Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 139 of 145
Found at i:46157121 original size:65 final size:62
Alignment explanation
Indices: 46157017--46157238 Score: 221
Period size: 56 Copynumber: 3.6 Consensus size: 62
46157007 AGATTAATTG
* **
46157017 CAACATTAAAACTTGGAACAAACTTTGTGGTCATAAATTAGATTAATTGCAACATTACAACATTA
1 CAACATTAAAATTTGGAACAAACTTTGTAAT-ATAAATTA-ATTAATTG-AACATTACAACATTA
* *
46157082 CAACATTAAAATTTGGAGCAAACTTTGTAGTCAT--A--AATT-A--GAACATTACAACATTA
1 CAACATTAAAATTTGGAACAAACTTTGTAAT-ATAAATTAATTAATTGAACATTACAACATTA
* * *
46157138 CAACATTAAAATTTGGAACAAACTTTATAATATAAATT-TTGTAATAT-AA-ATTAAATACATTA
1 CAACATTAAAATTTGGAACAAACTTTGTAATATAAATTAAT-TAAT-TGAACATTACA-ACATTA
* *
46157200 CAATATTAAAAATTGGAACAAACTTTGTAATATAAATTA
1 CAACATTAAAATTTGGAACAAACTTTGTAATATAAATTA
46157239 GGTACATTAG
Statistics
Matches: 135, Mismatches: 11, Indels: 24
0.79 0.06 0.14
Matches are distributed among these distances:
55 2 0.01
56 43 0.32
57 2 0.01
58 1 0.01
59 2 0.01
60 4 0.03
61 6 0.04
62 43 0.32
63 1 0.01
65 31 0.23
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.33
Consensus pattern (62 bp):
CAACATTAAAATTTGGAACAAACTTTGTAATATAAATTAATTAATTGAACATTACAACATTA
Found at i:46158549 original size:659 final size:668
Alignment explanation
Indices: 46157233--46158572 Score: 2036
Period size: 659 Copynumber: 2.0 Consensus size: 668
46157223 TTTGTAATAT
* *
46157233 AAATTAGGTACATTAGATTACATAAGCTCAATTCCTACCCGATCGTGACGATTGTCCAATATGGT
1 AAATTAGGTACAATAGATTACATAAGCTCAATTCCTACCCGATCGTGACAATTGTCCAATATGGT
* * *
46157298 AGTTTCGTTTCGAGCATTTACTTCGATTATGACCAGCTAATCTGCATAATCCACAACGCTTACCG
66 AGTTTCGCTGCGAGCATTTACTTCGATTATGACCAGCTAATCTGCATAATCCACAACGCTTAACG
* * *
46157363 TCAGATTTCTCCTTAATGTCCATTTCATTATGGATTCAGGATGATTGCGGACGACCTTTTGAATT
131 TCAGATTTCTCC----T-TCC---TCA-TATGGATTCAGGATAATTGCGGACAACCTTTCGAATT
* * * * *
46157428 CCTACGCAACCTTTTGTCTAGGATAAGCTCGAAAGATGTCGGAAGCACCTCCAACATAGATAGGT
187 CCTACGCAACCCTTTGTCTAGGACAAGCTCAAAAGACGTCGGAAGCACCTCCAACATAGACAGGT
* *
46157493 CAAGTAGGATGGGGAACTCATTCTCCCAGACACGCAACGTGCGCTTAAGGGCGTACACATCATCG
252 CAAGTAGGACGGGGAACTCATTCTCCCAGACACGCAACGTGCGCTTAAGGGCGTACACATCATCA
* * *
46157558 ACAAATTGTTCAACATTGAGCAAGACTTTAGCATATGCTGTCACGACATGCGTAAATGGATAAAA
317 ACAAATCGTTCAACATTGAGCAAGACTTTAGCACATGCTGCCACGACATGCGTAAATGGATAAAA
* * * **
46157623 AAGTGTTTGGAATCTCTTGCAATCGCACCGTCTATTTCGGATATCAACTCCATAGGACCTAGATA
382 AAGTGTTTGGAACCTCTTACAATCGCACCGTCTATTTCGGAGATCAACTCCATAAAACCTAGATA
*
46157688 GTATACCGGGTCGACGATCGATGGTCTCTGTAACTCAAAACGGTTCAAGACATCGTGAATATACT
447 GTATAACGGGTCGACGATCGATGGTCTCTGTAACTCAAAACGGTTCAAGACATCGTGAATATACT
* *
46157753 TCTACATTCATCAACCTCGCAATCCGACGGTTTGCAACCATTGCATCCTTAACATCTTCAACAAA
512 TCTACATTCATCAACCTCGCAATCCGACGGTTTGCAACCATTACATCATTAACATCTTCAACAAA
* *
46157818 CACGTGTTTCGCCTCCATCTGGTTGACTTGTTGCTGACCCATTCTTGGCATCAAGGTAGCCAATC
577 CACGTGTTCCGCCTCCATCTGGTTGACTTGTTGCTGACCCATTCTTGGCATCAAGGTAGCCAACC
46157883 TGTAGAATGTAGCCGAGAAGACAGATG
642 TGTAGAATGTAGCCGAGAAGACAGATG
* * *
46157910 AAATTAGGTACAATGGATTACGTAAGCTTAATTCCTACCC-ATCGTGACAATTGTCCAATATGGT
1 AAATTAGGTACAATAGATTACATAAGCTCAATTCCTACCCGATCGTGACAATTGTCCAATATGGT
46157974 AGTTTCGCTGCGAGCATTTA-TTCCGATTATGACCAGCTAATCTGCATAATCCACAACGCTTAAC
66 AGTTTCGCTGCGAGCATTTACTT-CGATTATGACCAGCTAATCTGCATAATCCACAACGCTTAAC
*
46158038 GTCGGA-TT-T-C-T-C-C-TATGGATTCAGGATAATTGCGGACAACCTTTCGAATTCCTACGCA
130 GTCAGATTTCTCCTTCCTCATATGGATTCAGGATAATTGCGGACAACCTTTCGAATTCCTACGCA
*
46158096 ACCCTTTGTCTAGGACAAGCTCAAAAGACGTCGGAAGCACCTCCAACATAGACAGGT-TAGATAG
195 ACCCTTTGTCTAGGACAAGCTCAAAAGACGTCGGAAGCACCTCCAACATAGACAGGTCAAG-TAG
** * *
46158160 GACGGGGAACTCATTCTCCCAGACACGCAACGTGTTCTTGAGGGTGTACACATCATCAACAAATC
259 GACGGGGAACTCATTCTCCCAGACACGCAACGTGCGCTTAAGGGCGTACACATCATCAACAAATC
* * * *
46158225 GTTCAACTTTGAGCAAGACTTT-GCACATGTTGCCCCGACATGCGTAAATGGATAAAGAAGTGTT
324 GTTCAACATTGAGCAAGACTTTAGCACATGCTGCCACGACATGCGTAAATGGATAAAAAAGTGTT
* * *
46158289 TGGAACCTTTTACAATCGTACCGTCTATTTCGGAGATCAACTTCATAAAACCTAGATAGTATAAC
389 TGGAACCTCTTACAATCGCACCGTCTATTTCGGAGATCAACTCCATAAAACCTAGATAGTATAAC
* * * *
46158354 GGGTCGACGATCGATGGTCTCTGTAACTCGAAACGTTTCAAGTCATCTTGAATATACTTCTACAT
454 GGGTCGACGATCGATGGTCTCTGTAACTCAAAACGGTTCAAGACATCGTGAATATACTTCTACAT
* * *
46158419 TCATCGACCTCGCAATCCGATGGTTTGCAACCATTACATCATTGACATCTTCAACAAACACGTGT
519 TCATCAACCTCGCAATCCGACGGTTTGCAACCATTACATCATTAACATCTTCAACAAACACGTGT
*
46158484 TCCGCCTCCATCTGGTTGACTTGTTGCTGACTCATTCTTGGCATCAAGGTAGCCAACCTGTAGAA
584 TCCGCCTCCATCTGGTTGACTTGTTGCTGACCCATTCTTGGCATCAAGGTAGCCAACCTGTAGAA
46158549 TGTAGCCGAGAAGACAGATG
649 TGTAGCCGAGAAGACAGATG
46158569 AAAT
1 AAAT
46158573 CGAAAGATGT
Statistics
Matches: 609, Mismatches: 52, Indels: 22
0.89 0.08 0.03
Matches are distributed among these distances:
659 302 0.50
660 176 0.29
662 1 0.00
666 1 0.00
667 1 0.00
673 1 0.00
674 1 0.00
675 4 0.01
676 86 0.14
677 36 0.06
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (668 bp):
AAATTAGGTACAATAGATTACATAAGCTCAATTCCTACCCGATCGTGACAATTGTCCAATATGGT
AGTTTCGCTGCGAGCATTTACTTCGATTATGACCAGCTAATCTGCATAATCCACAACGCTTAACG
TCAGATTTCTCCTTCCTCATATGGATTCAGGATAATTGCGGACAACCTTTCGAATTCCTACGCAA
CCCTTTGTCTAGGACAAGCTCAAAAGACGTCGGAAGCACCTCCAACATAGACAGGTCAAGTAGGA
CGGGGAACTCATTCTCCCAGACACGCAACGTGCGCTTAAGGGCGTACACATCATCAACAAATCGT
TCAACATTGAGCAAGACTTTAGCACATGCTGCCACGACATGCGTAAATGGATAAAAAAGTGTTTG
GAACCTCTTACAATCGCACCGTCTATTTCGGAGATCAACTCCATAAAACCTAGATAGTATAACGG
GTCGACGATCGATGGTCTCTGTAACTCAAAACGGTTCAAGACATCGTGAATATACTTCTACATTC
ATCAACCTCGCAATCCGACGGTTTGCAACCATTACATCATTAACATCTTCAACAAACACGTGTTC
CGCCTCCATCTGGTTGACTTGTTGCTGACCCATTCTTGGCATCAAGGTAGCCAACCTGTAGAATG
TAGCCGAGAAGACAGATG
Found at i:46160929 original size:33 final size:33
Alignment explanation
Indices: 46160891--46160957 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
46160881 TTATTCTATT
46160891 TGAAAATAACAATAAAAATAATAATACATTTTC
1 TGAAAATAACAATAAAAATAATAATACATTTTC
46160924 TGAAAATAACAATAAAAATAATAATACATTTTC
1 TGAAAATAACAATAAAAATAATAATACATTTTC
46160957 T
1 T
46160958 TTCTTTCTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.57, C:0.09, G:0.03, T:0.31
Consensus pattern (33 bp):
TGAAAATAACAATAAAAATAATAATACATTTTC
Found at i:46160962 original size:4 final size:4
Alignment explanation
Indices: 46160953--46160988 Score: 54
Period size: 4 Copynumber: 8.5 Consensus size: 4
46160943 AATAATACAT
46160953 TTTC TTTC TTTC TTTC TTCTC TTTTC TTTC TTTC TT
1 TTTC TTTC TTTC TTTC TT-TC -TTTC TTTC TTTC TT
46160989 CTGCTATTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
4 24 0.80
5 4 0.13
6 2 0.07
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTC
Found at i:46167232 original size:11 final size:11
Alignment explanation
Indices: 46167218--46167267 Score: 50
Period size: 10 Copynumber: 4.7 Consensus size: 11
46167208 CCCAAATAAA
*
46167218 AATAATAAAAT
1 AATAATAAAAC
46167229 AATAAT-AAAC
1 AATAATAAAAC
* *
46167239 AGTAGTAAAAC
1 AATAATAAAAC
46167250 AATAAT-AAAC
1 AATAATAAAAC
*
46167260 AGTAATAA
1 AATAATAA
46167268 TAAACAATTG
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
10 16 0.52
11 15 0.48
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.22
Consensus pattern (11 bp):
AATAATAAAAC
Found at i:46167253 original size:21 final size:21
Alignment explanation
Indices: 46167223--46167263 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
46167213 ATAAAAATAA
*
46167223 TAAAATAATAATAAACAGTAG
1 TAAAACAATAATAAACAGTAG
46167244 TAAAACAATAATAAACAGTA
1 TAAAACAATAATAAACAGTA
46167264 ATAATAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (21 bp):
TAAAACAATAATAAACAGTAG
Found at i:46167270 original size:34 final size:32
Alignment explanation
Indices: 46167218--46167282 Score: 94
Period size: 34 Copynumber: 2.0 Consensus size: 32
46167208 CCCAAATAAA
*
46167218 AATAATAAAATAATAATAAACAGTAGTAAAAC
1 AATAATAAAATAATAATAAACAATAGTAAAAC
*
46167250 AATAATAAACAGTAATAATAAACAATTGTAAAA
1 AATAATAAA-A-TAATAATAAACAATAGTAAAA
46167283 AATTTTAAGC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 9 0.31
33 1 0.03
34 19 0.66
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.23
Consensus pattern (32 bp):
AATAATAAAATAATAATAAACAATAGTAAAAC
Found at i:46168887 original size:22 final size:21
Alignment explanation
Indices: 46168862--46168907 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
46168852 CTGATTAATA
*
46168862 TAATTTTAATATTTTAAAGATT
1 TAATTATAATATTTTAAA-ATT
* *
46168884 TAATTATAATTTTTTCAAATT
1 TAATTATAATATTTTAAAATT
46168905 TAA
1 TAA
46168908 GAACCATTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.54
Consensus pattern (21 bp):
TAATTATAATATTTTAAAATT
Found at i:46169013 original size:21 final size:21
Alignment explanation
Indices: 46168987--46169026 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
46168977 TAAGAAAGAA
46168987 CTCAAAATATAATATTTATTG
1 CTCAAAATATAATATTTATTG
*
46169008 CTCAAAATATAGTATTTAT
1 CTCAAAATATAATATTTAT
46169027 AGCATGATTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.42
Consensus pattern (21 bp):
CTCAAAATATAATATTTATTG
Found at i:46173286 original size:5 final size:5
Alignment explanation
Indices: 46173276--46173300 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
46173266 TTTTAAAAAA
46173276 TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT
46173301 GAAGTTGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:46179411 original size:3 final size:3
Alignment explanation
Indices: 46179403--46179440 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
46179393 ATAATGCGAC
46179403 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
46179441 ATCTAAGTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:46179638 original size:3 final size:3
Alignment explanation
Indices: 46179630--46179819 Score: 104
Period size: 3 Copynumber: 63.7 Consensus size: 3
46179620 TACAAGAAAT
* * *
46179630 ATA ATA ATA ATG GTA ATGA A-A GATA ATA ATA ATT ATA ATA ATA AT-
1 ATA ATA ATA ATA ATA AT-A ATA -ATA ATA ATA ATA ATA ATA ATA ATA
* * * *
46179675 ATCA ATA ATA ATA TTA ATA ATA TTA ATA AGA A-A AAA ATA ATA ATA
1 AT-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
** * * * * * *
46179720 GCA TTA ATA ATA AT- TTA TATA ATA ATG TTA ATA GTA ATA A-A AGA
1 ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * ** *
46179764 ACA ATA A-A ACTT ATA ATA ACA AGG CTA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
46179809 ATA ATA ATA AT
1 ATA ATA ATA AT
46179820 GATGATGATG
Statistics
Matches: 140, Mismatches: 36, Indels: 22
0.71 0.18 0.11
Matches are distributed among these distances:
2 10 0.07
3 122 0.87
4 8 0.06
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:46179824 original size:3 final size:3
Alignment explanation
Indices: 46179818--46179846 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
46179808 AATAATAATA
46179818 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
46179847 AAATTAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:46180473 original size:6 final size:6
Alignment explanation
Indices: 46180456--46180494 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
46180446 CTCTAAAGCA
* **
46180456 AAAAAA AAAAAG AAAAAG AAAGGG AAAAAG AAAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
46180495 CAAAAACCCT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:46186284 original size:56 final size:56
Alignment explanation
Indices: 46186218--46186392 Score: 158
Period size: 56 Copynumber: 3.0 Consensus size: 56
46186208 CCAATTATAA
*
46186218 TTATGATTATAATTATAATCAATATACTAATATTTTAAAGTATGAGATCTATTGTT
1 TTATAATTATAATTATAATCAATATACTAATATTTTAAAGTATGAGATCTATTGTT
* * * * * * * *
46186274 TTA-AATTTATAATCATAATTAAT-TA-TAATAATTCATTAAAAGAATCGCATCACCAATTATAA
1 TTATAA-TTATAATTATAATCAATATACTAAT-ATT--TT-AAAGTAT-G-A-GATCTATTGT-T
*
46186336 TTATGATTATAATTATAATCAATATACTAATATTTTAAAGTATGAGATCTATTGTT
1 TTATAATTATAATTATAATCAATATACTAATATTTTAAAGTATGAGATCTATTGTT
46186392 T
1 T
46186393 CACTGTTAAG
Statistics
Matches: 89, Mismatches: 18, Indels: 24
0.68 0.14 0.18
Matches are distributed among these distances:
54 4 0.04
55 6 0.07
56 19 0.21
57 8 0.09
58 7 0.08
59 2 0.02
60 7 0.08
61 8 0.09
62 18 0.20
63 6 0.07
64 4 0.04
ACGTcount: A:0.42, C:0.07, G:0.07, T:0.43
Consensus pattern (56 bp):
TTATAATTATAATTATAATCAATATACTAATATTTTAAAGTATGAGATCTATTGTT
Found at i:46186294 original size:118 final size:119
Alignment explanation
Indices: 46186156--46186392 Score: 467
Period size: 118 Copynumber: 2.0 Consensus size: 119
46186146 GATGTTGACA
46186156 TAAATTTATAAATCATAATTAATTATAATAATTCATTAAAAGAATCGCATCACCAATTATAATTA
1 TAAATTTATAAATCATAATTAATTATAATAATTCATTAAAAGAATCGCATCACCAATTATAATTA
46186221 TGATTATAATTATAATCAATATACTAATATTTTAAAGTATGAGATCTATTGTTT
66 TGATTATAATTATAATCAATATACTAATATTTTAAAGTATGAGATCTATTGTTT
46186275 TAAATTTAT-AATCATAATTAATTATAATAATTCATTAAAAGAATCGCATCACCAATTATAATTA
1 TAAATTTATAAATCATAATTAATTATAATAATTCATTAAAAGAATCGCATCACCAATTATAATTA
46186339 TGATTATAATTATAATCAATATACTAATATTTTAAAGTATGAGATCTATTGTTT
66 TGATTATAATTATAATCAATATACTAATATTTTAAAGTATGAGATCTATTGTTT
46186393 CACTGTTAAG
Statistics
Matches: 118, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
118 109 0.92
119 9 0.08
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.41
Consensus pattern (119 bp):
TAAATTTATAAATCATAATTAATTATAATAATTCATTAAAAGAATCGCATCACCAATTATAATTA
TGATTATAATTATAATCAATATACTAATATTTTAAAGTATGAGATCTATTGTTT
Found at i:46188221 original size:100 final size:100
Alignment explanation
Indices: 46188010--46188424 Score: 566
Period size: 100 Copynumber: 4.2 Consensus size: 100
46188000 TTTACATTAG
* * *
46188010 GAATCTTACTTCCCTGGC-GATGCAGTGGAGCAGATTAAAGCTACAACGACGAATCTTG-TTCCC
1 GAATCTTACTTCCCTGGCAG-TACAGTAGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCC
* *
46188073 CGACATTGCAA-TTAAATAGATTGAAGCCGCAACGGC
65 CAACATTGCAATTTAAA-AGATTGAAGCCACAACGGC
* * * *
46188109 GAATCTCACTTCCCTGGCAGTACAGTGGAGCAGATTAAAGCTACGACGGCGAATCTTGCTTCCCT
1 GAATCTTACTTCCCTGGCAGTACAGTAGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCC
* * *
46188174 AATATTGCAATTTAAAATATTGAAGCCACAACGGT
66 AACATTGCAATTTAAAAGATTGAAGCCACAACGGC
* * * * *
46188209 GAATCTCACTTCCCTAGCAGTACAGTAGAGCAGATTAAAGTTACGACGGCGAATCTTGCTTCCCT
1 GAATCTTACTTCCCTGGCAGTACAGTAGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCC
* *
46188274 AATATTGCAATTTAAAAGATTGAAGCCACAACGGT
66 AACATTGCAATTTAAAAGATTGAAGCCACAACGGC
* * *
46188309 GAATCTTACTTTCCTGGCAATGCAGTAGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCC
1 GAATCTTACTTCCCTGGCAGTACAGTAGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCC
* * *
46188374 GACATTGTAATTTAAAAGATTGAAGCCGCAACGGC
66 AACATTGCAATTTAAAAGATTGAAGCCACAACGGC
46188409 GAATCTTACTTCCCTG
1 GAATCTTACTTCCCTG
46188425 AGGTTGCAGT
Statistics
Matches: 285, Mismatches: 28, Indels: 5
0.90 0.09 0.02
Matches are distributed among these distances:
99 52 0.18
100 228 0.80
101 5 0.02
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (100 bp):
GAATCTTACTTCCCTGGCAGTACAGTAGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCC
AACATTGCAATTTAAAAGATTGAAGCCACAACGGC
Found at i:46188394 original size:50 final size:50
Alignment explanation
Indices: 46188041--46188425 Score: 254
Period size: 50 Copynumber: 7.7 Consensus size: 50
46188031 GCAGTGGAGC
* * * *
46188041 AGATTAAAGCTACAACGACGAATCTT-GTTCCCCGACATTGCAA-TTAAA
1 AGATTAAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAATTTAAA
* * * * * * * ** **
46188089 TAGATTGAAGCCGCAACGGCGAATCTCACTTCCCTGGCAGTACAGTGGAGC
1 -AGATTAAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAATTTAAA
* * * * *
46188140 AGATTAAAGCTACGACGGCGAATCTTGCTTCCCTAATATTGCAATTTAAA
1 AGATTAAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAATTTAAA
* * * * * * * ** **
46188190 ATATTGAAGCCACAACGGTGAATCTCACTTCCCT-AGCAGTACAGTAGAGC
1 AGATTAAAGCCACAACGGCGAATCTTACTTCCCTGA-CATTGCAATTTAAA
** * * * *
46188240 AGATTAAAGTTACGACGGCGAATCTTGCTTCCCTAATATTGCAATTTAAA
1 AGATTAAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAATTTAAA
* * * * * * ** **
46188290 AGATTGAAGCCACAACGGTGAATCTTACTTTCCTGGCAATGCAGTAGAGC
1 AGATTAAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAATTTAAA
* * * *
46188340 AGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGTAATTTAAA
1 AGATTAAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAATTTAAA
* *
46188390 AGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGA
1 AGATTAAAGCCACAACGGCGAATCTTACTTCCCTGA
46188426 GGTTGCAGTA
Statistics
Matches: 235, Mismatches: 97, Indels: 7
0.69 0.29 0.02
Matches are distributed among these distances:
49 22 0.09
50 211 0.90
51 2 0.01
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.25
Consensus pattern (50 bp):
AGATTAAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAATTTAAA
Found at i:46189620 original size:51 final size:52
Alignment explanation
Indices: 46189557--46189683 Score: 186
Period size: 52 Copynumber: 2.5 Consensus size: 52
46189547 CGGATACCCG
* *
46189557 GTGGCCTACACATAGTACCACCCTTGT-ATCCAAAGCTA-CCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTGA-CCAAAGCTATCCTTCTTCACAAA
* *
46189608 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCAGAAA
1 GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCCTTCTTCACAAA
*
46189660 GTGGCCATCACATAGTACCACACT
1 GTGGCCTTCACATAGTACCACACT
46189684 CGAGTCACTA
Statistics
Matches: 69, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
51 34 0.49
52 35 0.51
ACGTcount: A:0.29, C:0.31, G:0.14, T:0.26
Consensus pattern (52 bp):
GTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCCTTCTTCACAAA
Found at i:46192862 original size:27 final size:26
Alignment explanation
Indices: 46192832--46192890 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
46192822 CGGTGGAGGT
46192832 AAAAAAAACCAAAAACACAAAAACAAA
1 AAAAAAAACCAAAAACACAAAAA-AAA
* * * *
46192859 AAAAAGAACCAAAGAGACAAAAAAAT
1 AAAAAAAACCAAAAACACAAAAAAAA
46192885 AAAAAA
1 AAAAAA
46192891 CCTCTATTGG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.26
27 20 0.74
ACGTcount: A:0.80, C:0.14, G:0.05, T:0.02
Consensus pattern (26 bp):
AAAAAAAACCAAAAACACAAAAAAAA
Found at i:46193352 original size:20 final size:20
Alignment explanation
Indices: 46193323--46193368 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
46193313 CACTTCACTT
46193323 GAAAAAAAGAAACACAAA-AA
1 GAAAAAAAGAAACA-AAAGAA
* *
46193343 GAAAAGAAGAAAGAAAAGAA
1 GAAAAAAAGAAACAAAAGAA
46193363 GAAAAA
1 GAAAAA
46193369 TGAAAAAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
19 3 0.14
20 19 0.86
ACGTcount: A:0.78, C:0.04, G:0.17, T:0.00
Consensus pattern (20 bp):
GAAAAAAAGAAACAAAAGAA
Found at i:46193355 original size:12 final size:12
Alignment explanation
Indices: 46193340--46193366 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
46193330 AGAAACACAA
46193340 AAAGAAAAGAAG
1 AAAGAAAAGAAG
46193352 AAAGAAAAGAAG
1 AAAGAAAAGAAG
46193364 AAA
1 AAA
46193367 AATGAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (12 bp):
AAAGAAAAGAAG
Found at i:46193373 original size:15 final size:14
Alignment explanation
Indices: 46193338--46193382 Score: 53
Period size: 12 Copynumber: 3.4 Consensus size: 14
46193328 AAAGAAACAC
46193338 AAAAAGAAAAGAAG
1 AAAAAGAAAAGAAG
46193352 --AAAGAAAAGAAG
1 AAAAAGAAAAGAAG
46193364 AAAAATGAAAA-AA-
1 AAAAA-GAAAAGAAG
46193377 AAAAAG
1 AAAAAG
46193383 GTGAGGCCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
12 13 0.46
13 5 0.18
14 5 0.18
15 5 0.18
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (14 bp):
AAAAAGAAAAGAAG
Found at i:46193853 original size:108 final size:108
Alignment explanation
Indices: 46193718--46193913 Score: 297
Period size: 108 Copynumber: 1.8 Consensus size: 108
46193708 TTTGTATTCT
* *
46193718 AGCAAAATTTTGTATCTTGATTAATTTGTTCATTTAGAGCTTTGTTCTCAACAAATTTTC-TTCT
1 AGCAAAATTTTGTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATT-T
46193782 TATCCATTGTGATAATCTTTTTCATCTTATTCATCTCATATCTC
65 TATCCATTGTGATAATCTTTTTCATCTTATTCATCTCATATCTC
* **
46193826 AGCAAAA-TTTGCTATCTTGATTGATTTGTTTGTTTAGAGCTTTGCTCTCAACAAAATTTCATTT
1 AGCAAAATTTTG-TATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATTT
* *
46193890 TGTCCATTTTGATAATCTTTTTCA
65 TATCCATTGTGATAATCTTTTTCA
46193914 AGTATTTTTC
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 4 0.05
108 73 0.92
109 2 0.03
ACGTcount: A:0.25, C:0.16, G:0.10, T:0.48
Consensus pattern (108 bp):
AGCAAAATTTTGTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAAATTTCATTTT
ATCCATTGTGATAATCTTTTTCATCTTATTCATCTCATATCTC
Found at i:46194235 original size:20 final size:20
Alignment explanation
Indices: 46194210--46194249 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
46194200 TGACATTCTA
46194210 CATTCATGCAAATATCATTC
1 CATTCATGCAAATATCATTC
*
46194230 CATTCATGTAAATATCATTC
1 CATTCATGCAAATATCATTC
46194250 ATACACATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.35, C:0.23, G:0.05, T:0.38
Consensus pattern (20 bp):
CATTCATGCAAATATCATTC
Found at i:46194503 original size:44 final size:44
Alignment explanation
Indices: 46194419--46194636 Score: 192
Period size: 44 Copynumber: 5.0 Consensus size: 44
46194409 AGTCATTAAA
*** ** *
46194419 GCAGATCTTGTCTTCATGTATTGGCAG-GAAGTGGATCGAAGAT
1 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAT
* * *
46194462 GTAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
1 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAG-AT
*** * * *
46194507 GCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAGAT
1 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAT
* * * *
46194550 AGCA-AGTTTTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT
1 -GCAGA-TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAT
* *
46194594 GCATATCTTGTCTTCCCATATTGGTGGCGAAGTAGATTGAAGA
1 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGA
46194637 AAATAGATCT
Statistics
Matches: 139, Mismatches: 29, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
43 44 0.32
44 74 0.53
45 21 0.15
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (44 bp):
GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAT
Found at i:46194523 original size:88 final size:88
Alignment explanation
Indices: 46194416--46194608 Score: 241
Period size: 88 Copynumber: 2.2 Consensus size: 88
46194406 TGAAGTCATT
* * *
46194416 AAAGCAGATCTTGTCTTCATGTATTGGCAG-GAAGTGGATCGAAGAT-G-TAGATCTTGTCTTCC
1 AAAGCAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCAAAGATAGCAAG-TCTTGTCTTCC
*
46194478 CATACTGGTGGCGAAGTAGATCGAAG
64 CATACTGGTAG-GAAGTAGATCGAAG
* *
46194504 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAAGTTTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAAGTCTTGTCTTCCCA
* *
46194569 TATTGGTAGGAAGTGGATCGAAG
66 TACTGGTAGGAAGTAGATCGAAG
* *
46194592 -ATGCATATCTTGTCTTC
1 AAAGCAGATCTTGTCTTC
46194609 CCATATTGGT
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
87 16 0.17
88 55 0.60
89 19 0.21
90 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (88 bp):
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAAGTCTTGTCTTCCCA
TACTGGTAGGAAGTAGATCGAAG
Found at i:46194626 original size:88 final size:89
Alignment explanation
Indices: 46194416--46194630 Score: 215
Period size: 88 Copynumber: 2.4 Consensus size: 89
46194406 TGAAGTCATT
** * * * *
46194416 AAAGCAGATCTTGTCTTCATGTATTGGCAG-GAAGTGGATCGAAGAT-G-TAGATCTTGTCTTCC
1 AAAGCAGATCTTGTCTTCACATATTGGC-GCGAAGTAGATCAAAGATAGCAAG-TTTTGTCTTCC
*
46194478 CATACTGGTGGCGAAGTAGATCGAAG
64 CATACTGGTAGCGAAGTAGATCGAAG
** * *
46194504 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAAGTTTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCACATATTGGCGCGAAGTAGATCAAAGATAGCAAGTTTTGTCTTCCCA
* *
46194569 TATTGGTAG-GAAGTGGATCGAAG
66 TACTGGTAGCGAAGTAGATCGAAG
* * * *
46194592 -ATGCATATCTTGTCTTCCCATATTGGTGGCGAAGTAGAT
1 AAAGCAGATCTTGTCTTCACATATTGG-CGCGAAGTAGAT
46194631 TGAAGAAAAT
Statistics
Matches: 108, Mismatches: 15, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
87 22 0.20
88 65 0.60
89 19 0.18
90 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (89 bp):
AAAGCAGATCTTGTCTTCACATATTGGCGCGAAGTAGATCAAAGATAGCAAGTTTTGTCTTCCCA
TACTGGTAGCGAAGTAGATCGAAG
Found at i:46194836 original size:50 final size:50
Alignment explanation
Indices: 46194782--46195244 Score: 259
Period size: 50 Copynumber: 9.3 Consensus size: 50
46194772 CACAACGACC
* *
46194782 AATCTTACTTCCCTGGCGGTGCAGTAGAGCAGATTAAAGCTACGACGGTG
1 AATCTTACTTCCCTGGCGTTGCAGTAGAGCAGATTAAAGCTACAACGGTG
* * * * * ** * **
46194832 AATCTTGCTTCTCTGACATTGCAATTA-AAAAGATTGAAGCCGCAACGGTG
1 AATCTTACTTCCCTGGCGTTGC-AGTAGAGCAGATTAAAGCTACAACGGTG
* * * * *
46194882 AATCTTACTTCCCTGGTGATGCTGTAGAGCAGATTAAATCTACGACGGTG
1 AATCTTACTTCCCTGGCGTTGCAGTAGAGCAGATTAAAGCTACAACGGTG
* * * * * * ** **
46194932 AATCTTGCTTCTCCT-ACATTGCAATTTGA-AAGATCGAAGCGGCAACGGTG
1 AATCTTACTTC-CCTGGCGTTGC-AGTAGAGCAGATTAAAGCTACAACGGTG
** * * *
46194982 AATCTTACTTCCCAAGCGGTGCAGTAGAGCAGATTAAAGCTACGATGGTG
1 AATCTTACTTCCCTGGCGTTGCAGTAGAGCAGATTAAAGCTACAACGGTG
** * * ** ** * * ** *
46195032 AATCTTACTTCCCCAGCATTGCAATTTAAAAAATTGAAGCCGCAACGGCG
1 AATCTTACTTCCCTGGCGTTGCAGTAGAGCAGATTAAAGCTACAACGGTG
* * * *
46195082 AATCTTACTTCCATGGCGATACAGTGGAGCTA-ATTAAAGCTACAACGGTG
1 AATCTTACTTCCCTGGCGTTGCAGTAGAGC-AGATTAAAGCTACAACGGTG
* * * * * ** ** * * * *
46195132 AATCTTGCTTCCCCGACATTGCAATCTAAAATATTGAAGCTGCAACAGTG
1 AATCTTACTTCCCTGGCGTTGCAGTAGAGCAGATTAAAGCTACAACGGTG
* * * *
46195182 AATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGGCG
1 AATCTTACTTCCCTGGCGTTGCAGTAGAGCAGATTAAAGCTACAACGGTG
*
46195232 AATCTTGCTTCCC
1 AATCTTACTTCCC
46195245 CGACATTGCA
Statistics
Matches: 286, Mismatches: 119, Indels: 16
0.68 0.28 0.04
Matches are distributed among these distances:
49 9 0.03
50 267 0.93
51 10 0.03
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (50 bp):
AATCTTACTTCCCTGGCGTTGCAGTAGAGCAGATTAAAGCTACAACGGTG
Found at i:46194886 original size:100 final size:100
Alignment explanation
Indices: 46194712--46195281 Score: 691
Period size: 100 Copynumber: 5.7 Consensus size: 100
46194702 TGTAGTGGAT
* * * * *
46194712 CAGATTGAAGCCACAACGGCGAATCTTG-TTCCCCGACATTACAATTAAAAAGATTGAAGCCACA
1 CAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCA
*** *
46194776 ACGACCAATCTTACTTCCCTGGCGGTGCAGTAGAG
66 ACGGTGAATCTTACTTCCCTGGCGATGCAGTAGAG
* * *
46194811 CAGATTAAAGCTACGACGGTGAATCTTGCTTCTCTGACATTGCAATTAAAAAGATTGAAGCCGCA
1 CAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCA
* *
46194876 ACGGTGAATCTTACTTCCCTGGTGATGCTGTAGAG
66 ACGGTGAATCTTACTTCCCTGGCGATGCAGTAGAG
* * * * ** * *
46194911 CAGATTAAATCTACGACGGTGAATCTTGCTTCTCCTACATTGCAATTTGAAAGATCGAAGCGGCA
1 CAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCA
** *
46194976 ACGGTGAATCTTACTTCCCAAGCGGTGCAGTAGAG
66 ACGGTGAATCTTACTTCCCTGGCGATGCAGTAGAG
* * *
46195011 CAGATTAAAGCTACGATGGTGAATCTTACTTCCCC-AGCATTGCAATTTAAAAA-ATTGAAGCCG
1 CAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGA-CATTGCAA-TTAAAAAGATTGAAGCCG
* * * *
46195074 CAACGGCGAATCTTACTTCCATGGCGATACAGTGGAG
64 CAACGGTGAATCTTACTTCCCTGGCGATGCAGTAGAG
* *
46195111 CTA-ATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATCT-AAAATATTGAAGCTG
1 C-AGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAAT-TAAAAAGATTGAAGCCG
* * *
46195174 CAACAGTGAATCTTACTTCCATGGCGATGCAGTGGAG
64 CAACGGTGAATCTTACTTCCCTGGCGATGCAGTAGAG
* * * *
46195211 CAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTAAAACCGCA
1 CAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCA
*
46195276 ATGGTG
66 ACGGTG
46195282 GGGCAGATTA
Statistics
Matches: 407, Mismatches: 55, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
99 32 0.08
100 368 0.90
101 7 0.02
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25
Consensus pattern (100 bp):
CAGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAAAAGATTGAAGCCGCA
ACGGTGAATCTTACTTCCCTGGCGATGCAGTAGAG
Found at i:46195266 original size:50 final size:50
Alignment explanation
Indices: 46194713--46195269 Score: 232
Period size: 50 Copynumber: 11.2 Consensus size: 50
46194703 GTAGTGGATC
* * * * * *
46194713 AGATTGAAGCCACAACGGCGAATCTT-GTTCCCCGACATTACAATTAAAA
1 AGATTAAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTTAAA
* * *** * * ** * ** **
46194762 AGATTGAAGCCACAACGACCAATCTTACTTCCCTGGCGGTGCAGTAGAGC
1 AGATTAAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTTAAA
* * * * *
46194812 AGATTAAAGCTACGACGGTGAATCTTGCTTCTCTGACATTGCAATTAAAA
1 AGATTAAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTTAAA
* ** * ** * *
46194862 AGATTGAAGCCGCAACGGTGAATCTTACTTCCCTGGTGA-TGC--TGTAGAGC
1 AGATTAAAGCTACAACGGTGAATCTTACTTCCC-CGACATTGCAATTTA-A-A
* * * * * *
46194912 AGATTAAATCTACGACGGTGAATCTTGCTTCTCCTACATTGCAATTTGAA
1 AGATTAAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTTAAA
** ** * ** * ** **
46194962 AGATCGAAGCGGCAACGGTGAATCTTACTT-CCCAAGCGGTGCAGTAGAGC
1 AGATTAAAGCTACAACGGTGAATCTTACTTCCCCGA-CATTGCAATTTAAA
* *
46195012 AGATTAAAGCTACGATGGTGAATCTTACTTCCCC-AGCATTGCAATTTAAA
1 AGATTAAAGCTACAACGGTGAATCTTACTTCCCCGA-CATTGCAATTTAAA
* * ** * ** * * * ** **
46195062 AAATTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGA-TACAGTGGAGCT
1 AGATTAAAGCTACAACGGTGAATCTTACTTCCCCGAC-ATTGCAATTTA-AA
* *
46195113 A-ATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATCTAAA
1 AGATTAAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTTAAA
* * * * ** * * ** **
46195162 ATATTGAAGCTGCAACAGTGAATCTTACTTCCATGGCGA-TGCAGTGGAGC
1 AGATTAAAGCTACAACGGTGAATCTTACTTCCCCGAC-ATTGCAATTTAAA
* *
46195212 AGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
1 AGATTAAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTTAAA
46195262 AGATTAAA
1 AGATTAAA
46195270 ACCGCAATGG
Statistics
Matches: 351, Mismatches: 141, Indels: 31
0.67 0.27 0.06
Matches are distributed among these distances:
48 2 0.01
49 32 0.09
50 306 0.87
51 9 0.03
52 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25
Consensus pattern (50 bp):
AGATTAAAGCTACAACGGTGAATCTTACTTCCCCGACATTGCAATTTAAA
Found at i:46195299 original size:74 final size:74
Alignment explanation
Indices: 46195205--46195350 Score: 229
Period size: 74 Copynumber: 2.0 Consensus size: 74
46195195 TGGCGATGCA
* *
46195205 GTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTAAA
1 GTGGAGCAGATTAAAGCTACAACGGCGAATCTTCCTTCCCCAACATTGCAATTTAAAAGATTAAA
46195270 ACCGCAATG
66 ACCGCAATG
* * * *
46195279 GTGGGGCAGATTAAAGCTACAACGGTGAATCTTCCTTCCCCAACATTGCAATTTAAAATATTGAA
1 GTGGAGCAGATTAAAGCTACAACGGCGAATCTTCCTTCCCCAACATTGCAATTTAAAAGATTAAA
*
46195344 GCCGCAA
66 ACCGCAA
46195351 CGGCGAATCT
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
74 65 1.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (74 bp):
GTGGAGCAGATTAAAGCTACAACGGCGAATCTTCCTTCCCCAACATTGCAATTTAAAAGATTAAA
ACCGCAATG
Found at i:46195480 original size:99 final size:98
Alignment explanation
Indices: 46195279--46195554 Score: 376
Period size: 99 Copynumber: 2.8 Consensus size: 98
46195269 AACCGCAATG
* * *
46195279 GTGGGGCAGATTAAAGCTACAACGGTGAATCTTCCTTCCCCAACATTGCAATTTAAA-ATATTGA
1 GTGGGGCAGATTAAAGCTACAACGGTGAATCTT-GTTCCCCGACATTGCAA-TTAAAGAGATTGA
* *
46195343 AGCCGCAACGGCGAATCTACTTCCATGGCGATGCA
64 AGCCACAACGGCGAATCTACTTCCATGGCGATACA
*
46195378 GTGGGGCAGATTAAAGCTACAACGGCGAATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAG
1 GTGGGGCAGATTAAAGCTACAACGGTGAATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAG
* *
46195443 CCACAACGGCGAATCTCATTTCCCTGGC-AGTACA
66 CCACAACGGCGAATCT-ACTTCCATGGCGA-TACA
* * * * *
46195477 GTGGAGCGGATTAAAGCTACGACGGTGAATCTTGCTTCCCTGATATTGCAATTAAAGAGATTGAA
1 GTGGGGCAGATTAAAGCTACAACGGTGAATCTTG-TTCCCCGACATTGCAATTAAAGAGATTGAA
46195542 GCCACAACGGCGA
65 GCCACAACGGCGA
46195555 GATTGAAGCC
Statistics
Matches: 159, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
97 5 0.03
98 39 0.25
99 74 0.47
100 41 0.26
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.23
Consensus pattern (98 bp):
GTGGGGCAGATTAAAGCTACAACGGTGAATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAG
CCACAACGGCGAATCTACTTCCATGGCGATACA
Found at i:46195558 original size:20 final size:20
Alignment explanation
Indices: 46195533--46195572 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
46195523 TGCAATTAAA
46195533 GAGATTGAAGCCACAACGGC
1 GAGATTGAAGCCACAACGGC
46195553 GAGATTGAAGCCACAACGGC
1 GAGATTGAAGCCACAACGGC
46195573 AAATCTTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.25, G:0.30, T:0.10
Consensus pattern (20 bp):
GAGATTGAAGCCACAACGGC
Found at i:46195600 original size:219 final size:218
Alignment explanation
Indices: 46195338--46195770 Score: 688
Period size: 219 Copynumber: 2.0 Consensus size: 218
46195328 AATTTAAAAT
* * * * *
46195338 ATTGAAGCCGCAACGGCGAATCTACTTCCATGGCGATGCAGTGGGGCAGATTAAAGCTACAACGG
1 ATTGAAGCCACAACGGCAAATCTACTTCCATGGCGATGCAGTGGAGCACATTAAAGCTACAACGA
* * *
46195403 CGAATCTTGTTCCCCGACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCATTTCCCT
66 CGAATCTTATTCCCCAACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTCCCT
* * *
46195468 GGCAGTACAGTGGAGCGGATTAAAGCTACGACGGTGAATCTTGCTTCCCTGATATTGCAATT-AA
131 GGCAGTACAGTGGAGCAGATTAAAGCTACGACGGTGAATCTTACTTCCCTAATATTGCAATTCAA
46195532 AGAGATTGAAGCCACAACGGCGAG
196 A-AGATTGAAGCCACAACGGCGAG
*
46195556 ATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGATGCAGTGGAGCACATTAAAGCTACAACG
1 ATTGAAGCCACAACGGCAAATC-TACTTCCATGGCGATGCAGTGGAGCACATTAAAGCTACAACG
* * *
46195621 ATGAATCTTATTCCCCAACATTGCAATTAAAGAGATTGAAGCCGCAACGGCGAATCTCACTTCCT
65 ACGAATCTTATTCCCCAACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTCCC
* *
46195686 TGGCAGTACAGTGGAGTAGATTAAAGCTACGACGGTGAATCTTACTTCCTTAATATTGCAATTCA
130 TGGCAGTACAGTGGAGCAGATTAAAGCTACGACGGTGAATCTTACTTCCCTAATATTGCAATTCA
46195751 AAAGATTGAAGCCACAACGG
195 AAAGATTGAAGCCACAACGG
46195771 TGAATCTCAC
Statistics
Matches: 196, Mismatches: 17, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
218 20 0.10
219 173 0.88
220 3 0.02
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (218 bp):
ATTGAAGCCACAACGGCAAATCTACTTCCATGGCGATGCAGTGGAGCACATTAAAGCTACAACGA
CGAATCTTATTCCCCAACATTGCAATTAAAGAGATTGAAGCCACAACGGCGAATCTCACTTCCCT
GGCAGTACAGTGGAGCAGATTAAAGCTACGACGGTGAATCTTACTTCCCTAATATTGCAATTCAA
AAGATTGAAGCCACAACGGCGAG
Found at i:46195779 original size:100 final size:100
Alignment explanation
Indices: 46195554--46195986 Score: 523
Period size: 100 Copynumber: 4.3 Consensus size: 100
46195544 CACAACGGCG
* * * *
46195554 AGATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGATGCAGTGGAGCACATTAAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGATACAGTGGAGCAGATTAAAGCTACAA
*
46195619 CGATGAATCTTA-TTCCCCAACATTGCAA-TTAAA
66 CGGTGAATCTTACTTCCCCAACATTGCAATTTAAA
* * * * *
46195652 GAGATTGAAGCCGCAACGGCGAATCTCACTTCCTTGGC-AGTACAGTGGAGTAGATTAAAGCTAC
1 -AGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGA-TACAGTGGAGCAGATTAAAGCTAC
* ** * *
46195716 GACGGTGAATCTTACTTCCTTAATATTGCAATTCAAA
64 AACGGTGAATCTTACTTCCCCAACATTGCAATTTAAA
* * * * * *
46195753 AGATTGAAGCCACAACGGTGAATCTCACTTCCCTAG-TAGTACAGTGGAGTAGATTAAAGTTACG
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGA-TACAGTGGAGCAGATTAAAGCTACA
* * *
46195817 ACGGTGAATCTTGCTTCCCTAATATTGCAATTTAAA
65 ACGGTGAATCTTACTTCCCCAACATTGCAATTTAAA
* * * * *
46195853 AGATTGAAGCCACAACGGTGAATCTTACTTTCCTAGCGATGCAGTAGAACAGATTAAAGCTACAA
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGATACAGTGGAGCAGATTAAAGCTACAA
* *
46195918 CGGTGAATCTTGCTTCCCCGACATTGCAATTTAAA
66 CGGTGAATCTTACTTCCCCAACATTGCAATTTAAA
*
46195953 AGATTGAAGCCGCAACGGCGAATCTTACTTCCCT
1 AGATTGAAGCCACAACGGCGAATCTTACTTCCCT
46195987 GAGGTTGCAG
Statistics
Matches: 293, Mismatches: 36, Indels: 9
0.87 0.11 0.03
Matches are distributed among these distances:
98 1 0.00
99 66 0.23
100 221 0.75
101 5 0.02
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (100 bp):
AGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGATACAGTGGAGCAGATTAAAGCTACAA
CGGTGAATCTTACTTCCCCAACATTGCAATTTAAA
Found at i:46195995 original size:50 final size:50
Alignment explanation
Indices: 46195554--46195995 Score: 239
Period size: 50 Copynumber: 8.9 Consensus size: 50
46195544 CACAACGGCG
** * * ** **
46195554 AGATTGAAGCCACAACGGCAAATCTTACTTCCCTGGCGA-TGCAGTGGAGC
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCT-GAGATTGCAATTTAAA
* * * * ** *
46195604 ACATTAAAGCTACAACGATGAATCTTA-TTCCCCAACATTGCAA-TTAAA
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGAGATTGCAATTTAAA
* * * * * * * ** **
46195652 GAGATTGAAGCCGCAACGGCGAATCTCACTTCCTTG-GCAGTACAGTGGAGT
1 -AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGAG-ATTGCAATTTAAA
* * * * * * *
46195703 AGATTAAAGCTACGACGGTGAATCTTACTTCCTTAATATTGCAATTCAAA
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGAGATTGCAATTTAAA
* * * * ** **
46195753 AGATTGAAGCCACAACGGTGAATCTCACTTCCCT-AGTAGTACAGTGGAGT
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGAG-ATTGCAATTTAAA
* ** * * * *
46195803 AGATTAAAGTTACGACGGTGAATCTTGCTTCCCTAATATTGCAATTTAAA
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGAGATTGCAATTTAAA
* * * ** *
46195853 AGATTGAAGCCACAACGGTGAATCTTACTTTCCTAGCGA-TGCAGTAGAAC
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCT-GAGATTGCAATTTAAA
* * * * *
46195903 AGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTTAAA
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGAGATTGCAATTTAAA
* * *
46195953 AGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGAGGTTGCA
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGAGATTGCA
46195996 GTAAAACAGA
Statistics
Matches: 275, Mismatches: 107, Indels: 20
0.68 0.27 0.05
Matches are distributed among these distances:
48 2 0.01
49 32 0.12
50 238 0.87
51 3 0.01
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (50 bp):
AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGAGATTGCAATTTAAA
Found at i:46197140 original size:118 final size:119
Alignment explanation
Indices: 46196990--46197226 Score: 458
Period size: 118 Copynumber: 2.0 Consensus size: 119
46196980 TAGCAGAGAA
46196990 AAGAAGTCTCCCTTTTGTTTTATTTTTATTTTTTTGTGTTCTTTGCAAAAGAATGAAACGGCAGG
1 AAGAAGTCTCCCTTTTGTTTTATTTTTATTTTTTTGTGTTCTTTGCAAAAGAATGAAACGGCAGG
46197055 AGTAAATTTTTTCTTTTATGGTAATTAAAACGGCGCCGTTTAAAGGGGGAGATT
66 AGTAAATTTTTTCTTTTATGGTAATTAAAACGGCGCCGTTTAAAGGGGGAGATT
46197109 AAGAAGTCT-CCTTTTGTTTTATTTTTATTTTTTTGTGTTCTTTGCAAAAGAATGAAACGGCAGG
1 AAGAAGTCTCCCTTTTGTTTTATTTTTATTTTTTTGTGTTCTTTGCAAAAGAATGAAACGGCAGG
*
46197173 AGTAAATTTTTTCTTTTATGGTAATTTAAACGGCGCCGTTTAAAGGGGGAGATT
66 AGTAAATTTTTTCTTTTATGGTAATTAAAACGGCGCCGTTTAAAGGGGGAGATT
46197227 TGCGCATGCT
Statistics
Matches: 117, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
118 108 0.92
119 9 0.08
ACGTcount: A:0.27, C:0.11, G:0.21, T:0.42
Consensus pattern (119 bp):
AAGAAGTCTCCCTTTTGTTTTATTTTTATTTTTTTGTGTTCTTTGCAAAAGAATGAAACGGCAGG
AGTAAATTTTTTCTTTTATGGTAATTAAAACGGCGCCGTTTAAAGGGGGAGATT
Found at i:46209078 original size:28 final size:28
Alignment explanation
Indices: 46209029--46209090 Score: 74
Period size: 28 Copynumber: 2.2 Consensus size: 28
46209019 CATGGGAGGT
46209029 AAAAAAAACCAAAAACACAAAAACAAA-A
1 AAAAAAAACCAAAAACACAAAAA-AAACA
* *
46209057 AAAAAGAACCAAAGGACA-AAAAAAAACA
1 AAAAAAAACCAAA-AACACAAAAAAAACA
46209085 AAAAAA
1 AAAAAA
46209091 CCTCTACTAG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 3 0.10
28 23 0.79
29 3 0.10
ACGTcount: A:0.81, C:0.15, G:0.05, T:0.00
Consensus pattern (28 bp):
AAAAAAAACCAAAAACACAAAAAAAACA
Found at i:46209559 original size:12 final size:12
Alignment explanation
Indices: 46209539--46209581 Score: 52
Period size: 12 Copynumber: 3.4 Consensus size: 12
46209529 AAGAAACGCA
46209539 AAAAGAAAAGAAG
1 AAAA-AAAAGAAG
46209552 AAAAAAAAGAAG
1 AAAAAAAAGAAG
46209564 AAAAATGAAA-AAG
1 AAAAA--AAAGAAG
46209577 AAAAA
1 AAAAA
46209582 GGTGAGGCCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 13 0.46
13 12 0.43
14 3 0.11
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.02
Consensus pattern (12 bp):
AAAAAAAAGAAG
Found at i:46209568 original size:13 final size:14
Alignment explanation
Indices: 46209538--46209582 Score: 53
Period size: 13 Copynumber: 3.4 Consensus size: 14
46209528 AAAGAAACGC
46209538 AAAAAGAAAAGAAG
1 AAAAAGAAAAGAAG
46209552 -AAAA-AAAAGAAG
1 AAAAAGAAAAGAAG
46209564 AAAAATG-AAA-AAG
1 AAAAA-GAAAAGAAG
46209577 AAAAAG
1 AAAAAG
46209583 GTGAGGCCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
12 9 0.32
13 16 0.57
14 3 0.11
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (14 bp):
AAAAAGAAAAGAAG
Found at i:46210705 original size:88 final size:87
Alignment explanation
Indices: 46210597--46210789 Score: 246
Period size: 88 Copynumber: 2.2 Consensus size: 87
46210587 TGAAGTCATT
* *
46210597 AAAGCAGATCTTGTCTTCATGTATTGGCAG-GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCC
1 AAAGCAGATCTTGTCTTCATGTATTGGC-GTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCC
*
46210660 ATACTGGTGGCGAAGTAGATCGAA
65 ATACTGGTAG-GAAGTAGATCGAA
* * *
46210684 GAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTTTTGTCTTCCT
1 -AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCC
* *
46210749 ATATTGGTAGGAAGTGGATCGAA
65 ATACTGGTAGGAAGTAGATCGAA
* * *
46210772 TATGCATATCTTGTCTTC
1 AAAGCAGATCTTGTCTTC
46210790 CCATATTGGT
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
87 16 0.17
88 54 0.59
89 22 0.24
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.32
Consensus pattern (87 bp):
AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCCA
TACTGGTAGGAAGTAGATCGAA
Found at i:46210719 original size:44 final size:44
Alignment explanation
Indices: 46210597--46210815 Score: 185
Period size: 44 Copynumber: 5.0 Consensus size: 44
46210587 TGAAGTCATT
* *
46210597 AAAGCAGATCTTGTCTTCATGTATTGG-CAGGAAGTGGATCGAAG
1 AAAGCAGATCTTGTCTTCATATATTGGTC-GGAAGTAGATCGAAG
* ** * *
46210641 -ATGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAG
1 AAAGCAGATCTTGTCTTCATATATTGGTCG-GAAGTAGATCGAAG
* *
46210685 AAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCAAAG
1 AAAGCAGATCTTGTCTTCATATATTGGTCG-GAAGTAGATCGAAG
* * * * * *
46210729 ATAGCAGGTTTTGTCTTCCTATATTGGTAGGAAGTGGATCGAA-
1 AAAGCAGATCTTGTCTTCATATATTGGTCGGAAGTAGATCGAAG
* * * ** *
46210772 TATGCATATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAA
1 AAAGCAGATCTTGTCTTCATATATTGGTCG-GAAGTAGATCGAA
46210816 CAAAATAGAT
Statistics
Matches: 138, Mismatches: 32, Indels: 10
0.77 0.18 0.06
Matches are distributed among these distances:
43 44 0.32
44 72 0.52
45 22 0.16
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (44 bp):
AAAGCAGATCTTGTCTTCATATATTGGTCGGAAGTAGATCGAAG
Found at i:46210807 original size:88 final size:88
Alignment explanation
Indices: 46210597--46210812 Score: 222
Period size: 88 Copynumber: 2.5 Consensus size: 88
46210587 TGAAGTCATT
** * *
46210597 AAAGCAGATCTTGTCTTCATGTATTGGCAG-GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCA
1 AAAGCAGATCTTGTCTTCACATATTGGC-GCGAAGTAGATCAAAGATGCAGATCTTGTCTTCCCA
*
46210661 TACTGGTGGCGAAGTAGATCGAAG
65 TACTGGTAGCGAAGTAGATCGAAG
** * * * *
46210685 AAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGCAGGTTTTGTCTTCCTA
1 AAAGCAGATCTTGTCTTCACATATTGGCGCGAAGTAGATCAAAGAT-GCAGATCTTGTCTTCCCA
* *
46210750 TATTGGTAG-GAAGTGGATCGAA-
65 TACTGGTAGCGAAGTAGATCGAAG
* * * * *
46210772 TATGCATATCTTGTCTTCCCATATTGGTGGCGAAGTAGATC
1 AAAGCAGATCTTGTCTTCACATATTGG-CGCGAAGTAGATC
46210813 GAACAAAATA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
87 22 0.20
88 65 0.60
89 22 0.20
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (88 bp):
AAAGCAGATCTTGTCTTCACATATTGGCGCGAAGTAGATCAAAGATGCAGATCTTGTCTTCCCAT
ACTGGTAGCGAAGTAGATCGAAG
Found at i:46211086 original size:86 final size:86
Alignment explanation
Indices: 46210941--46211112 Score: 290
Period size: 86 Copynumber: 2.0 Consensus size: 86
46210931 TTACAATTAA
**
46210941 AAAGATTGAAGCCACAACGGTGAATCTTACCTCCCTGGCGGTGCAGTAGAGCAGATTAAAGCTAC
1 AAAGATTGAAGCCACAACGGTGAATCTTACCTCCCTGGCAATGCAGTAGAGCAGATTAAAGCTAC
*
46211006 GATGGTGAATCTTGCTTCTCT
66 GACGGTGAATCTTGCTTCTCT
* * *
46211027 AAAGATTGAAGCCGCAACGGTGAATCTTACTTCCCTGGTAATGCAGTAGAGCAGATTAAAGCTAC
1 AAAGATTGAAGCCACAACGGTGAATCTTACCTCCCTGGCAATGCAGTAGAGCAGATTAAAGCTAC
46211092 GACGGTGAATCTTGCTTCTCT
66 GACGGTGAATCTTGCTTCTCT
46211113 GACATTGCAA
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
86 80 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (86 bp):
AAAGATTGAAGCCACAACGGTGAATCTTACCTCCCTGGCAATGCAGTAGAGCAGATTAAAGCTAC
GACGGTGAATCTTGCTTCTCT
Found at i:46211104 original size:50 final size:50
Alignment explanation
Indices: 46211043--46211513 Score: 237
Period size: 50 Copynumber: 9.4 Consensus size: 50
46211033 TGAAGCCGCA
* *
46211043 ACGGTGAATCTTACTTCCCTGGTAATGCAGTAGAGCAGATTAAAGCTACG
1 ACGGTGAATCTTACTTCCCTGGCAATGCAGTAGAGAAGATTAAAGCTACG
* * * * * * * ** *
46211093 ACGGTGAATCTTGCTTCTCTGACATTGCAATTA-AAAAGATTGAAGCCGCA
1 ACGGTGAATCTTACTTCCCTGGCAATGC-AGTAGAGAAGATTAAAGCTACG
** *
46211143 ACGGTGAATCTTACTTCCCTGGTGATGCAGTAGAGCAGATTAAAGCTACG
1 ACGGTGAATCTTACTTCCCTGGCAATGCAGTAGAGAAGATTAAAGCTACG
* * * * * ** ** *
46211193 ACGGTGAATCTTGCTTCTCC-GACATTGCAATTTGA-AAGATCGAAGCCGCA
1 ACGGTGAATCTTACTTC-CCTGGCAATGC-AGTAGAGAAGATTAAAGCTACG
* ** * *
46211243 ACGGTGAATCTTACTTCCCAGGCGGTGCTGTAGAGTAGATTAAAGCTACG
1 ACGGTGAATCTTACTTCCCTGGCAATGCAGTAGAGAAGATTAAAGCTACG
* ** * * ** * * * ** *
46211293 ATGGTGAATCTTACTTCCCCAGCATTGCAATTTAAAAAATTGAAGCCGCA
1 ACGGTGAATCTTACTTCCCTGGCAATGCAGTAGAGAAGATTAAAGCTACG
* * * * * ** *
46211343 ACGGCGAATCCTACTTCCATGGCGATGCAGTGGAGCTGATTAAAGCTACA
1 ACGGTGAATCTTACTTCCCTGGCAATGCAGTAGAGAAGATTAAAGCTACG
* * * * * * ** * * * * *
46211393 ATGGTGAATCTTGCTTCCCCGACATTGCAATCTAAAATATTGAAGCTGCA
1 ACGGTGAATCTTACTTCCCTGGCAATGCAGTAGAGAAGATTAAAGCTACG
* * * * * *
46211443 ATGGTGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACA
1 ACGGTGAATCTTACTTCCCTGGCAATGCAGTAGAGAAGATTAAAGCTACG
** *
46211493 ACGACGAATCTTGCTTCCCTG
1 ACGGTGAATCTTACTTCCCTG
46211514 ACATTGTAAT
Statistics
Matches: 293, Mismatches: 122, Indels: 12
0.69 0.29 0.03
Matches are distributed among these distances:
49 8 0.03
50 276 0.94
51 9 0.03
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (50 bp):
ACGGTGAATCTTACTTCCCTGGCAATGCAGTAGAGAAGATTAAAGCTACG
Found at i:46211200 original size:100 final size:100
Alignment explanation
Indices: 46211027--46211548 Score: 681
Period size: 100 Copynumber: 5.2 Consensus size: 100
46211017 TTGCTTCTCT
**
46211027 AAAGATTGAAGCCGCAACGGTGAATCTTACTTCCCTGGTAATGCAGTAGAGCAGATTAAAGCTAC
1 AAAGATTGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGATGCAGTAGAGCAGATTAAAGCTAC
* *
46211092 GACGGTGAATCTTGCTTCTCTGACATTGCAATTAA
66 GACGGTGAATCTTGCTTCCCCGACATTGCAATTAA
*
46211127 AAAGATTGAAGCCGCAACGGTGAATCTTACTTCCCTGGTGATGCAGTAGAGCAGATTAAAGCTAC
1 AAAGATTGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGATGCAGTAGAGCAGATTAAAGCTAC
* **
46211192 GACGGTGAATCTTGCTTCTCCGACATTGCAATTTG
66 GACGGTGAATCTTGCTTCCCCGACATTGCAATTAA
* * * * *
46211227 AAAGATCGAAGCCGCAACGGTGAATCTTACTTCCCAGGCGGTGCTGTAGAGTAGATTAAAGCTAC
1 AAAGATTGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGATGCAGTAGAGCAGATTAAAGCTAC
* *
46211292 GATGGTGAATCTTACTTCCCC-AGCATTGCAATTTAA
66 GACGGTGAATCTTGCTTCCCCGA-CATTGCAA-TTAA
* * * * *
46211328 AAA-ATTGAAGCCGCAACGGCGAATCCTACTTCCATGGCGATGCAGTGGAGCTGATTAAAGCTAC
1 AAAGATTGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGATGCAGTAGAGCAGATTAAAGCTAC
* *
46211392 AATGGTGAATCTTGCTTCCCCGACATTGCAATCT-A
66 GACGGTGAATCTTGCTTCCCCGACATTGCAAT-TAA
* * * * *
46211427 AAATATTGAAGCTGCAATGGTGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTAC
1 AAAGATTGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGATGCAGTAGAGCAGATTAAAGCTAC
* ** * * *
46211492 AACGACGAATCTTGCTTCCCTGACATTGTAATTTA
66 GACGGTGAATCTTGCTTCCCCGACATTGCAATTAA
* *
46211527 AAAGATTAAAACCGCAACGGTG
1 AAAGATTGAAGCCGCAACGGTG
46211549 GGGCAGATTA
Statistics
Matches: 374, Mismatches: 42, Indels: 12
0.87 0.10 0.03
Matches are distributed among these distances:
99 7 0.02
100 361 0.97
101 6 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (100 bp):
AAAGATTGAAGCCGCAACGGTGAATCTTACTTCCCTGGCGATGCAGTAGAGCAGATTAAAGCTAC
GACGGTGAATCTTGCTTCCCCGACATTGCAATTAA
Found at i:46211599 original size:74 final size:74
Alignment explanation
Indices: 46211472--46211622 Score: 248
Period size: 74 Copynumber: 2.0 Consensus size: 74
46211462 TGGCGATGCA
* *
46211472 GTGGAGCAGATTAAAGCTACAACGACGAATCTTGCTTCCCTGACATTGTAATTTAAAAGATTAAA
1 GTGGAGCAGATTAAAGCTACAACGACGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTAAA
46211537 ACCGCAACG
66 ACCGCAACG
* * *
46211546 GTGGGGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAA
1 GTGGAGCAGATTAAAGCTACAACGACGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTAAA
*
46211611 GCCGCAACG
66 ACCGCAACG
46211620 GTG
1 GTG
46211623 AATCTACTTC
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (74 bp):
GTGGAGCAGATTAAAGCTACAACGACGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTAAA
ACCGCAACG
Found at i:46211759 original size:99 final size:101
Alignment explanation
Indices: 46211546--46212037 Score: 622
Period size: 99 Copynumber: 4.9 Consensus size: 101
46211536 AACCGCAACG
* * *
46211546 GTGGGGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAA
1 GTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGACATTGCAATTAAAAAGATTGAA
* * *
46211611 GCCGCAACGGTGAATCT-ACTTCCATGGC-GATGCA
66 GCCGCAACGGCGAATCTCACTTCCCTGGCAGATACA
* *
46211645 GTAGG-GCAGATTAAAGCTATAACGGCGAATCTTG-TTCCCCGACATTGCAATTAAAAAGATTGA
1 GT-GGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGACATTGCAATTAAAAAGATTGA
* *
46211708 AGCCACAACGGCGAATCTCATTTCCCTGGCAG-TACA
65 AGCCGCAACGGCGAATCTCACTTCCCTGGCAGATACA
* * * * *
46211744 GTGGAGCGGATTAAAGCTACGACGGTGAATCTTGCTTCCCTGATATTGCAATTAAACAGATTGAA
1 GTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGACATTGCAATTAAAAAGATTGAA
* *
46211809 GCCGCAACGGCGAATCTTACTTCCCTGGC-GATATA
66 GCCGCAACGGCGAATCTCACTTCCCTGGCAGATACA
* * * * *
46211844 GTTGAGCAGATTAAAGCTACAACGGTGAATCTT-ATTCCCTGGCATTGCAATTAAAGAGATTGAA
1 GTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGACATTGCAATTAAAAAGATTGAA
*
46211908 GTCGCAACGGCGAATCTCACTTCCCTGGCAG-TACA
66 GCCGCAACGGCGAATCTCACTTCCCTGGCAGATACA
* * * * * * * *
46211943 GTGGAGTAGATTAAAGCTACGACGTCGAATCTTGCTTCCTTAATATTACAATTTAAAAGATTGAA
1 GTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGACATTGCAATTAAAAAGATTGAA
* *
46212008 GCCACAACGGTGAATCTCACTTCCCTGGCA
66 GCCGCAACGGCGAATCTCACTTCCCTGGCA
46212038 ATGTCGAGGA
Statistics
Matches: 341, Mismatches: 44, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
98 46 0.13
99 155 0.45
100 140 0.41
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (101 bp):
GTGGAGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCTGACATTGCAATTAAAAAGATTGAA
GCCGCAACGGCGAATCTCACTTCCCTGGCAGATACA
Found at i:46211776 original size:372 final size:373
Alignment explanation
Indices: 46211177--46211904 Score: 997
Period size: 372 Copynumber: 2.0 Consensus size: 373
46211167 ATGCAGTAGA
* * * *
46211177 GCAGATTAAAGCTACGACGGTGAATCTTGCTTCTCCGACATTGCAATTTGAAAGATCGAAGCCGC
1 GCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATCGAAGCCGC
* * * * * *
46211242 AACGGTGAATCTTACTTCCCAGGCGGTGCTGTAGAGTAGATTAAAGCTACGATGGTGAATCTTAC
66 AACGGTGAATCTTACTTCCCAGGCGATGCAGTAGAGCAGATTAAAGCTACAACGGCGAATCTTAC
* *
46211307 TTCCCCAGCATTGCAATTTAAAAAATTGAAGCCGCAACGGCGAATCCTACTTCCATGGCGATGCA
131 TTCCCCAGCATTGCAATTTAAAAAATTGAAGCCACAACGGCGAATCCTACTTCCATGGCGATACA
* * *
46211372 GTGGAGCTGATTAAAGCTACAATGGTGAATCTTGCTTCCCCGACATTGCAATCTAAA-ATATTGA
196 GTGGAGCGGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAAT-TAAACAGATTGA
* * * *
46211436 AGCTGCAATGGTGAATCTTACTTCCATGGCGATGCAGTGGAGCAGATTAAAGCTACAACGACGAA
260 AGCCGCAACGGCGAATCTTACTTCCATGGCGATACAGTGGAGCAGATTAAAGCTACAACGACGAA
* *
46211501 TCTTGCTTCCCTGACATTGTAATTTAAA-AGATTAAAACCGCAACGGTGGG
325 TCTT-ATTCCCTGACATTGCAA-TTAAAGAGATTAAAACCGCAACGGTGGG
*
46211551 GCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAAGCCGC
1 GCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATCGAAGCCGC
* *
46211616 AACGGTGAATC-TACTT-CCATGGCGATGCAGTAGGGCAGATTAAAGCTATAACGGCGAATCTT-
66 AACGGTGAATCTTACTTCCCA-GGCGATGCAGTAGAGCAGATTAAAGCTACAACGGCGAATCTTA
* * *
46211678 GTTCCCC-GACATTGCAA-TTAAAAAGATTGAAGCCACAACGGCGAAT-CTCATTTCCCTGGC-A
130 CTTCCCCAG-CATTGCAATTTAAAAA-ATTGAAGCCACAACGGCGAATCCT-ACTTCCATGGCGA
* * *
46211739 GTACAGTGGAGCGGATTAAAGCTACGACGGTGAATCTTGCTTCCCTGATATTGCAATTAAACAGA
192 -TACAGTGGAGCGGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAACAGA
* * * *
46211804 TTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGATATAGTTGAGCAGATTAAAGCTACAACGG
256 TTGAAGCCGCAACGGCGAATCTTACTTCCATGGCGATACAGTGGAGCAGATTAAAGCTACAACGA
* *
46211869 TGAATCTTATTCCCTGGCATTGCAATTAAAGAGATT
321 CGAATCTTATTCCCTGACATTGCAATTAAAGAGATT
46211905 GAAGTCGCAA
Statistics
Matches: 311, Mismatches: 36, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
370 5 0.02
371 34 0.11
372 162 0.52
373 39 0.13
374 71 0.23
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (373 bp):
GCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATCGAAGCCGC
AACGGTGAATCTTACTTCCCAGGCGATGCAGTAGAGCAGATTAAAGCTACAACGGCGAATCTTAC
TTCCCCAGCATTGCAATTTAAAAAATTGAAGCCACAACGGCGAATCCTACTTCCATGGCGATACA
GTGGAGCGGATTAAAGCTACAACGGTGAATCTTGCTTCCCCGACATTGCAATTAAACAGATTGAA
GCCGCAACGGCGAATCTTACTTCCATGGCGATACAGTGGAGCAGATTAAAGCTACAACGACGAAT
CTTATTCCCTGACATTGCAATTAAAGAGATTAAAACCGCAACGGTGGG
Found at i:46211824 original size:50 final size:50
Alignment explanation
Indices: 46211552--46212034 Score: 264
Period size: 50 Copynumber: 9.7 Consensus size: 50
46211542 AACGGTGGGG
* * * *
46211552 CAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAA
1 CAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAA-TTAAA
* * * * * **
46211603 -AGATTGAAGCCGCAACGGTGAATC-TACTTCCATGGCGA-TGC-AGTAGGG
1 CAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGAC-ATTGCAATTA-AA
* * * * *
46211651 CAGATTAAAGCTATAACGGCGAATCTT-GTTCCCCGACATTGCAATTAAA
1 CAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAATTAAA
* * * * * * * ** *
46211700 AAGATTGAAGCCACAACGGCGAATCTCATTTCCCTGGCAGTACAGTGGAG
1 CAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAATTAAA
* * * * * * *
46211750 CGGATTAAAGCTACGACGGTGAATCTTGCTTCCCTGATATTGCAATTAAA
1 CAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAATTAAA
* * * * *
46211800 CAGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCGATAT--AGTTGAG
1 CAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGAC-AT-TGCAATTAAA
* * * *
46211850 CAGATTAAAGCTACAACGGTGAATCTTA-TTCCCTGGCATTGCAATTAAA
1 CAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAATTAAA
* * * * * * * * ** *
46211899 GAGATTGAAGTCGCAACGGCGAATCTCACTTCCCTGGCAGTACAGTGGAG
1 CAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAATTAAA
* * * * * * * * * *
46211949 TAGATTAAAGCTACGACGTCGAATCTTGCTTCCTTAATATTACAATTTAAA
1 CAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAA-TTAAA
* *
46212000 -AGATTGAAGCCACAACGGTGAATCTCACTTCCCTG
1 CAGATTGAAGCCACAACGGCGAATCTTACTTCCCTG
46212035 GCAATGTCGA
Statistics
Matches: 306, Mismatches: 113, Indels: 27
0.69 0.25 0.06
Matches are distributed among these distances:
47 3 0.01
48 4 0.01
49 95 0.31
50 199 0.65
51 4 0.01
52 1 0.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.25
Consensus pattern (50 bp):
CAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGACATTGCAATTAAA
Found at i:46211906 original size:199 final size:199
Alignment explanation
Indices: 46211546--46212036 Score: 700
Period size: 199 Copynumber: 2.5 Consensus size: 199
46211536 AACCGCAACG
* * * * *
46211546 GTGGGGCAGATTAAAGCTACAACGGCGAATCTTGCTTCCCCGACATTGCAATTTAAAAGATTGAA
1 GTGGAGCAGATTAAAGCTACGACGGTGAATCTTGCTTCCCTGATATTGCAATTTAAAAGATTGAA
* * * *
46211611 GCCGCAACGGTGAATC-TACTTCCATGGCGATGCAGTAGGGCAGATTAAAGCTATAACGGCGAAT
66 GCCGCAACGGTGAATCTTACTTCCCTGGCGATACAGTAGAGCAGATTAAAGCTACAACGGCGAAT
* *
46211675 CTTGTTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTCATTTCCCTGGCAG
131 CTTATTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTCACTTCCCTGGCAG
46211740 TACA
196 TACA
*
46211744 GTGGAGCGGATTAAAGCTACGACGGTGAATCTTGCTTCCCTGATATTGCAA-TTAAACAGATTGA
1 GTGGAGCAGATTAAAGCTACGACGGTGAATCTTGCTTCCCTGATATTGCAATTTAAA-AGATTGA
* * * *
46211808 AGCCGCAACGGCGAATCTTACTTCCCTGGCGATATAGTTGAGCAGATTAAAGCTACAACGGTGAA
65 AGCCGCAACGGTGAATCTTACTTCCCTGGCGATACAGTAGAGCAGATTAAAGCTACAACGGCGAA
* * * * *
46211873 TCTTATTCCCTGGCATTGCAATTAAAGAGATTGAAGTCGCAACGGCGAATCTCACTTCCCTGGCA
130 TCTTATTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTCACTTCCCTGGCA
46211938 GTACA
195 GTACA
* * * *
46211943 GTGGAGTAGATTAAAGCTACGAC-GTCGAATCTTGCTTCCTTAATATTACAATTTAAAAGATTGA
1 GTGGAGCAGATTAAAGCTACGACGGT-GAATCTTGCTTCCCTGATATTGCAATTTAAAAGATTGA
* *
46212007 AGCCACAACGGTGAATCTCACTTCCCTGGC
65 AGCCGCAACGGTGAATCTTACTTCCCTGGC
46212037 AATGTCGAGG
Statistics
Matches: 260, Mismatches: 29, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
197 5 0.02
198 70 0.27
199 180 0.69
200 5 0.02
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (199 bp):
GTGGAGCAGATTAAAGCTACGACGGTGAATCTTGCTTCCCTGATATTGCAATTTAAAAGATTGAA
GCCGCAACGGTGAATCTTACTTCCCTGGCGATACAGTAGAGCAGATTAAAGCTACAACGGCGAAT
CTTATTCCCCGACATTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTCACTTCCCTGGCAG
TACA
Found at i:46222603 original size:51 final size:52
Alignment explanation
Indices: 46222540--46222664 Score: 198
Period size: 51 Copynumber: 2.4 Consensus size: 52
46222530 CGGATACCCG
* **
46222540 GTGGCCTACACATAGTACCACCTTTGTAACCAAAGCTA-CCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACAGTTGTAACCAAAGCTATCCTTCTTCACAAA
* *
46222591 GTGGCCTTCACATAGTACCACAGTTGTGACCAAAGCTATCTTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACAGTTGTAACCAAAGCTATCCTTCTTCACAAA
46222643 GTGGCCTTCACATAGTACCACA
1 GTGGCCTTCACATAGTACCACA
46222665 CTTGAGTCAC
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
51 34 0.50
52 34 0.50
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (52 bp):
GTGGCCTTCACATAGTACCACAGTTGTAACCAAAGCTATCCTTCTTCACAAA
Found at i:46224068 original size:51 final size:51
Alignment explanation
Indices: 46223893--46224060 Score: 216
Period size: 52 Copynumber: 3.3 Consensus size: 51
46223883 TAGTGACTCT
* * * *
46223893 AGTGTGGCACTATGTGAAGGCCACTTTGAGAAG-AGCTAGC-TTGATCACA
1 AGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCACA
*
46223942 AGTGTGGTACTATGGGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCACA
1 AGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCACA
* *
46223994 AGTGTGGTACTATGTGAAGGTCACTTTGTGAAGAAGGTAGCTTTGG-CTACA
1 AGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTC-ACA
* *
46224045 AGGGTTGTACTATGTG
1 AGTGTGGTACTATGTG
46224061 CAGGTCACCG
Statistics
Matches: 105, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
49 30 0.29
50 1 0.01
51 35 0.33
52 39 0.37
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.29
Consensus pattern (51 bp):
AGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCACA
Found at i:46230430 original size:41 final size:41
Alignment explanation
Indices: 46230349--46230427 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 41
46230339 ACCCCACTCA
* * *
46230349 AAAGCAACCCCAAACTATAAGTAAATGCCTTGATTAAAAGT
1 AAAGCAACCCCAAACTATAACTAAATACCTTAATTAAAAGT
*
46230390 AAAGCAA-CCCTAACTATAACTAAATACCTTAATTAAAA
1 AAAGCAACCCCAAACTATAACTAAATACCTTAATTAAAA
46230428 AGTGAATCCT
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
40 27 0.79
41 7 0.21
ACGTcount: A:0.49, C:0.20, G:0.08, T:0.23
Consensus pattern (41 bp):
AAAGCAACCCCAAACTATAACTAAATACCTTAATTAAAAGT
Found at i:46240197 original size:6 final size:6
Alignment explanation
Indices: 46240186--46240214 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
46240176 CTTTTATTTA
46240186 ACATAC ACATAC ACATAC ACATAC ACATA
1 ACATAC ACATAC ACATAC ACATAC ACATA
46240215 TTTCTGGATC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.52, C:0.31, G:0.00, T:0.17
Consensus pattern (6 bp):
ACATAC
Found at i:46244959 original size:14 final size:14
Alignment explanation
Indices: 46244940--46244970 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
46244930 ATTCAAACTT
46244940 TTTTTTAAAATTTA
1 TTTTTTAAAATTTA
*
46244954 TTTTTTGAAATTTA
1 TTTTTTAAAATTTA
46244968 TTT
1 TTT
46244971 ANNNNNNNNN
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.68
Consensus pattern (14 bp):
TTTTTTAAAATTTA
Found at i:46245069 original size:14 final size:14
Alignment explanation
Indices: 46245050--46245080 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
46245040 NNNNNNNNNT
46245050 AAATAAATTTCAAA
1 AAATAAATTTCAAA
*
46245064 AAATAAATTTTAAA
1 AAATAAATTTCAAA
46245078 AAA
1 AAA
46245081 AAGTTTGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (14 bp):
AAATAAATTTCAAA
Found at i:46246969 original size:3 final size:3
Alignment explanation
Indices: 46246961--46246986 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
46246951 CATATAACGC
46246961 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
46246987 CCGTGATAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:46247238 original size:17 final size:19
Alignment explanation
Indices: 46247216--46247250 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
46247206 GATTTTATTT
46247216 TATTAA-AA-ATTAAAATA
1 TATTAATAAGATTAAAATA
46247233 TATTAATAAGATTAAAAT
1 TATTAATAAGATTAAAAT
46247251 TAAATAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 2 0.12
19 8 0.50
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (19 bp):
TATTAATAAGATTAAAATA
Found at i:46247687 original size:24 final size:26
Alignment explanation
Indices: 46247651--46247700 Score: 77
Period size: 24 Copynumber: 2.0 Consensus size: 26
46247641 AATTAAAAAT
*
46247651 ATTTAACTTTTACTAGTTTAT-TATA
1 ATTTAACTTTTACTAGTATATATATA
46247676 ATTTAA-TTTTACTAGTATATATATA
1 ATTTAACTTTTACTAGTATATATATA
46247701 TATTCTATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 13 0.57
25 10 0.43
ACGTcount: A:0.36, C:0.06, G:0.04, T:0.54
Consensus pattern (26 bp):
ATTTAACTTTTACTAGTATATATATA
Found at i:46279222 original size:38 final size:36
Alignment explanation
Indices: 46279161--46279238 Score: 86
Period size: 37 Copynumber: 2.1 Consensus size: 36
46279151 ATAACCATGA
* *
46279161 TTTAACTTTAAAAATTTATTTTTATATAATAATAATAT
1 TTTAACTTTAAAAATATATTTTTACA-AATAA-AATAT
* *
46279199 TTTAA-TTTTAAAATATATATTTTACAAATTAAATAT
1 TTTAACTTTAAAAATATAT-TTTTACAAATAAAATAT
46279235 TTTA
1 TTTA
46279239 TTCACATTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
36 9 0.26
37 15 0.43
38 11 0.31
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (36 bp):
TTTAACTTTAAAAATATATTTTTACAAATAAAATAT
Found at i:46279555 original size:31 final size:31
Alignment explanation
Indices: 46279517--46279577 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
46279507 ACTACAAAAA
*
46279517 TAGTCACTTTTGTTTG-CCTCATATTACATTT
1 TAGTCACTTATGTTTGACCTCAT-TTACATTT
*
46279548 TAGTCACTTATGTTTGACGTCATTTACATT
1 TAGTCACTTATGTTTGACCTCATTTACATT
46279578 GTCGTTTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
31 22 0.81
32 5 0.19
ACGTcount: A:0.21, C:0.18, G:0.11, T:0.49
Consensus pattern (31 bp):
TAGTCACTTATGTTTGACCTCATTTACATTT
Found at i:46289151 original size:384 final size:383
Alignment explanation
Indices: 46288436--46289189 Score: 1078
Period size: 384 Copynumber: 2.0 Consensus size: 383
46288426 AAACAAAGTT
46288436 TAAACCAAGCTACCTGTGAGTGTCAAATACAAGTCTAAGTCCTACATAGGTATGTTCAATATTCT
1 TAAACCAAGCTACCTGTGAGTGTCAAATACAAGTCTAAGTCCTACATAGGTATGTTCAATATTCT
* * * * *
46288501 TTTTTCTAATTTTTAAAATATATTTGGGGAACCGTATCCTCGTATCCATTTTTCAATGTGTTGGA
66 ATTTTCTAATTTTTAAAATATATTTGGGGAACCATATCCTCGTATCCATGTCTCAATGTGTCGGA
** * * * *
46288566 TATGGGTGTTGGGCCCAACACACTTCAAAGAAACTGAAAAATCTGAGCAACATAGCGAACTACAA
131 TATGGGTGCAGGACACAACACACTTCAAAGAAAATGAAAAATCTGAGCAACATAGCAAACTACAA
* * *
46288631 CACCAGTTATGACATCACATAAACGAAGTTGAATCTAAAACGGCACCATTGACTTCTCATGGAAC
196 CACCAGTTATGACATCACATAAACGAAGTTGAATCTAAAACAGCAACATTGACTTCTCATGAAAC
* ** *
46288696 ATAGGAGAAAAAGAATAGTGAAAGAGAAATTACATAATTAATCAAATAATTAGCAATTACATATC
261 ATAAGAGAAAAAGAATAGT-AAAGAGAAAGGACATAATTAATAAAATAATTAGCAATTACATATC
*
46288761 AGTTTCTTCTTTTCTTTGTACTGTGAAAAGCCCATGCAGACAAAGCTTATATCCACATC
325 AGTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAGCTTATATCCACATC
* *
46288820 TAAACCAGGCTACCTGTGAGTGTCAAATACAAGTCTGAGTCCTACATAGGTATGTTC-A-A-T-T
1 TAAACCAAGCTACCTGTGAGTGTCAAATACAAGTCTAAGTCCTACATAGGTATGTTCAATATTCT
* * *
46288881 ATTTTCTAAATTTTT-AAATATATTTGGGGAACCATATGCTTGTATCCATGTCTGAATGTGTCGG
66 ATTTTCT-AATTTTTAAAATATATTTGGGGAACCATATCCTCGTATCCATGTCTCAATGTGTCGG
*
46288945 ATATGGGTGCAGGACAC-A-ACACTTCAAAGAAAATGAAAACT-TGGAGCAACATAGCAAACTAC
130 ATATGGGTGCAGGACACAACACACTTCAAAGAAAATGAAAAATCT-GAGCAACATAGCAAACTAC
*
46289007 AACACCAGTTATGACATCACATAAATGAAGTTGAAATCTAAAACAGCAACATTGACTTCTCATGA
194 AACACCAGTTATGACATCACATAAACGAAGTTG-AATCTAAAACAGCAACATTGACTTCTCATGA
*
46289072 AACATAAGAGAACAAA-AATAGT-AAGAGAAAGGATATAATTTTAATAAAATAATTAGCTATCAT
258 AACATAAGAGAA-AAAGAATAGTAAAGAGAAAGGACATAA--TTAATAAAATAATTAGC-A--A-
*
46289135 TTTACATATTAGTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAG
316 -TTACATATCAGTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAG
46289190 TAGAAAGCTT
Statistics
Matches: 331, Mismatches: 28, Indels: 22
0.87 0.07 0.06
Matches are distributed among these distances:
377 14 0.04
378 71 0.21
379 62 0.19
380 66 0.20
381 8 0.02
382 2 0.01
383 1 0.00
384 107 0.32
ACGTcount: A:0.37, C:0.17, G:0.16, T:0.30
Consensus pattern (383 bp):
TAAACCAAGCTACCTGTGAGTGTCAAATACAAGTCTAAGTCCTACATAGGTATGTTCAATATTCT
ATTTTCTAATTTTTAAAATATATTTGGGGAACCATATCCTCGTATCCATGTCTCAATGTGTCGGA
TATGGGTGCAGGACACAACACACTTCAAAGAAAATGAAAAATCTGAGCAACATAGCAAACTACAA
CACCAGTTATGACATCACATAAACGAAGTTGAATCTAAAACAGCAACATTGACTTCTCATGAAAC
ATAAGAGAAAAAGAATAGTAAAGAGAAAGGACATAATTAATAAAATAATTAGCAATTACATATCA
GTTTCTTCTTTTCTTTGTACTGTAAAAAGCCCATGCAGACAAAGCTTATATCCACATC
Found at i:46291686 original size:36 final size:36
Alignment explanation
Indices: 46291646--46291717 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
46291636 ATAAATGGTC
*
46291646 ACAAGAGTATCCAATGTATTGCAACCAAGCAACACA
1 ACAAGAGTATCCAATGTATTGCAACCAAACAACACA
*
46291682 ACAAGAGTATCTAATGTATTGCAACCAAACAACACA
1 ACAAGAGTATCCAATGTATTGCAACCAAACAACACA
46291718 GCCAAGCAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.46, C:0.24, G:0.12, T:0.18
Consensus pattern (36 bp):
ACAAGAGTATCCAATGTATTGCAACCAAACAACACA
Found at i:46292048 original size:62 final size:63
Alignment explanation
Indices: 46291945--46292069 Score: 180
Period size: 62 Copynumber: 2.0 Consensus size: 63
46291935 ATTATTGTAC
* * * * *
46291945 TTTAATTTATTAAAGTATGAGTAAGTTATGGTTTACTAGATGAGTCATCGTTC-TTTATAAAT
1 TTTAATTTATTAAAGTATGAGTAAGTCATAGTTTACGAGATGAGTCATCATCCTTTTATAAAT
* *
46292007 TTTACTTTATTAAAGTATGAGTGAGTCATAGTTTACGAGATGAGTCATCATCCTTTTATAAAT
1 TTTAATTTATTAAAGTATGAGTAAGTCATAGTTTACGAGATGAGTCATCATCCTTTTATAAAT
46292070 CATTGAACTT
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
62 46 0.84
63 9 0.16
ACGTcount: A:0.32, C:0.09, G:0.16, T:0.43
Consensus pattern (63 bp):
TTTAATTTATTAAAGTATGAGTAAGTCATAGTTTACGAGATGAGTCATCATCCTTTTATAAAT
Found at i:46292782 original size:17 final size:17
Alignment explanation
Indices: 46292757--46292789 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
46292747 CACGTCATAT
46292757 TTACACTTTCATTTTGG
1 TTACACTTTCATTTTGG
*
46292774 TTACGCTTTCATTTTG
1 TTACACTTTCATTTTG
46292790 ATCACCCCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.18, G:0.12, T:0.55
Consensus pattern (17 bp):
TTACACTTTCATTTTGG
Found at i:46293710 original size:19 final size:18
Alignment explanation
Indices: 46293671--46293711 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
46293661 TTCGATGTAC
*
46293671 TATTTTTAAATTTATTGA
1 TATTTTTAAATTTATTCA
*
46293689 TATTTTTAAATATTTTTCA
1 TATTTTTAAAT-TTATTCA
46293708 TATT
1 TATT
46293712 CAAATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (18 bp):
TATTTTTAAATTTATTCA
Found at i:46295785 original size:21 final size:21
Alignment explanation
Indices: 46295759--46295801 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
46295749 GGAATGAGGC
46295759 TTCAAGACAGGTAGAAACCTA
1 TTCAAGACAGGTAGAAACCTA
46295780 TTCAAGACAGGTAGAAACCTA
1 TTCAAGACAGGTAGAAACCTA
46295801 T
1 T
46295802 CTTATCCAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.21
Consensus pattern (21 bp):
TTCAAGACAGGTAGAAACCTA
Found at i:46297048 original size:19 final size:19
Alignment explanation
Indices: 46297024--46297064 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
46297014 TATTTTAAAG
46297024 TTATTTAGGTAGATAAATC
1 TTATTTAGGTAGATAAATC
46297043 TTATTTAGGTAGATAAATC
1 TTATTTAGGTAGATAAATC
46297062 TTA
1 TTA
46297065 GAATAAATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.37, C:0.05, G:0.15, T:0.44
Consensus pattern (19 bp):
TTATTTAGGTAGATAAATC
Found at i:46307445 original size:14 final size:14
Alignment explanation
Indices: 46307426--46307452 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
46307416 AAATTTATCA
46307426 ATTTTTTTAAAAAT
1 ATTTTTTTAAAAAT
46307440 ATTTTTTTAAAAA
1 ATTTTTTTAAAAA
46307453 ATCACCATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
ATTTTTTTAAAAAT
Found at i:46308572 original size:7 final size:7
Alignment explanation
Indices: 46308562--46308591 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
46308552 TTTAAATGTC
46308562 TTTTATT
1 TTTTATT
46308569 TTTTATT
1 TTTTATT
46308576 TTATTATT
1 TT-TTATT
46308584 TTTTATT
1 TTTTATT
46308591 T
1 T
46308592 GGGAAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
7 15 0.68
8 7 0.32
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (7 bp):
TTTTATT
Found at i:46318380 original size:107 final size:109
Alignment explanation
Indices: 46318234--46318467 Score: 325
Period size: 109 Copynumber: 2.2 Consensus size: 109
46318224 TTCCTTTTGG
* * *
46318234 CATATTCTCAACATAAAATGCTCATTTATATTTACATTTACTTTTCCTA-TA-ATATATTTGTGG
1 CATATTCTTAAAATAAAATGCTCATTTATATTTACATTTACTTTTCCAATTATATATATTTGT-G
** * *
46318297 GAA-GTAATGGCATTTGGTCATTGAAATTAGTGGTAAATAGTGTT
65 GAAGGTAACCGCATTTGGTCATTCAAATTAGTGGTAAATAATGTT
46318341 CATATTCTTAAAATAAAATGCTCATTTATATTTACATTTACTTTTCCAATTATATATATTTGTGG
1 CATATTCTTAAAATAAAATGCTCATTTATATTTACATTTACTTTTCCAATTATATATATTTGTGG
* * *
46318406 AAGGTAGCCGCATTTGGTGATTCAACTTAGTGGTAAATAATGTT
66 AAGGTAACCGCATTTGGTCATTCAAATTAGTGGTAAATAATGTT
46318450 CATAGTT-TTAAAA-AAAAT
1 CATA-TTCTTAAAATAAAAT
46318468 AATATTATTA
Statistics
Matches: 113, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
107 46 0.41
108 11 0.10
109 54 0.48
110 2 0.02
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.41
Consensus pattern (109 bp):
CATATTCTTAAAATAAAATGCTCATTTATATTTACATTTACTTTTCCAATTATATATATTTGTGG
AAGGTAACCGCATTTGGTCATTCAAATTAGTGGTAAATAATGTT
Found at i:46325386 original size:3 final size:3
Alignment explanation
Indices: 46325378--46325411 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
46325368 CAAAATTTAA
46325378 AAT AAT AAT AAT AAT -AT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
46325412 ACATACACTC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 28 0.93
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:46325398 original size:14 final size:14
Alignment explanation
Indices: 46325379--46325407 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
46325369 AAAATTTAAA
46325379 ATAATAATAATAAT
1 ATAATAATAATAAT
46325393 ATAATAATAATAAT
1 ATAATAATAATAAT
46325407 A
1 A
46325408 ATAAACATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
ATAATAATAATAAT
Found at i:46325400 original size:17 final size:17
Alignment explanation
Indices: 46325378--46325410 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
46325368 CAAAATTTAA
46325378 AATAATAATAATAATAT
1 AATAATAATAATAATAT
46325395 AATAATAATAATAATA
1 AATAATAATAATAATA
46325411 AACATACACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
AATAATAATAATAATAT
Found at i:46330164 original size:32 final size:30
Alignment explanation
Indices: 46330090--46330164 Score: 82
Period size: 32 Copynumber: 2.5 Consensus size: 30
46330080 TAAGTTTTAG
* *
46330090 GAGTTTAATTGAA-ATTTTAAAAATTTTAA
1 GAGTTTAATTGAATATTTAAAAAATTTGAA
*
46330119 GGGTTTTAA-TGAATATTCTAAAAAAATTTGAA
1 GAG-TTTAATTGAATATT-T-AAAAAATTTGAA
46330151 GAGTTTAATTGAAT
1 GAGTTTAATTGAAT
46330165 TTTTTTGAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
29 6 0.16
30 8 0.22
31 6 0.16
32 17 0.46
ACGTcount: A:0.43, C:0.01, G:0.15, T:0.41
Consensus pattern (30 bp):
GAGTTTAATTGAATATTTAAAAAATTTGAA
Found at i:46331031 original size:19 final size:19
Alignment explanation
Indices: 46331007--46331044 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
46330997 TTCCCTTTTA
*
46331007 CTAAAAAATTTAATTAATT
1 CTAAAAAATATAATTAATT
46331026 CTAAAAAATATAATTAATT
1 CTAAAAAATATAATTAATT
46331045 TTTTTTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (19 bp):
CTAAAAAATATAATTAATT
Found at i:46331174 original size:30 final size:30
Alignment explanation
Indices: 46331140--46331209 Score: 113
Period size: 30 Copynumber: 2.3 Consensus size: 30
46331130 AGGTACGACC
* * *
46331140 AAAATAAAAACTTATTAAAGTTAGGTGACT
1 AAAATGAAAACTTATTAAAGTTAAGTAACT
46331170 AAAATGAAAACTTATTAAAGTTAAGTAACT
1 AAAATGAAAACTTATTAAAGTTAAGTAACT
46331200 AAAATGAAAA
1 AAAATGAAAA
46331210 TTGTTGTTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.56, C:0.06, G:0.11, T:0.27
Consensus pattern (30 bp):
AAAATGAAAACTTATTAAAGTTAAGTAACT
Found at i:46332371 original size:39 final size:42
Alignment explanation
Indices: 46332283--46332380 Score: 103
Period size: 39 Copynumber: 2.4 Consensus size: 42
46332273 GTCACTTCGG
* * * * * *
46332283 TCACGGTTCCCTTGAGAGTTATCATCTTGAGTAACACTTTGG
1 TCACGGTTCCCTTGAGAGATATCATCTGGAGCAACACCTCGC
*
46332325 TCGCGGTTCCCTTGAGA-AT-TC-TCTGGAGCAACACCTCGC
1 TCACGGTTCCCTTGAGAGATATCATCTGGAGCAACACCTCGC
*
46332364 TCACGGTTCCCTCGAGA
1 TCACGGTTCCCTTGAGA
46332381 TTTTCGGAAA
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
39 28 0.60
40 2 0.04
41 1 0.02
42 16 0.34
ACGTcount: A:0.19, C:0.29, G:0.22, T:0.30
Consensus pattern (42 bp):
TCACGGTTCCCTTGAGAGATATCATCTGGAGCAACACCTCGC
Found at i:46332709 original size:22 final size:22
Alignment explanation
Indices: 46332681--46332727 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
46332671 ACACCATCAT
46332681 TCATAGGTAACTCATTCCAAAA
1 TCATAGGTAACTCATTCCAAAA
46332703 TCATAGGTAACTCATTCCAAAA
1 TCATAGGTAACTCATTCCAAAA
46332725 TCA
1 TCA
46332728 AATTCAGAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (22 bp):
TCATAGGTAACTCATTCCAAAA
Found at i:46334659 original size:36 final size:36
Alignment explanation
Indices: 46334508--46334670 Score: 118
Period size: 36 Copynumber: 4.6 Consensus size: 36
46334498 TGAACATTCG
* * * ** *
46334508 GGTGACTTTTGCTGGTCCCATGAATTATTAATTGTA
1 GGTGACTTTTGCTGATCCCAAGAACTATTTGTTGCA
* *
46334544 GGTGACTTTT-CTTGGTCCCAAGAACTA--T-TTGCT
1 GGTGACTTTTGC-TGATCCCAAGAACTATTTGTTGCA
* * * ** *
46334577 GGTGGCTTTTGTTGATCCCAAGAATTATTTGCCGTA
1 GGTGACTTTTGCTGATCCCAAGAACTATTTGTTGCA
* * *
46334613 GATGATTTTTGCCGATCCCAAGAACTATTTGTTGCA
1 GGTGACTTTTGCTGATCCCAAGAACTATTTGTTGCA
* *
46334649 GGTGACTTTTGTTGGTCCCAAG
1 GGTGACTTTTGCTGATCCCAAG
46334671 CATTATTCAT
Statistics
Matches: 95, Mismatches: 27, Indels: 10
0.72 0.20 0.08
Matches are distributed among these distances:
33 25 0.26
35 2 0.02
36 68 0.72
ACGTcount: A:0.20, C:0.18, G:0.23, T:0.39
Consensus pattern (36 bp):
GGTGACTTTTGCTGATCCCAAGAACTATTTGTTGCA
Found at i:46335557 original size:153 final size:153
Alignment explanation
Indices: 46335279--46335568 Score: 472
Period size: 153 Copynumber: 1.9 Consensus size: 153
46335269 TTTTGGAGAG
* * * *
46335279 ACATCTTGTGATTTAGATTTGCTCATCCCCCAATCAGACCACTCGCTTTGCTTCTTTGAACTGGA
1 ACATCTTGTGATTTAGATTTGCTCACCCCCCAATCAGAACACTCACTTTGCTTCTTCGAACTGGA
* * *
46335344 TGCAGCTGCTGCAAAATTGTCACCATCCTCTGCATTTTTATGCCATGCAGACAAGGCATCCCAAC
66 TGCAGCAGCTGCAAAATTGTCACCATCCTCTGCATTTTTATGCCATCCAGACAAAGCATCCCAAC
46335409 CAACATCCACTTTTGGAGAGACA
131 CAACATCCACTTTTGGAGAGACA
* * *
46335432 ACATCTTGTGATTTAGATTTGCTCGCCCCCCAATCAGAACACTCATTTTGCTTCTTCGAACTGGT
1 ACATCTTGTGATTTAGATTTGCTCACCCCCCAATCAGAACACTCACTTTGCTTCTTCGAACTGGA
* *
46335497 TGCAGCAGCTGCAAATTTGTCACCATCCTCTGCATTTTTATTCCATCCAGACAAAGCATCCCAAC
66 TGCAGCAGCTGCAAAATTGTCACCATCCTCTGCATTTTTATGCCATCCAGACAAAGCATCCCAAC
46335562 CAACATC
131 CAACATC
46335569 TTGTGAGTTA
Statistics
Matches: 125, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
153 125 1.00
ACGTcount: A:0.26, C:0.30, G:0.15, T:0.30
Consensus pattern (153 bp):
ACATCTTGTGATTTAGATTTGCTCACCCCCCAATCAGAACACTCACTTTGCTTCTTCGAACTGGA
TGCAGCAGCTGCAAAATTGTCACCATCCTCTGCATTTTTATGCCATCCAGACAAAGCATCCCAAC
CAACATCCACTTTTGGAGAGACA
Found at i:46335610 original size:132 final size:129
Alignment explanation
Indices: 46335430--46335698 Score: 412
Period size: 132 Copynumber: 2.1 Consensus size: 129
46335420 TTTGGAGAGA
* * * *
46335430 CAACATCTTGTGATTTAGATTTGCTCGCCCCCCAATCAGAACACTCATTTTGCTTCTTCGAACTG
1 CAACATCTTGTGAGTTAGATTTGCTCGCACCCCAACCAGAACACTCATTTTGCTTCTCCGAACTG
* * * *
46335495 GTTGCAGCAGCTGCAAATTTGTCACCATCCTCTGCATTTTTATTCCATCCAGACAAAGCATCCCA
66 GTCGCAGCAGCAGCAAATTTGTCAACATCCTCAGCATTTTTATTCCATCCAG---AAGCATCCCA
46335560 AC
128 AC
*
46335562 CAACATCTTGTGAGTTAGATTTGCTCGCACCCCAACCAGACCACTCATTTTGCTTCTCCGAACTG
1 CAACATCTTGTGAGTTAGATTTGCTCGCACCCCAACCAGAACACTCATTTTGCTTCTCCGAACTG
* *
46335627 GTCGCAGCTGCAGCAAATTTGTCAACATCCTCAGCATTTTTATTCCATCCAGATGCATCCCAAC
66 GTCGCAGCAGCAGCAAATTTGTCAACATCCTCAGCATTTTTATTCCATCCAGAAGCATCCCAAC
46335691 CAACATCT
1 CAACATCT
46335699 GACACCTTGT
Statistics
Matches: 126, Mismatches: 11, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
129 19 0.15
132 107 0.85
ACGTcount: A:0.25, C:0.31, G:0.14, T:0.30
Consensus pattern (129 bp):
CAACATCTTGTGAGTTAGATTTGCTCGCACCCCAACCAGAACACTCATTTTGCTTCTCCGAACTG
GTCGCAGCAGCAGCAAATTTGTCAACATCCTCAGCATTTTTATTCCATCCAGAAGCATCCCAAC
Found at i:46346235 original size:64 final size:64
Alignment explanation
Indices: 46346151--46346278 Score: 238
Period size: 64 Copynumber: 2.0 Consensus size: 64
46346141 GAGAAGTCTA
*
46346151 CAAGAGAAGAAGAAGGCGTAAGAAAATTCCAGCACACAGTACATATCACGAAAGGAAGTGGTTG
1 CAAGAGAAGAAGAAGACGTAAGAAAATTCCAGCACACAGTACATATCACGAAAGGAAGTGGTTG
*
46346215 CAAGAGAAGAAGAAGACGTAAGAAAATTCCAGCACACAGTATATATCACGAAAGGAAGTGGTTG
1 CAAGAGAAGAAGAAGACGTAAGAAAATTCCAGCACACAGTACATATCACGAAAGGAAGTGGTTG
46346279 TTCAATATAG
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 62 1.00
ACGTcount: A:0.45, C:0.15, G:0.26, T:0.15
Consensus pattern (64 bp):
CAAGAGAAGAAGAAGACGTAAGAAAATTCCAGCACACAGTACATATCACGAAAGGAAGTGGTTG
Found at i:46348329 original size:17 final size:18
Alignment explanation
Indices: 46348296--46348330 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
46348286 TATTTAATAA
46348296 TATTTTTATCTCAAAAAG
1 TATTTTTATCTCAAAAAG
46348314 TATTTTT-TCTTCAAAAA
1 TATTTTTATC-TCAAAAA
46348331 AATACTCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 2 0.12
18 14 0.88
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.49
Consensus pattern (18 bp):
TATTTTTATCTCAAAAAG
Found at i:46350312 original size:21 final size:21
Alignment explanation
Indices: 46350288--46350338 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
46350278 AAAAAAAAAG
* *
46350288 AAATAGCAAGAAAATAGTAAA
1 AAATAGCAAGAAAACAATAAA
*
46350309 AAATAGAAAGAAAACAATAAA
1 AAATAGCAAGAAAACAATAAA
46350330 AAAGTAGCA
1 AAA-TAGCA
46350339 TATTTTTTTG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.69, C:0.06, G:0.14, T:0.12
Consensus pattern (21 bp):
AAATAGCAAGAAAACAATAAA
Found at i:46356630 original size:265 final size:265
Alignment explanation
Indices: 46356157--46356686 Score: 1060
Period size: 265 Copynumber: 2.0 Consensus size: 265
46356147 TAGACTCATT
46356157 CAAGATTTTATACATATAAACTTAAGGCCCTAATCATTTTTCTCCAATTTTTTTATGATTTTCCA
1 CAAGATTTTATACATATAAACTTAAGGCCCTAATCATTTTTCTCCAATTTTTTTATGATTTTCCA
46356222 AAATCAGAACAGGGGAACCCGAAATCATTCTGACCTTATCTCACAAAATTTACTATAACTCATGA
66 AAATCAGAACAGGGGAACCCGAAATCATTCTGACCTTATCTCACAAAATTTACTATAACTCATGA
46356287 TTTATAATTCCATTGCTTACACCGTTTCTTCTATGAGAAACTAGACTCAATAAGATTTAATTCTA
131 TTTATAATTCCATTGCTTACACCGTTTCTTCTATGAGAAACTAGACTCAATAAGATTTAATTCTA
46356352 TATTTTTTTCATTCTCTAATTAAATTTCTACGATTTTTGGTAAATTTTCAAAGTCAGACTACTGC
196 TATTTTTTTCATTCTCTAATTAAATTTCTACGATTTTTGGTAAATTTTCAAAGTCAGACTACTGC
46356417 TGCTG
261 TGCTG
46356422 CAAGATTTTATACATATAAACTTAAGGCCCTAATCATTTTTCTCCAATTTTTTTATGATTTTCCA
1 CAAGATTTTATACATATAAACTTAAGGCCCTAATCATTTTTCTCCAATTTTTTTATGATTTTCCA
46356487 AAATCAGAACAGGGGAACCCGAAATCATTCTGACCTTATCTCACAAAATTTACTATAACTCATGA
66 AAATCAGAACAGGGGAACCCGAAATCATTCTGACCTTATCTCACAAAATTTACTATAACTCATGA
46356552 TTTATAATTCCATTGCTTACACCGTTTCTTCTATGAGAAACTAGACTCAATAAGATTTAATTCTA
131 TTTATAATTCCATTGCTTACACCGTTTCTTCTATGAGAAACTAGACTCAATAAGATTTAATTCTA
46356617 TATTTTTTTCATTCTCTAATTAAATTTCTACGATTTTTGGTAAATTTTCAAAGTCAGACTACTGC
196 TATTTTTTTCATTCTCTAATTAAATTTCTACGATTTTTGGTAAATTTTCAAAGTCAGACTACTGC
46356682 TGCTG
261 TGCTG
46356687 TCTCAAAACT
Statistics
Matches: 265, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
265 265 1.00
ACGTcount: A:0.32, C:0.19, G:0.10, T:0.39
Consensus pattern (265 bp):
CAAGATTTTATACATATAAACTTAAGGCCCTAATCATTTTTCTCCAATTTTTTTATGATTTTCCA
AAATCAGAACAGGGGAACCCGAAATCATTCTGACCTTATCTCACAAAATTTACTATAACTCATGA
TTTATAATTCCATTGCTTACACCGTTTCTTCTATGAGAAACTAGACTCAATAAGATTTAATTCTA
TATTTTTTTCATTCTCTAATTAAATTTCTACGATTTTTGGTAAATTTTCAAAGTCAGACTACTGC
TGCTG
Found at i:46366310 original size:15 final size:16
Alignment explanation
Indices: 46366290--46366319 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
46366280 AAATCATCCC
46366290 TTTGTTTTT-TTTTTT
1 TTTGTTTTTGTTTTTT
46366305 TTTGTTTTTGTTTTT
1 TTTGTTTTTGTTTTT
46366320 AGTAATGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (16 bp):
TTTGTTTTTGTTTTTT
Found at i:46369438 original size:20 final size:20
Alignment explanation
Indices: 46369415--46369452 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
46369405 TGTTTATATG
* *
46369415 TACATGTATATGTATATACA
1 TACATATATATATATATACA
46369435 TACATATATATATATATA
1 TACATATATATATATATA
46369453 TATAAGTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.08, G:0.05, T:0.42
Consensus pattern (20 bp):
TACATATATATATATATACA
Found at i:46373167 original size:23 final size:23
Alignment explanation
Indices: 46373141--46373188 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
46373131 GAAAAGTAAG
*
46373141 TATACAGGCAACAGATTCATACT
1 TATACAGGCAACAGACTCATACT
46373164 TATACAGGCAACAGACTCATACT
1 TATACAGGCAACAGACTCATACT
46373187 TA
1 TA
46373189 AATACAATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.23, G:0.12, T:0.25
Consensus pattern (23 bp):
TATACAGGCAACAGACTCATACT
Found at i:46378951 original size:17 final size:18
Alignment explanation
Indices: 46378919--46378952 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
46378909 GATTTTAATG
*
46378919 TATTTTCATGTTATGTTA
1 TATTTTCATATTATGTTA
46378937 TATTTT-ATATTATGTT
1 TATTTTCATATTATGTT
46378953 TTTTATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.24, C:0.03, G:0.09, T:0.65
Consensus pattern (18 bp):
TATTTTCATATTATGTTA
Found at i:46386094 original size:4 final size:4
Alignment explanation
Indices: 46386087--46386117 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
46386077 TCTATCTATA
46386087 TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TAT
46386118 TTATACCTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:46389211 original size:11 final size:11
Alignment explanation
Indices: 46389195--46389219 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
46389185 AATGAATTTA
46389195 ATTAAATGCTC
1 ATTAAATGCTC
46389206 ATTAAATGCTC
1 ATTAAATGCTC
46389217 ATT
1 ATT
46389220 TCCACTTGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.36, C:0.16, G:0.08, T:0.40
Consensus pattern (11 bp):
ATTAAATGCTC
Found at i:46397103 original size:22 final size:22
Alignment explanation
Indices: 46397078--46397130 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 22
46397068 TTTTTTTAAA
*
46397078 AATATTTATATTATATTATTTT
1 AATATTTATATTATAATATTTT
*
46397100 AATATTTAATATTTTAATATTTT
1 AATATTT-ATATTATAATATTTT
*
46397123 -TTATTTAT
1 AATATTTAT
46397131 CGAAAGTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 2 0.07
22 12 0.44
23 13 0.48
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
AATATTTATATTATAATATTTT
Found at i:46397105 original size:8 final size:8
Alignment explanation
Indices: 46397094--46397122 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
46397084 TATATTATAT
46397094 TATTTTAA
1 TATTTTAA
46397102 TA-TTTAA
1 TATTTTAA
46397109 TATTTTAA
1 TATTTTAA
46397117 TATTTT
1 TATTTT
46397123 TTATTTATCG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (8 bp):
TATTTTAA
Found at i:46397127 original size:15 final size:15
Alignment explanation
Indices: 46397085--46397128 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
46397075 AAAAATATTT
46397085 ATATTATATTATTTTA
1 ATATT-TATTATTTTA
*
46397101 ATATTTAATATTTTA
1 ATATTTATTATTTTA
*
46397116 ATATTTTTTATTT
1 ATATTTATTATTT
46397129 ATCGAAAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
15 20 0.80
16 5 0.20
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
ATATTTATTATTTTA
Found at i:46399985 original size:77 final size:75
Alignment explanation
Indices: 46399841--46399985 Score: 166
Period size: 77 Copynumber: 1.9 Consensus size: 75
46399831 AAATAATAGG
* * *
46399841 AAAAGACAAAAAATACCCTTGAGTTAATATTTATTATTTTGCAAAAGTAAGGGTATTTTAGTACT
1 AAAAGAAAAAAAATACCCTTGAGTTAATATTTATTACTTTGCAAAAGTAAGGGTATTTTAATACT
46399906 TTCTCATCTA
66 TTCTCATCTA
* * * * * *
46399916 AAAAGAAAAAAAGATACTCTTTATGTTAATATTTGTTACTTTGTAAAATTACA-TGTATTTTAAT
1 AAAAGAAAAAAA-ATACCCTTGA-GTTAATATTTATTACTTTGCAAAAGTA-AGGGTATTTTAAT
*
46399980 GCTTTC
63 ACTTTC
46399986 ATAACTGGAT
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
75 11 0.19
76 8 0.14
77 37 0.65
78 1 0.02
ACGTcount: A:0.39, C:0.10, G:0.11, T:0.40
Consensus pattern (75 bp):
AAAAGAAAAAAAATACCCTTGAGTTAATATTTATTACTTTGCAAAAGTAAGGGTATTTTAATACT
TTCTCATCTA
Found at i:46403716 original size:13 final size:13
Alignment explanation
Indices: 46403689--46403739 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 13
46403679 TTTGGCAATA
* *
46403689 CTTTTGAGAATTG
1 CTTTTGAAAAGTG
46403702 CTTTTGAAAAGTG
1 CTTTTGAAAAGTG
* *
46403715 CTATGGAAAAGTG
1 CTTTTGAAAAGTG
46403728 CTTTTGAAAAGT
1 CTTTTGAAAAGT
46403740 TTAGTTTAAA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 32 1.00
ACGTcount: A:0.31, C:0.08, G:0.24, T:0.37
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:46404826 original size:16 final size:17
Alignment explanation
Indices: 46404797--46404829 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
46404787 CTCAAAAAAA
46404797 TAACACTAAAATTTATT
1 TAACACTAAAATTTATT
*
46404814 TAAC-CTAAGATTTATT
1 TAACACTAAAATTTATT
46404830 CTTTGCTTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.42
Consensus pattern (17 bp):
TAACACTAAAATTTATT
Found at i:46405465 original size:2 final size:2
Alignment explanation
Indices: 46405458--46405484 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
46405448 GAAATATGGC
46405458 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
46405485 AACTAGTAGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:46406070 original size:15 final size:15
Alignment explanation
Indices: 46406027--46406073 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
46406017 AAGTTGTGGA
*
46406027 TTTAGTCTCTGTA-T
1 TTTAGTCTTTGTATT
*
46406041 TTTAAT-TTTGTTATT
1 TTTAGTCTTTG-TATT
46406056 TTTAGTCTTTGTATT
1 TTTAGTCTTTGTATT
46406071 TTT
1 TTT
46406074 TAAATTTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
13 3 0.11
14 7 0.26
15 13 0.48
16 4 0.15
ACGTcount: A:0.15, C:0.06, G:0.11, T:0.68
Consensus pattern (15 bp):
TTTAGTCTTTGTATT
Found at i:46409757 original size:17 final size:18
Alignment explanation
Indices: 46409727--46409764 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
46409717 TAAAAGGTTC
*
46409727 TAAAATAATATTAAA-AA
1 TAAAAAAATATTAAATAA
*
46409744 TAAAAAAATCTTAAATAA
1 TAAAAAAATATTAAATAA
46409762 TAA
1 TAA
46409765 TATAAAATTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (18 bp):
TAAAAAAATATTAAATAA
Found at i:46409941 original size:18 final size:17
Alignment explanation
Indices: 46409918--46409960 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
46409908 TTTTTTACAG
46409918 TATTTTTATA-AATTTATA
1 TATTTTTA-AGAATTT-TA
46409936 TATTTTTAAGAATTTTA
1 TATTTTTAAGAATTTTA
46409953 TAATTTTT
1 T-ATTTTT
46409961 TATTAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (17 bp):
TATTTTTAAGAATTTTA
Found at i:46409942 original size:19 final size:18
Alignment explanation
Indices: 46409920--46409963 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
46409910 TTTTACAGTA
46409920 TTTTTATAAATTTATATAT
1 TTTTTATAAATTTATA-AT
* * *
46409939 TTTTAAGAATTTTATAAT
1 TTTTTATAAATTTATAAT
46409957 TTTTTAT
1 TTTTTAT
46409964 TAATATTTGC
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTTTATAAATTTATAAT
Found at i:46411166 original size:108 final size:106
Alignment explanation
Indices: 46410979--46411183 Score: 322
Period size: 108 Copynumber: 1.9 Consensus size: 106
46410969 TGGATTAAGA
* * *
46410979 TTTAAGAGGATATTTGGCTATTTGGTCAGACGAGAAATCGAAACCCAGCACATTAGGGCACATTT
1 TTTAAAAGGATATTTGGCTATTTGATCAGACGAGAAATCAAAACCCAGCACATTAGGGCACATTT
*
46411044 TCTCGAATTTCCAAACACAAAACATTGCCTTACTTCGAAAT
66 TCTCGAATCTCCAAACACAAAACATTGCCTTACTTCGAAAT
*
46411085 TTTAAAAGGATATTTGGCTATTTGAT-AGAACGAGAAAAATCAAAACCCAGCACATTAGGGCACG
1 TTTAAAAGGATATTTGGCTATTTGATCAG-ACGAG--AAATCAAAACCCAGCACATTAGGGCACA
*
46411149 TTTTCTCGAATCTCCAAACGCAAAACATTGCCTTA
63 TTTTCTCGAATCTCCAAACACAAAACATTGCCTTA
46411184 AAAAAATATT
Statistics
Matches: 90, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
105 2 0.02
106 29 0.32
108 59 0.66
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (106 bp):
TTTAAAAGGATATTTGGCTATTTGATCAGACGAGAAATCAAAACCCAGCACATTAGGGCACATTT
TCTCGAATCTCCAAACACAAAACATTGCCTTACTTCGAAAT
Found at i:46413361 original size:40 final size:40
Alignment explanation
Indices: 46413313--46413551 Score: 266
Period size: 40 Copynumber: 5.8 Consensus size: 40
46413303 TTCTTTCGTT
46413313 TGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATC
1 TGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATC
* * *
46413353 TGCTCCACTACTGCTTAGGGAGATAAGATTTGGTTTCTTTCG-TC
1 TGCTCCACTACTGCTTAGGGAGATAAGACTT-G---ATGT-GATC
* **
46413397 TGCTCCACTACTGCTTAGGGAGATAATACTTGATGCAATC
1 TGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATC
* * * * *
46413437 TGCTCCACTATTGCTTAGGGGGATAAGATCTTGTTTCTTTCG-TT
1 TGCTCCACTACTGCTTAGGGAGATAAGA-CTTG---ATGT-GATC
*
46413481 TGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATC
1 TGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATC
46413521 TGCTCCACTACTGCTTAGGGAGATAAGACTT
1 TGCTCCACTACTGCTTAGGGAGATAAGACTT
46413552 TTATTTCGTC
Statistics
Matches: 164, Mismatches: 23, Indels: 24
0.78 0.11 0.11
Matches are distributed among these distances:
39 1 0.01
40 91 0.55
41 5 0.03
43 5 0.03
44 61 0.37
45 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (40 bp):
TGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTGATC
Found at i:46413391 original size:84 final size:84
Alignment explanation
Indices: 46413286--46413548 Score: 440
Period size: 84 Copynumber: 3.1 Consensus size: 84
46413276 CTGTGACTTC
* *
46413286 AGGGAGATAGGA-TTGGTTTCTTTCGTTTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGTG
1 AGGGAGATAAGATTTGGTTTCTTTCGTTTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCG
46413350 ATCTGCTCCACTACTGCTT
66 ATCTGCTCCACTACTGCTT
* * *
46413369 AGGGAGATAAGATTTGGTTTCTTTCGTCTGCTCCACTACTGCTTAGGGAGATAATACTTGATGCA
1 AGGGAGATAAGATTTGGTTTCTTTCGTTTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCG
*
46413434 ATCTGCTCCACTATTGCTT
66 ATCTGCTCCACTACTGCTT
*
46413453 AGGGGGATAAGATCTT-GTTTCTTTCGTTTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGC
1 AGGGAGATAAGAT-TTGGTTTCTTTCGTTTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGC
46413517 GATCTGCTCCACTACTGCTT
65 GATCTGCTCCACTACTGCTT
46413537 AGGGAGATAAGA
1 AGGGAGATAAGA
46413549 CTTTTATTTC
Statistics
Matches: 166, Mismatches: 12, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
83 11 0.07
84 153 0.92
85 2 0.01
ACGTcount: A:0.22, C:0.19, G:0.24, T:0.34
Consensus pattern (84 bp):
AGGGAGATAAGATTTGGTTTCTTTCGTTTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCG
ATCTGCTCCACTACTGCTT
Found at i:46413723 original size:87 final size:87
Alignment explanation
Indices: 46413581--46415111 Score: 2702
Period size: 87 Copynumber: 17.6 Consensus size: 87
46413571 CACTGTAGTT
* * * * * * *
46413581 GATGGAGGCAAGACTTTGTTTTTGATCAGCTTCGCTGTTAACGCAGGAAGGCAAGATTTGCTATC
1 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
* * *
46413646 TTCAACCAGCTCCACTACAATC
66 TTTAACCAGCTCCCCTACAAGC
* * ** * * *
46413668 GATGGAGGCAAGGATTTGTTTTCGATCTGCTTCGCTGTTAACACAGGGAGACAAGATCTGCTATC
1 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
* * *
46413733 TTTAACTAGCTCCACTACAACC
66 TTTAACCAGCTCCCCTACAAGC
* ** * * *
46413755 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACACAGGAAGACAAGATTTGCTATC
1 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
* * * * *
46413820 TTCAACCAACTCCACTGCAACC
66 TTTAACCAGCTCCCCTACAAGC
46413842 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
1 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
46413907 TTTAACCAGCTCCCCTACAAGC
66 TTTAACCAGCTCCCCTACAAGC
46413929 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
1 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
46413994 TTTAACCAGCTCCCCTACAAGC
66 TTTAACCAGCTCCCCTACAAGC
46414016 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
1 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
46414081 TTTAACCAGCTCCCCTACAAGC
66 TTTAACCAGCTCCCCTACAAGC
46414103 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
1 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
46414168 TTTAACCAGCTCCCCTACAAGC
66 TTTAACCAGCTCCCCTACAAGC
46414190 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
1 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
46414255 TTTAACCAGCTCCCCTACAAGC
66 TTTAACCAGCTCCCCTACAAGC
46414277 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
1 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
46414342 TTTAACCAGCTCCCCTACAAGC
66 TTTAACCAGCTCCCCTACAAGC
46414364 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
1 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
46414429 TTTAACCAGCTCCCCTACAAGC
66 TTTAACCAGCTCCCCTACAAGC
46414451 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
1 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
46414516 TTTAACCAGCTCCCCTACAAGC
66 TTTAACCAGCTCCCCTACAAGC
46414538 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
1 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
46414603 TTTAACCAGCTCCCCTACAAGC
66 TTTAACCAGCTCCCCTACAAGC
46414625 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
1 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
46414690 TTTAACCAGCTCCCCTACAAGC
66 TTTAACCAGCTCCCCTACAAGC
46414712 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
1 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
46414777 TTTAACCAGCTCCCCTACAAGC
66 TTTAACCAGCTCCCCTACAAGC
46414799 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
1 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
46414864 TTTAACCAGCTCCCCTACAAGC
66 TTTAACCAGCTCCCCTACAAGC
46414886 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
1 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
46414951 TTTAACCAGCTCCCCTACAAGC
66 TTTAACCAGCTCCCCTACAAGC
* * *
46414973 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATC
1 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
* * *
46415038 TTTAACCAGCTCCACTGCAACC
66 TTTAACCAGCTCCCCTACAAGC
* * *
46415060 GGTGGAGGCAAGGCTTTATTTTCGATCTGCTTCGCTGTTAACGTAGGAAGGC
1 GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGC
46415112 GCCGTTTCAT
Statistics
Matches: 1406, Mismatches: 38, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
87 1406 1.00
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.29
Consensus pattern (87 bp):
GATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTCAACGTAGGAAGGCAAGATCTGTTATC
TTTAACCAGCTCCCCTACAAGC
Found at i:46423052 original size:10 final size:10
Alignment explanation
Indices: 46423039--46423082 Score: 52
Period size: 10 Copynumber: 4.2 Consensus size: 10
46423029 TTTATAGATA
46423039 TTATTTTAAT
1 TTATTTTAAT
46423049 TTATTTTAAT
1 TTATTTTAAT
*
46423059 ATAGATTTTAAT
1 -T-TATTTTAAT
*
46423071 ATATTTTAAT
1 TTATTTTAAT
46423081 TT
1 TT
46423083 TAAGCTTCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
10 19 0.68
11 1 0.04
12 8 0.29
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (10 bp):
TTATTTTAAT
Found at i:46434343 original size:366 final size:366
Alignment explanation
Indices: 46433608--46435077 Score: 2288
Period size: 366 Copynumber: 4.0 Consensus size: 366
46433598 AGCTCTAACA
* * * *
46433608 GTTGCAATTTCATGTTCAACTCGAGGAACTCCCTTTTG-TCCCATAACTGCCTCTGAAAGCACAT
1 GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTCGCT-CCATAACTGCCTCTGAAAGCGCAT
**** *
46433672 CAGAACTAACAACAGAAAGACAATCTGTGCTTCTCTTTGAATTAACCGGCTCCTGTGCACAAAAG
65 CAGAACTAACAACAGAAAGACAATCCACACTTCTCTTTGAATTAACCAGCTCCTGTGCACAAAAG
* *
46433737 TTGGCAACAACAGCGCTAGCAATGCTGCTGCTGCCCCACCGTTTTTTCCTCCTACTGTAAACTAA
130 TTGGCAACAACAGCGCTAGCACTGCTGCTGCTGCCCCACCGTTTCTTCCT-C--CTGTAAACTAA
* * *** *
46433802 AATCGGCATAGGACTTTCAAACATCACACTCGCAGATAACCAATGAGAACCAGTTTCGGGTAAGG
192 AATCGGCATAGGACTTTCAAACATCACACTCACAGATGACTGCTGAGAACCAGTTTTGGGTAAGG
**
46433867 GAAGGCATGAATCCTCAGCCTCTTTACATCCAGGTTGTGAAGTACCATCACATTTAGGAGTCATC
257 GAAGGCATGAATCCTCAGCCTCTTTACATCCACTTTGTGAAGTACCATCACATTTAGGAGTCATC
* ** *
46433932 CGGAAAGTTTCATTATCAGACATCCAATCACATAAAGAAATCTTT
322 TGCCAAGTTTCATTACCAGACATCCAATCACATAAAGAAATCTTT
*
46433977 GTTGCAGTTTCATGTTCAACTTGAGAAACTCCCTTTCGCTCCATAACTGCCTCTGAAAGCGCATC
1 GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTCGCTCCATAACTGCCTCTGAAAGCGCATC
46434042 AGAACTAACAACAGAAAGACAATCCACACTTCTCTTTGAATTAACCAGCTCCTGTGCACAAAAGT
66 AGAACTAACAACAGAAAGACAATCCACACTTCTCTTTGAATTAACCAGCTCCTGTGCACAAAAGT
* * * *
46434107 TGGCAACAACAGCGTTAGCACTGCTGCTTCTGCCCCACCGTTTCTTCCTCCTGTAAATTAAATTC
131 TGGCAACAACAGCGCTAGCACTGCTGCTGCTGCCCCACCGTTTCTTCCTCCTGTAAACTAAAATC
* * * * *
46434172 GGAATAGGACTTTCAAACCTCATACTTACAGATGACTGCTGAGAACCAATTTTGGGTAAGGGAAG
196 GGCATAGGACTTTCAAACATCACACTCACAGATGACTGCTGAGAACCAGTTTTGGGTAAGGGAAG
46434237 GCATGAATCCTCAGCCTCTTTACATCCACTTTGTGAAGTACCATCACATTTAGGAGTCATCTTG-
261 GCATGAATCCTCAGCCTCTTTACATCCACTTTGTGAAGTACCATCACATTTAGGAGTCATC-TGC
46434301 CAAGTTTCATTACCAGACATCCAATCACATAAAGAAATCTTT
325 CAAGTTTCATTACCAGACATCCAATCACATAAAGAAATCTTT
*
46434343 GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTCGCT---TAACTGCCTCTGAAAGTGCATC
1 GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTCGCTCCATAACTGCCTCTGAAAGCGCATC
* *
46434405 AGAACTAACAACAGAAAGACAATCCGCACTTCTCTTTGAATTAA-CATGCTCCTGTGCATAAAAG
66 AGAACTAACAACAGAAAGACAATCCACACTTCTCTTTGAATTAACCA-GCTCCTGTGCACAAAAG
* * * *
46434469 TTGGCAACAACAGAGCTAGCGCTGCTGCTGCTGCCCCACCGTTTCTTCCCCCTACTGTAAACTGA
130 TTGGCAACAACAGCGCTAGCACTGCTGCTGCTGCCCCACCGTTTCTT---CCTCCTGTAAACTAA
* * *
46434534 AATCGGCATAGGACTTTCAAACATCACATTCACAGATGGCTGCTGAGAACCAGTTCTGGGTAAGG
192 AATCGGCATAGGACTTTCAAACATCACACTCACAGATGACTGCTGAGAACCAGTTTTGGGTAAGG
46434599 GAAGGCATGAATCCTCAGCCTCTTTACATCCAGC-TTGTGAAGTACCATCACATTTAGGAGTCAT
257 GAAGGCATGAATCCTCAGCCTCTTTACATCCA-CTTTGTGAAGTACCATCACATTTAGGAGTCAT
*
46434663 CTGCCAAGTTTCATTACCAGACATCCAATCACATAAAGAAGTCTTT
321 CTGCCAAGTTTCATTACCAGACATCCAATCACATAAAGAAATCTTT
* * * *
46434709 GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTTGCTCCATAACTGCTTCTGAAAGTGCATT
1 GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTCGCTCCATAACTGCCTCTGAAAGCGCATC
*
46434774 AGAACTAACAACAGAAAAACAATCCACACTTCTCTTTGAATTAACCAGCTCCTGTGCACAAAAGT
66 AGAACTAACAACAGAAAGACAATCCACACTTCTCTTTGAATTAACCAGCTCCTGTGCACAAAAGT
* *
46434839 TGGCAACAACAGCACTAGCACTGCTGCTGCAGCCCCACCGTTTCTTCCTCCTGTAAACTAAAATC
131 TGGCAACAACAGCGCTAGCACTGCTGCTGCTGCCCCACCGTTTCTTCCTCCTGTAAACTAAAATC
* * *
46434904 GGCATAGGACTTTCAAACATCATACTCACAGATGACTGTTGAGAACCAGTTTTGGGAAAGGGAAG
196 GGCATAGGACTTTCAAACATCACACTCACAGATGACTGCTGAGAACCAGTTTTGGGTAAGGGAAG
* * *
46434969 GCATGAATCCTCAGCCTCTTTACAACCACTTTGTGAAGTACCATCGCATTTAGGAGTCATCAGCC
261 GCATGAATCCTCAGCCTCTTTACATCCACTTTGTGAAGTACCATCACATTTAGGAGTCATCTGCC
46435034 AAGTTTCATTACCAGACATCCAATCACATAAAGAAATCTTT
326 AAGTTTCATTACCAGACATCCAATCACATAAAGAAATCTTT
46435075 GTT
1 GTT
46435078 TCCTGCATTC
Statistics
Matches: 1013, Mismatches: 75, Indels: 29
0.91 0.07 0.03
Matches are distributed among these distances:
362 2 0.00
363 123 0.12
365 3 0.00
366 595 0.59
367 2 0.00
368 1 0.00
369 284 0.28
370 3 0.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (366 bp):
GTTGCAGTTTCATGTTCAACTCGAGAAACTCCCTTTCGCTCCATAACTGCCTCTGAAAGCGCATC
AGAACTAACAACAGAAAGACAATCCACACTTCTCTTTGAATTAACCAGCTCCTGTGCACAAAAGT
TGGCAACAACAGCGCTAGCACTGCTGCTGCTGCCCCACCGTTTCTTCCTCCTGTAAACTAAAATC
GGCATAGGACTTTCAAACATCACACTCACAGATGACTGCTGAGAACCAGTTTTGGGTAAGGGAAG
GCATGAATCCTCAGCCTCTTTACATCCACTTTGTGAAGTACCATCACATTTAGGAGTCATCTGCC
AAGTTTCATTACCAGACATCCAATCACATAAAGAAATCTTT
Found at i:46435291 original size:127 final size:127
Alignment explanation
Indices: 46435065--46435454 Score: 739
Period size: 127 Copynumber: 3.1 Consensus size: 127
46435055 AATCACATAA
46435065 AGAAATCTTTGTTTCCTGCATTCAAACACATAAAATAAGACTGTTTCAATTGAACTAGAAATTTG
1 AGAAATCTTTGTTTCCTGCATTCAAACACATAAAATAAGACTGTTTCAATTGAACTAGAAATTTG
46435130 AAGTCCCAATCTAAATCTCACCAAAAATAATTCAACAAACACAAAATCAGGGTTTCTCTCTT
66 AAGTCCCAATCTAAATCTCACCAAAAATAATTCAACAAACACAAAATCAGGGTTTCTCTCTT
46435192 AGAAATCTTTGTTTCCTGCATTCAAACACATAAAATAAGACTGTTTCAATTGAACTAGAAATTTG
1 AGAAATCTTTGTTTCCTGCATTCAAACACATAAAATAAGACTGTTTCAATTGAACTAGAAATTTG
46435257 AAGTCCCAATCTAAATCTCACCAAAAATAATTCAACAAACACAAAATCAGGGTTTCTCTCTT
66 AAGTCCCAATCTAAATCTCACCAAAAATAATTCAACAAACACAAAATCAGGGTTTCTCTCTT
*
46435319 AGAAATCTTTGTTTCCTGCATTCAAACACAT--AATAGGACTGTTTCAATTGAACTAGAAATTTG
1 AGAAATCTTTGTTTCCTGCATTCAAACACATAAAATAAGACTGTTTCAATTGAACTAGAAATTTG
* *
46435382 AAGTCCCAATCTAAATCTCACCTAATATAATTCAACAAACACAAAATCAGGGTTTCTCTCTT
66 AAGTCCCAATCTAAATCTCACCAAAAATAATTCAACAAACACAAAATCAGGGTTTCTCTCTT
46435444 AGAAATCTTTG
1 AGAAATCTTTG
46435455 GTAAACTAAA
Statistics
Matches: 260, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
125 102 0.39
127 158 0.61
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (127 bp):
AGAAATCTTTGTTTCCTGCATTCAAACACATAAAATAAGACTGTTTCAATTGAACTAGAAATTTG
AAGTCCCAATCTAAATCTCACCAAAAATAATTCAACAAACACAAAATCAGGGTTTCTCTCTT
Found at i:46435853 original size:127 final size:127
Alignment explanation
Indices: 46435629--46436005 Score: 688
Period size: 127 Copynumber: 3.0 Consensus size: 127
46435619 AATCACATAA
46435629 AGAAATCTTTGTTTCCTGCATTCAAACACAT--AATAGGACTGTTTCAATTGAACTAGAAATTTG
1 AGAAATCTTTGTTTCCTGCATTCAAACACATAAAATAGGACTGTTTCAATTGAACTAGAAATTTG
46435692 AAGTCCCAATCTAAATCTCACCTAATATAATTCAACAAACACAAAATCAGGGTTTCTCTCTT
66 AAGTCCCAATCTAAATCTCACCTAATATAATTCAACAAACACAAAATCAGGGTTTCTCTCTT
*
46435754 AGAAATCTTTGTTTCCTGCATTCAAACACATAAAATAAGACTGTTTCAATTGAACTAGAAATTTG
1 AGAAATCTTTGTTTCCTGCATTCAAACACATAAAATAGGACTGTTTCAATTGAACTAGAAATTTG
* *
46435819 AAGTCCCAATCTAAATCTCACCAAAAATAATTCAACAAACACAAAATCAGGGTTTCTCTCTT
66 AAGTCCCAATCTAAATCTCACCTAATATAATTCAACAAACACAAAATCAGGGTTTCTCTCTT
**
46435881 AGAAATCTTTGTTTCCTGCGGTCAAACACATAAAATAGGACTGTTTCAATTGAACTA-AAATTTG
1 AGAAATCTTTGTTTCCTGCATTCAAACACATAAAATAGGACTGTTTCAATTGAACTAGAAATTTG
46435945 AAGTCCCAATCTAAATCTCACCTAATATAATTCAACAAACACAAAATCAGGGTTTCTCTCT
66 AAGTCCCAATCTAAATCTCACCTAATATAATTCAACAAACACAAAATCAGGGTTTCTCTCT
46436006 AACTTCCACC
Statistics
Matches: 242, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
125 31 0.13
126 66 0.27
127 145 0.60
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (127 bp):
AGAAATCTTTGTTTCCTGCATTCAAACACATAAAATAGGACTGTTTCAATTGAACTAGAAATTTG
AAGTCCCAATCTAAATCTCACCTAATATAATTCAACAAACACAAAATCAGGGTTTCTCTCTT
Found at i:46437230 original size:13 final size:15
Alignment explanation
Indices: 46437212--46437248 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
46437202 AACTCGAGCA
46437212 TTAATTATTTAA-T-
1 TTAATTATTTAATTG
*
46437225 TTAATTAGTTAATTG
1 TTAATTATTTAATTG
46437240 TTAATTATT
1 TTAATTATT
46437249 ATTTGACTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
13 11 0.55
14 1 0.05
15 8 0.40
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (15 bp):
TTAATTATTTAATTG
Found at i:46437424 original size:22 final size:20
Alignment explanation
Indices: 46437377--46437426 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
46437367 TGAAGTGAAG
**
46437377 GTGATATTGAATTATGAAAT
1 GTGATATTGAATTAAAAAAT
*
46437397 GCGATATTGAATTTAAAAAAAT
1 GTGATATTGAA-TT-AAAAAAT
46437419 GTGATATT
1 GTGATATT
46437427 ATGGACTTGC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
20 10 0.42
21 2 0.08
22 12 0.50
ACGTcount: A:0.42, C:0.02, G:0.18, T:0.38
Consensus pattern (20 bp):
GTGATATTGAATTAAAAAAT
Found at i:46447299 original size:13 final size:13
Alignment explanation
Indices: 46447279--46447317 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
46447269 AACGAAACAT
46447279 AGAAAGAAAGAAA
1 AGAAAGAAAGAAA
46447292 TA-AAAGAAAGAAA
1 -AGAAAGAAAGAAA
*
46447305 AGAAGGAAAGAAA
1 AGAAAGAAAGAAA
46447318 GGGAAAATTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 1 0.04
13 21 0.91
14 1 0.04
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (13 bp):
AGAAAGAAAGAAA
Found at i:46448043 original size:14 final size:15
Alignment explanation
Indices: 46448005--46448045 Score: 50
Period size: 14 Copynumber: 2.7 Consensus size: 15
46447995 TTTGTGATTG
46448005 ATATGAATTTGATTGAA
1 ATATGAA-TTGA-TGAA
46448022 AT-TGAATTGA-GAA
1 ATATGAATTGATGAA
46448035 ATATGAATTGA
1 ATATGAATTGA
46448046 ATACCCTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 5 0.22
14 8 0.35
15 4 0.17
16 4 0.17
17 2 0.09
ACGTcount: A:0.44, C:0.00, G:0.20, T:0.37
Consensus pattern (15 bp):
ATATGAATTGATGAA
Found at i:46448335 original size:15 final size:16
Alignment explanation
Indices: 46448315--46448348 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
46448305 ATTGGCATTA
46448315 GAATTGAT-ATTGAAT
1 GAATTGATAATTGAAT
46448330 GAATTGATAAATTGAAT
1 GAATTGAT-AATTGAAT
46448347 GA
1 GA
46448349 TTTTATTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
17 9 0.53
ACGTcount: A:0.44, C:0.00, G:0.21, T:0.35
Consensus pattern (16 bp):
GAATTGATAATTGAAT
Found at i:46451786 original size:42 final size:42
Alignment explanation
Indices: 46451687--46451844 Score: 178
Period size: 43 Copynumber: 3.7 Consensus size: 42
46451677 AGCTCGTACA
* * *
46451687 ATGCCAACGTCCCAGACGTAGTCTTACATGTAATCAAATAACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCATAT-ACG
46451730 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGTAATCATATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCATATACG
* * *
46451772 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATC-TCAAATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGT-AATCAT-ATA-CG
*
46451816 ATGCCAACATCCCAGACGTGGTCTTACAC
1 ATGCCAACGTCCCAGACGTGGTCTTACAC
46451845 AAAATCACAT
Statistics
Matches: 99, Mismatches: 9, Indels: 13
0.82 0.07 0.11
Matches are distributed among these distances:
42 32 0.32
43 38 0.38
44 29 0.29
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCATATACG
Found at i:46451842 original size:86 final size:84
Alignment explanation
Indices: 46451687--46451844 Score: 196
Period size: 85 Copynumber: 1.8 Consensus size: 84
46451677 AGCTCGTACA
* * *
46451687 ATGCCAACGTCCCAGACGTAGTCTTACATGTAATCAAATAACGATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACATAGTCTTACACGTAATCAAAT-ACGATGCCACTATCCCAGACAGGGT
46451752 CTTACACGTAATCATATACG
65 CTTACACGTAATCATATACG
* *
46451772 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATCTCAAAT-CGATGCCAAC-ATCCCAGAC-G
1 ATGCCAACGTCCCAGACATAGTCTTACACGT-AA--TCAAATACGATGCC-ACTATCCCAGACAG
46451834 TGGTCTTACAC
62 -GGTCTTACAC
46451845 AAAATCACAT
Statistics
Matches: 63, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
85 28 0.44
86 27 0.43
87 2 0.03
88 6 0.10
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (84 bp):
ATGCCAACGTCCCAGACATAGTCTTACACGTAATCAAATACGATGCCACTATCCCAGACAGGGTC
TTACACGTAATCATATACG
Done.