Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 143 of 145
Found at i:47599833 original size:2 final size:2
Alignment explanation
Indices: 47599828--47599853 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
47599818 CTTAGGGACC
47599828 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
47599854 CTAAGTCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:47601756 original size:48 final size:49
Alignment explanation
Indices: 47601684--47601785 Score: 161
Period size: 48 Copynumber: 2.1 Consensus size: 49
47601674 GTCTTTGAAC
47601684 TTTCACAAAAAAAAAAATTAAATACCCATTCACTTTAATTCTACTCGTT
1 TTTCACAAAAAAAAAAATTAAATACCCATTCACTTTAATTCTACTCGTT
** * *
47601733 TTTCAC-AAAAAAATTATTAAATACTCATTCACTTTAATTCTACTTGTT
1 TTTCACAAAAAAAAAAATTAAATACCCATTCACTTTAATTCTACTCGTT
47601781 TTTCA
1 TTTCA
47601786 TTTGCTTTAT
Statistics
Matches: 49, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
48 43 0.88
49 6 0.12
ACGTcount: A:0.39, C:0.19, G:0.02, T:0.40
Consensus pattern (49 bp):
TTTCACAAAAAAAAAAATTAAATACCCATTCACTTTAATTCTACTCGTT
Found at i:47604381 original size:16 final size:17
Alignment explanation
Indices: 47604353--47604386 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
47604343 AAATTATATA
47604353 TATATATAAAATAGTAT
1 TATATATAAAATAGTAT
*
47604370 TATATA-AAAATATTAT
1 TATATATAAAATAGTAT
47604386 T
1 T
47604387 GATTTTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 10 0.62
17 6 0.38
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
TATATATAAAATAGTAT
Found at i:47604383 original size:13 final size:14
Alignment explanation
Indices: 47604348--47604385 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
47604338 AATACAAATT
47604348 ATATATATATATAAA
1 ATATAT-TATATAAA
47604363 ATAGTATTATATAAA
1 ATA-TATTATATAAA
47604378 A-ATATTAT
1 ATATATTAT
47604386 TGATTTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 6 0.27
14 1 0.05
15 12 0.55
16 3 0.14
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (14 bp):
ATATATTATATAAA
Found at i:47606369 original size:77 final size:77
Alignment explanation
Indices: 47606237--47606392 Score: 276
Period size: 77 Copynumber: 2.0 Consensus size: 77
47606227 CTTTTAATAA
* * * *
47606237 AAACGCCCAACAAATGCGAGTATGATCATCAATAAATGTGACAAACCAACGTTTTCTTGAAAAAG
1 AAACACCCAACAAATGCGAGTATGATCATCAATAAATGTGACAAACCAACGTTTTCCTAAAAAAA
47606302 TTGAGACTCTTG
66 TTGAGACTCTTG
47606314 AAACACCCAACAAATGCGAGTATGATCATCAATAAATGTGACAAACCAACGTTTTCCTAAAAAAA
1 AAACACCCAACAAATGCGAGTATGATCATCAATAAATGTGACAAACCAACGTTTTCCTAAAAAAA
47606379 TTGAGACTCTTG
66 TTGAGACTCTTG
47606391 AA
1 AA
47606393 GGTCCGTAAA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
77 75 1.00
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.24
Consensus pattern (77 bp):
AAACACCCAACAAATGCGAGTATGATCATCAATAAATGTGACAAACCAACGTTTTCCTAAAAAAA
TTGAGACTCTTG
Found at i:47623214 original size:73 final size:74
Alignment explanation
Indices: 47623112--47623259 Score: 289
Period size: 73 Copynumber: 2.0 Consensus size: 74
47623102 AGAGAAATAT
47623112 ATATATATATATATATAAAAGTAAACACGTCAACAAATAATGAGGTTTTCGATTTTAATTTTTTA
1 ATATATATATATATATAAAAGTAAACACGTCAACAAATAATGAGGTTTTCGATTTTAATTTTTTA
47623177 CTTGATTAA
66 CTTGATTAA
47623186 ATATATATAT-TATATAAAAGTAAACACGTCAACAAATAATGAGGTTTTCGATTTTAATTTTTTA
1 ATATATATATATATATAAAAGTAAACACGTCAACAAATAATGAGGTTTTCGATTTTAATTTTTTA
47623250 CTTGATTAA
66 CTTGATTAA
47623259 A
1 A
47623260 AAATAACTAG
Statistics
Matches: 74, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
73 64 0.86
74 10 0.14
ACGTcount: A:0.42, C:0.08, G:0.09, T:0.41
Consensus pattern (74 bp):
ATATATATATATATATAAAAGTAAACACGTCAACAAATAATGAGGTTTTCGATTTTAATTTTTTA
CTTGATTAA
Found at i:47624892 original size:72 final size:72
Alignment explanation
Indices: 47624811--47625172 Score: 609
Period size: 72 Copynumber: 5.0 Consensus size: 72
47624801 TTAGGGCCGG
* * *
47624811 TTCCAAGATCACTGGGAAACCTCTTGCAACTCACTCATTTAGACTTGTCACAGAACCAATTGAGT
1 TTCCAAGATCATTGGGGAACCTCTTGCAACTCACTCATTTAGACTTGTCGCAGAACCAATTGAGT
*
47624876 GAACAAA
66 GGACAAA
* *
47624883 TTCCAAGATCATTGGGGAACCTTTTGCAACTCACTCATTTGGACTTGTCGCAGAACCAATTGAGT
1 TTCCAAGATCATTGGGGAACCTCTTGCAACTCACTCATTTAGACTTGTCGCAGAACCAATTGAGT
47624948 GGACAAA
66 GGACAAA
*
47624955 TTCCAAGATCATTGGGGAA-CTCCTTGCAACTCACTCATTTAGACTTGTCACAGAACCAATTGAG
1 TTCCAAGATCATTGGGGAACCT-CTTGCAACTCACTCATTTAGACTTGTCGCAGAACCAATTGAG
47625019 TGGACAAA
65 TGGACAAA
* * *
47625027 TTCCAAGATCATTGGGGAAACTCTCGCAACTCACTAATTTAGACTTGTCGCAGAACCAATTGAGT
1 TTCCAAGATCATTGGGGAACCTCTTGCAACTCACTCATTTAGACTTGTCGCAGAACCAATTGAGT
*
47625092 GGACCAA
66 GGACAAA
47625099 TTCCAAGATCATTGGGGAACCTCTTGCAACTCACTCATTTAGACTTGTCGCAGAACCAATTGAGT
1 TTCCAAGATCATTGGGGAACCTCTTGCAACTCACTCATTTAGACTTGTCGCAGAACCAATTGAGT
47625164 GGACAAA
66 GGACAAA
47625171 TT
1 TT
47625173 TCATTGTCAA
Statistics
Matches: 271, Mismatches: 17, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
71 2 0.01
72 267 0.99
73 2 0.01
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (72 bp):
TTCCAAGATCATTGGGGAACCTCTTGCAACTCACTCATTTAGACTTGTCGCAGAACCAATTGAGT
GGACAAA
Found at i:47633388 original size:23 final size:22
Alignment explanation
Indices: 47633346--47633388 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
47633336 TTTGCATTAG
*
47633346 TTTAAAATTTTTTAGTTTTAAT
1 TTTAAAATTTTTTAGATTTAAT
*
47633368 TTTAAGATATTTTTAGATTTA
1 TTTAAAAT-TTTTTAGATTTA
47633389 TACATATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (22 bp):
TTTAAAATTTTTTAGATTTAAT
Found at i:47633795 original size:15 final size:17
Alignment explanation
Indices: 47633765--47633815 Score: 72
Period size: 15 Copynumber: 3.2 Consensus size: 17
47633755 AACTTAATAC
47633765 AAATTA-TATATATATA
1 AAATTAGTATATATATA
47633781 AAA-TAGTAT-TATATA
1 AAATTAGTATATATATA
*
47633796 AAATTATTATATATATA
1 AAATTAGTATATATATA
47633813 AAA
1 AAA
47633816 GGAAAGGACC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
15 11 0.35
16 11 0.35
17 9 0.29
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (17 bp):
AAATTAGTATATATATA
Found at i:47635291 original size:148 final size:149
Alignment explanation
Indices: 47635103--47635400 Score: 589
Period size: 148 Copynumber: 2.0 Consensus size: 149
47635093 AAAATTTTTA
47635103 AAATTTAAAAATCAATTAATTGTTTATATGATATCGATATGTATGTTCCGTCAATAAAGTTAACA
1 AAATTTAAAAATCAATTAATTGTTTATATGATATCGATATGTATGTTCCGTCAATAAAGTTAACA
47635168 AATGTTAACTTTTTCATACATTCTGGGATGATTTGATAAATAACACAAATTTAAAAACTCAAAGA
66 AATGTTAACTTTTTCATACATTCTGGGATGATTTGATAAATAACACAAATTTAAAAACTCAAAGA
47635233 GGTGAAATATTAAATGGAG
131 GGTGAAATATTAAATGGAG
47635252 AAATTT-AAAATCAATTAATTGTTTATATGATATCGATATGTATGTTCCGTCAATAAAGTTAACA
1 AAATTTAAAAATCAATTAATTGTTTATATGATATCGATATGTATGTTCCGTCAATAAAGTTAACA
47635316 AATGTTAACTTTTTCATACATTCTGGGATGATTTGATAAATAACACAAATTTAAAAACTCAAAGA
66 AATGTTAACTTTTTCATACATTCTGGGATGATTTGATAAATAACACAAATTTAAAAACTCAAAGA
47635381 GGTGAAATATTAAATGGAG
131 GGTGAAATATTAAATGGAG
47635400 A
1 A
47635401 GTTAAAATTA
Statistics
Matches: 149, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
148 143 0.96
149 6 0.04
ACGTcount: A:0.42, C:0.09, G:0.13, T:0.35
Consensus pattern (149 bp):
AAATTTAAAAATCAATTAATTGTTTATATGATATCGATATGTATGTTCCGTCAATAAAGTTAACA
AATGTTAACTTTTTCATACATTCTGGGATGATTTGATAAATAACACAAATTTAAAAACTCAAAGA
GGTGAAATATTAAATGGAG
Found at i:47635477 original size:148 final size:146
Alignment explanation
Indices: 47635155--47635447 Score: 394
Period size: 148 Copynumber: 2.0 Consensus size: 146
47635145 ATGTTCCGTC
47635155 AATAAAGTTAACAAATGTTAACTTTTTCATACATTCTGGGATGATTTGATAAATAACACAAATTT
1 AATAAAGTTAACAAATGTTAACTTTTTCATACATTCTGGGATGATTTGATAAATAACACAAATTT
* * ** *
47635220 AAAAACTCAAAGAGGTGAAATATTAAATGGAGAAATTTAAAATCAATTAATTGTTTATATGATAT
66 AAAAACTCAAAGAGGTGAAATATTAAATGGAG-AAGTTAAAATCAATTAATTGTTTAAAAAAAAT
** * ** *
47635285 CGATATGTATGTTCCGT
130 AAATATGTAAGGACCAT
47635302 CAATAAAGTTAACAAATGTTAACTTTTTCATACATTCTGGGATGATTTGATAAATAACACAAATT
1 -AATAAAGTTAACAAATGTTAACTTTTTCATACATTCTGGGATGATTTGATAAATAACACAAATT
* * ** *
47635367 TAAAAACTCAAAGAGGTGAAATATTAAATGGAG-AGTTAAAATTACTTTTTTTTTTAAAAAAAAT
65 TAAAAACTCAAAGAGGTGAAATATTAAATGGAGAAGTTAAAATCAATTAATTGTTTAAAAAAAAT
47635431 AAA-AT-TGAAGGACCAT
130 AAATATGT-AAGGACCAT
47635447 A
1 A
47635448 TAACTATATA
Statistics
Matches: 128, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
144 2 0.02
145 7 0.05
146 22 0.17
148 97 0.76
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.34
Consensus pattern (146 bp):
AATAAAGTTAACAAATGTTAACTTTTTCATACATTCTGGGATGATTTGATAAATAACACAAATTT
AAAAACTCAAAGAGGTGAAATATTAAATGGAGAAGTTAAAATCAATTAATTGTTTAAAAAAAATA
AATATGTAAGGACCAT
Found at i:47638374 original size:72 final size:72
Alignment explanation
Indices: 47638298--47638440 Score: 234
Period size: 72 Copynumber: 2.0 Consensus size: 72
47638288 AAACGGTTCC
*
47638298 AAGATCATTGGGAAACCTCTTGCAACTCACTCATTTAGACTTGT-CGTGGAACCAACTGAGTGGA
1 AAGATCATTGGGAAACCTCTTGCAACTCACTCATTTAGACTTGTCCG-GGAACAAACTGAGTGGA
47638362 CAAATTCT
65 CAAATTCT
* * *
47638370 AAGATCATTGGGGAACCTCTTGCAACTCACTTATTTAGACTTGTCCGGGAACAAATTGAGTGGAC
1 AAGATCATTGGGAAACCTCTTGCAACTCACTCATTTAGACTTGTCCGGGAACAAACTGAGTGGAC
47638435 AAATTC
66 AAATTC
47638441 CATTCTCAAT
Statistics
Matches: 66, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
72 64 0.97
73 2 0.03
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.28
Consensus pattern (72 bp):
AAGATCATTGGGAAACCTCTTGCAACTCACTCATTTAGACTTGTCCGGGAACAAACTGAGTGGAC
AAATTCT
Found at i:47644265 original size:36 final size:36
Alignment explanation
Indices: 47644225--47644294 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
47644215 ATGATGACTG
* * *
47644225 ATGTGAAAGTGAATATGAGGGTGTGTTTTTCATGCC
1 ATGTGAAAGTAAATATGAGGGTATGTTATTCATGCC
* *
47644261 ATGTGACAGTAAATATGTGGGTATGTTATTCATG
1 ATGTGAAAGTAAATATGAGGGTATGTTATTCATG
47644295 TCATATGACA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (36 bp):
ATGTGAAAGTAAATATGAGGGTATGTTATTCATGCC
Found at i:47644304 original size:36 final size:36
Alignment explanation
Indices: 47644236--47644306 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 36
47644226 TGTGAAAGTG
* * *
47644236 AATATGAGGGTGTGTTTTTCATGCCATGTGACAGTA
1 AATATGAGGGTATGTTATTCATGCCATATGACAGTA
* *
47644272 AATATGTGGGTATGTTATTCATGTCATATGACAGT
1 AATATGAGGGTATGTTATTCATGCCATATGACAGT
47644307 GTTTATAATT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.27, C:0.10, G:0.25, T:0.38
Consensus pattern (36 bp):
AATATGAGGGTATGTTATTCATGCCATATGACAGTA
Found at i:47645246 original size:21 final size:21
Alignment explanation
Indices: 47645222--47645261 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
47645212 GTAAATTAAA
47645222 ATTAATTAAAACTA-AAATATG
1 ATTAATTAAAA-TATAAATATG
47645243 ATTAATTAAAATATAAATA
1 ATTAATTAAAATATAAATA
47645262 GGCTTTATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.60, C:0.03, G:0.03, T:0.35
Consensus pattern (21 bp):
ATTAATTAAAATATAAATATG
Found at i:47645498 original size:14 final size:14
Alignment explanation
Indices: 47645452--47645499 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
47645442 TCTTTTAACC
*
47645452 ATTTTTCAAAAATT
1 ATTTTTTAAAAATT
* * *
47645466 ACTTTCTAAAAATC
1 ATTTTTTAAAAATT
*
47645480 GTTTTTTAAAAATT
1 ATTTTTTAAAAATT
47645494 ATTTTT
1 ATTTTT
47645500 AGTGAAACAA
Statistics
Matches: 25, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.38, C:0.08, G:0.02, T:0.52
Consensus pattern (14 bp):
ATTTTTTAAAAATT
Found at i:47647553 original size:72 final size:72
Alignment explanation
Indices: 47647472--47647620 Score: 201
Period size: 72 Copynumber: 2.1 Consensus size: 72
47647462 TCAGGACCGC
* * *
47647472 TTCCAAGATCACTGGGAAACCTCTTGCAACTTAGTCATTTAGACTTGACGGC-GAACCATTTGAG
1 TTCCAAGATCACTGGGAAACCTCTTGCAACTCACTCATTTAGACTTG-CGGCAGAACCAATTGAG
47647536 TGGACAAA
65 TGGACAAA
* * * * * *
47647544 TTCCAAGATCATTGGGTAACCTCTTGCAACTCACTGATTTATACTTGTGGCATAACCAATTGAGT
1 TTCCAAGATCACTGGGAAACCTCTTGCAACTCACTCATTTAGACTTGCGGCAGAACCAATTGAGT
47647609 GGACAAA
66 GGACAAA
47647616 TTCCA
1 TTCCA
47647621 TTGTCAATTC
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
71 3 0.04
72 64 0.96
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (72 bp):
TTCCAAGATCACTGGGAAACCTCTTGCAACTCACTCATTTAGACTTGCGGCAGAACCAATTGAGT
GGACAAA
Found at i:47653912 original size:14 final size:14
Alignment explanation
Indices: 47653867--47653914 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
47653857 TCTTCTAACC
*
47653867 ATTTTTCAAAAATT
1 ATTTTTTAAAAATT
* * *
47653881 ACTTTCTAAAAATC
1 ATTTTTTAAAAATT
47653895 ATTTTTTAAAAATT
1 ATTTTTTAAAAATT
47653909 ATTTTT
1 ATTTTT
47653915 AGTGAAACAA
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (14 bp):
ATTTTTTAAAAATT
Found at i:47662712 original size:72 final size:72
Alignment explanation
Indices: 47662618--47662804 Score: 302
Period size: 72 Copynumber: 2.6 Consensus size: 72
47662608 TCAGGACCGG
* *
47662618 TTCCAAGATCATTGAGGAACCTCTTGCAACTCACTCATTTAGACTTATCGCAGAACCAATTGAGT
1 TTCCAAGATCATTGGGGAACCTCTTGCAACTCACTCATTTAGACTTATCGCAGAACCAATTGAGG
*
47662683 GGAGAAA
66 GGACAAA
* * * * *
47662690 TTCCAAGTTCGTTGGGGAACCTCTTGCAACTCACTTATTTAGACTTGTGGCAGAACCAATTGAGG
1 TTCCAAGATCATTGGGGAACCTCTTGCAACTCACTCATTTAGACTTATCGCAGAACCAATTGAGG
47662755 GGACAAA
66 GGACAAA
47662762 TTCCAAGATCATTGGGGAACCTCTTGCAACTCACTCATTTAGA
1 TTCCAAGATCATTGGGGAACCTCTTGCAACTCACTCATTTAGA
47662805 ATTGGGATGG
Statistics
Matches: 104, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
72 104 1.00
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.28
Consensus pattern (72 bp):
TTCCAAGATCATTGGGGAACCTCTTGCAACTCACTCATTTAGACTTATCGCAGAACCAATTGAGG
GGACAAA
Found at i:47662823 original size:72 final size:72
Alignment explanation
Indices: 47662618--47662838 Score: 290
Period size: 72 Copynumber: 3.1 Consensus size: 72
47662608 TCAGGACCGG
*
47662618 TTCCAAGATCATTGAGGAACCTCTTGCAACTCACTCATTTAGACTT---ATCGCAGAACCAATTG
1 TTCCAAGATCATTGGGGAACCTCTTGCAACTCACTCATTTAGACTTGGGAT-G--GAACCAATTG
*
47662680 AGTGGAGAAA
63 AGTGGACAAA
* * *
47662690 TTCCAAGTTCGTTGGGGAACCTCTTGCAACTCACTTATTTAGACTTGTGGCA--GAACCAATTGA
1 TTCCAAGATCATTGGGGAACCTCTTGCAACTCACTCATTTAGACTTG-GG-ATGGAACCAATTGA
*
47662753 GGGGACAAA
64 GTGGACAAA
* *
47662762 TTCCAAGATCATTGGGGAACCTCTTGCAACTCACTCATTTAGAATTGGGATGGAACAAATTGAGT
1 TTCCAAGATCATTGGGGAACCTCTTGCAACTCACTCATTTAGACTTGGGATGGAACCAATTGAGT
47662827 GGACAAA
66 GGACAAA
47662834 TTCCA
1 TTCCA
47662839 TTGTCAATTC
Statistics
Matches: 130, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
70 1 0.01
71 2 0.02
72 126 0.97
77 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (72 bp):
TTCCAAGATCATTGGGGAACCTCTTGCAACTCACTCATTTAGACTTGGGATGGAACCAATTGAGT
GGACAAA
Found at i:47665681 original size:42 final size:43
Alignment explanation
Indices: 47665590--47665681 Score: 141
Period size: 46 Copynumber: 2.1 Consensus size: 43
47665580 GATTAATTAA
*
47665590 TTAATCCATGTGTATGTTTTATTTATTCAAATGATTAATAGCTAAT
1 TTAATCCATGTGTATGTTTTATTTATTCAAACGATTAATAG---AT
47665636 TTAATCCATGTGTATGTTTTATTTATTCAAACGATTAATAG-T
1 TTAATCCATGTGTATGTTTTATTTATTCAAACGATTAATAGAT
47665678 TTAA
1 TTAA
47665682 AAAATTTTAG
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
42 5 0.11
46 40 0.89
ACGTcount: A:0.33, C:0.09, G:0.11, T:0.48
Consensus pattern (43 bp):
TTAATCCATGTGTATGTTTTATTTATTCAAACGATTAATAGAT
Found at i:47666991 original size:9 final size:9
Alignment explanation
Indices: 47666977--47667007 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
47666967 GTTAAACGAA
47666977 TCGAGTTAT
1 TCGAGTTAT
*
47666986 TCGAGTTAA
1 TCGAGTTAT
47666995 TCGAGTTAT
1 TCGAGTTAT
47667004 TCGA
1 TCGA
47667008 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:47668385 original size:5 final size:5
Alignment explanation
Indices: 47668375--47668404 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
47668365 CTCGAAAATT
47668375 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA
1 TTCGA TTCGA TTCGA TTCGA TTCGA TTCGA
47668405 CCGAATGCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (5 bp):
TTCGA
Found at i:47669053 original size:29 final size:30
Alignment explanation
Indices: 47668978--47669055 Score: 97
Period size: 30 Copynumber: 2.6 Consensus size: 30
47668968 TTCAAAGGTG
*
47668978 GCAACACAGCAGCAA-CATGCAAGAAACCAT
1 GCAACACAGCTG-AAGCATGCAAGAAACCAT
* *
47669008 GCAACACAGCTGCAGCATGCAAGTAACCA-
1 GCAACACAGCTGAAGCATGCAAGAAACCAT
*
47669037 GGAACACAGCTGAAGCATG
1 GCAACACAGCTGAAGCATG
47669056 GTAATGTCCA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
29 18 0.43
30 24 0.57
ACGTcount: A:0.41, C:0.28, G:0.22, T:0.09
Consensus pattern (30 bp):
GCAACACAGCTGAAGCATGCAAGAAACCAT
Found at i:47672074 original size:16 final size:16
Alignment explanation
Indices: 47672053--47672084 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
47672043 AAAATATTTT
47672053 TAAAAAGTATAAATTA
1 TAAAAAGTATAAATTA
47672069 TAAAAAGTATAAATTA
1 TAAAAAGTATAAATTA
47672085 AATTTAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (16 bp):
TAAAAAGTATAAATTA
Found at i:47674845 original size:21 final size:22
Alignment explanation
Indices: 47674812--47674854 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
47674802 TTTTTTGAGT
47674812 TTTTATGAATATT-TTTATAAA
1 TTTTATGAATATTGTTTATAAA
* * *
47674833 TTTTATTATTATTGTTTTTAAA
1 TTTTATGAATATTGTTTATAAA
47674855 AAAATAAAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.63
Consensus pattern (22 bp):
TTTTATGAATATTGTTTATAAA
Found at i:47677485 original size:6 final size:6
Alignment explanation
Indices: 47677461--47677499 Score: 53
Period size: 6 Copynumber: 6.7 Consensus size: 6
47677451 TTACTCTTCG
* *
47677461 TTTTAT TTTT-G TTTCAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
47677500 TTTCTGAAGT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 3 0.11
6 25 0.89
ACGTcount: A:0.13, C:0.03, G:0.03, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:47677498 original size:17 final size:18
Alignment explanation
Indices: 47677461--47677499 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
47677451 TTACTCTTCG
*
47677461 TTTTATTTTT-GTTTCAT
1 TTTTATTTTTATTTTCAT
*
47677478 TTTTATTTTTATTTTTAT
1 TTTTATTTTTATTTTCAT
47677496 TTTT
1 TTTT
47677500 TTTCTGAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.13, C:0.03, G:0.03, T:0.82
Consensus pattern (18 bp):
TTTTATTTTTATTTTCAT
Found at i:47678377 original size:17 final size:18
Alignment explanation
Indices: 47678348--47678384 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
47678338 TTTTTTTATT
47678348 TTATATAGATATAAATAC
1 TTATATAGATATAAATAC
*
47678366 TTATAT-GATATATATAC
1 TTATATAGATATAAATAC
47678383 TT
1 TT
47678385 TACACTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 12 0.67
18 6 0.33
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.46
Consensus pattern (18 bp):
TTATATAGATATAAATAC
Found at i:47679115 original size:106 final size:104
Alignment explanation
Indices: 47678932--47679142 Score: 316
Period size: 106 Copynumber: 2.0 Consensus size: 104
47678922 AAAAATAATA
* * *
47678932 AAGGCAATATTTTGCATTTGGAAATTTGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCGT
1 AAGGCAATATTTTACATTTGGAAATTTGAAAACGTGCCCTAATGAGCTGGGTTTCGATTTCTCGT
* *
47678997 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGT
66 TAGACCAAATAGCCAAATACCCTTTTAAAATTTCAAAGT
*
47679036 AAGGCAATATTTTACGTTTGGAAATTTGAGAAAACGTGCCCTAATGAGCTGGGTTTCGATTTCTC
1 AAGGCAATATTTTACATTTGGAAATTT--GAAAACGTGCCCTAATGAGCTGGGTTTCGATTTCTC
* *
47679101 TTTTAG-CCAAATAGCCAAATACCCTTTTAAAGTTTCAAAGT
64 -GTTAGACCAAATAGCCAAATACCCTTTTAAAATTTCAAAGT
47679142 A
1 A
47679143 TAGGTTTTGG
Statistics
Matches: 96, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
104 25 0.26
106 68 0.71
107 3 0.03
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.35
Consensus pattern (104 bp):
AAGGCAATATTTTACATTTGGAAATTTGAAAACGTGCCCTAATGAGCTGGGTTTCGATTTCTCGT
TAGACCAAATAGCCAAATACCCTTTTAAAATTTCAAAGT
Found at i:47679733 original size:19 final size:19
Alignment explanation
Indices: 47679709--47679748 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
47679699 TTGTTTTGAG
47679709 TTATAGTTTTCATCATGTT
1 TTATAGTTTTCATCATGTT
47679728 TTATAGTTTTCATCATGTT
1 TTATAGTTTTCATCATGTT
47679747 TT
1 TT
47679749 GTATTTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.20, C:0.10, G:0.10, T:0.60
Consensus pattern (19 bp):
TTATAGTTTTCATCATGTT
Found at i:47683543 original size:89 final size:89
Alignment explanation
Indices: 47683392--47684536 Score: 1574
Period size: 89 Copynumber: 12.9 Consensus size: 89
47683382 CACAGATCAA
* * *
47683392 TGAAGATTGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACTAGTCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGCCTTGCCT
47683457 TCCTGTACTGACAGCGGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * *
47683481 TGAAGATAGCAGATCATGCCTTCCTGTACTGATGGCGAAGCAGATCAAAGAAACCAGTCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGCCTTGCCT
* * *
47683546 TCCTATATTGACAGCGAAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * * * * *
47683570 TAAAGATAGTAGATCATGCCTTCCTGTACTGACAGTGAAGCAGATCGAAGAAGCCAGTCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGCCTTGCCT
* * *
47683635 TCTTATACTGACAGCGAAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * *
47683659 T-AAGGATAGCAGATCATGCCTCCCTGTACTAACGGCGAAGCAGATCGAAGAAACCAGTCTTGCC
1 TGAA-GATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGCCTTGCC
* *
47683723 TTCCTGTACTGACAGCGAAGTAGAC
65 TTCCTGTACTGACAGCGGAGCAGAC
* * * * * * * * *
47683748 TAAAGATAGCAAATCATGCCTTCCTATACTGGCAGCGAAGCAGATCGGAGACACCAACCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGCCTTGCCT
47683813 TCCTGTACTGACAGCGGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * *
47683837 TAAATATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGAAACCCGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGCCTTGCCT
*
47683902 TCCTGTACTGACAGCGGAACAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * *
47683926 TGAAGATAGCAGATCTTGCTTTCCTGTACTAACGGTGAAGCAGATCGAAGAAACCAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGCCTTGCCT
47683991 TCCTGTACTGACAGCGGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* *
47684015 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGTGAAGCAGATCGAAGAAACCAACCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGCCTTGCCT
* *
47684080 TCCTGTACTGACAGCGGAGCAAAT
66 TCCTGTACTGACAGCGGAGCAGAC
* * * * * * * *
47684104 TTAAAATAGCAGATTTTACCTTCCTATATTGACAGCGAAGCATG-TCGAAGACACCAGCCTTGCC
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCA-GATCGAAGAAACCAGCCTTGCC
*
47684168 TTCCTGTACTGACAACGGAGCAGAC
65 TTCCTGTACTGACAGCGGAGCAGAC
* * *
47684193 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACTGCGAAGTAGATCGAAGACACCAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGCCTTGCCT
47684258 TCCTGTACTGACAGCGGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * * * * *
47684282 TGAAAATAGCAGATTTTTCCTTCCTATACTGACAGCGAAGCATATCGAAGACACCAGCCTTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGCCTTGCCT
* *
47684347 TCCCGTACTGACAGCGGAGCAAAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * *
47684371 TGAAGATAGCAGATCTTGCCTTCCTGTATTGACGGCGAAGCAGATCGAAGACACCAGCCTTACCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGCCTTGCCT
*
47684436 TCCTGTACTGACAGCAGAGCAGAC
66 TCCTGTACTGACAGCGGAGCAGAC
* * * *
47684460 TAAAGATAGCAGATATTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGACACCAGCCCTGCCT
1 TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGCCTTGCCT
47684525 TCCTGTACTGAC
66 TCCTGTACTGAC
47684537 GACGAAGTAG
Statistics
Matches: 944, Mismatches: 108, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
88 3 0.00
89 938 0.99
90 3 0.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (89 bp):
TGAAGATAGCAGATCTTGCCTTCCTGTACTGACGGCGAAGCAGATCGAAGAAACCAGCCTTGCCT
TCCTGTACTGACAGCGGAGCAGAC
Found at i:47684810 original size:132 final size:132
Alignment explanation
Indices: 47684655--47685225 Score: 862
Period size: 132 Copynumber: 4.4 Consensus size: 132
47684645 AGATTACAGA
* * *
47684655 TCCTATCTCCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTATCCCCCTAAGCAGTAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAG
*
47684720 TGAAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATT
66 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATT
47684785 AG
131 AG
* * *
47684787 TCTTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAAATTGAAGATTCTGTCTCCCTAAGCAGTAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAG
*
47684852 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGTCATT
66 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATT
*
47684917 TG
131 AG
* * *
47684919 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATTTTGTCTCCCTAAGTAGTAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAG
* * *
47684984 TGGAGCAGATCGAAGATCGTGAATCTTCTCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATC
66 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATT
47685049 AG
131 AG
*
47685051 TCCTATCTCCCTAAGCAGTAGT-G-G-A-G-T----A--G--GATTCTGTCTCCCTAAGTAGTAG
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAG
* * * *
47685103 TGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCGAGATAGTGGTGAAGTAGATTTAAGCCATT
66 TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATT
47685168 AG
131 AG
*
47685170 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCTCCCT
1 TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCTCCCT
47685226 TGCAGATTCT
Statistics
Matches: 399, Mismatches: 27, Indels: 26
0.88 0.06 0.06
Matches are distributed among these distances:
119 104 0.26
120 1 0.00
121 2 0.01
122 1 0.00
123 2 0.01
124 1 0.00
127 1 0.00
128 2 0.01
129 1 0.00
130 2 0.01
131 1 0.00
132 281 0.70
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (132 bp):
TCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCTCCCTAAGCAGTAG
TGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGATAGTGGAGAAGCAGATTTAAGCCATT
AG
Found at i:47684999 original size:44 final size:44
Alignment explanation
Indices: 47684635--47685000 Score: 224
Period size: 44 Copynumber: 8.3 Consensus size: 44
47684625 TTTGCAGCAA
* ** * *
47684635 AGCAGATTAAAGATTACAGATCCTATCTCCCTAAGTAGTAGTGG
1 AGCAGATTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGG
* * * * *
47684679 AGTAGGTTGAAGATTGCAGAT-TCTATCCCCCTAAGCAGTAGTGA
1 AGCAGATTGAAGATTGTAGATCT-TATCTCCCTAAGCAGTAGTGG
* *
47684723 AGCAGATCGAAGATGGT-GAATCTTATCTTCCC-AAG-A-TAGTGGAG
1 AGCAGATTGAAGATTGTAG-ATCTTATC-TCCCTAAGCAGTAGT-G-G
*
47684767 AAGCAGATTTAAGCCA-T-TAG-TCTTATCTCCCTAAGCAGTAGTGG
1 -AGCAGATTGAAG--ATTGTAGATCTTATCTCCCTAAGCAGTAGTGG
* * * * *
47684811 AGTAGGTTGAAAATTGAAGAT-TCTGTCTCCCTAAGCAGTAGTGG
1 AGCAGATTGAAGATTGTAGATCT-TATCTCCCTAAGCAGTAGTGG
* *
47684855 AGCAGATCGAAGATGGT-GAATCTTATCTTCCC-AAG-A-TAGTGGAG
1 AGCAGATTGAAGATTGTAG-ATCTTATC-TCCCTAAGCAGTAGT-G-G
* *
47684899 AAGCAGATTTAAGTCATT-T-G-TCCTATCTCCCTAAGCAGTAGTGG
1 -AGCAGATTGAAG--ATTGTAGATCTTATCTCCCTAAGCAGTAGTGG
* * * * *
47684943 AGTAGGTTGAAGATTGTAGATTTTGTCTCCCTAAGTAGTAGTGG
1 AGCAGATTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGG
*
47684987 AGCAGATCGAAGAT
1 AGCAGATTGAAGAT
47685001 CGTGAATCTT
Statistics
Matches: 246, Mismatches: 45, Indels: 62
0.70 0.13 0.18
Matches are distributed among these distances:
41 4 0.02
42 10 0.04
43 35 0.14
44 149 0.61
45 34 0.14
46 11 0.04
47 3 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (44 bp):
AGCAGATTGAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGG
Found at i:47685177 original size:119 final size:119
Alignment explanation
Indices: 47684961--47685199 Score: 406
Period size: 119 Copynumber: 2.0 Consensus size: 119
47684951 GAAGATTGTA
* * *
47684961 GATTTTGTCTCCCTAAGTAGTAGTGGAGCAGATCGAAGATCGTGAATCTTCTCTTCCCAAGATAG
1 GATTCTGTCTCCCTAAGTAGTAGTGGAGCAGATCAAAGATCGTGAATCTTATCTTCCCAAGATAG
47685026 TGGAGAAGCAGATTTAAGCCATCAGTCCTATCTCCCTAAGCAGTAGTGGAGTAG
66 TGGAGAAGCAGATTTAAGCCATCAGTCCTATCTCCCTAAGCAGTAGTGGAGTAG
* *
47685080 GATTCTGTCTCCCTAAGTAGTAGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCGAGATAG
1 GATTCTGTCTCCCTAAGTAGTAGTGGAGCAGATCAAAGATCGTGAATCTTATCTTCCCAAGATAG
* * *
47685145 TGGTGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGCAGTAGTGGAGTAG
66 TGGAGAAGCAGATTTAAGCCATCAGTCCTATCTCCCTAAGCAGTAGTGGAGTAG
47685199 G
1 G
47685200 TTAAAGATTG
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
119 112 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (119 bp):
GATTCTGTCTCCCTAAGTAGTAGTGGAGCAGATCAAAGATCGTGAATCTTATCTTCCCAAGATAG
TGGAGAAGCAGATTTAAGCCATCAGTCCTATCTCCCTAAGCAGTAGTGGAGTAG
Found at i:47685230 original size:18 final size:18
Alignment explanation
Indices: 47685207--47685243 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
47685197 AGGTTAAAGA
47685207 TTGCAGATTCTGTCTCCC
1 TTGCAGATTCTGTCTCCC
47685225 TTGCAGATTCTGTCTCCC
1 TTGCAGATTCTGTCTCCC
47685243 T
1 T
47685244 AAGCAGTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.11, C:0.32, G:0.16, T:0.41
Consensus pattern (18 bp):
TTGCAGATTCTGTCTCCC
Found at i:47685964 original size:17 final size:17
Alignment explanation
Indices: 47685942--47685974 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
47685932 GTTACTCTTC
*
47685942 TTTTTATTTTTGTTTTG
1 TTTTTATTTTTATTTTG
47685959 TTTTTATTTTTATTTT
1 TTTTTATTTTTATTTT
47685975 TATTCGAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.00, G:0.06, T:0.85
Consensus pattern (17 bp):
TTTTTATTTTTATTTTG
Found at i:47686322 original size:5 final size:5
Alignment explanation
Indices: 47686312--47686336 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
47686302 ATCCGCGCGT
47686312 CGACC CGACC CGACC CGACC CGACC
1 CGACC CGACC CGACC CGACC CGACC
47686337 TGGAGGATCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.60, G:0.20, T:0.00
Consensus pattern (5 bp):
CGACC
Found at i:47687280 original size:23 final size:23
Alignment explanation
Indices: 47687254--47687304 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
47687244 TATTTTCATA
47687254 ATTTTATATCTACATACATATAT
1 ATTTTATATCTACATACATATAT
** * **
47687277 ATTTCCTTTCTATGTACATATAT
1 ATTTTATATCTACATACATATAT
47687300 ATTTT
1 ATTTT
47687305 TTTACATTTT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.31, C:0.14, G:0.02, T:0.53
Consensus pattern (23 bp):
ATTTTATATCTACATACATATAT
Found at i:47689315 original size:24 final size:24
Alignment explanation
Indices: 47689270--47689315 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
47689260 AACATGCTAA
* *
47689270 AAAATCATACTTCTATTTATCATC
1 AAAATCAAACTTCAATTTATCATC
47689294 AAAATCAAAC-TCAATTTCATCA
1 AAAATCAAACTTCAATTT-ATCA
47689316 AATACCCATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.43, C:0.22, G:0.00, T:0.35
Consensus pattern (24 bp):
AAAATCAAACTTCAATTTATCATC
Found at i:47691393 original size:18 final size:17
Alignment explanation
Indices: 47691372--47691409 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
47691362 TTATTCTTTA
*
47691372 TATATATATTTTTCGTTT
1 TATATATATATTT-GTTT
47691390 TATATATATATTTGTTT
1 TATATATATATTTGTTT
47691407 TAT
1 TAT
47691410 TTATTATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (17 bp):
TATATATATATTTGTTT
Found at i:47693218 original size:8 final size:8
Alignment explanation
Indices: 47693169--47693199 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
47693159 TTCAATTGAG
47693169 AAAATAAA
1 AAAATAAA
*
47693177 TAAATAAA
1 AAAATAAA
47693185 AAAATAAA
1 AAAATAAA
47693193 AAAATAA
1 AAAATAA
47693200 TATTTTGAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (8 bp):
AAAATAAA
Found at i:47695622 original size:109 final size:110
Alignment explanation
Indices: 47695466--47695675 Score: 287
Period size: 109 Copynumber: 1.9 Consensus size: 110
47695456 TAGGCACATC
* * * *
47695466 GATGACTTGAATCTAGGCTATTTTTATAGAAAATAAACACTCGATCAATGGATCAC-AACTTGCG
1 GATGACTCGAATCTAGGCTATTTTTATAGAAAATAAACACTCAATCAATAGACCACAAACTTGCG
* * *
47695530 GTTTGGTTCATTATTTAGATTTTAATCATTTGTTATAGGTGCATA
66 GTTTGATTCATTATTTAGATTTTAACCACTTGTTATAGGTGCATA
* ** * * *
47695575 GATGACTCGAATTTAGGCTATTTTTATAGAAAATAGGCAGTCAATCAATAGACCACAAATTTGGG
1 GATGACTCGAATCTAGGCTATTTTTATAGAAAATAAACACTCAATCAATAGACCACAAACTTGCG
*
47695640 GTTTGATTCATTGTTTAGATTTTAACCACTTGTTAT
66 GTTTGATTCATTATTTAGATTTTAACCACTTGTTAT
47695676 GCAACTTTAA
Statistics
Matches: 86, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
109 48 0.56
110 38 0.44
ACGTcount: A:0.31, C:0.13, G:0.18, T:0.38
Consensus pattern (110 bp):
GATGACTCGAATCTAGGCTATTTTTATAGAAAATAAACACTCAATCAATAGACCACAAACTTGCG
GTTTGATTCATTATTTAGATTTTAACCACTTGTTATAGGTGCATA
Found at i:47699613 original size:17 final size:18
Alignment explanation
Indices: 47699593--47699627 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
47699583 AATATATAAA
47699593 TTAATTAAATTAT-TTTC
1 TTAATTAAATTATATTTC
47699610 TTAATTAAATTATATTTC
1 TTAATTAAATTATATTTC
47699628 AACCCAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.37, C:0.06, G:0.00, T:0.57
Consensus pattern (18 bp):
TTAATTAAATTATATTTC
Found at i:47699758 original size:19 final size:18
Alignment explanation
Indices: 47699734--47699772 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
47699724 TATTTCTCGC
* *
47699734 ATTATACTTAAGTTAATTA
1 ATTATAATTAA-TTAAATA
47699753 ATTATAATTAATTAAATA
1 ATTATAATTAATTAAATA
47699771 AT
1 AT
47699773 AATTTAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (18 bp):
ATTATAATTAATTAAATA
Found at i:47715674 original size:33 final size:29
Alignment explanation
Indices: 47715605--47715679 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 29
47715595 CTTAAAAATA
*
47715605 TATATATATACCTATATATAAAAAAAATGC
1 TATATATATA-TTATATATAAAAAAAATGC
47715635 TCATATATATATTATATATAAAAAAAACTATGC
1 T-ATATATATATTATATAT-AAAAAAA--ATGC
47715668 GTATATATATAT
1 -TATATATATAT
47715680 ATGTATAGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
30 8 0.21
31 16 0.41
33 14 0.36
34 1 0.03
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.37
Consensus pattern (29 bp):
TATATATATATTATATATAAAAAAAATGC
Found at i:47717380 original size:89 final size:89
Alignment explanation
Indices: 47717050--47717981 Score: 1183
Period size: 89 Copynumber: 10.4 Consensus size: 89
47717040 AAATCCGCCA
* * *
47717050 TCTTCGATCTGCTTCGTCACCAGTATGGGAAGACAAGATCCGCTT-TCT-TCGATCTACTTCGCC
1 TCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTG-TTATCTCT-GATCTACTTC-AC
* *** * * *
47717113 ACCAGTATGGGAAGACAAGATCGGGTA
63 GCCAGTACATGAAGACAAGATCTGCTT
* * * * * *** *
47717140 TCTTTGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGTTTTCT-TCGATCTACTTCACGC
1 TCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTCT-GATCTACTTCACGC
* *
47717203 CAATACATGAAGACAAGATCTGTTT
65 CAGTACATGAAGACAAGATCTGCTT
* * * * *** * *
47717228 TCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCC
1 TCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTCTGATCTACTTCACGCC
* *
47717292 AGTACACGAAGACAATATCTGCTT
66 AGTACATGAAGACAAGATCTGCTT
* * *
47717316 TCTTCGATCTGTTTCACCACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCC
1 TCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTCTGATCTACTTCACGCC
*
47717381 AGTATATGAAGACAAGATCTGCTT
66 AGTACATGAAGACAAGATCTGCTT
* *
47717405 TCTTTGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCTCTGATCTACTTCACGCC
1 TCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTCTGATCTACTTCACGCC
47717470 AGTACATGAAGACAAGATCTGCTTTT
66 AGTACATGAAGACAAGATCTGC--TT
* * *
47717496 TCCTTCGATCTGCTTCGCAACCAGTATGGGAAGGCAAGATTTGTTATCTCTGATCTACTTCACGC
1 T-CTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTCTGATCTACTTCACGC
*
47717561 TAGTACATGAAGACAAGATCTGCTT
65 CAGTACATGAAGACAAGATCTGCTT
* * *
47717586 TCTTTGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCC
1 TCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTCTGATCTACTTCACGCC
47717651 AGTACATGAAGACAAGATCTGCTTTT
66 AGTACATGAAGACAAGATCTGC--TT
* *
47717677 TCCTTCGATCTGCTTCGCCACCAGTATAGGAAGGCAAGATCTGTTATCTCTGATCTACTTCACGC
1 T-CTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTCTGATCTACTTCACGC
47717742 CAGTACATGAAGACAAGATCTGCTT
65 CAGTACATGAAGACAAGATCTGCTT
* ** * *
47717767 TCTTTGATCTGCTTCGCCACCAGTATGGGAAGGTAAGATCTGGTATCTCTGATCTACTTCACTCC
1 TCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTCTGATCTACTTCACGCC
*
47717832 AGTACATGAAGACAAGATCTACTT
66 AGTACATGAAGACAAGATCTGCTT
* * *
47717856 TCTTTGATCTGCTTTGCCACCAGTATGGGAAGGCAAGATCTAG-TATCTCTGATCTACTTCACGC
1 TCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCT-GTTATCTCTGATCTACTTCACGC
*
47717920 TAGTACATGAAGACAAGATCTGCTT
65 CAGTACATGAAGACAAGATCTGCTT
* * *
47717945 TCTTCGATCTACTTCACCATCAGTATGGGAAGACAAG
1 TCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAG
47717982 TATGGGAAGA
Statistics
Matches: 758, Mismatches: 74, Indels: 21
0.89 0.09 0.02
Matches are distributed among these distances:
88 114 0.15
89 455 0.60
90 20 0.03
91 6 0.01
92 163 0.22
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30
Consensus pattern (89 bp):
TCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTCTGATCTACTTCACGCC
AGTACATGAAGACAAGATCTGCTT
Found at i:47717578 original size:181 final size:178
Alignment explanation
Indices: 47717050--47717981 Score: 1226
Period size: 181 Copynumber: 5.2 Consensus size: 178
47717040 AAATCCGCCA
* * * * * * *
47717050 TCTTCGATCTGCTTCGTCACCAGTATGGGAAGACAAGATCCGCTTTCT-TCGATCTACTTCGCCA
1 TCTTTGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCTCT-GATCTACTTC-ACG
*** * * * * * * * * *** *
47717114 CCAGTATGGGAAGACAAGATCGGGTATCTTTGATCTACTTC-ACGCCAATACATGAAGACAAGAT
64 CCAGTACATGAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGAT
* * *
47717178 CTGTTTTCT-TCGATCTACTTCACGCCAATACATGAAGACAAGATCTGTTT
129 CTGTTATCTCT-GATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
* * * * * *** *
47717228 TCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCC
1 TCTTTGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCTCTGATCTACTTCACGCC
* * * * *
47717292 AGTACACGAAGACAATATCTGCTTTCTTCGATCTGTTTCACCACCAGTATGGGAAGACAAGATCT
66 AGTACATGAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCT
* *
47717357 GTTATCTTTGATCTACTTCACGCCAGTATATGAAGACAAGATCTGCTT
131 GTTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
47717405 TCTTTGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCTCTGATCTACTTCACGCC
1 TCTTTGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCTCTGATCTACTTCACGCC
*
47717470 AGTACATGAAGACAAGATCTGCTTTTTCCTTCGATCTGCTTCGCAACCAGTATGGGAAGGCAAGA
66 AGTACATGAAGACAAGATCTGC--TTT-CTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGA
* *
47717535 TTTGTTATCTCTGATCTACTTCACGCTAGTACATGAAGACAAGATCTGCTT
128 TCTGTTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
*
47717586 TCTTTGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCC
1 TCTTTGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCTCTGATCTACTTCACGCC
*
47717651 AGTACATGAAGACAAGATCTGCTTTTTCCTTCGATCTGCTTCGCCACCAGTATAGGAAGGCAAGA
66 AGTACATGAAGACAAGATCTGC--TTT-CTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGA
47717716 TCTGTTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
128 TCTGTTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
** *
47717767 TCTTTGATCTGCTTCGCCACCAGTATGGGAAGGTAAGATCTGGTATCTCTGATCTACTTCACTCC
1 TCTTTGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCTCTGATCTACTTCACGCC
* * *
47717832 AGTACATGAAGACAAGATCTACTTTCTTTGATCTGCTTTGCCACCAGTATGGGAAGGCAAGATCT
66 AGTACATGAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCT
*
47717897 AG-TATCTCTGATCTACTTCACGCTAGTACATGAAGACAAGATCTGCTT
131 -GTTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
* * * *
47717945 TCTTCGATCTACTTCACCATCAGTATGGGAAGACAAG
1 TCTTTGATCTGCTTCGCCACCAGTATGGGAAGACAAG
47717982 TATGGGAAGA
Statistics
Matches: 677, Mismatches: 69, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
176 32 0.05
177 107 0.16
178 191 0.28
179 4 0.01
180 3 0.00
181 340 0.50
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30
Consensus pattern (178 bp):
TCTTTGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGGTATCTCTGATCTACTTCACGCC
AGTACATGAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCT
GTTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
Found at i:47717626 original size:270 final size:267
Alignment explanation
Indices: 47717050--47717981 Score: 1203
Period size: 270 Copynumber: 3.5 Consensus size: 267
47717040 AAATCCGCCA
* * *
47717050 TCTTCGATCTGCTTCGTCACCAGTATGGGAAGACAAGATCCGCTT-TCT-TCGATCTACTTCGCC
1 TCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTG-TTATCTCT-GATCTACTTC-AC
* *** * * * * * * * * *
47717113 ACCAGTATGGGAAGACAAGATCGGGTATCTTTGATCTACTTC-ACGCCAATACATGAAGACAAGA
63 GCCAGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATAGGAAGACAAGA
* * *
47717177 TCTGTTTTCT-TCGATCTACTTCACGCCAATACATGAAGACAAGATCTG-TTTTCTTCGATCTAC
128 TCTGTTATCTCT-GATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTCTTCGATCTGC
* * * *** * * *
47717240 TTCACGCCAATACATGAAGACAAGATCTGGTATCTTTGATCTACTTCACGCCAGTACACGAAGAC
192 TTCGCACCAGTATGGGAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGAC
*
47717305 AATATCTGCTT
257 AAGATCTGCTT
* * *
47717316 TCTTCGATCTGTTTCACCACCAGTATGGGAAGACAAGATCTGTTATCTTTGATCTACTTCACGCC
1 TCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTCTGATCTACTTCACGCC
* * * *
47717381 AGTATATGAAGACAAGATCTGCTTTCTTTGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCT
66 AGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATAGGAAGACAAGATCT
*
47717446 GGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTTCCTTCGATCTGCTT
131 GTTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGC-TTTT-CTTCGATCTGCTT
* * *
47717511 CGCAACCAGTATGGGAAGGCAAGATTTGTTATCTCTGATCTACTTCACGCTAGTACATGAAGACA
194 CGC-ACCAGTATGGGAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGACA
47717576 AGATCTGCTT
258 AGATCTGCTT
* * *
47717586 TCTTTGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCC
1 TCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTCTGATCTACTTCACGCC
* *
47717651 AGTACATGAAGACAAGATCTGCTTTTTCCTTCGATCTGCTTCGCCACCAGTATAGGAAGGCAAGA
66 AGTACATGAAGACAAGATCTGC--TTT-CTTCGATCTACTTCGCCACCAGTATAGGAAGACAAGA
*
47717716 TCTGTTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGC-TTTCTTTGATCTGCT
128 TCTGTTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTCTTCGATCTGCT
* *
47717780 TCGCCACCAGTATGGGAAGGTAAGATCTGGTATCTCTGATCTACTTCACTCCAGTACATGAAGAC
193 TCG-CACCAGTATGGGAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGAC
*
47717845 AAGATCTACTT
257 AAGATCTGCTT
* * *
47717856 TCTTTGATCTGCTTTGCCACCAGTATGGGAAGGCAAGATCTAG-TATCTCTGATCTACTTCACGC
1 TCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCT-GTTATCTCTGATCTACTTCACGC
* * * *
47717920 TAGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACCATCAGTATGGGAAGACAAG
65 CAGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATAGGAAGACAAG
47717982 TATGGGAAGA
Statistics
Matches: 593, Mismatches: 60, Indels: 25
0.87 0.09 0.04
Matches are distributed among these distances:
265 38 0.06
266 110 0.19
267 33 0.06
268 7 0.01
269 14 0.02
270 301 0.51
271 5 0.01
272 3 0.01
273 82 0.14
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30
Consensus pattern (267 bp):
TCTTCGATCTGCTTCGCCACCAGTATGGGAAGACAAGATCTGTTATCTCTGATCTACTTCACGCC
AGTACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATAGGAAGACAAGATCT
GTTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTCTTCGATCTGCTTCG
CACCAGTATGGGAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGA
TCTGCTT
Found at i:47717985 original size:14 final size:14
Alignment explanation
Indices: 47717966--47717995 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
47717956 CTTCACCATC
47717966 AGTATGGGAAGACA
1 AGTATGGGAAGACA
47717980 AGTATGGGAAGACA
1 AGTATGGGAAGACA
47717994 AG
1 AG
47717996 ATCTGCTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.43, C:0.07, G:0.37, T:0.13
Consensus pattern (14 bp):
AGTATGGGAAGACA
Found at i:47717999 original size:59 final size:59
Alignment explanation
Indices: 47717928--47718040 Score: 190
Period size: 59 Copynumber: 1.9 Consensus size: 59
47717918 GCTAGTACAT
*
47717928 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACCATCAGTATGGGAAGACAAGTATGG
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGTATGG
* * *
47717987 GAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAG
1 GAAGACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAG
47718041 ATCTGGTATC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 50 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (59 bp):
GAAGACAAGATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGTATGG
Found at i:47718042 original size:148 final size:150
Alignment explanation
Indices: 47717839--47718132 Score: 484
Period size: 148 Copynumber: 2.0 Consensus size: 150
47717829 TCCAGTACAT
* *
47717839 GAAGACAAGATCTACTTTCTTTGATCTGCTTTGCCACCAGTATGGGAAGGCAAGATCTAGTATCT
1 GAAGACAAGATCTACTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTAGTATCT
* *
47717904 CTGATCTACTTCACGCTAGTACATGAAGACAAGATCTGC-TTT-CTTCGATCTACTTCACCATCA
66 CTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTCCTTCGATCTACTTCACCACCA
47717967 GTATGGGAAGACAAGTATGG
131 GTATGGGAAGACAAGTATGG
* *
47717987 GAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCT
1 GAAGACAAGATCTACTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTAGTATCT
* *
47718052 CTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTTCCTTCGATCTGCTTCGCCACC
66 CTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGC-TTTTCCTTCGATCTACTTCACCACC
*
47718117 AGTATGGGAAGGCAAG
130 AGTATGGGAAGACAAG
47718133 ATCTGGTATC
Statistics
Matches: 134, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
148 99 0.74
150 3 0.02
151 32 0.24
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (150 bp):
GAAGACAAGATCTACTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTAGTATCT
CTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTCCTTCGATCTACTTCACCACCA
GTATGGGAAGACAAGTATGG
Found at i:47718212 original size:240 final size:237
Alignment explanation
Indices: 47717750--47718221 Score: 809
Period size: 240 Copynumber: 2.0 Consensus size: 237
47717740 GCCAGTACAT
* *
47717750 GAAGACAAGATCTGCTTTCTTTGATCTGCTTCGCCACCAGTATGGGAAGGTAAGATCTGGTATCT
1 GAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCT
* * *
47717815 CTGATCTACTTCACTCCAGTACATGAAGACAAGATCTACTTTCTTTGATCTGCTTTGCCACCAGT
66 CTGATCTACTTCACGCCAGTACATGAAGACAAGATCTACTTTCTTCGATCTGCTTCGCCACCAGT
*
47717880 ATGGGAAGGCAAGATCTAGTATCTCTGATCTACTTCACGCTAGTACATGAAGACAAGATCTGCTT
131 ATGGGAAGGCAAGATCTAGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
*
47717945 TCTTCGATCTACTTCACCATCAGTATGGGAAGACAAGTATGG
196 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGTATGG
47717987 GAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCT
1 GAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCT
*
47718052 CTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTTTTTCCTTCGATCTGCTTCGCCACC
66 CTGATCTACTTCACGCCAGTACATGAAGACAAGATCTAC--TTT-CTTCGATCTGCTTCGCCACC
*
47718117 AGTATGGGAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTG
128 AGTATGGGAAGGCAAGATCTAGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTG
* * *
47718182 CTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAG
193 CTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAG
47718222 ATCTGGTATC
Statistics
Matches: 220, Mismatches: 12, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
237 100 0.45
239 3 0.01
240 117 0.53
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (237 bp):
GAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCT
CTGATCTACTTCACGCCAGTACATGAAGACAAGATCTACTTTCTTCGATCTGCTTCGCCACCAGT
ATGGGAAGGCAAGATCTAGTATCTCTGATCTACTTCACGCCAGTACATGAAGACAAGATCTGCTT
TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGTATGG
Found at i:47718248 original size:89 final size:89
Alignment explanation
Indices: 47717987--47718321 Score: 591
Period size: 89 Copynumber: 3.7 Consensus size: 89
47717977 ACAAGTATGG
47717987 GAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCT
1 GAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCT
47718052 CTGATCTACTTCACGCCAGTACAT
66 CTGATCTACTTCACGCCAGTACAT
47718076 GAAGACAAGATCTGCTTTTTCCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTA
1 GAAGACAAGATCTGC--TTT-CTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTA
47718141 TCTCTGATCTACTTCACGCCAGTACAT
63 TCTCTGATCTACTTCACGCCAGTACAT
47718168 GAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCT
1 GAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCT
47718233 CTGATCTACTTCACGCCAGTACAT
66 CTGATCTACTTCACGCCAGTACAT
* * * *
47718257 GAAGACAAGATCTACTTTCGTT-GATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCTATC
1 GAAGACAAGATCTGCTTTC-TTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATC
47718321 T
65 T
47718322 TTTCAACCTG
Statistics
Matches: 238, Mismatches: 4, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
89 144 0.61
90 5 0.02
91 3 0.01
92 86 0.36
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.28
Consensus pattern (89 bp):
GAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGGTATCT
CTGATCTACTTCACGCCAGTACAT
Found at i:47718282 original size:44 final size:43
Alignment explanation
Indices: 47717987--47718322 Score: 240
Period size: 45 Copynumber: 7.5 Consensus size: 43
47717977 ACAAGTATGG
* * * ***
47717987 GAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGG
1 GAAGACAAGATCTGCTTTCTT-GATCTACTTC-ACGCCAGTACAT
* * *
47718032 GAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACAT
1 GAAGACAAGATCTGCTTTCT-TGATCTACTTCACGCCAGTACAT
* * * ***
47718076 GAAGACAAGATCTGCTTTTTCCTTCGATCTGCTTCGCCACCAGTATGG
1 GAAGACAAGATCTGC--TTT-CTT-GATCTACTTC-ACGCCAGTACAT
* * *
47718124 GAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACAT
1 GAAGACAAGATCTGCTTTCT-TGATCTACTTCACGCCAGTACAT
* * * ***
47718168 GAAGACAAGATCTGCTTTCTTCGATCTGCTTCGCCACCAGTATGG
1 GAAGACAAGATCTGCTTTCTT-GATCTACTTC-ACGCCAGTACAT
* * *
47718213 GAAGGCAAGATCTGGTATCTCTGATCTACTTCACGCCAGTACAT
1 GAAGACAAGATCTGCTTTCT-TGATCTACTTCACGCCAGTACAT
* * * ***
47718257 GAAGACAAGATCTACTTTCGTTGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGCTTTC-TTGATCTACTTC-ACGCCAGTACAT
*
47718302 GAAGACAAGATCTGCTATCTT
1 GAAGACAAGATCTGCTTTCTT
47718323 TTCAACCTGC
Statistics
Matches: 223, Mismatches: 56, Indels: 25
0.73 0.18 0.08
Matches are distributed among these distances:
43 1 0.00
44 88 0.39
45 95 0.43
46 8 0.04
47 11 0.05
48 20 0.09
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (43 bp):
GAAGACAAGATCTGCTTTCTTGATCTACTTCACGCCAGTACAT
Found at i:47722980 original size:16 final size:16
Alignment explanation
Indices: 47722959--47722989 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
47722949 TTCTATAATG
47722959 AAATGCCATGCAGTCT
1 AAATGCCATGCAGTCT
*
47722975 AAATGCTATGCAGTC
1 AAATGCCATGCAGTC
47722990 AAAGTGAAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (16 bp):
AAATGCCATGCAGTCT
Found at i:47724847 original size:10 final size:10
Alignment explanation
Indices: 47724832--47724858 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
47724822 TAAATATAGG
47724832 AATAATAATA
1 AATAATAATA
47724842 AATAATAATA
1 AATAATAATA
47724852 AATAATA
1 AATAATA
47724859 TAGTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (10 bp):
AATAATAATA
Found at i:47725401 original size:25 final size:24
Alignment explanation
Indices: 47725365--47725414 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
47725355 ATTATTTCAC
*
47725365 AAAACAAATAAAAAAGAAAAGAGA
1 AAAAAAAATAAAAAAGAAAAGAGA
* *
47725389 AAAAAAAAGTAAAAATGAAAATAGA
1 AAAAAAAA-TAAAAAAGAAAAGAGA
47725414 A
1 A
47725415 TAAACGCGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.78, C:0.02, G:0.12, T:0.08
Consensus pattern (24 bp):
AAAAAAAATAAAAAAGAAAAGAGA
Found at i:47728456 original size:3 final size:3
Alignment explanation
Indices: 47728450--47728480 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
47728440 TAATCTTCTT
47728450 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
47728481 NNNNNNNNNN
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:47730646 original size:21 final size:20
Alignment explanation
Indices: 47730617--47730655 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
47730607 TCGTGGACCA
* *
47730617 AAATTGTTTTTTAATAAAATC
1 AAATCGTTTATTAA-AAAATC
47730638 AAATCGTTTATTAAAAAA
1 AAATCGTTTATTAAAAAA
47730656 CCACTTTTCG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (20 bp):
AAATCGTTTATTAAAAAATC
Found at i:47733020 original size:9 final size:9
Alignment explanation
Indices: 47733006--47733035 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
47732996 AATTAGGGTT
47733006 ATAAAAATA
1 ATAAAAATA
47733015 ATAAAAATA
1 ATAAAAATA
47733024 ATAATAAATA
1 ATAA-AAATA
47733034 AT
1 AT
47733036 CTAAAGTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 13 0.65
10 7 0.35
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (9 bp):
ATAAAAATA
Found at i:47746529 original size:29 final size:29
Alignment explanation
Indices: 47746483--47746553 Score: 117
Period size: 29 Copynumber: 2.4 Consensus size: 29
47746473 TGTTATTGGG
*
47746483 AAAGAGAAAAAA-AACTAAAAATTTAAAA
1 AAAGAAAAAAAATAACTAAAAATTTAAAA
47746511 AAAGAAAAAAAATAACTAAAAATTTAAAA
1 AAAGAAAAAAAATAACTAAAAATTTAAAA
47746540 AAAGAAATAAAAAT
1 AAAGAAA-AAAAAT
47746554 CCCAGATATG
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
28 11 0.28
29 23 0.57
30 6 0.15
ACGTcount: A:0.76, C:0.03, G:0.06, T:0.15
Consensus pattern (29 bp):
AAAGAAAAAAAATAACTAAAAATTTAAAA
Found at i:47746539 original size:20 final size:20
Alignment explanation
Indices: 47746516--47746553 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
47746506 TAAAAAAAGA
* *
47746516 AAAAAAATAACTAAAAATTT
1 AAAAAAAGAAATAAAAATTT
47746536 AAAAAAAGAAATAAAAAT
1 AAAAAAAGAAATAAAAAT
47746554 CCCAGATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.76, C:0.03, G:0.03, T:0.18
Consensus pattern (20 bp):
AAAAAAAGAAATAAAAATTT
Found at i:47747004 original size:20 final size:20
Alignment explanation
Indices: 47746979--47747022 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
47746969 AAATTACAGT
47746979 AAAGGAATTGAAAATATTGA
1 AAAGGAATTGAAAATATTGA
47746999 AAAGGAATTGAAAATATTGA
1 AAAGGAATTGAAAATATTGA
47747019 AAAG
1 AAAG
47747023 TAAAGGAGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23
Consensus pattern (20 bp):
AAAGGAATTGAAAATATTGA
Found at i:47748552 original size:17 final size:18
Alignment explanation
Indices: 47748532--47748568 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
47748522 ATATCTTTAC
*
47748532 AAAT-AATATTTAAATAA
1 AAATAAATATTAAAATAA
47748549 AAATAAATATTAAAATAA
1 AAATAAATATTAAAATAA
47748567 AA
1 AA
47748569 TCATCCTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (18 bp):
AAATAAATATTAAAATAA
Found at i:47754816 original size:40 final size:42
Alignment explanation
Indices: 47754738--47754893 Score: 145
Period size: 40 Copynumber: 3.5 Consensus size: 42
47754728 ATAAATACCA
*
47754738 AAAAATTATTTTAAAAATTAAAATAAAAATTTAAAAAAGTATTTT
1 AAAAA-TATTTT-AAAATT-AAATAAAAATTAAAAAAAGTATTTT
47754783 AAAAATATTTTAAAATT-AA-AAAAATTAAAAAAAGTATTTT
1 AAAAATATTTTAAAATTAAATAAAAATTAAAAAAAGTATTTT
* *
47754823 AAAAATATTTAAAAAAAATTTTAAAATTAAAAAAATTTAAAAAAGTATTTT
1 AAAAATATTT---TAAAA--TT-AAA-T--AAAAATTAAAAAAAGTATTTT
* *
47754874 AAAAGTATTTTAAAGTTAAA
1 AAAAATATTTTAAAATTAAA
47754894 AAAGGGCCGT
Statistics
Matches: 94, Mismatches: 6, Indels: 22
0.77 0.05 0.18
Matches are distributed among these distances:
40 30 0.32
41 2 0.02
43 10 0.11
44 6 0.06
45 10 0.11
46 2 0.02
47 2 0.02
48 3 0.03
51 29 0.31
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (42 bp):
AAAAATATTTTAAAATTAAATAAAAATTAAAAAAAGTATTTT
Found at i:47754827 original size:23 final size:22
Alignment explanation
Indices: 47754798--47754848 Score: 68
Period size: 24 Copynumber: 2.3 Consensus size: 22
47754788 TATTTTAAAA
47754798 TTAAAAA-AATTAAAAAAAGTATT
1 TTAAAAATAATTAAAAAAA--ATT
*
47754821 TTAAAAATATTTAAAAAAAATT
1 TTAAAAATAATTAAAAAAAATT
47754843 TTAAAA
1 TTAAAA
47754849 TTAAAAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
22 9 0.35
23 7 0.27
24 10 0.38
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (22 bp):
TTAAAAATAATTAAAAAAAATT
Found at i:47754838 original size:51 final size:51
Alignment explanation
Indices: 47754750--47754883 Score: 189
Period size: 51 Copynumber: 2.6 Consensus size: 51
47754740 AAATTATTTT
* * * *
47754750 AAAAATTAAAATAAA-AATTTAAAAAAGTATTTTAAAAATATTTTAAAATTAA
1 AAAAATTAAAA-AAAGTATTTTAAAAA-TATTTAAAAAAAATTTTAAAATTAA
47754802 AAAAATTAAAAAAAGTATTTTAAAAATATTTAAAAAAAATTTTAAAATTAA
1 AAAAATTAAAAAAAGTATTTTAAAAATATTTAAAAAAAATTTTAAAATTAA
* *
47754853 AAAAATTTAAAAAAGTATTTTAAAAGTATTT
1 AAAAATTAAAAAAAGTATTTTAAAAATATTT
47754884 TAAAGTTAAA
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
51 55 0.73
52 20 0.27
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (51 bp):
AAAAATTAAAAAAAGTATTTTAAAAATATTTAAAAAAAATTTTAAAATTAA
Found at i:47754857 original size:9 final size:10
Alignment explanation
Indices: 47754762--47754866 Score: 60
Period size: 10 Copynumber: 10.4 Consensus size: 10
47754752 AAATTAAAAT
47754762 AAAAATTTAA
1 AAAAATTTAA
47754772 AAAAGTATTTTAA
1 AAAA--A-TTTAA
*
47754785 AAATATTT--
1 AAAAATTTAA
*
47754793 TAAAA-TTAA
1 AAAAATTTAA
*
47754802 AAAAATTAAA
1 AAAAATTTAA
47754812 AAAAGTATTTTAA
1 AAAA--A-TTTAA
*
47754825 AAATATTTAAA
1 AAAAATTT-AA
47754836 AAAAATTT--
1 AAAAATTTAA
*
47754844 TAAAA-TTAA
1 AAAAATTTAA
47754853 AAAAATTTAA
1 AAAAATTTAA
47754863 AAAA
1 AAAA
47754867 GTATTTTAAA
Statistics
Matches: 72, Mismatches: 10, Indels: 26
0.67 0.09 0.24
Matches are distributed among these distances:
7 4 0.06
8 7 0.10
9 8 0.11
10 25 0.35
11 11 0.15
12 2 0.03
13 15 0.21
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (10 bp):
AAAAATTTAA
Found at i:47759973 original size:50 final size:50
Alignment explanation
Indices: 47759898--47759998 Score: 175
Period size: 50 Copynumber: 2.0 Consensus size: 50
47759888 GCATTATTAT
*
47759898 AATCAATGTCAAATAAAAGAAGAGTAGTTCTATATTGATTCTACTTGTGC
1 AATCAATGTCAAATAAAAGAAGAGTAGTTCTATATGGATTCTACTTGTGC
* *
47759948 AATCAATGTCAAATAGAAGAAGAGTAGTTCTATATGGATTGTACTTGTGC
1 AATCAATGTCAAATAAAAGAAGAGTAGTTCTATATGGATTCTACTTGTGC
47759998 A
1 A
47759999 GCCTAATCCT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.33
Consensus pattern (50 bp):
AATCAATGTCAAATAAAAGAAGAGTAGTTCTATATGGATTCTACTTGTGC
Found at i:47761439 original size:20 final size:20
Alignment explanation
Indices: 47761414--47761457 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
47761404 GTTAGAGAAT
47761414 TTTTTAGATTTTTTTTAACA
1 TTTTTAGATTTTTTTTAACA
47761434 TTTTTAGATTTTTTTTAACA
1 TTTTTAGATTTTTTTTAACA
47761454 TTTT
1 TTTT
47761458 ACTTTAATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.23, C:0.05, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTTAGATTTTTTTTAACA
Found at i:47764409 original size:13 final size:13
Alignment explanation
Indices: 47764391--47764416 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
47764381 AAAGTGTGAG
47764391 CCTGTTGAAGACA
1 CCTGTTGAAGACA
47764404 CCTGTTGAAGACA
1 CCTGTTGAAGACA
47764417 ATATGTAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (13 bp):
CCTGTTGAAGACA
Found at i:47781856 original size:37 final size:36
Alignment explanation
Indices: 47781815--47781884 Score: 106
Period size: 36 Copynumber: 1.9 Consensus size: 36
47781805 TTAAAATATT
47781815 TTTTATATTTTT-AATAATTTTTAAAATTTGTAAATGA
1 TTTTATATTTTTCAA-AA-TTTTAAAATTTGTAAATGA
*
47781852 TTTTATATTTTTCAAAATTTTAAAATTTTTAAA
1 TTTTATATTTTTCAAAATTTTAAAATTTGTAAA
47781885 AATAATTGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
36 15 0.48
37 14 0.45
38 2 0.06
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.57
Consensus pattern (36 bp):
TTTTATATTTTTCAAAATTTTAAAATTTGTAAATGA
Found at i:47781887 original size:10 final size:9
Alignment explanation
Indices: 47781821--47781885 Score: 55
Period size: 9 Copynumber: 7.1 Consensus size: 9
47781811 TATTTTTTAT
47781821 ATTTTTAATA
1 ATTTTTAA-A
47781831 ATTTTTAAA
1 ATTTTTAAA
*
47781840 ATTTGT-AA
1 ATTTTTAAA
*
47781848 ATGATTTT-AT
1 AT--TTTTAAA
47781858 ATTTTTCAAA
1 ATTTTT-AAA
47781868 A-TTTTAAA
1 ATTTTTAAA
47781876 ATTTTTAAA
1 ATTTTTAAA
47781885 A
1 A
47781886 ATAATTGTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
8 12 0.26
9 18 0.39
10 16 0.35
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.54
Consensus pattern (9 bp):
ATTTTTAAA
Found at i:47784128 original size:14 final size:14
Alignment explanation
Indices: 47784109--47784137 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
47784099 TTTGGATTAA
47784109 ATTTGAATTATTTT
1 ATTTGAATTATTTT
47784123 ATTTGAATTATTTT
1 ATTTGAATTATTTT
47784137 A
1 A
47784138 GATCAAAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (14 bp):
ATTTGAATTATTTT
Found at i:47785014 original size:20 final size:20
Alignment explanation
Indices: 47784967--47785014 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
47784957 AACTGATTTT
**
47784967 ATTACTTTTTAAATAATTTTT
1 ATTA-TTTTTAAATAATTTAA
* *
47784988 ATAATTTTTTAATAATTTAA
1 ATTATTTTTAAATAATTTAA
47785008 ATTATTT
1 ATTATTT
47785015 AATTAAAATC
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
20 19 0.86
21 3 0.14
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (20 bp):
ATTATTTTTAAATAATTTAA
Found at i:47788018 original size:65 final size:66
Alignment explanation
Indices: 47787913--47788044 Score: 257
Period size: 65 Copynumber: 2.0 Consensus size: 66
47787903 TTTAAGGGGA
47787913 TCAAAGTGATTTTTTTTTAGTTTTAGGGTGGCCTGACCCCTACCAGCTCCCTTGGCGTCGTCCTT
1 TCAAAGTGATTTTTTTTTAGTTTTAGGGTGGCCTGACCCCTACCAGCTCCCTTGGCGTCGTCCTT
47787978 G
66 G
47787979 TCAAAGTGA-TTTTTTTTAGTTTTAGGGTGGCCTGACCCCTACCAGCTCCCTTGGCGTCGTCCTT
1 TCAAAGTGATTTTTTTTTAGTTTTAGGGTGGCCTGACCCCTACCAGCTCCCTTGGCGTCGTCCTT
47788043 G
66 G
47788044 T
1 T
47788045 TTTGCCCACT
Statistics
Matches: 66, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
65 57 0.86
66 9 0.14
ACGTcount: A:0.14, C:0.26, G:0.23, T:0.38
Consensus pattern (66 bp):
TCAAAGTGATTTTTTTTTAGTTTTAGGGTGGCCTGACCCCTACCAGCTCCCTTGGCGTCGTCCTT
G
Found at i:47788399 original size:20 final size:20
Alignment explanation
Indices: 47788374--47788412 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
47788364 AGAAAACTAT
47788374 ATATGCATGGTCCAGCTTAC
1 ATATGCATGGTCCAGCTTAC
*
47788394 ATATGCATTGTCCAGCTTA
1 ATATGCATGGTCCAGCTTA
47788413 TCACGATTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.33
Consensus pattern (20 bp):
ATATGCATGGTCCAGCTTAC
Found at i:47797959 original size:2 final size:2
Alignment explanation
Indices: 47797952--47797993 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
47797942 CAAACCTATT
47797952 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
47797994 CCCATAATGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:47802573 original size:16 final size:17
Alignment explanation
Indices: 47802547--47802579 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
47802537 GTTCTTTAAA
*
47802547 CATTCCTCTTTTTTTTC
1 CATTCCTCTTTTGTTTC
47802564 CATT-CTCTTTTGTTTC
1 CATTCCTCTTTTGTTTC
47802580 TCCCTCTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.06, C:0.27, G:0.03, T:0.64
Consensus pattern (17 bp):
CATTCCTCTTTTGTTTC
Found at i:47802711 original size:14 final size:14
Alignment explanation
Indices: 47802675--47802708 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
47802665 TCATCATTTG
47802675 CCTATAACCAAAAC
1 CCTATAACCAAAAC
47802689 CCTATAACCAAAAC
1 CCTATAACCAAAAC
47802703 CC-ATAA
1 CCTATAA
47802709 ACCCATGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.50, C:0.35, G:0.00, T:0.15
Consensus pattern (14 bp):
CCTATAACCAAAAC
Found at i:47807016 original size:31 final size:30
Alignment explanation
Indices: 47806954--47807033 Score: 78
Period size: 31 Copynumber: 2.7 Consensus size: 30
47806944 AATAAATTTT
*
47806954 TTAAATCAATATCAAAGTTTCATGTGAATAA
1 TTAAATCAAAATCAAAGTTTCATGT-AATAA
*
47806985 TTAAATCAAAATTAAAGTTCTACATGT-ATAA
1 TTAAATCAAAATCAAAGTT-T-CATGTAATAA
47807016 TT--ATGC-AAATCAAAGTTT
1 TTAAAT-CAAAATCAAAGTTT
47807034 ATGGATCACA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
28 1 0.02
29 12 0.28
30 1 0.02
31 23 0.53
32 1 0.02
33 5 0.12
ACGTcount: A:0.45, C:0.10, G:0.09, T:0.36
Consensus pattern (30 bp):
TTAAATCAAAATCAAAGTTTCATGTAATAA
Found at i:47813911 original size:23 final size:24
Alignment explanation
Indices: 47813860--47813912 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
47813850 GCATAAGTTG
*
47813860 TGAA-TTTAATCTTTGTACTTTGA
1 TGAATTTTAATCTTTATACTTTGA
* *
47813883 TCAATTTTAATCTTTATACTTT-T
1 TGAATTTTAATCTTTATACTTTGA
47813906 TGAATTT
1 TGAATTT
47813913 GTCAATTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
23 9 0.36
24 16 0.64
ACGTcount: A:0.26, C:0.09, G:0.08, T:0.57
Consensus pattern (24 bp):
TGAATTTTAATCTTTATACTTTGA
Found at i:47815953 original size:19 final size:19
Alignment explanation
Indices: 47815916--47815953 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
47815906 TTATTATTCT
*
47815916 TTTTTTTATATTAATCATA
1 TTTTTTTATATTAAACATA
47815935 TTTTTTTAGTA-TAAACATA
1 TTTTTTTA-TATTAAACATA
47815954 AATTTCTATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 15 0.88
20 2 0.12
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (19 bp):
TTTTTTTATATTAAACATA
Found at i:47816655 original size:105 final size:105
Alignment explanation
Indices: 47816497--47816705 Score: 301
Period size: 105 Copynumber: 2.0 Consensus size: 105
47816487 GAGTCCAAAT
* * * * * *
47816497 GATCGTCTAGAGATCAATCTCGAGATTAATGTCAACTAAAAACTCGAATATATATCTTTTGTCAT
1 GATCATCTAGAAATCAATCTCGAGACTAATATCAACTAAAAACTCGAACATATATCTTTTGTCAC
* *
47816562 TTCACTTATGATTCTACCGACTCCTCGTACTTTCATTTAA
66 TTCACTTATGATTCAACCGACTCCTCATACTTTCATTTAA
* *
47816602 GATCATCTAGAAATCGATCTCGAGACTAATATCAATTAAAAACTCGAACATATATCTTTTGTCAC
1 GATCATCTAGAAATCAATCTCGAGACTAATATCAACTAAAAACTCGAACATATATCTTTTGTCAC
* * *
47816667 TTCACTTGTGATTCAACTGACTTCTCATACTTTCATTTA
66 TTCACTTATGATTCAACCGACTCCTCATACTTTCATTTA
47816706 CCGCATGACG
Statistics
Matches: 91, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
105 91 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.37
Consensus pattern (105 bp):
GATCATCTAGAAATCAATCTCGAGACTAATATCAACTAAAAACTCGAACATATATCTTTTGTCAC
TTCACTTATGATTCAACCGACTCCTCATACTTTCATTTAA
Found at i:47818958 original size:87 final size:88
Alignment explanation
Indices: 47818846--47819021 Score: 345
Period size: 87 Copynumber: 2.0 Consensus size: 88
47818836 AAGTGAAATG
47818846 AAGTGAAACACTGTCAAAATATAAAACTCAAATATATATATATATATTCTTTTTTTCTTTCTATT
1 AAGTGAAACACTGTCAAAATATAAAACTCAAATATATATATATATATTCTTTTTTTCTTTCTATT
47818911 GACTAAAACCATTTGATTATATC
66 GACTAAAACCATTTGATTATATC
47818934 AAGTGAAACA-TGTCAAAATATAAAACTCAAATATATATATATATATTCTTTTTTTCTTTCTATT
1 AAGTGAAACACTGTCAAAATATAAAACTCAAATATATATATATATATTCTTTTTTTCTTTCTATT
47818998 GACTAAAACCATTTGATTATATC
66 GACTAAAACCATTTGATTATATC
47819021 A
1 A
47819022 CAATCAAAGA
Statistics
Matches: 88, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
87 78 0.89
88 10 0.11
ACGTcount: A:0.40, C:0.13, G:0.06, T:0.41
Consensus pattern (88 bp):
AAGTGAAACACTGTCAAAATATAAAACTCAAATATATATATATATATTCTTTTTTTCTTTCTATT
GACTAAAACCATTTGATTATATC
Found at i:47821604 original size:24 final size:26
Alignment explanation
Indices: 47821576--47821624 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
47821566 TATTAAAATT
*
47821576 TGTTTTTGCC-TT-TTTAAATATTGA
1 TGTTTTTACCATTCTTTAAATATTGA
47821600 TGTTTTTACCATTTCTTTAAATATT
1 TGTTTTTACCA-TTCTTTAAATATT
47821625 AAAATATTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 9 0.43
26 2 0.10
27 10 0.48
ACGTcount: A:0.22, C:0.10, G:0.08, T:0.59
Consensus pattern (26 bp):
TGTTTTTACCATTCTTTAAATATTGA
Found at i:47823265 original size:13 final size:12
Alignment explanation
Indices: 47823247--47823280 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
47823237 TATTTTTCGA
47823247 GTTTAATATTTTT
1 GTTTAAT-TTTTT
47823260 GTTTAATTTTTT
1 GTTTAATTTTTT
47823272 -TTTAATTTT
1 GTTTAATTTT
47823281 CAAAAAGAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.43
12 5 0.24
13 7 0.33
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (12 bp):
GTTTAATTTTTT
Found at i:47827732 original size:7 final size:7
Alignment explanation
Indices: 47827720--47827754 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
47827710 CAAGAACTTC
47827720 AAATAAA
1 AAATAAA
47827727 AAATAAA
1 AAATAAA
47827734 AAATAAA
1 AAATAAA
47827741 AAATAAA
1 AAATAAA
*
47827748 AACTAAA
1 AAATAAA
47827755 TGCCAAGTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (7 bp):
AAATAAA
Found at i:47830740 original size:15 final size:15
Alignment explanation
Indices: 47830720--47830757 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
47830710 CAGAATCATA
47830720 TTTTTAACT-ATTTAT
1 TTTTTAA-TGATTTAT
47830735 TTTTTAATGATTTAT
1 TTTTTAATGATTTAT
47830750 TTATTTAA
1 TT-TTTAA
47830758 ATCGGATGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 1 0.05
15 15 0.71
16 5 0.24
ACGTcount: A:0.29, C:0.03, G:0.03, T:0.66
Consensus pattern (15 bp):
TTTTTAATGATTTAT
Found at i:47831930 original size:94 final size:92
Alignment explanation
Indices: 47831759--47832248 Score: 429
Period size: 94 Copynumber: 5.3 Consensus size: 92
47831749 TGAGCACCTT
* * * * *
47831759 TATTCCCTATTCAATATGGGATTAAAATTAACCTTTTAATGAAAATGATGAAGAAATTGTCACTT
1 TATTCTCTAGTCAATGTGGGATTAAAATTAA-CTTTTAATGAAAATGATAAAGAAATTGTCACTA
* *
47831824 ATTTACAAGGTAAATGTAAGATATGAGAG
65 ATTTATAGGGTAAATGTAAG-TATGAGAG
* * * * *
47831853 TGTTTTTTAGTCAATGTGGGATTAAAATTAACTTTTCAATGAAAATGGTAAAGAAATTGACACTA
1 TATTCTCTAGTCAATGTGGGATTAAAATTAACTTTT-AATGAAAATGATAAAGAAATTGTCACTA
* *
47831918 ATTTATAGGGTAAGTGTAAGCATGAGAG
65 ATTTATAGGGTAAATGTAAGTATGAGAG
* * ** * ** * * *
47831946 TATTCTCTAGCCAATGTGAGATTAAAATTAACTTATTAA-G-GGATTA-AAATTAATTTTTAATG
1 TATTCTCTAGTCAATGTGGGATTAAAATTAACTT-TTAATGAAAATGATAAAGAAATTGTCACT-
* * *
47832008 AA--AATAGTGAAG-AAATG--GGCTATGGGAG
64 AATTTATAG-G--GTAAATGTAAG-TATGAGAG
* * * * *
47832036 TATTGTCTAGTCAATGTAGGATTAAAATAAACTTTTTAATGAAAATGATGAAGAAATTGTCACTT
1 TATTCTCTAGTCAATGTGGGATTAAAATTAAC-TTTTAATGAAAATGATAAAGAAATTGTCACTA
* *
47832101 ATTTACAAGGTAAATGTAAGATATGAGAG
65 ATTTATAGGGTAAATGTAAG-TATGAGAG
* * * * *
47832130 TGTTTTTTAGTCAATGTGGGATTAAAATTAACTTTTCAATGAAAATGGTAAAGAAATTGACACTA
1 TATTCTCTAGTCAATGTGGGATTAAAATTAACTTTT-AATGAAAATGATAAAGAAATTGTCACTA
* *
47832195 ATTTATAGGGTAAGTGTAAGCATGAGAG
65 ATTTATAGGGTAAATGTAAGTATGAGAG
* *
47832223 TATTCTCTAGCCAATGTGAGATTAAA
1 TATTCTCTAGTCAATGTGGGATTAAA
47832249 TAAATAAATG
Statistics
Matches: 306, Mismatches: 73, Indels: 35
0.74 0.18 0.08
Matches are distributed among these distances:
89 5 0.02
90 47 0.15
91 12 0.04
92 11 0.04
93 85 0.28
94 146 0.48
ACGTcount: A:0.39, C:0.08, G:0.19, T:0.34
Consensus pattern (92 bp):
TATTCTCTAGTCAATGTGGGATTAAAATTAACTTTTAATGAAAATGATAAAGAAATTGTCACTAA
TTTATAGGGTAAATGTAAGTATGAGAG
Found at i:47838980 original size:29 final size:26
Alignment explanation
Indices: 47838938--47838994 Score: 62
Period size: 30 Copynumber: 2.1 Consensus size: 26
47838928 GAACTATTAT
*
47838938 TTTTTTATATTAATCGAAATAAATAATACA
1 TTTTTTATACTAAT--AAA-AAATAA-ACA
47838968 TTTTTTA-ACTAATAAAAAATAAACA
1 TTTTTTATACTAATAAAAAATAAACA
47838993 TT
1 TT
47838995 AGCAATGTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
25 5 0.19
26 6 0.23
27 3 0.12
29 5 0.19
30 7 0.27
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.42
Consensus pattern (26 bp):
TTTTTTATACTAATAAAAAATAAACA
Found at i:47861847 original size:18 final size:18
Alignment explanation
Indices: 47861807--47861847 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
47861797 ATTCATATTG
47861807 TTTTTATTTTTATTTTCA
1 TTTTTATTTTTATTTTCA
*
47861825 ATTTTA-TTTTATTTATCA
1 TTTTTATTTTTATTT-TCA
47861843 TTTTT
1 TTTTT
47861848 TAATAAAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTATTTTTATTTTCA
Found at i:47863049 original size:88 final size:89
Alignment explanation
Indices: 47862940--47863116 Score: 347
Period size: 88 Copynumber: 2.0 Consensus size: 89
47862930 GCCACCAATT
47862940 CAGTCAATATCTTAATATGGTAAAGATAAATAAATATTTTTTAATTATAAATTAAAGTAATATTT
1 CAGTCAATATCTTAATATGGTAAAGATAAATAAATATTTTTTAATTATAAATTAAAGTAATATTT
47863005 TAATATACAAAAATAAACAAACCC
66 TAATATACAAAAATAAACAAACCC
47863029 CAGTCAATAT-TTAATATGGTAAAGATAAATAAATATTTTTTAATTATAAATTAAAGTAATATTT
1 CAGTCAATATCTTAATATGGTAAAGATAAATAAATATTTTTTAATTATAAATTAAAGTAATATTT
47863093 TAATATACAAAAATAAACAAACCC
66 TAATATACAAAAATAAACAAACCC
47863117 ATTTAACCGA
Statistics
Matches: 88, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
88 78 0.89
89 10 0.11
ACGTcount: A:0.51, C:0.08, G:0.06, T:0.35
Consensus pattern (89 bp):
CAGTCAATATCTTAATATGGTAAAGATAAATAAATATTTTTTAATTATAAATTAAAGTAATATTT
TAATATACAAAAATAAACAAACCC
Found at i:47864278 original size:31 final size:31
Alignment explanation
Indices: 47864238--47864308 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 31
47864228 AAATATTTCG
*
47864238 AATAGTTTAATGACCAAAACGTAAACTTGTT
1 AATAGTTTAATGACCAAAACGTAAACTTATT
* * *
47864269 AATAATTTAATGACGAAAACGTAAATTTATT
1 AATAGTTTAATGACCAAAACGTAAACTTATT
47864300 AATAGTTTA
1 AATAGTTTA
47864309 GTAATCTTGG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.45, C:0.08, G:0.11, T:0.35
Consensus pattern (31 bp):
AATAGTTTAATGACCAAAACGTAAACTTATT
Found at i:47864349 original size:11 final size:10
Alignment explanation
Indices: 47864324--47864348 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
47864314 CTTGGTGTAG
47864324 TTTTTCTTTT
1 TTTTTCTTTT
47864334 TTTTTCTTTT
1 TTTTTCTTTT
47864344 TTTTT
1 TTTTT
47864349 TTGTTGTTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:47867707 original size:22 final size:22
Alignment explanation
Indices: 47867682--47867723 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
47867672 AATATAATTT
*
47867682 TAAAT-TTAATTATAAGAATATA
1 TAAATATTAA-TATAAAAATATA
47867704 TAAATATTAATATAAAAATA
1 TAAATATTAATATAAAAATA
47867724 CATTTTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
TAAATATTAATATAAAAATATA
Found at i:47871736 original size:15 final size:15
Alignment explanation
Indices: 47871716--47871765 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
47871706 TTCAGAGTCT
47871716 TCATCTCTTTCAACA
1 TCATCTCTTTCAACA
* *
47871731 TCATCTCTTTCCACC
1 TCATCTCTTTCAACA
*
47871746 TCATCTCTTTCAACT
1 TCATCTCTTTCAACA
47871761 TCATC
1 TCATC
47871766 AGCATCTTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.20, C:0.38, G:0.00, T:0.42
Consensus pattern (15 bp):
TCATCTCTTTCAACA
Found at i:47874764 original size:32 final size:32
Alignment explanation
Indices: 47874728--47874803 Score: 86
Period size: 31 Copynumber: 2.4 Consensus size: 32
47874718 GGTAAACCCC
*
47874728 AAAATTA-TAAGTCATGACTATAAAAGAGAAAG
1 AAAATTATTAA-TCATGACTAGAAAAGAGAAAG
* *
47874760 AAAA-TATTCATCATGACTAGAAAGGAGAAAG
1 AAAATTATTAATCATGACTAGAAAAGAGAAAG
*
47874791 AAAA-TATTCATCA
1 AAAATTATTAATCA
47874804 CTTATGATTA
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
31 34 0.85
32 6 0.15
ACGTcount: A:0.54, C:0.09, G:0.14, T:0.22
Consensus pattern (32 bp):
AAAATTATTAATCATGACTAGAAAAGAGAAAG
Found at i:47874777 original size:31 final size:31
Alignment explanation
Indices: 47874739--47874803 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
47874729 AAATTATAAG
*
47874739 TCATGACTATAAAAGAGAAAGAAAATATTCA
1 TCATGACTAGAAAAGAGAAAGAAAATATTCA
*
47874770 TCATGACTAGAAAGGAGAAAGAAAATATTCA
1 TCATGACTAGAAAAGAGAAAGAAAATATTCA
47874801 TCA
1 TCA
47874804 CTTATGATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.52, C:0.11, G:0.15, T:0.22
Consensus pattern (31 bp):
TCATGACTAGAAAAGAGAAAGAAAATATTCA
Found at i:47878180 original size:24 final size:24
Alignment explanation
Indices: 47878150--47878203 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
47878140 ACTACTAAGT
*
47878150 TTGAAACTTGAAATTAGAGAAGAG
1 TTGAAACTTGAAATGAGAGAAGAG
47878174 TTGAAACTTGAAATGAGAGAAGAG
1 TTGAAACTTGAAATGAGAGAAGAG
*
47878198 CTGAAA
1 TTGAAA
47878204 AGAAGCAGAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.46, C:0.06, G:0.26, T:0.22
Consensus pattern (24 bp):
TTGAAACTTGAAATGAGAGAAGAG
Found at i:47885679 original size:5 final size:5
Alignment explanation
Indices: 47885669--47885694 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
47885659 TGAGCATTCG
47885669 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
47885695 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:47886755 original size:9 final size:9
Alignment explanation
Indices: 47886741--47886777 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
47886731 NNNNNNNNNN
47886741 TATTCGAAT
1 TATTCGAAT
47886750 TATTCGAAT
1 TATTCGAAT
*
47886759 TATTCGAGT
1 TATTCGAAT
47886768 TATTCGAAT
1 TATTCGAAT
47886777 T
1 T
47886778 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:47891912 original size:27 final size:27
Alignment explanation
Indices: 47891873--47891935 Score: 67
Period size: 27 Copynumber: 2.3 Consensus size: 27
47891863 TCATGCTTTA
* *
47891873 TATTTTTT-TACATACT-TACACATTTT
1 TATTTTTTAAACATA-TATACACAATTT
*
47891899 TATTTTTTAAACATATATACATAATTT
1 TATTTTTTAAACATATATACACAATTT
47891926 TATATTTTTA
1 TAT-TTTTTA
47891936 TTTTATTGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
26 9 0.29
27 16 0.52
28 6 0.19
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (27 bp):
TATTTTTTAAACATATATACACAATTT
Found at i:47893584 original size:31 final size:31
Alignment explanation
Indices: 47893530--47893591 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
47893520 ACTTATAAAC
*
47893530 AATAAAATATAATAAAATTTATGACATAATT
1 AATAAAATATAATAAAATTTATGACACAATT
* *
47893561 AATAAAATATCA-AAATTTATATGACACAATT
1 AATAAAATATAATAAAATT-TATGACACAATT
47893592 TATCATTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 5 0.19
31 22 0.81
ACGTcount: A:0.56, C:0.06, G:0.03, T:0.34
Consensus pattern (31 bp):
AATAAAATATAATAAAATTTATGACACAATT
Found at i:47898167 original size:60 final size:60
Alignment explanation
Indices: 47898098--47898274 Score: 354
Period size: 60 Copynumber: 3.0 Consensus size: 60
47898088 CTTAGACTTG
47898098 ACTTGTTTGTTGAGAGTTCGCGATGAATAACTTATTCATTGAGAATTCGTGTCAAGGAGA
1 ACTTGTTTGTTGAGAGTTCGCGATGAATAACTTATTCATTGAGAATTCGTGTCAAGGAGA
47898158 ACTTGTTTGTTGAGAGTTCGCGATGAATAACTTATTCATTGAGAATTCGTGTCAAGGAGA
1 ACTTGTTTGTTGAGAGTTCGCGATGAATAACTTATTCATTGAGAATTCGTGTCAAGGAGA
47898218 ACTTGTTTGTTGAGAGTTCGCGATGAATAACTTATTCATTGAGAATTCGTGTCAAGG
1 ACTTGTTTGTTGAGAGTTCGCGATGAATAACTTATTCATTGAGAATTCGTGTCAAGG
47898275 TGGAGATTGT
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 117 1.00
ACGTcount: A:0.28, C:0.12, G:0.25, T:0.36
Consensus pattern (60 bp):
ACTTGTTTGTTGAGAGTTCGCGATGAATAACTTATTCATTGAGAATTCGTGTCAAGGAGA
Found at i:47898171 original size:31 final size:31
Alignment explanation
Indices: 47898136--47898237 Score: 109
Period size: 31 Copynumber: 3.4 Consensus size: 31
47898126 AACTTATTCA
47898136 TTGAGAATTCGTGTCAAGGAGAACTTGTTTG
1 TTGAGAATTCGTGTCAAGGAGAACTTGTTTG
* * * * * * **
47898167 TTGAGAGTTCGCG--ATGAATAACTTATTCA
1 TTGAGAATTCGTGTCAAGGAGAACTTGTTTG
47898196 TTGAGAATTCGTGTCAAGGAGAACTTGTTTG
1 TTGAGAATTCGTGTCAAGGAGAACTTGTTTG
*
47898227 TTGAGAGTTCG
1 TTGAGAATTCG
47898238 CGATGAATAA
Statistics
Matches: 52, Mismatches: 17, Indels: 4
0.71 0.23 0.05
Matches are distributed among these distances:
29 21 0.40
31 31 0.60
ACGTcount: A:0.26, C:0.11, G:0.27, T:0.35
Consensus pattern (31 bp):
TTGAGAATTCGTGTCAAGGAGAACTTGTTTG
Found at i:47898259 original size:29 final size:29
Alignment explanation
Indices: 47898107--47898266 Score: 131
Period size: 29 Copynumber: 5.4 Consensus size: 29
47898097 GACTTGTTTG
*
47898107 TTGAGAGTTCGCGATGAATAACTTATTCA
1 TTGAGAATTCGCGATGAATAACTTATTCA
* * * * * **
47898136 TTGAGAATTCGTGTCAAGGAGAACTTGTTTG
1 TTGAGAATTCGCG--ATGAATAACTTATTCA
*
47898167 TTGAGAGTTCGCGATGAATAACTTATTCA
1 TTGAGAATTCGCGATGAATAACTTATTCA
* * * * * **
47898196 TTGAGAATTCGTGTCAAGGAGAACTTGTTTG
1 TTGAGAATTCGCG--ATGAATAACTTATTCA
*
47898227 TTGAGAGTTCGCGATGAATAACTTATTCA
1 TTGAGAATTCGCGATGAATAACTTATTCA
47898256 TTGAGAATTCG
1 TTGAGAATTCG
47898267 TGTCAAGGTG
Statistics
Matches: 94, Mismatches: 33, Indels: 8
0.70 0.24 0.06
Matches are distributed among these distances:
29 52 0.55
31 42 0.45
ACGTcount: A:0.29, C:0.12, G:0.24, T:0.35
Consensus pattern (29 bp):
TTGAGAATTCGCGATGAATAACTTATTCA
Found at i:47899509 original size:60 final size:58
Alignment explanation
Indices: 47899402--47899532 Score: 133
Period size: 60 Copynumber: 2.2 Consensus size: 58
47899392 AATAAATTTA
* *
47899402 TTTTTTGATCCTTCAACAATGAAAAATTACAAAATGACCATTCAACTATT-AGTATGTT-TC
1 TTTTTTGGTCATTCAACAATGAAAAATTACAAAATGACCA-T-AACTATTCA--ATGTTGTC
* * *
47899462 TTTTTTGGTCATTCAACTATGAAAAGTTACAAAATAGTTACCA-AACTATTCAATTTTGTC
1 TTTTTTGGTCATTCAACAATGAAAAATTACAAAAT-G--ACCATAACTATTCAATGTTGTC
47899522 TTTTTTGGTCA
1 TTTTTTGGTCA
47899533 CCATTTGGCT
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
59 4 0.07
60 51 0.84
61 2 0.03
63 4 0.07
ACGTcount: A:0.34, C:0.15, G:0.10, T:0.41
Consensus pattern (58 bp):
TTTTTTGGTCATTCAACAATGAAAAATTACAAAATGACCATAACTATTCAATGTTGTC
Found at i:47900721 original size:9 final size:9
Alignment explanation
Indices: 47900707--47900752 Score: 74
Period size: 9 Copynumber: 5.1 Consensus size: 9
47900697 TTACTAATTT
47900707 AAAATTTTA
1 AAAATTTTA
47900716 AAAATTTTA
1 AAAATTTTA
*
47900725 AAAAATTTA
1 AAAATTTTA
*
47900734 AAAAATTTA
1 AAAATTTTA
47900743 AAAATTTTA
1 AAAATTTTA
47900752 A
1 A
47900753 TGGGGCTAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 35 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (9 bp):
AAAATTTTA
Found at i:47901610 original size:17 final size:17
Alignment explanation
Indices: 47901590--47901622 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
47901580 CAAATTCAAT
47901590 AAAGAAACAAA-AAAGAA
1 AAAGAAA-AAATAAAGAA
47901607 AAAGAAAAAATAAAGA
1 AAAGAAAAAATAAAGA
47901623 TTAATTATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.82, C:0.03, G:0.12, T:0.03
Consensus pattern (17 bp):
AAAGAAAAAATAAAGAA
Found at i:47907282 original size:15 final size:15
Alignment explanation
Indices: 47907264--47907304 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
47907254 TGATGAAGTT
47907264 GAAAGAGATGAGGTG
1 GAAAGAGATGAGGTG
* *
47907279 GAAAGAGATGATGTT
1 GAAAGAGATGAGGTG
47907294 GAAAGAGATGA
1 GAAAGAGATGA
47907305 AGACTCTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.44, C:0.00, G:0.39, T:0.17
Consensus pattern (15 bp):
GAAAGAGATGAGGTG
Found at i:47910639 original size:18 final size:18
Alignment explanation
Indices: 47910597--47910631 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
47910587 TCGAAGCTAG
*
47910597 TTATGAAGATGACGATGC
1 TTATGAAGATGACAATGC
*
47910615 TTATGAAGATGATAATG
1 TTATGAAGATGACAATG
47910632 GCTTTGAACA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31
Consensus pattern (18 bp):
TTATGAAGATGACAATGC
Found at i:47919107 original size:12 final size:12
Alignment explanation
Indices: 47919092--47919130 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
47919082 ATGTATACGT
47919092 ATATCCATATCC
1 ATATCCATATCC
47919104 ATATCCATATCC
1 ATATCCATATCC
* *
47919116 ATATACATATAC
1 ATATCCATATCC
47919128 ATA
1 ATA
47919131 ACAGCTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.41, C:0.26, G:0.00, T:0.33
Consensus pattern (12 bp):
ATATCCATATCC
Found at i:47919113 original size:18 final size:18
Alignment explanation
Indices: 47919092--47919130 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
47919082 ATGTATACGT
* *
47919092 ATATCCATATCCATATCC
1 ATATCCATATACATATAC
47919110 ATATCCATATACATATAC
1 ATATCCATATACATATAC
47919128 ATA
1 ATA
47919131 ACAGCTCAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.41, C:0.26, G:0.00, T:0.33
Consensus pattern (18 bp):
ATATCCATATACATATAC
Found at i:47920018 original size:10 final size:10
Alignment explanation
Indices: 47920003--47920029 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
47919993 TTTTTCAGAG
47920003 TTTAGAATAT
1 TTTAGAATAT
47920013 TTTAGAATAT
1 TTTAGAATAT
47920023 TTTAGAA
1 TTTAGAA
47920030 AATGTTTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (10 bp):
TTTAGAATAT
Found at i:47920317 original size:2 final size:2
Alignment explanation
Indices: 47920306--47920349 Score: 74
Period size: 2 Copynumber: 23.0 Consensus size: 2
47920296 TATTTAAAAG
47920306 AT AT -T AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
47920346 AT AT
1 AT AT
47920350 GAAAGGTTGC
Statistics
Matches: 40, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 2 0.05
2 38 0.95
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:47922925 original size:2 final size:2
Alignment explanation
Indices: 47922918--47922942 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
47922908 TAAAAATAGT
47922918 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
47922943 GTATTAATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:47935609 original size:31 final size:31
Alignment explanation
Indices: 47935574--47935637 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
47935564 TACAGAATGA
*
47935574 TCACTGAACTATTCA-ATAGTTTTCATTTAAG
1 TCACTGAACTATTCAGA-ACTTTTCATTTAAG
*
47935605 TCACTGAACTATTCAGAACTTTTTATTTAAG
1 TCACTGAACTATTCAGAACTTTTCATTTAAG
47935636 TC
1 TC
47935638 TTTGGGTTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.31, C:0.17, G:0.09, T:0.42
Consensus pattern (31 bp):
TCACTGAACTATTCAGAACTTTTCATTTAAG
Found at i:47952448 original size:43 final size:43
Alignment explanation
Indices: 47952395--47952493 Score: 173
Period size: 43 Copynumber: 2.3 Consensus size: 43
47952385 CGAAACAAAA
47952395 GAACAAAGAAAA-GAGGAAGTTGGGTCTTGAAAGCTAACAAGAG
1 GAACAAAGAAAAGGA-GAAGTTGGGTCTTGAAAGCTAACAAGAG
*
47952438 GAACAGAGAAAAGGAGAAGTTGGGTCTTGAAAGCTAACAAGAG
1 GAACAAAGAAAAGGAGAAGTTGGGTCTTGAAAGCTAACAAGAG
47952481 GAACAAAGAAAAG
1 GAACAAAGAAAAG
47952494 TTTTGGGGGG
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
43 51 0.96
44 2 0.04
ACGTcount: A:0.48, C:0.09, G:0.30, T:0.12
Consensus pattern (43 bp):
GAACAAAGAAAAGGAGAAGTTGGGTCTTGAAAGCTAACAAGAG
Done.