAGCAATT
46063049 TTATTATTTTA
1 TTATTATTTTA
46063060 TTCATTATTTTAA
1 TT-ATTATTTT-A
46063073 TGTTATTATCATTTA
1 --TTATTAT--TTTA
46063088 TTATTATTATTA
1 TTATTATT-TTA
46063100 TTATTATTATTA
1 TTATTATT-TTA
46063112 TTATTAGTTTTA
1 TTATTA-TTTTA
46063124 TT
1 TT
46063126 TCCCTTTTAT
Statistics
Matches: 58, Mismatches: 0, Indels: 15
0.79 0.00 0.21
Matches are distributed among these distances:
11 3 0.05
12 34 0.59
13 10 0.17
14 5 0.09
15 3 0.05
16 3 0.05
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:46063091 original size:3 final size:3
Alignment explanation
Indices: 46063049--46063117 Score: 79
Period size: 3 Copynumber: 23.0 Consensus size: 3
46063039 TTTAGCAATT
* * *
46063049 TTA TTA TT- TTA TTCA TTA TT- TTA ATG TTA TTA TCA TTTA TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA
46063094 TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA
46063118 GTTTTATTTC
Statistics
Matches: 56, Mismatches: 6, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
2 4 0.07
3 47 0.84
4 5 0.09
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:46063383 original size:2 final size:2
Alignment explanation
Indices: 46063371--46063411 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
46063361 TAACCGTATG
* *
46063371 TA TA CA TA TA TA TA TA TA TA TA TT TA TA TA TA -A TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
46063412 CATTTGCATA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:46065196 original size:65 final size:65
Alignment explanation
Indices: 46065111--46065245 Score: 202
Period size: 65 Copynumber: 2.1 Consensus size: 65
46065101 ACATAATAGA
* *
46065111 AAAATGATGAAATTATATGTTCTAATAATATTATA-TTTTTGAAATCTTGACGAAGACTTTG-TT
1 AAAATGATGAAATTATATGTTCTAACAATATTATACTTTTAG-AATCTTGACGAAGAC-TTGCTT
46065174 TT
64 TT
* *
46065176 AAAATGATGAAGTTCTATGTTCTAACAATATTATACTTTTAGAATCTTGACGAAGACTTGCTTTT
1 AAAATGATGAAATTATATGTTCTAACAATATTATACTTTTAGAATCTTGACGAAGACTTGCTTTT
46065241 AAAAT
1 AAAAT
46065246 TCTCCATGTG
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
64 3 0.05
65 56 0.88
66 5 0.08
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.41
Consensus pattern (65 bp):
AAAATGATGAAATTATATGTTCTAACAATATTATACTTTTAGAATCTTGACGAAGACTTGCTTTT
Found at i:46067101 original size:16 final size:17
Alignment explanation
Indices: 46067076--46067108 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
46067066 ATAATTTCAC
*
46067076 TTTTATAAA-TTTAAAA
1 TTTTAAAAATTTTAAAA
46067092 TTTTAAAAATTTTAAAA
1 TTTTAAAAATTTTAAAA
46067109 GGCTTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTTAAAAATTTTAAAA
Found at i:46067373 original size:146 final size:147
Alignment explanation
Indices: 46067203--46067498 Score: 585
Period size: 146 Copynumber: 2.0 Consensus size: 147
46067193 AATATTAAAA
46067203 AAATAATATTAAAAAATTTTAATTTTATTATAAAAAATCAATTCTTCTCTCCACTATAATTTCAG
1 AAATAATATTAAAAAATTTTAATTTTATTATAAAAAATCAATTCTTCTCTCCACTATAATTTCAG
46067268 AACTCTTTAATTTCTTTTTCAATTTTTCTTCATATTCATCACTTTTTATTTTCACACACATTTTC
66 AACTCTTTAATTTCTTTTTCAATTTTTCTTCATATTCATCACTTTTTATTTTCACACACATTTTC
46067333 CCCTCTAGGATTTTTAC
131 CCCTCTAGGATTTTTAC
46067350 AAATAATATT-AAAAATTTTAATTTTATTATAAAAAATCAATTCTTCTCTCCACTATAATTTCAG
1 AAATAATATTAAAAAATTTTAATTTTATTATAAAAAATCAATTCTTCTCTCCACTATAATTTCAG
46067414 AACTCTTTAATTTCTTTTTCAATTTTTCTTCATATTCATCACTTTTTATTTTCACACACATTTTC
66 AACTCTTTAATTTCTTTTTCAATTTTTCTTCATATTCATCACTTTTTATTTTCACACACATTTTC
46067479 CCCTCTAGGATTTTTAC
131 CCCTCTAGGATTTTTAC
46067496 AAA
1 AAA
46067499 ATAGCTCATG
Statistics
Matches: 149, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
146 139 0.93
147 10 0.07
ACGTcount: A:0.32, C:0.18, G:0.02, T:0.47
Consensus pattern (147 bp):
AAATAATATTAAAAAATTTTAATTTTATTATAAAAAATCAATTCTTCTCTCCACTATAATTTCAG
AACTCTTTAATTTCTTTTTCAATTTTTCTTCATATTCATCACTTTTTATTTTCACACACATTTTC
CCCTCTAGGATTTTTAC
Found at i:46070219 original size:17 final size:17
Alignment explanation
Indices: 46070184--46070220 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
46070174 TCAAAGTAAG
*
46070184 AAACAAACCAATTGGGA
1 AAACAAACCAATTAGGA
*
46070201 AAACAAACCAATTATGA
1 AAACAAACCAATTAGGA
46070218 AAA
1 AAA
46070221 ATATTTAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.59, C:0.16, G:0.11, T:0.14
Consensus pattern (17 bp):
AAACAAACCAATTAGGA
Found at i:46076751 original size:20 final size:20
Alignment explanation
Indices: 46076723--46076761 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
46076713 ATATGGAAAT
46076723 AATAATTA-TAAAATATAAAC
1 AATAATTATTAAAAT-TAAAC
*
46076743 AATATTTATTAAAATTAAA
1 AATAATTATTAAAATTAAA
46076762 TAAAAATGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (20 bp):
AATAATTATTAAAATTAAAC
Found at i:46077222 original size:19 final size:20
Alignment explanation
Indices: 46077195--46077233 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
46077185 AGATGTATTG
*
46077195 TATATTTATAAAAT-TTTAA
1 TATAATTATAAAATATTTAA
*
46077214 TATAATTATATAATATTTAA
1 TATAATTATAAAATATTTAA
46077234 AATATATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TATAATTATAAAATATTTAA
Found at i:46078307 original size:27 final size:27
Alignment explanation
Indices: 46078265--46078325 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
46078255 AATAATACCG
*
46078265 TTATTATACCTATCAAAGATGTTAGAT
1 TTATTATACCTATCAAAAATGTTAGAT
*
46078292 TTATTATACCTGTCAAAAATGTTAGAT
1 TTATTATACCTATCAAAAATGTTAGAT
46078319 TTATTAT
1 TTATTAT
46078326 GTAGGAAGAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.36, C:0.10, G:0.10, T:0.44
Consensus pattern (27 bp):
TTATTATACCTATCAAAAATGTTAGAT
Found at i:46079294 original size:96 final size:96
Alignment explanation
Indices: 46079130--46079321 Score: 357
Period size: 96 Copynumber: 2.0 Consensus size: 96
46079120 TATAGCACAT
*
46079130 ATATATACAAATTGTTAAATTTTATAGCCATAATGACTTATTTAGTCCTCAAATTTTACAAAAAA
1 ATATAAACAAATTGTTAAATTTTATAGCCATAATGACTTATTTAGTCCTCAAATTTTACAAAAAA
46079195 CAATCATTTTAACCTTTCATTTAATTTTTTG
66 CAATCATTTTAACCTTTCATTTAATTTTTTG
*
46079226 ATATAAACAAATTGTTAAATTTTATAGCCATAATGACTTATTTGGTCCTCAAATTTTACAAAAAA
1 ATATAAACAAATTGTTAAATTTTATAGCCATAATGACTTATTTAGTCCTCAAATTTTACAAAAAA
*
46079291 CAATCATTTTAACTTTTCATTTAATTTTTTG
66 CAATCATTTTAACCTTTCATTTAATTTTTTG
46079322 CCTCTTTTAG
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
96 93 1.00
ACGTcount: A:0.38, C:0.13, G:0.06, T:0.44
Consensus pattern (96 bp):
ATATAAACAAATTGTTAAATTTTATAGCCATAATGACTTATTTAGTCCTCAAATTTTACAAAAAA
CAATCATTTTAACCTTTCATTTAATTTTTTG
Found at i:46081089 original size:193 final size:194
Alignment explanation
Indices: 46080760--46081315 Score: 803
Period size: 193 Copynumber: 2.8 Consensus size: 194
46080750 ATTGAGAGCC
***
46080760 AAAAACTAGGCTCATAATCCAGCAAAGTTAGTATTATAGGTAAATTAGCAACGGATAACAACTTG
1 AAAAACTAGGCTCATAATCCAGCAAAGTTAGTATTATAGGGCTATTAGCAACGGATAACAACTTG
*
46080825 TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTTGAC
66 TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGAC
* * * *
46080890 TTTGCTGAATTACGAGCCTAGTTTTCCTTTCATTGGCATGCAATCATTAGTTGATGAAGAG-AT
131 TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTGGCATACAATCAGTAGTTGATGAAGAGAAA
* * *
46080953 AAAAACTAGGCTCATAGTCCAGCAAAGTTTGTATTGTAGGGCTATTAGCAACGGATAACAACTTG
1 AAAAACTAGGCTCATAATCCAGCAAAGTTAGTATTATAGGGCTATTAGCAACGGATAACAACTTG
46081018 TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGAC
66 TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGAC
*
46081083 TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTGGCATATAATCAGTAGTTGATGAAGAGAAAA
131 TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTGGCATACAATCAGTAGTTGATGAAGAG---A
46081148 AA
193 AA
* * ** * * *
46081150 AAAGAACTAGGTTCATAATCCAGCAAAAGTGAACATTATAGGGCTATTAACAATGGATAATAACT
1 AAA-AACTAGGCTCATAATCCAGC-AAAGTTAGTATTATAGGGCTATTAGCAACGGATAACAACT
* * *
46081215 TGTATTTGCAAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAA-TTGAATGTC
64 TGTACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGAT-AATGTC
* * *
46081279 GACTTTGCTAAATTATGAGTCTAACTTTT-CTTTCATT
128 GACTTTGCTGAATTATGAGCCT-AGTTTTCCTTTCATT
46081316 TACAAGTAAC
Statistics
Matches: 327, Mismatches: 28, Indels: 10
0.90 0.08 0.03
Matches are distributed among these distances:
193 180 0.55
197 4 0.01
198 19 0.06
199 119 0.36
200 5 0.02
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.32
Consensus pattern (194 bp):
AAAAACTAGGCTCATAATCCAGCAAAGTTAGTATTATAGGGCTATTAGCAACGGATAACAACTTG
TACTTGCCAATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGAC
TTTGCTGAATTATGAGCCTAGTTTTCCTTTCATTGGCATACAATCAGTAGTTGATGAAGAGAAA
Found at i:46090610 original size:17 final size:17
Alignment explanation
Indices: 46090575--46090611 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
46090565 TCAAAGTAAG
*
46090575 AAACAAACCAATTGGGA
1 AAACAAACCAATTAGGA
*
46090592 AAACAAACCAATTATGA
1 AAACAAACCAATTAGGA
46090609 AAA
1 AAA
46090612 ATATTTAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.59, C:0.16, G:0.11, T:0.14
Consensus pattern (17 bp):
AAACAAACCAATTAGGA
Found at i:46101631 original size:29 final size:29
Alignment explanation
Indices: 46101572--46101635 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
46101562 AAATATACTT
**
46101572 TTTAGTCACTATATATTTTATATTTGGAA
1 TTTAGTCACTATATATTTTATATTTAAAA
* *
46101601 TTTAGTCACTCTAT-TTTTATTTTTAAAAA
1 TTTAGTCACTATATATTTTATATTT-AAAA
46101630 TTTAGT
1 TTTAGT
46101636 TATACTTTCA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 9 0.30
29 21 0.70
ACGTcount: A:0.30, C:0.08, G:0.08, T:0.55
Consensus pattern (29 bp):
TTTAGTCACTATATATTTTATATTTAAAA
Found at i:46104621 original size:3 final size:3
Alignment explanation
Indices: 46104550--46104606 Score: 71
Period size: 3 Copynumber: 19.0 Consensus size: 3
46104540 GCATATGGAT
* * *
46104550 ATA AAA ATA ATG A-A ATA ATA ATA ATA ATA ATA ATA ATA GTAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA
46104595 ATA ATA ATA ATA
1 ATA ATA ATA ATA
46104607 CAATGTCAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
2 1 0.02
3 43 0.93
4 2 0.04
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:46106214 original size:44 final size:44
Alignment explanation
Indices: 46106162--46106323 Score: 190
Period size: 44 Copynumber: 3.7 Consensus size: 44
46106152 ACCAGTATGG
*
46106162 GAAGACAAGATCTGGTATT-TTTGATCTACTTCACGCCAGTACAT
1 GAAGACAAGATCTGCT-TTCTTTGATCTACTTCACGCCAGTACAT
* * *
46106206 GAAGACAAGATCTGCTTTCTTTGATCTGCTTCGCAACCAGT--AT
1 GAAGACAAGATCTGCTTTCTTTGATCTACTTCAC-GCCAGTACAT
* *
46106249 GGAAGACAATATCTG-TTGACTTTGATCTACTTCACGCC-GATACAT
1 -GAAGACAAGATCTGCTT-TCTTTGATCTACTTCACGCCAG-TACAT
46106294 GAAGACAAGATCTGCTTTCTTTGATCTACT
1 GAAGACAAGATCTGCTTTCTTTGATCTACT
46106324 CCACCACCAG
Statistics
Matches: 99, Mismatches: 11, Indels: 16
0.79 0.09 0.13
Matches are distributed among these distances:
42 1 0.01
43 9 0.09
44 80 0.81
45 9 0.09
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.33
Consensus pattern (44 bp):
GAAGACAAGATCTGCTTTCTTTGATCTACTTCACGCCAGTACAT
Found at i:46106296 original size:88 final size:88
Alignment explanation
Indices: 46106146--46106338 Score: 282
Period size: 88 Copynumber: 2.2 Consensus size: 88
46106136 TCTGCGGTTT
*
46106146 TTCGCCACCAGTATGGGAAGACAAGATCTGGTATTTTTGATCTACTTCACGCCAGTACATGAAGA
1 TTCGCCACCAGTAT-GGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGA
*
46106211 CAAGATCTGCTTTCTTTGATCTGC
65 CAAGATCTGCTTTCTTTGATCTAC
* * *
46106235 TTCGCAACCAGTATGGAAGACAATATCTGTTGA-CTTTGATCTACTTCACGCC-GATACATGAAG
1 TTCGCCACCAGTATGGAAGACAAGATCTGGT-ATCTTTGATCTACTTCACGCCAG-TACATGAAG
46106298 ACAAGATCTGCTTTCTTTGATCTAC
64 ACAAGATCTGCTTTCTTTGATCTAC
* *
46106323 TCCACCACCAGTATGG
1 TTCGCCACCAGTATGG
46106339 GGAGATAAGA
Statistics
Matches: 94, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
87 1 0.01
88 79 0.84
89 14 0.15
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.31
Consensus pattern (88 bp):
TTCGCCACCAGTATGGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACATGAAGAC
AAGATCTGCTTTCTTTGATCTAC
Found at i:46106630 original size:44 final size:44
Alignment explanation
Indices: 46106580--46106719 Score: 165
Period size: 43 Copynumber: 3.2 Consensus size: 44
46106570 TCTACTTTCT
46106580 TTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTGTATA
1 TTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTGTATA
* * * * *** * * *
46106624 TTCGATCTACTTC-ACGCTAGTACATGAAGACAAGATCTGTATTCC
1 TTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTGTA-T-A
46106669 TTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTGTATA
1 TTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTGTATA
46106713 TTCGATC
1 TTCGATC
46106720 CACTTAACTA
Statistics
Matches: 73, Mismatches: 20, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
43 20 0.27
44 20 0.27
45 13 0.18
46 20 0.27
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (44 bp):
TTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTGTATA
Found at i:46106648 original size:89 final size:89
Alignment explanation
Indices: 46106538--46106724 Score: 306
Period size: 89 Copynumber: 2.1 Consensus size: 89
46106528 TACTATCTTT
* *
46106538 GATCTACTTCACGCTGATACATGAAGACAATATCTACT-TTCTTTCGATCTGCTTCGCCACCAGT
1 GATCTACTTCACGCTGATACATGAAGACAAGATCT-CTATTCCTTCGATCTGCTTCGCCACCAGT
46106602 ATGGGAAGGCGAGATCTGTATATTC
65 ATGGGAAGGCGAGATCTGTATATTC
*
46106627 GATCTACTTCACGCT-AGTACATGAAGACAAGATCTGTATTCCTTCGATCTGCTTCGCCACCAGT
1 GATCTACTTCACGCTGA-TACATGAAGACAAGATCTCTATTCCTTCGATCTGCTTCGCCACCAGT
46106691 ATGGGAAGGCGAGATCTGTATATTC
65 ATGGGAAGGCGAGATCTGTATATTC
*
46106716 GATCCACTT
1 GATCTACTT
46106725 AACTACCAAT
Statistics
Matches: 92, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
88 2 0.02
89 90 0.98
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (89 bp):
GATCTACTTCACGCTGATACATGAAGACAAGATCTCTATTCCTTCGATCTGCTTCGCCACCAGTA
TGGGAAGGCGAGATCTGTATATTC
Found at i:46106742 original size:44 final size:43
Alignment explanation
Indices: 46106580--46106742 Score: 137
Period size: 44 Copynumber: 3.7 Consensus size: 43
46106570 TCTACTTTCT
* * *
46106580 TTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTGTATA
1 TTCGATCTACTTC-ACACCAGTATAGGAAGGCGAGATCTGTATA
* * * * * * *
46106624 TTCGATCTACTTCACGCTAGTACATGAAGACAAGATCTGTATTCC
1 TTCGATCTACTTCACACCAGTATAGGAAGGCGAGATCTGTA-T-A
* * *
46106669 TTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTGTATA
1 TTCGATCTACTTC-ACACCAGTATAGGAAGGCGAGATCTGTATA
* * *
46106713 TTCGATCCACTTAACTACCAATATAGGAAG
1 TTCGATCTACTTCAC-ACCAGTATAGGAAG
46106743 ACAAGACCTG
Statistics
Matches: 89, Mismatches: 26, Indels: 8
0.72 0.21 0.07
Matches are distributed among these distances:
43 21 0.24
44 35 0.39
45 13 0.15
46 20 0.22
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.28
Consensus pattern (43 bp):
TTCGATCTACTTCACACCAGTATAGGAAGGCGAGATCTGTATA
Found at i:46106913 original size:44 final size:45
Alignment explanation
Indices: 46106789--46106915 Score: 141
Period size: 45 Copynumber: 2.8 Consensus size: 45
46106779 TTCAGGAAGA
46106789 TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTATTCCTT
1 TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTATTCCTT
* * * * *** * *
46106834 CGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTGT-TAT-CTT
1 TGATCTACTTC-ACGCCAGTACATGAAGACAAGATCTGTAT-TCCTT
46106879 TGATCTACTTCACGCCAGTACATGAAGACAAGATCTG
1 TGATCTACTTCACGCCAGTACATGAAGACAAGATCTG
46106916 CTTTTTCCTT
Statistics
Matches: 62, Mismatches: 18, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
44 19 0.31
45 22 0.35
46 21 0.34
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.28
Consensus pattern (45 bp):
TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTATTCCTT
Found at i:46106956 original size:92 final size:90
Alignment explanation
Indices: 46106789--46106964 Score: 325
Period size: 92 Copynumber: 1.9 Consensus size: 90
46106779 TTCAGGAAGA
46106789 TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTATTCCTTCGATCTGCTTCGCCACCAGT
1 TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTATTCCTTCGATCTGCTTCGCCACCAGT
46106854 ATGGGAAGGCGAGATCTGTTATCTT
66 ATGGGAAGGCGAGATCTGTTATCTT
*
46106879 TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTTCCTTCGATCTGCTTCGCCACCA
1 TGATCTACTTCACGCCAGTACATGAAGACAAGATCTG--TATTCCTTCGATCTGCTTCGCCACCA
46106944 GTATGGGAAGGCGAGATCTGT
64 GTATGGGAAGGCGAGATCTGT
46106965 ATATTCGATC
Statistics
Matches: 83, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
90 37 0.45
92 46 0.55
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.30
Consensus pattern (90 bp):
TGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTATTCCTTCGATCTGCTTCGCCACCAGT
ATGGGAAGGCGAGATCTGTTATCTT
Found at i:46106961 original size:48 final size:46
Alignment explanation
Indices: 46106819--46106964 Score: 161
Period size: 44 Copynumber: 3.2 Consensus size: 46
46106809 CATGAAGACA
*
46106819 AGATCTGTATTCCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCG
1 AGATCTGTTTTCCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCG
* * * * * *** * *
46106865 AGATCTGTTAT-CTTTGATCTACTTC-ACGCCAGTACATGAAGACA
1 AGATCTGTTTTCCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCG
46106909 AGATCTGCTTTTTCCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCG
1 AGATCTG--TTTTCCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCG
46106957 AGATCTGT
1 AGATCTGT
46106965 ATATTCGATC
Statistics
Matches: 75, Mismatches: 21, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
44 19 0.25
45 12 0.16
46 13 0.17
47 12 0.16
48 19 0.25
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.31
Consensus pattern (46 bp):
AGATCTGTTTTCCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCG
Found at i:46106988 original size:255 final size:252
Alignment explanation
Indices: 46106537--46107044 Score: 885
Period size: 255 Copynumber: 2.0 Consensus size: 252
46106527 ATACTATCTT
* * *
46106537 TGATCTACTTCACGCTGATACATGAAGACAATATCTACTTTCTTTCGATCTGCTTCGCCACCAGT
1 TGATCTACTTCACGCAGATACATGAAGACAAGATCTACTTTCCTTCGATCTGCTTCGCCACCAGT
*
46106602 ATGGGAAGGCGAGATCTGTATATTCGATCTACTTCACGCTAGTACATGAAGACAAGATCTGTATT
66 ATGGGAAGGCGAGATCTGTATATTCGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTATT
46106667 CCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTGTATATTCGATCCACTTAACTACC
131 CCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTGTATATTCGATCCACTTAACTACC
46106732 AATATAGGAAGACAAGACCTGCTGATTTTCAACCTGCTCCACTGTTGTTCAGGAAGA
196 AATATAGGAAGACAAGACCTGCTGATTTTCAACCTGCTCCACTGTTGTTCAGGAAGA
*
46106789 TGATCTACTTCACGCCAG-TACATGAAGACAAGATCT-GTATTCCTTCGATCTGCTTCGCCACCA
1 TGATCTACTTCACG-CAGATACATGAAGACAAGATCTACT-TTCCTTCGATCTGCTTCGCCACCA
* *
46106852 GTATGGGAAGGCGAGATCTGTTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGC
64 GTATGGGAAGGCGAGATCTG-TATATTCGATCTACTTCACGCCAGTACATGAAGACAAGATCTG-
*
46106917 TTTTTCCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTGTATATTCGATCCACTTAA
127 -TATTCCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTGTATATTCGATCCACTTAA
46106982 CTACCAATATAGGAAGACAAGACCTGCTGATTTTCAACCTGCTCCACTGTTGTTCAGGAAGA
191 CTACCAATATAGGAAGACAAGACCTGCTGATTTTCAACCTGCTCCACTGTTGTTCAGGAAGA
46107044 T
1 T
46107045 ATGGCTTTAT
Statistics
Matches: 243, Mismatches: 8, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
251 1 0.00
252 74 0.30
253 42 0.17
255 126 0.52
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (252 bp):
TGATCTACTTCACGCAGATACATGAAGACAAGATCTACTTTCCTTCGATCTGCTTCGCCACCAGT
ATGGGAAGGCGAGATCTGTATATTCGATCTACTTCACGCCAGTACATGAAGACAAGATCTGTATT
CCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATCTGTATATTCGATCCACTTAACTACC
AATATAGGAAGACAAGACCTGCTGATTTTCAACCTGCTCCACTGTTGTTCAGGAAGA
Found at i:46106998 original size:92 final size:92
Alignment explanation
Indices: 46106807--46107009 Score: 277
Period size: 92 Copynumber: 2.2 Consensus size: 92
46106797 TTCACGCCAG
*
46106807 TACATGAAGACAAGATCTG--TATTCCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATC
1 TACAGGAAGACAAGATCTGCTTATTCCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATC
* * * * * *
46106870 TGTTATCTTTGATCTACTTCACGCCAG
66 TGTTATATTCGATCCACTTAACACCAA
* *
46106897 TACATGAAGACAAGATCTGCTTTTTCCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATC
1 TACAGGAAGACAAGATCTGCTTATTCCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATC
46106962 TG-TATATTCGATCCACTTAACTACCAA
66 TGTTATATTCGATCCACTTAAC-ACCAA
* *
46106989 TATAGGAAGACAAGACCTGCT
1 TACAGGAAGACAAGATCTGCT
46107010 GATTTTCAAC
Statistics
Matches: 100, Mismatches: 10, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
90 19 0.19
91 15 0.15
92 66 0.66
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (92 bp):
TACAGGAAGACAAGATCTGCTTATTCCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCGAGATC
TGTTATATTCGATCCACTTAACACCAA
Found at i:46108433 original size:48 final size:48
Alignment explanation
Indices: 46108283--46108424 Score: 198
Period size: 48 Copynumber: 3.0 Consensus size: 48
46108273 TAGCCTCTCC
* * * * *
46108283 TTTTTTTTT-ACTCAAGGCTCCCTTTGTAGGGTTTCACCCTGGTCTCT
1 TTTTTTTTTGACTCAAAGCACCCTTTGTAGGCTTTCACCTTGGTCCCT
*
46108330 TTTTTTTTTGAATCAAAGCACCCTTTGTAGGCTTTTCACCTTGG-CCCT
1 TTTTTTTTTGACTCAAAGCACCCTTTGTAGGC-TTTCACCTTGGTCCCT
*
46108378 TTTTTTTTTGACTCAAAGCGCCCTTTGTAGGCTTTCACCTTGGTCCC
1 TTTTTTTTTGACTCAAAGCACCCTTTGTAGGCTTTCACCTTGGTCCC
46108425 ACCTTTTTTA
Statistics
Matches: 84, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
47 20 0.24
48 54 0.64
49 10 0.12
ACGTcount: A:0.13, C:0.26, G:0.16, T:0.44
Consensus pattern (48 bp):
TTTTTTTTTGACTCAAAGCACCCTTTGTAGGCTTTCACCTTGGTCCCT
Found at i:46115316 original size:34 final size:32
Alignment explanation
Indices: 46115261--46115358 Score: 115
Period size: 34 Copynumber: 2.9 Consensus size: 32
46115251 AAAATAAAGG
*
46115261 AAAAAAATGCATATGTATATATTTACAAAATAGA
1 AAAAAAATGTATATGTATATATTTACAAAAT--A
* *
46115295 AAAAAAATGTATAAGTCTATATATTTACAACATA
1 AAAAAAATGTAT-A-TGTATATATTTACAAAATA
* *
46115329 AAAGAAATGTATATGTATATATTTATAAAA
1 AAAAAAATGTATATGTATATATTTACAAAA
46115359 CATAAAATAT
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
32 14 0.25
33 1 0.02
34 23 0.42
35 1 0.02
36 16 0.29
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.33
Consensus pattern (32 bp):
AAAAAAATGTATATGTATATATTTACAAAATA
Found at i:46117964 original size:198 final size:193
Alignment explanation
Indices: 46117508--46118047 Score: 576
Period size: 192 Copynumber: 2.8 Consensus size: 193
46117498 AAAATTAAAA
* * ** * * * *
46117508 CTCATAATCTAGCAAAATCTACATTATAGGGCTATTAGTAATAGATAACAACCTGTACTTGACGA
1 CTCATAATCCAGCAAAATCAACATTATAGGGCTATTAACAATGGATAACAACTTGTACTTGCCAA
* * * * * *
46117573 TGATCAATTAACA-A--AT-ACTGATC-CTTAATTGAGAGCTAA-ATTAATG-CTGATTTTACTG
66 TGATCAATCAACACATGTTGATTGATCTC-TAATTGAGAGCCAAGA-TAATGTC-GACTTTGCTG
* * * *
46117631 AATTATGAGTCTAGTTTTCCTTTTATTGCCATGCAATCATTAGTTGATGAAGAGATAAAAACTAG
128 AATTATGAGTCTAGTTTTCCTTTCATCGCCATACAATCATTAGTTGATGAAGAGAAAAAAACTAG
46117696 G
193 G
* ** *
46117697 CTCATAATCTAGCAAAATCAGTATTATAGGGCTATTAGCAATGGATAACAACTTGTACTTGCCAA
1 CTCATAATCCAGCAAAATCAACATTATAGGGCTATTAACAATGGATAACAACTTGTACTTGCCAA
* *
46117762 TGATC-ATCAACGCATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGGCTTTGCTGAAT
66 TGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGACTTTGCTGAAT
** * *
46117826 TATGACCCTAGTTTTCCTTTCATCGGCATACAATCTTTAGTTGATGAAGAGAAAAAAAAAAAAAC
131 TATGAGTCTAGTTTTCCTTTCATCGCCATACAATCATTAGTTGATGAAGAG------AAAAAAAC
46117891 TAGG
190 TAGG
* * * * * *
46117895 TTCATAATCCAGCAAAGTGAACATTATGGGGCTATTAACAATGGATAGCAACTTGTA-TTTCCAA
1 CTCATAATCCAGCAAAATCAACATTATAGGGCTATTAACAATGGATAACAACTTGTACTTGCC-A
** *
46117959 ATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAATTTAATGTCGACTTTGCTAAA
65 ATGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGACTTTGCTGAA
* *
46118024 TTATGAGTCTAATTTTTCTTTCAT
130 TTATGAGTCTAGTTTTCCTTTCAT
46118048 TTACAAGCAA
Statistics
Matches: 293, Mismatches: 43, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
188 5 0.02
189 63 0.22
191 1 0.00
192 78 0.27
193 3 0.01
197 4 0.01
198 66 0.23
199 73 0.25
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (193 bp):
CTCATAATCCAGCAAAATCAACATTATAGGGCTATTAACAATGGATAACAACTTGTACTTGCCAA
TGATCAATCAACACATGTTGATTGATCTCTAATTGAGAGCCAAGATAATGTCGACTTTGCTGAAT
TATGAGTCTAGTTTTCCTTTCATCGCCATACAATCATTAGTTGATGAAGAGAAAAAAACTAGG
Found at i:46119167 original size:31 final size:31
Alignment explanation
Indices: 46119092--46119173 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 31
46119082 CAACTATGAA
* *
46119092 AATTTTTAATTTAGTCACTAACATTTTAGAT
1 AATTTTTAATTTGGTCACTCACATTTTAGAT
** *
46119123 AATTACTATTTTGGTCACTCACATTTTAGAT
1 AATTTTTAATTTGGTCACTCACATTTTAGAT
** *
46119154 CGTTTTTAGTTTGGTCACTC
1 AATTTTTAATTTGGTCACTC
46119174 TCTATTAAAT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.27, C:0.15, G:0.11, T:0.48
Consensus pattern (31 bp):
AATTTTTAATTTGGTCACTCACATTTTAGAT
Found at i:46124203 original size:44 final size:45
Alignment explanation
Indices: 46124107--46124203 Score: 101
Period size: 45 Copynumber: 2.2 Consensus size: 45
46124097 AATATTATAA
* * *
46124107 AATTATTTTTTTACATTTTTATACTTTTTAAATAATTTTAATAAT
1 AATTAATTTTTAACATTTTTATACTTTTTAAATAATTTTAAAAAT
* * *
46124152 -ATGTAATTTTTAATATTTTTTTATTTTTTAAA-AA-TTTAAAAATT
1 AAT-TAATTTTTAACATTTTTATACTTTTTAAATAATTTTAAAAA-T
46124196 AATTAATT
1 AATTAATT
46124204 GCTGATGTGA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
43 7 0.16
44 10 0.23
45 26 0.60
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (45 bp):
AATTAATTTTTAACATTTTTATACTTTTTAAATAATTTTAAAAAT
Found at i:46125385 original size:217 final size:218
Alignment explanation
Indices: 46125002--46125437 Score: 856
Period size: 217 Copynumber: 2.0 Consensus size: 218
46124992 AACTTAAGAT
46125002 ACCAGCTGGTTGACCTAAATCAATTCCTTTTTACTAACAGGATTGGTGTTGATGAGTGGCTTCGG
1 ACCAGCTGGTTGACCTAAATCAATTCCTTTTTACTAACAGGATTGGTGTTGATGAGTGGCTTCGG
46125067 GTTCCTACTCTGCAAGATGTATTTTCAATTCGTGATTGCAGCGGGTTTCTGGAAAGTACTGGCAA
66 GTTCCTACTCTGCAAGATGTATTTTCAATTCGTGATTGCAGCGGGTTTCTGGAAAGTACTGGCAA
46125132 ACCAGTCCTTCCGACTTTAGCGCAGGTAAGCTAGGACCCCAACCTTTTCCCTGCCTTCCTTCGGA
131 ACCAGTCCTTCCGACTTTAGCGCAGGTAAGCTAGGACCCCAACCTTTTCCCTGCCTTCCTTCGGA
46125197 TCTTTTTGTTCTCATAAAGTTCG
196 TCTTTTTGTTCTCATAAAGTTCG
46125220 ACCAGCT-GTTGACCTAAATCAATTCCTTTTTACTAACAGGATTGGTGTTGATGAGTGGCTTCGG
1 ACCAGCTGGTTGACCTAAATCAATTCCTTTTTACTAACAGGATTGGTGTTGATGAGTGGCTTCGG
46125284 GTTCCTACTCTGCAAGATGTATTTTCAATTCGTGATTGCAGCGGGTTTCTGGAAAGTACTGGCAA
66 GTTCCTACTCTGCAAGATGTATTTTCAATTCGTGATTGCAGCGGGTTTCTGGAAAGTACTGGCAA
*
46125349 ACCAGTCCTTCCGGCTTTAGCGCAGGTAAGCTAGGACCCCAACCTTTTCCCTGCCTTCCTTCGGA
131 ACCAGTCCTTCCGACTTTAGCGCAGGTAAGCTAGGACCCCAACCTTTTCCCTGCCTTCCTTCGGA
46125414 TCTTTTTGTTCTCATAAAGTTCG
196 TCTTTTTGTTCTCATAAAGTTCG
46125437 A
1 A
46125438 GATAACATCA
Statistics
Matches: 217, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
217 210 0.97
218 7 0.03
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (218 bp):
ACCAGCTGGTTGACCTAAATCAATTCCTTTTTACTAACAGGATTGGTGTTGATGAGTGGCTTCGG
GTTCCTACTCTGCAAGATGTATTTTCAATTCGTGATTGCAGCGGGTTTCTGGAAAGTACTGGCAA
ACCAGTCCTTCCGACTTTAGCGCAGGTAAGCTAGGACCCCAACCTTTTCCCTGCCTTCCTTCGGA
TCTTTTTGTTCTCATAAAGTTCG
Found at i:46125926 original size:177 final size:184
Alignment explanation
Indices: 46125628--46126137 Score: 678
Period size: 193 Copynumber: 2.8 Consensus size: 184
46125618 AGAGTTGGAC
* * * * *
46125628 CCAAGTTAATGTCGACTTTGCTGAATTATGAGTCTAGTTTTCCTTTCATTGGCACGCAACCATTA
1 CCAAGTTAATGTTGACTTTGTTGAATTATGAGTCTAGTTTTCCTTTCATTAGCATGCAATCATTA
*
46125693 GTTGATGAAAAGATAAAAACTAGGATCATAATCTAGCAAAGTCAGCATTATAGGGCTATTAGCAA
66 GTTGATGAAGAGATAAAAACTAGGATCATAATCTAGCAAAGTCAGCATTATAGGGCTATTAGCAA
* *
46125758 CGGATGGCAA-T-TTG-T-TC-TT-GC-CATGTTGATTGATCTCTAATTGAGAG
131 CGGATAGCAATTATTGATATCATTAACACATGTTGATTGATCTCTAATTGAGAG
* *
46125805 CCAAGTTAATGTTGGCTTTGTTGAATTATGAGTCTAGTTTTCCTTTCATTAGCTTGCAATCATTA
1 CCAAGTTAATGTTGACTTTGTTGAATTATGAGTCTAGTTTTCCTTTCATTAGCATGCAATCATTA
* * *
46125870 GTTGATGAAGAGATAAAAACTAGGCTCATAATCCAGCAAAGTCAGCATTCTAGGGCTATTAGCAA
66 GTTGATGAAGAGATAAAAACTAGGATCATAATCTAGCAAAGTCAGCATTATAGGGCTATTAGCAA
* *
46125935 CGGACAACAACTTGTACTTGCCAATGATCAATTAACACATGTTGATTGATCTCTAATTGAGAG
131 CGGATAGCAA--T-TA-TTG---AT-ATC-ATTAACACATGTTGATTGATCTCTAATTGAGAG
* *
46125998 CCAAGTTAATTTTGACTTTGCTTCG--TTATGAGTCTAGTTTTCCTTTCATTAGCATACAATCAT
1 CCAAGTTAATGTTGACTTTG-TT-GAATTATGAGTCTAGTTTTCCTTTCATTAGCATGCAATCAT
* * *
46126061 TATTTGATGAAGAGATAAAAACTAGGGTCATAATCTAGCAAAGTCAACATTATAGGGCTATTAGC
64 TAGTTGATGAAGAGATAAAAACTAGGATCATAATCTAGCAAAGTCAGCATTATAGGGCTATTAGC
46126126 AACGGATAGCAA
129 AACGGATAGCAA
46126138 CCTGTATTTG
Statistics
Matches: 289, Mismatches: 26, Indels: 20
0.86 0.08 0.06
Matches are distributed among these distances:
177 126 0.44
181 1 0.00
183 3 0.01
187 1 0.00
189 2 0.01
191 2 0.01
192 1 0.00
193 150 0.52
194 2 0.01
195 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33
Consensus pattern (184 bp):
CCAAGTTAATGTTGACTTTGTTGAATTATGAGTCTAGTTTTCCTTTCATTAGCATGCAATCATTA
GTTGATGAAGAGATAAAAACTAGGATCATAATCTAGCAAAGTCAGCATTATAGGGCTATTAGCAA
CGGATAGCAATTATTGATATCATTAACACATGTTGATTGATCTCTAATTGAGAG
Found at i:46126240 original size:193 final size:193
Alignment explanation
Indices: 46125779--46126240 Score: 636
Period size: 193 Copynumber: 2.4 Consensus size: 193
46125769 TTGTTCTTGC
* *
46125779 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTTGGCTTTGTTGAATTATGAGTCTAGTT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGTCTAGTT
* *
46125844 TTCCTTTCATTAGCTTGCAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATCCAGCAA
66 TTCCTTTCATTAGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATCCAGCAA
* * * * *
46125909 AGTCAGCATTCTAGGGCTATTAGCAACGGACAACAACTTGTACTTGCCAATGATCAATTAACA
131 AGTCAACATTATAGGGCTATTAGCAACGGACAACAACCTGTACTTGCAAATGATCAATCAACA
* ***
46125972 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATTTTGACTTTGCTTCGTTATGAGTCTAGTT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGTCTAGTT
* * *
46126037 TTCCTTTCATTAGCATACAATCATTATTTGATGAAGAGATAAAAACTAGGGTCATAATCTAGCAA
66 TTCCTTTCATTAGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATCCAGCAA
* * * *
46126102 AGTCAACATTATAGGGCTATTAGCAACGGATAGCAACCTGTATTTGTAAATGATCAATCAACA
131 AGTCAACATTATAGGGCTATTAGCAACGGACAACAACCTGTACTTGCAAATGATCAATCAACA
** * * * * ** * *
46126165 TGTGTTGATTGATCTCTAATTGAGAACTAATTTAATGTCGACTTCACTGAATTATAAGTCTAATT
1 CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGTCTAGTT
**
46126230 TTTTTTTCATT
66 TTCCTTTCATT
46126241 TGCAAGTAAC
Statistics
Matches: 233, Mismatches: 36, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
193 233 1.00
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.36
Consensus pattern (193 bp):
CATGTTGATTGATCTCTAATTGAGAGCCAAGTTAATGTTGACTTTGCTGAATTATGAGTCTAGTT
TTCCTTTCATTAGCATACAATCATTAGTTGATGAAGAGATAAAAACTAGGCTCATAATCCAGCAA
AGTCAACATTATAGGGCTATTAGCAACGGACAACAACCTGTACTTGCAAATGATCAATCAACA
Found at i:46130808 original size:44 final size:45
Alignment explanation
Indices: 46130712--46130808 Score: 101
Period size: 45 Copynumber: 2.2 Consensus size: 45
46130702 AATATTATAA
* * *
46130712 AATTATTTTTTTACATTTTTATACTTTTTAAATAATTTTAATAAT
1 AATTAATTTTTAACATTTTTATACTTTTTAAATAATTTTAAAAAT
* * *
46130757 -ATGTAATTTTTAATATTTTTTTATTTTTTAAA-AA-TTTAAAAATT
1 AAT-TAATTTTTAACATTTTTATACTTTTTAAATAATTTTAAAAA-T
46130801 AATTAATT
1 AATTAATT
46130809 GCTGATGTGA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
43 7 0.16
44 10 0.23
45 26 0.60
ACGTcount: A:0.38, C:0.02, G:0.01, T:0.59
Consensus pattern (45 bp):
AATTAATTTTTAACATTTTTATACTTTTTAAATAATTTTAAAAAT
Found at i:46134076 original size:241 final size:241
Alignment explanation
Indices: 46133568--46134828 Score: 1813
Period size: 241 Copynumber: 5.3 Consensus size: 241
46133558 CTCTAACAAT
* * * *
46133568 TAGATTGATTGAAATTGACTATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACACA
1 TAGATCGATTGAAACTGACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACAAA
* * *
46133633 TATAAGATGCTTTCCAATGCTCATTGCTTTATAATGTCAACTTTTCTGGATTATGAGCCTAATTT
66 TATAAGATGCTTTCCAATGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTT
* * *
46133698 TTATTTC-T--T--T-GCATGCAAATGAAAGGAACATTAGACTCATAATTTAGCAAAGTCGACAT
131 TCATTTCTTCATCATCGCATGCAAATGAAAGGAAAATTAGACTCATAATTCAGCAAAGTCGACAT
**
46133757 TAATTTGGCTCTCAATTAAGGATCAATATTTATTAGATAAACAAAC
196 TAATTTGGCTCTCAATTAAGGATCAGCATTTATTAGATAAACAAAC
* * *
46133803 TAGATCGATTGAAACCGACCATGATCAATCTATTAATTAGTACCCGTTTATCTAGTTTTAACACA
1 TAGATCGATTGAAACTGACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACAAA
* * *
46133868 TATAAGATGCTTTCCAATGCTTGTGGCTTTATAATGACAACTTTGCTGGATTATGAGCCTAATTT
66 TATAAGATGCTTTCCAATGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTT
* * * * *
46133933 TCATTTCTTCATCATCAG-ATGCAAATAAAAGGAAAGTTAGACTCGTAATTTAGCAAAGTCGATA
131 TCATTTCTTCATCATC-GCATGCAAATGAAAGGAAAATTAGACTCATAATTCAGCAAAGTCGACA
* *
46133997 TTAATTTGACTCTAAATTAAGGATC-GACATTTATTAGATAAACAAAC
195 TTAATTTGGCTCTCAATTAAGGATCAG-CATTTATTAGATAAACAAAC
46134044 TAGATCGATTGAAACTGACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACAAA
1 TAGATCGATTGAAACTGACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACAAA
* * * * * * * *
46134109 TATAAGATGCTTTCTAATGCTCGTAGCCTTATAATGTCAATTTTGTTGGATTGTGAACGTAGTTT
66 TATAAGATGCTTTCCAATGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTT
* * * * *
46134174 TCATTTCTTCATCATTGCATGCAAATGAAAGGAAAACTAAACTCATAATTCAACAAAGTCAACAT
131 TCATTTCTTCATCATCGCATGCAAATGAAAGGAAAATTAGACTCATAATTCAGCAAAGTCGACAT
*
46134239 TAATTTGGCTCTCAATTAAGGATCAGCTTTTATTAGATAAACAAAC
196 TAATTTGGCTCTCAATTAAGGATCAGCATTTATTAGATAAACAAAC
* * * *
46134285 TAAATCGATTGAAACCGACCACGATCAATCTATTAATTAGCACCCATTTATCTAGTTTTAACAAA
1 TAGATCGATTGAAACTGACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACAAA
*
46134350 TATAAGATGCTTTCCAATACTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTT
66 TATAAGATGCTTTCCAATGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTT
*
46134415 TCATTTCATCATCATCGCATGCAAATGAAAGGAAAATTAGACTCATAATTCAGCAAAGTCGACAT
131 TCATTTCTTCATCATCGCATGCAAATGAAAGGAAAATTAGACTCATAATTCAGCAAAGTCGACAT
*
46134480 TAATTTGACTCTCAATTAAGGATCAGCATTTATTAGATAAACAAAC
196 TAATTTGGCTCTCAATTAAGGATCAGCATTTATTAGATAAACAAAC
* * *
46134526 TCGGTCGATTGAAA-TCGACCATGATCAATCCATTAATTAGTACCCATTTATCTAGTTTTAACAA
1 TAGATCGATTGAAACT-GACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACAA
* * * * * * * * *
46134590 ATATAAGATGCTTTCTAATGCTTGTAGCCTTATAATGTCAATTTTGTTGGATTGTGAACGTAGTT
65 ATATAAGATGCTTTCCAATGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATT
* * * *
46134655 TTCATTTCTTCATCATTGCATGCAAATGAAAGGAAAACTAAACTCATAATTCAGCAAAGTCAACA
130 TTCATTTCTTCATCATCGCATGCAAATGAAAGGAAAATTAGACTCATAATTCAGCAAAGTCGACA
* * *
46134720 TTAATTTGGCTTTCAATTAAGCATCAGCTTTTATTAGATAAACAAAC
195 TTAATTTGGCTCTCAATTAAGGATCAGCATTTATTAGATAAACAAAC
* *
46134767 TAAATCGATT-AAGACTGACCATGATCCATCTATTAATTAGTACCCATTTATCTAGTTTTAAC
1 TAGATCGATTGAA-ACTGACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAAC
46134829 TATTTTCTAA
Statistics
Matches: 914, Mismatches: 99, Indels: 20
0.88 0.10 0.02
Matches are distributed among these distances:
235 126 0.14
236 1 0.00
238 1 0.00
240 4 0.00
241 779 0.85
242 3 0.00
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (241 bp):
TAGATCGATTGAAACTGACCATGATCAATCTATTAATTAGTACCCATTTATCTAGTTTTAACAAA
TATAAGATGCTTTCCAATGCTCGTAGCTTTATAATGTCAACTTTGCTGGATTATGAGCCTAATTT
TCATTTCTTCATCATCGCATGCAAATGAAAGGAAAATTAGACTCATAATTCAGCAAAGTCGACAT
TAATTTGGCTCTCAATTAAGGATCAGCATTTATTAGATAAACAAAC
Found at i:46136380 original size:17 final size:17
Alignment explanation
Indices: 46136342--46136380 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
46136332 GTATGAATCG
46136342 ATTTAAAGATTTTAATT
1 ATTTAAAGATTTTAATT
*
46136359 TTTTAAAGAATTTT-ATT
1 ATTTAAAG-ATTTTAATT
46136376 ATTTA
1 ATTTA
46136381 TAACTAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (17 bp):
ATTTAAAGATTTTAATT
Found at i:46142801 original size:14 final size:16
Alignment explanation
Indices: 46142772--46142812 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
46142762 TAATTTTTAA
46142772 TATTTTTGAAACTTAT
1 TATTTTTGAAACTTAT
*
46142788 T-TTTTTGTAA-TTAT
1 TATTTTTGAAACTTAT
46142802 TATTTTATGAA
1 TATTTT-TGAA
46142813 TTTCTAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
14 5 0.24
15 12 0.57
16 4 0.19
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.61
Consensus pattern (16 bp):
TATTTTTGAAACTTAT
Found at i:46143602 original size:23 final size:22
Alignment explanation
Indices: 46143576--46143620 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
46143566 AATTCAGGGT
46143576 TAATATTTGATACACTAGCAGTG
1 TAATATTT-ATACACTAGCAGTG
* * *
46143599 TAATCTTTTTCCACTAGCAGTG
1 TAATATTTATACACTAGCAGTG
46143621 CAATTTTTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.38
Consensus pattern (22 bp):
TAATATTTATACACTAGCAGTG
Found at i:46143613 original size:22 final size:22
Alignment explanation
Indices: 46143588--46143630 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
46143578 ATATTTGATA
*
46143588 CACTAGCAGTGTAATCTTTTTC
1 CACTAGCAGTGCAATCTTTTTC
*
46143610 CACTAGCAGTGCAATTTTTTT
1 CACTAGCAGTGCAATCTTTTT
46143631 TTTCCACTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.21, G:0.14, T:0.42
Consensus pattern (22 bp):
CACTAGCAGTGCAATCTTTTTC
Found at i:46151334 original size:16 final size:16
Alignment explanation
Indices: 46151296--46151334 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
46151286 ATGCCTATTC
46151296 TATTATATATAATTTAA
1 TATT-TATATAATTTAA
* *
46151313 TTTTTATATAATTTGA
1 TATTTATATAATTTAA
46151329 TATTTA
1 TATTTA
46151335 AACTTTTATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 16 0.84
17 3 0.16
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
TATTTATATAATTTAA
Found at i:46151628 original size:20 final size:20
Alignment explanation
Indices: 46151590--46151635 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
46151580 CTCTGACACT
*
46151590 AAAACAAAAACAAAGCTGATG
1 AAAA-AAAAACAAAACTGATG
*
46151611 AAAAAAAAATAAAACTGATG
1 AAAAAAAAACAAAACTGATG
46151631 AAAAA
1 AAAAA
46151636 TAGGTGATGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.70, C:0.09, G:0.11, T:0.11
Consensus pattern (20 bp):
AAAAAAAAACAAAACTGATG
Found at i:46151900 original size:4 final size:4
Alignment explanation
Indices: 46151891--46151915 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
46151881 GGGAAGGGAA
46151891 AAAG AAAG AAAG AAAG AAAG AAAG A
1 AAAG AAAG AAAG AAAG AAAG AAAG A
46151916 GAAGCATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:46151945 original size:14 final size:14
Alignment explanation
Indices: 46151901--46151952 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
46151891 AAAGAAAGAA
* *
46151901 AGAAAGAAAGAAAG
1 AGAAGGAAAGAGAG
* *
46151915 AGAAGCATAATAGAG
1 AGAAGGA-AAGAGAG
*
46151930 AGAGGGAAAGAGAG
1 AGAAGGAAAGAGAG
46151944 AGAAGGAAA
1 AGAAGGAAA
46151953 AAATAAGTAG
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
14 19 0.66
15 10 0.34
ACGTcount: A:0.60, C:0.02, G:0.35, T:0.04
Consensus pattern (14 bp):
AGAAGGAAAGAGAG
Found at i:46155844 original size:14 final size:14
Alignment explanation
Indices: 46155825--46155859 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
46155815 ACATTTTTTT
* *
46155825 TTCTAATGATATTA
1 TTCTAACGATACTA
46155839 TTCTAACGATACTA
1 TTCTAACGATACTA
46155853 TTCTAAC
1 TTCTAAC
46155860 ATGTAATTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (14 bp):
TTCTAACGATACTA
Done.