Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 22 of 145
Found at i:7057621 original size:9 final size:10
Alignment explanation
Indices: 7057605--7057629 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7057595 TCATTTCTGT
7057605 TAAAAAAACC
1 TAAAAAAACC
7057615 TAAAAAAACC
1 TAAAAAAACC
7057625 TAAAA
1 TAAAA
7057630 CTCTCCTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.16, G:0.00, T:0.12
Consensus pattern (10 bp):
TAAAAAAACC
Found at i:7060030 original size:2 final size:2
Alignment explanation
Indices: 7060023--7060066 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
7060013 GATCCAGGCC
7060023 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7060065 TA
1 TA
7060067 AAAATCATTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7090766 original size:19 final size:20
Alignment explanation
Indices: 7090685--7090787 Score: 77
Period size: 19 Copynumber: 5.0 Consensus size: 20
7090675 TTATTTAAAA
*
7090685 GTTAAAAAATAATATTT-TAT
1 GTTAAAAAATAA-ATTTATTT
*
7090705 -TTAAAAAAGTGAAATTTGAATTA
1 GTTAAAAAA-T-AAATTT--ATTT
* **
7090728 ATTAAAAAATAAAAAATATTT
1 GTTAAAAAAT-AAATTTATTT
*
7090749 GTTAAAAAA-AGATTTATTT
1 GTTAAAAAATAAATTTATTT
7090768 GTTAAAAAATAAATTTATTT
1 GTTAAAAAATAAATTTATTT
7090788 AAAAATATAT
Statistics
Matches: 65, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
19 24 0.37
20 14 0.22
21 13 0.20
23 6 0.09
24 8 0.12
ACGTcount: A:0.53, C:0.00, G:0.07, T:0.40
Consensus pattern (20 bp):
GTTAAAAAATAAATTTATTT
Found at i:7090775 original size:20 final size:19
Alignment explanation
Indices: 7090744--7090787 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
7090734 AAATAAAAAA
7090744 TATTTGTTAAAAA-AAGATT
1 TATTTGTTAAAAATAA-ATT
7090763 TATTTGTTAAAAAATAAATT
1 TATTTGTT-AAAAATAAATT
7090783 TATTT
1 TATTT
7090788 AAAAATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 8 0.35
20 13 0.57
21 2 0.09
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (19 bp):
TATTTGTTAAAAATAAATT
Found at i:7090783 original size:16 final size:16
Alignment explanation
Indices: 7090764--7090812 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
7090754 AAAAAGATTT
*
7090764 ATTTGTTAAAAAATAA
1 ATTTATTAAAAAATAA
* *
7090780 ATTTATTTAAAAATAT
1 ATTTATTAAAAAATAA
* *
7090796 ATATATTAAAAAGTAA
1 ATTTATTAAAAAATAA
7090812 A
1 A
7090813 AATTAAAATT
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (16 bp):
ATTTATTAAAAAATAA
Found at i:7090843 original size:20 final size:19
Alignment explanation
Indices: 7090789--7090843 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 19
7090779 AATTTATTTA
7090789 AAAATATATATATTAAAAAGT
1 AAAA-ATATATATT-AAAAGT
*
7090810 AAAAAT-TAAAATTAAAAGTT
1 AAAAATAT-ATATTAAAAG-T
7090830 AAAAATATATATTA
1 AAAAATATATATTA
7090844 TAAGATCACA
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
19 6 0.21
20 18 0.62
21 5 0.17
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.33
Consensus pattern (19 bp):
AAAAATATATATTAAAAGT
Found at i:7094765 original size:30 final size:30
Alignment explanation
Indices: 7094729--7094835 Score: 117
Period size: 30 Copynumber: 3.6 Consensus size: 30
7094719 GTCGCAGAGT
* * *
7094729 AGTTCATATCACTCGGACAT-TGCCAGTTCA
1 AGTTCATATCACCCAGACATAAG-CAGTTCA
*
7094759 AGTTCATATCACCCAGACATAAGCGGTTCA
1 AGTTCATATCACCCAGACATAAGCAGTTCA
* * * *
7094789 AGTTCATATCACCCAAACATAGGCGGTTCG
1 AGTTCATATCACCCAGACATAAGCAGTTCA
*
7094819 AGTTCATTTCACCCAGA
1 AGTTCATATCACCCAGA
7094836 GCAACCACCG
Statistics
Matches: 67, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
30 66 0.99
31 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (30 bp):
AGTTCATATCACCCAGACATAAGCAGTTCA
Found at i:7098070 original size:13 final size:14
Alignment explanation
Indices: 7098056--7098094 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 14
7098046 TTTAAAAATA
7098056 ATTTAAAAAATTAAT
1 ATTTAAAAAATT-AT
7098071 CATTTGAAAAAATTAT
1 -ATTT-AAAAAATTAT
7098087 ATTTAAAA
1 ATTTAAAA
7098095 TTAAAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 4 0.18
15 4 0.18
16 6 0.27
17 8 0.36
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (14 bp):
ATTTAAAAAATTAT
Found at i:7098118 original size:21 final size:19
Alignment explanation
Indices: 7098078--7098114 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
7098068 AATCATTTGA
*
7098078 AAAAATTATATTTAAAATT
1 AAAAATAATATTTAAAATT
7098097 AAAAATAATATTTAAAAT
1 AAAAATAATATTTAAAAT
7098115 ATTATAAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAATAATATTTAAAATT
Found at i:7098977 original size:18 final size:16
Alignment explanation
Indices: 7098951--7098997 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 16
7098941 TTAATAACAA
7098951 AAAATAAATAAAATAAAG
1 AAAA-AAATAAAAT-AAG
7098969 AAACAAAATAAAATAAG
1 AAA-AAAATAAAATAAG
*
7098986 AAAAATATAAAA
1 AAAAAAATAAAA
7098998 CTTAAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
16 8 0.30
17 6 0.22
18 12 0.44
19 1 0.04
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.15
Consensus pattern (16 bp):
AAAAAAATAAAATAAG
Found at i:7100458 original size:78 final size:79
Alignment explanation
Indices: 7100354--7100500 Score: 278
Period size: 78 Copynumber: 1.9 Consensus size: 79
7100344 TAATAGTGTC
*
7100354 AATCGATTTGTTACTAAAATATTAAAATTATTTAATTTAATCTCCTTCTAAAATTTAAAATTTTG
1 AATCGATTTGTTACTAAAATATTAAAATTATTTAATTTAATCTCCTTCTAAAATTTAAAATTTTA
7100419 TTTTTATATTTCCA
66 TTTTTATATTTCCA
7100433 AATCGATTTGTTA-TAAAATATTAAAATTATTTAATTTAATCTCCTTCTAAAATTTAAAATTTTA
1 AATCGATTTGTTACTAAAATATTAAAATTATTTAATTTAATCTCCTTCTAAAATTTAAAATTTTA
7100497 TTTT
66 TTTT
7100501 ATGTTTCAAA
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
78 54 0.81
79 13 0.19
ACGTcount: A:0.38, C:0.09, G:0.03, T:0.50
Consensus pattern (79 bp):
AATCGATTTGTTACTAAAATATTAAAATTATTTAATTTAATCTCCTTCTAAAATTTAAAATTTTA
TTTTTATATTTCCA
Found at i:7103522 original size:41 final size:39
Alignment explanation
Indices: 7103447--7103713 Score: 149
Period size: 41 Copynumber: 6.8 Consensus size: 39
7103437 TCTGAGTTTT
* *
7103447 TGGGGCTTTAGCGGC-TTTTTTAGAAAGCGTCGCTAATGC
1 TGGGGCTTTAGCGGCGTTTTTGA-AAAGCGCCGCTAATGC
* *
7103486 ATGGGGATTTAGCGGCGTTTTTGAAAATGCGGCGCTAATGC
1 -TGGGGCTTTAGCGGCGTTTTTGAAAA-GCGCCGCTAATGC
** *
7103527 TCTCGGCTTTAGCAGCGTTTTTAGAAAAGCGCCGCTAATGC
1 T-GGGGCTTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGC
***** * * *
7103568 TCTATTTTTAGTGACG--TTT-----GTGCCGCTAATGTTC
1 TGGGGCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATG--C
* * *
7103602 T-CGGCTTTAGCGGCATTTTTGGAAAAGCGCCGCTAATTC
1 TGGGGCTTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGC
*
7103641 TTGGGTCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC
1 -TGGGGCTTTAGCGGCGTTTTTGAA-AAGCGCCGCTAATGC
**** * *
7103682 T-CTATTTTAGTGACGTTTTTGAAAAGCGCCGC
1 TGGGGCTTTAGCGGCGTTTTTGAAAAGCGCCGC
7103714 ATAAAATATT
Statistics
Matches: 174, Mismatches: 36, Indels: 36
0.71 0.15 0.15
Matches are distributed among these distances:
32 11 0.06
33 7 0.04
34 2 0.01
35 3 0.02
38 12 0.07
39 17 0.10
40 30 0.17
41 87 0.50
42 5 0.03
ACGTcount: A:0.19, C:0.19, G:0.27, T:0.34
Consensus pattern (39 bp):
TGGGGCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGC
Found at i:7103612 original size:114 final size:113
Alignment explanation
Indices: 7103493--7103699 Score: 312
Period size: 114 Copynumber: 1.8 Consensus size: 113
7103483 TGCATGGGGA
* *
7103493 TTTAGCGGCGTTTTT-GAAAATGCGGCGCTAATGCTCTCGG-CTTTAGCAGCGTTTTTAGAA-AA
1 TTTAGCGGCATTTTTGGAAAA-GCGCCGCTAATGCT-TCGGTCTTTAGCAGCGTTTTT-GAAGAA
7103555 GCGCCGCTAATGCTCTATTTTTAGTGACGTTTGTGCCGCTAATGTTCTCGGC
63 GCGCCGCTAATGCTCTA-TTTTAGTGACGTTTGTGCCGCTAATGTTCTCGGC
* * *
7103607 TTTAGCGGCATTTTTGGAAAAGCGCCGCTAATTCTTGGGTCTTTAGCGGCGTTTTTGAAGAAGCG
1 TTTAGCGGCATTTTTGGAAAAGCGCCGCTAATGCTTCGGTCTTTAGCAGCGTTTTTGAAGAAGCG
7103672 CCGCTAATGCTCTATTTTAGTGACGTTT
66 CCGCTAATGCTCTATTTTAGTGACGTTT
7103700 TTGAAAAGCG
Statistics
Matches: 85, Mismatches: 5, Indels: 7
0.88 0.05 0.07
Matches are distributed among these distances:
113 20 0.24
114 60 0.71
115 5 0.06
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.36
Consensus pattern (113 bp):
TTTAGCGGCATTTTTGGAAAAGCGCCGCTAATGCTTCGGTCTTTAGCAGCGTTTTTGAAGAAGCG
CCGCTAATGCTCTATTTTAGTGACGTTTGTGCCGCTAATGTTCTCGGC
Found at i:7120855 original size:24 final size:24
Alignment explanation
Indices: 7120827--7120878 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
7120817 TTAAAATAAG
*
7120827 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAGTATAATAT
*
7120851 ATTTAGCATTTATTAGTATAATTT
1 ATTTAGCATTTATTAGTATAATAT
7120875 ATTT
1 ATTT
7120879 GACCTACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.35, C:0.02, G:0.08, T:0.56
Consensus pattern (24 bp):
ATTTAGCATTTATTAGTATAATAT
Found at i:7123530 original size:138 final size:135
Alignment explanation
Indices: 7123244--7123561 Score: 379
Period size: 138 Copynumber: 2.3 Consensus size: 135
7123234 AACCTACCAT
* * * * * *
7123244 TGGGTGTGGGTACGCAACAAAATATCGCAGATAAAATCTGTCATTGGGTTATAGATGCACACCAT
1 TGGGTGTGGGTGCACAA-AAAATATTGCAGATAAAA-CTGTCACTAGGCTATAGATGCACACCAT
* * *
7123309 ATTCGCAAGTAAAAGCTGTCGATGGGTTGTGGATATACAACATATTTCCAGTTAAAGGTTAAACA
64 ATTCGCAAGTAAAAGCTATCGATGGGTTGTGGATATACAACATATTTCCAATTAAAGGATAAACA
*
7123374 CTGCCAT
129 CTGCCAC
* * *
7123381 TGGATTCTGGGTGCACAATAAAATATTGCAAATAAAAGCTGTCACTAGGCTATAGATGCACACCA
1 TGG-GTGTGGGTGCACAA-AAAATATTGCAGATAAAA-CTGTCACTAGGCTATAGATGCACACCA
* * * * * *
7123446 TATTTGCAGGTAAAAGCTATCGATGGGTTGTGGATGTACATCATATTTGCAATTAAAGGATAAAT
63 TATTCGCAAGTAAAAGCTATCGATGGGTTGTGGATATACAACATATTTCCAATTAAAGGATAAAC
7123511 ACTGCCAC
128 ACTGCCAC
*
7123519 TGGGCTGTGGGTGCATAAACAAAT-TTGCAGAT-AAACTGTCACT
1 TGGG-TGTGGGTGCACAAA-AAATATTGCAGATAAAACTGTCACT
7123562 TCTTCCTTCA
Statistics
Matches: 153, Mismatches: 25, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
135 8 0.05
136 3 0.02
137 11 0.07
138 131 0.86
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.28
Consensus pattern (135 bp):
TGGGTGTGGGTGCACAAAAAATATTGCAGATAAAACTGTCACTAGGCTATAGATGCACACCATAT
TCGCAAGTAAAAGCTATCGATGGGTTGTGGATATACAACATATTTCCAATTAAAGGATAAACACT
GCCAC
Found at i:7124363 original size:16 final size:16
Alignment explanation
Indices: 7124338--7124368 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7124328 TATTAAATTT
*
7124338 AATTACTATAATATTA
1 AATTAATATAATATTA
7124354 AATTAATATAATATT
1 AATTAATATAATATT
7124369 TACCAAGGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
AATTAATATAATATTA
Found at i:7142543 original size:35 final size:34
Alignment explanation
Indices: 7142498--7142613 Score: 117
Period size: 34 Copynumber: 3.4 Consensus size: 34
7142488 ATCACTTAGT
* *
7142498 TATGCTTTTAACAGGACAATACAATAGCATTTAA
1 TATGCTTATAACAGGACAATACAATAGCAATTAA
* ** *
7142532 TTATGCTTTTAAC-GAGACAATATGATAGCAATCAA
1 -TATGCTTATAACAG-GACAATACAATAGCAATTAA
* ** *
7142567 TATGCTTATAAAAGTTCAATACAATAGCAAATAA
1 TATGCTTATAACAGGACAATACAATAGCAATTAA
7142601 TATGCTTATAACA
1 TATGCTTATAACA
7142614 TATCAACTCA
Statistics
Matches: 66, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
34 37 0.56
35 29 0.44
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (34 bp):
TATGCTTATAACAGGACAATACAATAGCAATTAA
Found at i:7142711 original size:5 final size:5
Alignment explanation
Indices: 7142701--7142743 Score: 86
Period size: 5 Copynumber: 8.6 Consensus size: 5
7142691 ACAAACACAG
7142701 ATACA ATACA ATACA ATACA ATACA ATACA ATACA ATACA ATA
1 ATACA ATACA ATACA ATACA ATACA ATACA ATACA ATACA ATA
7142744 GATATATGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.60, C:0.19, G:0.00, T:0.21
Consensus pattern (5 bp):
ATACA
Found at i:7143435 original size:36 final size:37
Alignment explanation
Indices: 7143384--7143453 Score: 99
Period size: 36 Copynumber: 1.9 Consensus size: 37
7143374 GATAATCACT
*
7143384 TTAATATTAAATTAATA-AAATACTATTAAGATAAGTA
1 TTAATATTAAATTAATATAAA-ACTATTAAAATAAGTA
*
7143421 TTAA-ATTAAATTAATATTAAACTATTAAAATAA
1 TTAATATTAAATTAATATAAAACTATTAAAATAA
7143454 TATGTTTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
36 24 0.80
37 6 0.20
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (37 bp):
TTAATATTAAATTAATATAAAACTATTAAAATAAGTA
Found at i:7147623 original size:28 final size:28
Alignment explanation
Indices: 7147580--7147758 Score: 191
Period size: 28 Copynumber: 6.4 Consensus size: 28
7147570 TAAAATTTGT
*
7147580 AAAATAGGAGACAAAATTGTAAAATCTAA
1 AAAATAGG-GGCAAAATTGTAAAATCTAA
* * *
7147609 AAAGTAGGGGCAAAACTATAAAATCTAA
1 AAAATAGGGGCAAAATTGTAAAATCTAA
*
7147637 AAAATAAGGG-AAAATTGTAAAATCTAA
1 AAAATAGGGGCAAAATTGTAAAATCTAA
*
7147664 AAAATAGGGGTAAAATTGTATAAA-CTAGA
1 AAAATAGGGGCAAAATTGTA-AAATCTA-A
* **
7147693 AAAATAGGGGCAAAATTGTAAAATTTTT
1 AAAATAGGGGCAAAATTGTAAAATCTAA
* * * * *
7147721 GAAATAGTGGCAAAACTATAATATCTAA
1 AAAATAGGGGCAAAATTGTAAAATCTAA
7147749 AAAATAGGGG
1 AAAATAGGGG
7147759 ACACACGACC
Statistics
Matches: 123, Mismatches: 23, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
27 24 0.20
28 68 0.55
29 31 0.25
ACGTcount: A:0.53, C:0.06, G:0.18, T:0.23
Consensus pattern (28 bp):
AAAATAGGGGCAAAATTGTAAAATCTAA
Found at i:7147653 original size:55 final size:54
Alignment explanation
Indices: 7147592--7147759 Score: 194
Period size: 55 Copynumber: 3.0 Consensus size: 54
7147582 AATAGGAGAC
*
7147592 AAAATTGTAAAATCTAAAAAGTAGGGGCAAAACTATAAAATCTAAAAAATAAGGG
1 AAAATTGTAAAATCTAAAAA-TAGGGGCAAAACTATAAAATCTAAAAAATAGGGG
* * *
7147647 AAAATTGTAAAATCTAAAAAATAGGGGTAAAATTGTATAAA-CTAGAAAAATAGGGG
1 AAAATTGTAAAATCT-AAAAATAGGGGCAAAACTATA-AAATCTA-AAAAATAGGGG
* ** * *
7147703 CAAAATTGTAAAATTTTTGAAATAGTGGCAAAACTATAATATCTAAAAAATAGGGG
1 -AAAATTGTAAAA-TCTAAAAATAGGGGCAAAACTATAAAATCTAAAAAATAGGGG
7147759 A
1 A
7147760 CACACGACCA
Statistics
Matches: 95, Mismatches: 12, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
55 32 0.34
56 31 0.33
57 30 0.32
58 2 0.02
ACGTcount: A:0.53, C:0.06, G:0.17, T:0.24
Consensus pattern (54 bp):
AAAATTGTAAAATCTAAAAATAGGGGCAAAACTATAAAATCTAAAAAATAGGGG
Found at i:7150676 original size:21 final size:21
Alignment explanation
Indices: 7150651--7150694 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
7150641 AAAACATACA
7150651 TAATTAAATTACTTTTGTTAT
1 TAATTAAATTACTTTTGTTAT
7150672 TAATTAAATTACTTTTGTTAT
1 TAATTAAATTACTTTTGTTAT
7150693 TA
1 TA
7150695 TCATATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.05, G:0.05, T:0.57
Consensus pattern (21 bp):
TAATTAAATTACTTTTGTTAT
Found at i:7163277 original size:24 final size:24
Alignment explanation
Indices: 7163245--7163296 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7163235 CTACACCAGC
* * *
7163245 GGCCGTGTGGTTGGCCATGTGCGA
1 GGCCATGTGGCTGGCCATGTACGA
7163269 GGCCATGTGGCTGGCCATGTACGA
1 GGCCATGTGGCTGGCCATGTACGA
7163293 GGCC
1 GGCC
7163297 GTGTAGAGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.12, C:0.25, G:0.42, T:0.21
Consensus pattern (24 bp):
GGCCATGTGGCTGGCCATGTACGA
Found at i:7165923 original size:22 final size:23
Alignment explanation
Indices: 7165881--7165923 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 23
7165871 TAAATACAAT
*
7165881 ATTTAATAAATTTGAAAAGGTAG
1 ATTTAATAAATTTAAAAAGGTAG
7165904 ATTT-ATAAA-TTAAAATAGGT
1 ATTTAATAAATTTAAAA-AGGT
7165924 GCATTAAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
21 5 0.28
22 9 0.50
23 4 0.22
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.37
Consensus pattern (23 bp):
ATTTAATAAATTTAAAAAGGTAG
Found at i:7167444 original size:17 final size:18
Alignment explanation
Indices: 7167407--7167447 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
7167397 ATCATACTAT
7167407 TTTTAAATAATTCTAAAA
1 TTTTAAATAATTCTAAAA
*
7167425 TTTTAAATAATT-TTAAA
1 TTTTAAATAATTCTAAAA
7167442 TTTTAA
1 TTTTAA
7167448 TTAAAAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTTAAATAATTCTAAAA
Found at i:7169261 original size:39 final size:38
Alignment explanation
Indices: 7169178--7169263 Score: 95
Period size: 39 Copynumber: 2.2 Consensus size: 38
7169168 ACATATCTAT
7169178 ATTCATATAAATATTTTGCATAAACACTTCACATAACC
1 ATTCATATAAATATTTTGCATAAACACTTCACATAACC
* * *
7169216 ATTTCATATATATATTTT-CATATAA-ACATTCAGTATATCC
1 A-TTCATATAAATATTTTGCATA-AACAC-TTCA-CATAACC
7169256 ATTCATAT
1 ATTCATAT
7169264 TACCATTTCC
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
38 7 0.17
39 28 0.68
40 6 0.15
ACGTcount: A:0.40, C:0.17, G:0.02, T:0.41
Consensus pattern (38 bp):
ATTCATATAAATATTTTGCATAAACACTTCACATAACC
Found at i:7169368 original size:25 final size:25
Alignment explanation
Indices: 7169331--7169400 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
7169321 ACGTAGGAAC
*
7169331 AATGCTCACACAAGTTGTGACGGTA
1 AATGCTCACACAAGTTGTGACGATA
* * *
7169356 AATGCTCAGACAAGCTGTGACTATA
1 AATGCTCACACAAGTTGTGACGATA
*
7169381 AATGCTCACACGAGTTGTGA
1 AATGCTCACACAAGTTGTGA
7169401 AATGGGCCTG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (25 bp):
AATGCTCACACAAGTTGTGACGATA
Found at i:7178679 original size:43 final size:43
Alignment explanation
Indices: 7178632--7178884 Score: 192
Period size: 43 Copynumber: 5.9 Consensus size: 43
7178622 TAAAGGTGTT
* * *
7178632 GGTCTATAGTGGCGCTTCTCGCACAAACGCCGCTAAAGATCAG
1 GGTCTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAGATCAG
* * * * *
7178675 GGTCTTTAGCGACG-TT-TTCGATAAAGCGCCGCTAAAGATTAG
1 GGTCTTTAGCGGCGCTTCTCCCACAAA-CGCCGCTAAAGATCAG
* * * **
7178717 GGTCTTTAGCGGCGCTTTTCCCACAAACGCCGCAAAAGACCCT
1 GGTCTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAGATCAG
* * * * **
7178760 GATCTATAGCGGCGCTTC-CACCACAAACGCCACTAAAGAACCT
1 GGTCTTTAGCGGCGCTTCTC-CCACAAACGCCGCTAAAGATCAG
* * * **
7178803 GATCTTTAGCGGCTCTT-TCTCCACAAACGCCGCTAAAGACCTT
1 GGTCTTTAGCGGCGCTTCTC-CCACAAACGCCGCTAAAGATCAG
** *
7178846 TATCTTTAGCGGCGCTT-TCTCCACAAACGCCGTTAAAGA
1 GGTCTTTAGCGGCGCTTCTC-CCACAAACGCCGCTAAAGA
7178885 CCCTTAGCTT
Statistics
Matches: 173, Mismatches: 32, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
41 5 0.03
42 31 0.18
43 131 0.76
44 6 0.03
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.24
Consensus pattern (43 bp):
GGTCTTTAGCGGCGCTTCTCCCACAAACGCCGCTAAAGATCAG
Found at i:7178885 original size:43 final size:43
Alignment explanation
Indices: 7178719--7178950 Score: 295
Period size: 43 Copynumber: 5.4 Consensus size: 43
7178709 AAGATTAGGG
* *
7178719 TCTTTAGCGGCGCTTT-TCCCACAAACGCCGCAAAAGACCCTGA
1 TCTTTAGCGGCGCTTTCT-CCACAAACGCCGCTAAAGACCCTTA
* * * * * *
7178762 TCTATAGCGGCGCTTCCACCACAAACGCCACTAAAGAACCTGA
1 TCTTTAGCGGCGCTTTCTCCACAAACGCCGCTAAAGACCCTTA
* *
7178805 TCTTTAGCGGCTCTTTCTCCACAAACGCCGCTAAAGACCTTTA
1 TCTTTAGCGGCGCTTTCTCCACAAACGCCGCTAAAGACCCTTA
*
7178848 TCTTTAGCGGCGCTTTCTCCACAAACGCCGTTAAAGACCCTTA
1 TCTTTAGCGGCGCTTTCTCCACAAACGCCGCTAAAGACCCTTA
* * * *
7178891 GCTTTAGCGGTGCTTTCTCCACAAACACCGCTAAATACCCTTA
1 TCTTTAGCGGCGCTTTCTCCACAAACGCCGCTAAAGACCCTTA
*
7178934 TCTTTTAGCGGCACTTT
1 TC-TTTAGCGGCGCTTT
7178951 TTGTCGAAAA
Statistics
Matches: 162, Mismatches: 25, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
43 150 0.93
44 12 0.07
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.26
Consensus pattern (43 bp):
TCTTTAGCGGCGCTTTCTCCACAAACGCCGCTAAAGACCCTTA
Found at i:7179895 original size:13 final size:13
Alignment explanation
Indices: 7179877--7179906 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
7179867 TTCACTTCAT
7179877 TATTAATACCAAA
1 TATTAATACCAAA
*
7179890 TATTAATATCAAA
1 TATTAATACCAAA
7179903 TATT
1 TATT
7179907 TAACAACTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (13 bp):
TATTAATACCAAA
Found at i:7180237 original size:12 final size:12
Alignment explanation
Indices: 7180220--7180251 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
7180210 AAAATCTCGC
*
7180220 AAAACAGACTAG
1 AAAACAAACTAG
7180232 AAAACAAACTAG
1 AAAACAAACTAG
7180244 AAAACAAA
1 AAAACAAA
7180252 ATCCAAGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.69, C:0.16, G:0.09, T:0.06
Consensus pattern (12 bp):
AAAACAAACTAG
Found at i:7182086 original size:451 final size:449
Alignment explanation
Indices: 7181224--7182452 Score: 2044
Period size: 451 Copynumber: 2.7 Consensus size: 449
7181214 ATTGCTTCCA
* * * *
7181224 TAATTACCAAAATTAAATTCTTAAACAGCAACGTTTTAAGAACCTTAAATATATATTTGCGGCGT
1 TAATTGCCAAAATTAAATTCTGAAACAGCACCGTTTTAAGAACCTTCAATATATATTTGCGGCG-
* **
7181289 TTTTAGCAAAAACGCCACTAAAAATTAACTTATTGAATTCAAACGGTGCCGTTTTAAGAAACTTT
65 TTTTAGCAAAAACGCCACTAAAAATTAACTTACTGAATAGAAACGGTG-CGTTTTAAGAAACTTT
* *
7181354 AATCCATAGTTCCAGCGTTTTCCCGAAAAACACCACTAAAATTTCAAGTCCTGAAGAGAAACGGT
129 AATCCATAGTTCCGGCGTTTTCCCGAAAAACGCCACTAAAATTTCAAGTCCTGAAGAGAAACGGT
7181419 GACGTTTTGAAAAACATTAATACATCATTGCGGCGTTTTTAGCATAAACGCCACTAATAGATTAC
194 GACGTTTTGAAAAACATTAATACATCATTGCGGCGTTTTTAGCATAAACGCCACTAATAGATTAC
* * *
7181484 ACTCATCTTCTGAAACGGTGCCGTTTTGCGAAATTATAATACATATTTATGGCGTTTTTCCAAAA
259 ACTCCTCTTCTGAAACGGTGCCGTTTTGAGAAATTATAATACATATTTATGGCGTTTTCCCAAAA
* *
7181549 AATGCCACAAATTAAATTAAATTTCTAAATGGATACGACGCTGTTTTGAAAAAAATGGGAACATA
324 AACGCCACAAATTAAATTAAATTTCTAAATGGATACGACGCCGTTTTGAAAAAAATGGGAACATA
* * * *
7181614 GTTGCGGCGTTTTTTCCCAAACGCCGCTAATGTTTTTTTTTCCTTATAATGTGGTCCTACG
389 GTTGCAGCGTTTCTACCCAAACGCAGCTAATGTTTTTTTTTCCTTATAATGTGGTCCTACG
7181675 TAATTGCCAAAATTAAATTCTGAAACAGCACCGTTTTAAGAACCTTCAATATATATTTGCGGCGT
1 TAATTGCCAAAATTAAATTCTGAAACAGCACCGTTTTAAGAACCTTCAATATATATTTGCGGCGT
* *
7181740 TTTACGCAAAAACGCCACTAAGAATTAACTTACTGAATAGAAATGGTGTCGTTTTAAGAAACTTT
66 TTTA-GCAAAAACGCCACTAAAAATTAACTTACTGAATAGAAACGGTG-CGTTTTAAGAAACTTT
* **
7181805 AATCCATAGTTCCGGCATTTTCCCGAAAAACGCCACTAAAATTTCAAGTCCTGAAGAGAATTGGT
129 AATCCATAGTTCCGGCGTTTTCCCGAAAAACGCCACTAAAATTTCAAGTCCTGAAGAGAAACGGT
* *
7181870 GACGTTTTGAAAAACATTAATACATCATTGCGGCGTTTTTAGCATAAACACCATTAATAGATTAC
194 GACGTTTTGAAAAACATTAATACATCATTGCGGCGTTTTTAGCATAAACGCCACTAATAGATTAC
7181935 ACTCCTCTTCTGAAACGGTGCCGTTTTGAGAAATTATAATACATATTTATGGCGTTTTCCCAAAA
259 ACTCCTCTTCTGAAACGGTGCCGTTTTGAGAAATTATAATACATATTTATGGCGTTTTCCCAAAA
*
7182000 AACGCCACAAATTAAATTAAATTTCTAAATGGATACGACGCCGTTTTGAAAAAAATGGGTACATA
324 AACGCCACAAATTAAATTAAATTTCTAAATGGATACGACGCCGTTTTGAAAAAAATGGGAACATA
* *
7182065 GTTGCAGCGTTTCTACCCAAACGCAGTTAATGTTTTTTTTTCCTTATAATGTGGTCCTGCG
389 GTTGCAGCGTTTCTACCCAAACGCAGCTAATGTTTTTTTTTCCTTATAATGTGGTCCTACG
* *
7182126 TAATTGCCAAAATTAAATTCTGAAACAGCACCGTTTTAAGAACCTTCAATATATAGTTGCGGCAT
1 TAATTGCCAAAATTAAATTCTGAAACAGCACCGTTTTAAGAACCTTCAATATATATTTGCGGC-G
*
7182191 TTTTAGCAAAAACGCCACTAAAAATTAACTTACTGAAAAGAAACGGTGCTGTTTTAAGAAACTTT
65 TTTTAGCAAAAACGCCACTAAAAATTAACTTACTGAATAGAAACGGTGC-GTTTTAAGAAACTTT
* * * *
7182256 AATCCATATTTCCGGCGTTTTCCTGAAAAACGCCACTAAAATGTCAAGTCCTGAAGTGAAACGGT
129 AATCCATAGTTCCGGCGTTTTCCCGAAAAACGCCACTAAAATTTCAAGTCCTGAAGAGAAACGGT
* * *
7182321 GACGTTTTGAAAAACATTAATACATCCTTGCGACGTTTCTAGCATAAACGCCACTAATAGATTAC
194 GACGTTTTGAAAAACATTAATACATCATTGCGGCGTTTTTAGCATAAACGCCACTAATAGATTAC
* *
7182386 ACTCCTCTTCTGAAACGGGGCCGTTTTGATAAATTATAATACATATTTATGGCGTTTTCCCAAAA
259 ACTCCTCTTCTGAAACGGTGCCGTTTTGAGAAATTATAATACATATTTATGGCGTTTTCCCAAAA
7182451 AA
324 AA
7182453 TATTTATTAA
Statistics
Matches: 727, Mismatches: 48, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
450 6 0.01
451 716 0.98
452 5 0.01
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (449 bp):
TAATTGCCAAAATTAAATTCTGAAACAGCACCGTTTTAAGAACCTTCAATATATATTTGCGGCGT
TTTAGCAAAAACGCCACTAAAAATTAACTTACTGAATAGAAACGGTGCGTTTTAAGAAACTTTAA
TCCATAGTTCCGGCGTTTTCCCGAAAAACGCCACTAAAATTTCAAGTCCTGAAGAGAAACGGTGA
CGTTTTGAAAAACATTAATACATCATTGCGGCGTTTTTAGCATAAACGCCACTAATAGATTACAC
TCCTCTTCTGAAACGGTGCCGTTTTGAGAAATTATAATACATATTTATGGCGTTTTCCCAAAAAA
CGCCACAAATTAAATTAAATTTCTAAATGGATACGACGCCGTTTTGAAAAAAATGGGAACATAGT
TGCAGCGTTTCTACCCAAACGCAGCTAATGTTTTTTTTTCCTTATAATGTGGTCCTACG
Found at i:7182745 original size:21 final size:21
Alignment explanation
Indices: 7182721--7182801 Score: 58
Period size: 21 Copynumber: 3.8 Consensus size: 21
7182711 TCTAACCCCT
7182721 AACCCCTAAACCTTAAATCCC
1 AACCCCTAAACCTTAAATCCC
* *
7182742 AACCCTTAAACCAT-AATCCC
1 AACCCCTAAACCTTAAATCCC
** * *
7182762 TAGTCCCTAATCCCTAAAT-CC
1 -AACCCCTAAACCTTAAATCCC
*
7182783 ATACTCCATAAACCTTAAA
1 A-AC-CCCTAAACCTTAAA
7182802 ATAGTAACTC
Statistics
Matches: 44, Mismatches: 12, Indels: 7
0.70 0.19 0.11
Matches are distributed among these distances:
20 7 0.16
21 23 0.52
22 14 0.32
ACGTcount: A:0.38, C:0.37, G:0.01, T:0.23
Consensus pattern (21 bp):
AACCCCTAAACCTTAAATCCC
Found at i:7183445 original size:42 final size:39
Alignment explanation
Indices: 7183381--7183573 Score: 171
Period size: 41 Copynumber: 4.8 Consensus size: 39
7183371 TAAAATGTCC
*
7183381 TTAGTGGCGCTTTTCTAGAAAACGCCGCTAAAGACCCCAGCA
1 TTAGCGGCGCTTTTC-A-AAAACGCCGCTAAAG-CCCCAGCA
*
7183423 TTAGCGGCGCTTTTCCAGAAAACGCCGCTAAAG-----GCT
1 TTAGCGGCGCTTTT-CA-AAAACGCCGCTAAAGCCCCAGCA
* * *
7183459 TTAGCGGCGCTTTTACAAAAACGCCGTTAAAGCCCATAGAA
1 TTAGCGGCGCTTTT-CAAAAACGCCGCTAAAGCCC-CAGCA
*
7183500 TTAGCGGCGCTTATTCAAAAACGCCGCTAAAGCCTACAGCA
1 TTAGCGGCGCTT-TTCAAAAACGCCGCTAAAGCC-CCAGCA
* * *
7183541 TTAGCGGTGCTTCTTAATAAAATGCCGCTAAAG
1 TTAGCGGCGCTT-TTCA-AAAACGCCGCTAAAG
7183574 ACTCGAAAGG
Statistics
Matches: 127, Mismatches: 14, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
35 14 0.11
36 18 0.14
41 48 0.38
42 46 0.36
43 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (39 bp):
TTAGCGGCGCTTTTCAAAAACGCCGCTAAAGCCCCAGCA
Found at i:7183470 original size:36 final size:37
Alignment explanation
Indices: 7183381--7183532 Score: 123
Period size: 42 Copynumber: 3.9 Consensus size: 37
7183371 TAAAATGTCC
* *
7183381 TTAGTGGCGCTTTTCTAGAAAACGCCGCTAAAGACCCCAGCA
1 TTAGCGGCGCTTTTCCAGAAAACGCCGCTAAAG----C-GCA
*
7183423 TTAGCGGCGCTTTTCCAGAAAACGCCGCTAAAG-GCT
1 TTAGCGGCGCTTTTCCAGAAAACGCCGCTAAAGCGCA
* * *
7183459 TTAGCGGCGCTTTTACA-AAAACGCCGTTAAAGCCCATAGAA
1 TTAGCGGCGCTTTTCCAGAAAACGCCGCTAAAG--C---GCA
7183500 TTAGCGGCGCTTATT-CA-AAAACGCCGCTAAAGC
1 TTAGCGGCGCTT-TTCCAGAAAACGCCGCTAAAGC
7183533 CTACAGCATT
Statistics
Matches: 95, Mismatches: 8, Indels: 17
0.79 0.07 0.14
Matches are distributed among these distances:
35 14 0.15
36 18 0.19
39 1 0.01
41 29 0.31
42 33 0.35
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.22
Consensus pattern (37 bp):
TTAGCGGCGCTTTTCCAGAAAACGCCGCTAAAGCGCA
Found at i:7183490 original size:35 final size:36
Alignment explanation
Indices: 7183423--7183490 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
7183413 GACCCCAGCA
*
7183423 TTAGCGGCGCTTTTCCAGAAAACGCCGCTAAAGGCT
1 TTAGCGGCGCTTTTACAGAAAACGCCGCTAAAGGCT
*
7183459 TTAGCGGCGCTTTTACA-AAAACGCCGTTAAAG
1 TTAGCGGCGCTTTTACAGAAAACGCCGCTAAAG
7183491 CCCATAGAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 14 0.47
36 16 0.53
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.24
Consensus pattern (36 bp):
TTAGCGGCGCTTTTACAGAAAACGCCGCTAAAGGCT
Found at i:7188823 original size:42 final size:42
Alignment explanation
Indices: 7188755--7188875 Score: 170
Period size: 42 Copynumber: 2.9 Consensus size: 42
7188745 TTAACTCATA
* * *
7188755 TGAGTTTCTATTTAACCCTAATGGGTTTCCGTTTAGCTCTTT
1 TGAGCTTCAATTTAACCCTTATGGGTTTCCGTTTAGCTCTTT
* *
7188797 TGAGCTTCAATTTAACCCTTATGGGTTTCCATTCAGCTCTTT
1 TGAGCTTCAATTTAACCCTTATGGGTTTCCGTTTAGCTCTTT
* * *
7188839 TGAGCTTCCATTCAACCCTTATGGGTTTCTGTTTAGC
1 TGAGCTTCAATTTAACCCTTATGGGTTTCCGTTTAGC
7188876 ACTTATGTGC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (42 bp):
TGAGCTTCAATTTAACCCTTATGGGTTTCCGTTTAGCTCTTT
Found at i:7188849 original size:21 final size:21
Alignment explanation
Indices: 7188789--7188852 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
7188779 GTTTCCGTTT
* *
7188789 AGCTCTTTTGAGCTTCAATTT
1 AGCTCTTTTGAGCTTCCATTC
* * * * *
7188810 AACCCTTATGGGTTTCCATTC
1 AGCTCTTTTGAGCTTCCATTC
7188831 AGCTCTTTTGAGCTTCCATTC
1 AGCTCTTTTGAGCTTCCATTC
7188852 A
1 A
7188853 ACCCTTATGG
Statistics
Matches: 31, Mismatches: 12, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.19, C:0.25, G:0.14, T:0.42
Consensus pattern (21 bp):
AGCTCTTTTGAGCTTCCATTC
Found at i:7193600 original size:20 final size:20
Alignment explanation
Indices: 7193564--7193601 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7193554 TCGTAAACTG
*
7193564 TTTAAGATTATGGTTATTAT
1 TTTAAGATTAAGGTTATTAT
7193584 TTTAA-ATTAAGGATTATT
1 TTTAAGATTAAGG-TTATT
7193602 TTTGGGAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.34, C:0.00, G:0.13, T:0.53
Consensus pattern (20 bp):
TTTAAGATTAAGGTTATTAT
Found at i:7219494 original size:21 final size:21
Alignment explanation
Indices: 7219450--7219555 Score: 115
Period size: 23 Copynumber: 4.9 Consensus size: 21
7219440 ATCAGTATAT
* *
7219450 GACACAT-AAGTGCCTAAAAC
1 GACACATAAAGTGCCTGATAC
* * *
7219470 GACACACAAGGTGCCTGATAT
1 GACACATAAAGTGCCTGATAC
*
7219491 GACACATAAAGAGCCTGAGATAC
1 GACACATAAAGTGCCT--GATAC
7219514 GACACATAAAGTGCCTGATGTAC
1 GACACATAAAGTGCCTGA--TAC
7219537 GACACATAAAGTGCCTGAT
1 GACACATAAAGTGCCTGAT
7219556 CGGCAAAGCC
Statistics
Matches: 71, Mismatches: 10, Indels: 9
0.79 0.11 0.10
Matches are distributed among these distances:
20 6 0.08
21 25 0.35
23 40 0.56
ACGTcount: A:0.39, C:0.23, G:0.21, T:0.18
Consensus pattern (21 bp):
GACACATAAAGTGCCTGATAC
Found at i:7219528 original size:44 final size:43
Alignment explanation
Indices: 7219446--7219554 Score: 132
Period size: 44 Copynumber: 2.5 Consensus size: 43
7219436 CCTGATCAGT
*
7219446 ATATGACACAT-AAGTGCCT-AAAACGACACACAAGGTGCCTG
1 ATATGACACATAAAGTGCCTGAAAACGACACACAAAGTGCCTG
* * *
7219487 ATATGACACATAAAGAGCCTGAGATACGACACATAAAGTGCCTG
1 ATATGACACATAAAGTGCCTGA-AAACGACACACAAAGTGCCTG
*
7219531 ATGTACGACACATAAAGTGCCTGA
1 A--TATGACACATAAAGTGCCTGA
7219555 TCGGCAAAGC
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
41 11 0.19
42 7 0.12
43 1 0.02
44 19 0.33
46 19 0.33
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.18
Consensus pattern (43 bp):
ATATGACACATAAAGTGCCTGAAAACGACACACAAAGTGCCTG
Found at i:7227416 original size:6 final size:6
Alignment explanation
Indices: 7227405--7227442 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
7227395 ACTTAAGTCC
7227405 GAATCT GAATCT GAATCT GAATCT GAATCT GAATCT GA
1 GAATCT GAATCT GAATCT GAATCT GAATCT GAATCT GA
7227443 CTGTAAATGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (6 bp):
GAATCT
Found at i:7234015 original size:16 final size:16
Alignment explanation
Indices: 7233994--7234027 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
7233984 GCCCATACCG
7233994 ACCCTATGGAAGGCCC
1 ACCCTATGGAAGGCCC
7234010 ACCCTATGGAAGGCCC
1 ACCCTATGGAAGGCCC
7234026 AC
1 AC
7234028 AGTCGATCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.38, G:0.24, T:0.12
Consensus pattern (16 bp):
ACCCTATGGAAGGCCC
Found at i:7237009 original size:16 final size:16
Alignment explanation
Indices: 7236988--7237038 Score: 84
Period size: 16 Copynumber: 3.2 Consensus size: 16
7236978 GAATTACTGT
7236988 TTACAACTCTATTCCA
1 TTACAACTCTATTCCA
*
7237004 TTACAACTCTATTCAA
1 TTACAACTCTATTCCA
*
7237020 TTATAACTCTATTCCA
1 TTACAACTCTATTCCA
7237036 TTA
1 TTA
7237039 TAGTGAACCA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.33, C:0.25, G:0.00, T:0.41
Consensus pattern (16 bp):
TTACAACTCTATTCCA
Found at i:7252000 original size:26 final size:26
Alignment explanation
Indices: 7251948--7251995 Score: 73
Period size: 24 Copynumber: 1.9 Consensus size: 26
7251938 AGAAAAAATT
*
7251948 ATAAATAATGAAAATATTAAATTTTA
1 ATAAATAATGAAAAAATTAAATTTTA
7251974 ATAAAT-AT-AAAAAATTAAATTT
1 ATAAATAATGAAAAAATTAAATTT
7251996 ATTAAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 13 0.62
25 2 0.10
26 6 0.29
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (26 bp):
ATAAATAATGAAAAAATTAAATTTTA
Found at i:7257439 original size:31 final size:33
Alignment explanation
Indices: 7257401--7257468 Score: 95
Period size: 31 Copynumber: 2.1 Consensus size: 33
7257391 AGCTTGGTAT
7257401 ACACTTAAATAAGGTTCATA-C-CATGATTCAA
1 ACACTTAAATAAGGTTCATATCGCATGATTCAA
* * *
7257432 ACACTTAAATAATGTTTATATCGCATGATTCAG
1 ACACTTAAATAAGGTTCATATCGCATGATTCAA
7257465 ACAC
1 ACAC
7257469 ATTGGTTAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
31 18 0.56
32 1 0.03
33 13 0.41
ACGTcount: A:0.40, C:0.19, G:0.10, T:0.31
Consensus pattern (33 bp):
ACACTTAAATAAGGTTCATATCGCATGATTCAA
Found at i:7263435 original size:2 final size:2
Alignment explanation
Indices: 7263395--7263420 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7263385 TGGCAGACTT
7263395 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
7263421 AGGTCTTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:7263733 original size:2 final size:2
Alignment explanation
Indices: 7263728--7263773 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
7263718 TATATTATGA
7263728 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7263770 AT AT
1 AT AT
7263774 TATTTCTANN
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7267834 original size:19 final size:18
Alignment explanation
Indices: 7267785--7267835 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
7267775 AAATCGAGTC
* *
7267785 ATTCGTTTCCAAAACATT
1 ATTCATTTCCAAATCATT
* *
7267803 ATTCATTTACAAATCGTT
1 ATTCATTTCCAAATCATT
7267821 ATTCAATTTCCAAAT
1 ATTC-ATTTCCAAAT
7267836 GTTTTTTCAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
18 18 0.67
19 9 0.33
ACGTcount: A:0.35, C:0.20, G:0.04, T:0.41
Consensus pattern (18 bp):
ATTCATTTCCAAATCATT
Found at i:7270613 original size:15 final size:14
Alignment explanation
Indices: 7270584--7270619 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
7270574 TATAAGGCAT
*
7270584 AATAAAATATTAAA
1 AATAAAATATAAAA
7270598 AATAAATATATAAAA
1 AATAAA-ATATAAAA
7270613 AATAAAA
1 AATAAAA
7270620 AACATCATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (14 bp):
AATAAAATATAAAA
Found at i:7273624 original size:13 final size:13
Alignment explanation
Indices: 7273606--7273677 Score: 58
Period size: 13 Copynumber: 5.2 Consensus size: 13
7273596 TAGGTTAGGG
7273606 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
*
7273619 TTAGGGTTTAGATTAGGG
1 TTAGGGTTT---TTA--A
7273637 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
*
7273650 TTAGGG--TTTAGG
1 TTAGGGTTTTTA-A
7273662 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
7273675 TTA
1 TTA
7273678 AATTAGGCTA
Statistics
Matches: 47, Mismatches: 4, Indels: 16
0.70 0.06 0.24
Matches are distributed among these distances:
11 4 0.09
12 6 0.13
13 18 0.38
14 4 0.09
15 3 0.06
16 3 0.06
18 9 0.19
ACGTcount: A:0.22, C:0.00, G:0.29, T:0.49
Consensus pattern (13 bp):
TTAGGGTTTTTAA
Found at i:7273692 original size:29 final size:29
Alignment explanation
Indices: 7273589--7273994 Score: 422
Period size: 29 Copynumber: 14.1 Consensus size: 29
7273579 ATGAAAAATT
*
7273589 ATTAAGTTAGGTTAGGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTAGGGTTTTTA
** *
7273618 ATTAGGGTTTAGATTAGGGTTAGGGTTTTTA
1 ATTA--AATTAGGTTAGGGTTAGGGTTTTTA
*
7273649 ATT--A--GGGTTTA-GGTTAGGGTTTTTA
1 ATTAAATTAGG-TTAGGGTTAGGGTTTTTA
*
7273674 ATTAAATTAGGCTAGGGTTAGGG-TTTTA
1 ATTAAATTAGGTTAGGGTTAGGGTTTTTA
* *
7273702 ATT--A--GGGTTTA-GGTTATGGTTTTTA
1 ATTAAATTAGG-TTAGGGTTAGGGTTTTTA
7273727 ATTAAATTAGGTTAGGGTTAGGGTTTTTTA
1 ATTAAATTAGGTTAGGGTTAGGG-TTTTTA
*
7273757 ATTAAATTAGGTT-GAAGTTAGGGTTTTTA
1 ATTAAATTAGGTTAG-GGTTAGGGTTTTTA
*** *
7273786 ATTGGGTTATGTTAGGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTAGGGTTTTTA
* * *
7273815 ATTAATTTAGGTTAGTGTTAGGGTTTGTA
1 ATTAAATTAGGTTAGGGTTAGGGTTTTTA
* *
7273844 ATTAAATTAGTTTAGGGTTAGGATTTTTTTA
1 ATTAAATTAGGTTAGGGTTAGG--GTTTTTA
* *
7273875 ATTAAGTTAAGTTAGGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTAGGGTTTTTA
** * *
7273904 ATTAGGTTATGTTAGGGTTTGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTAGGGTTTTTA
* *
7273933 ATTAAGTTAGGTTAGGGCTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTAGGGTTTTTA
7273962 ATTAAATTAGGTTAGGGTTAGGGTTTTTA
1 ATTAAATTAGGTTAGGGTTAGGGTTTTTA
7273991 ATTA
1 ATTA
7273995 NNNNNNNNNN
Statistics
Matches: 314, Mismatches: 43, Indels: 40
0.79 0.11 0.10
Matches are distributed among these distances:
24 9 0.03
25 28 0.09
26 4 0.01
27 2 0.01
28 13 0.04
29 182 0.58
30 27 0.09
31 49 0.16
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (29 bp):
ATTAAATTAGGTTAGGGTTAGGGTTTTTA
Found at i:7273829 original size:23 final size:24
Alignment explanation
Indices: 7273626--7273745 Score: 102
Period size: 25 Copynumber: 4.8 Consensus size: 24
7273616 TAATTAGGGT
7273626 TTAGA-TTAGGGTTAGGGTTTTTAA
1 TTAGATTTA-GGTTAGGGTTTTTAA
*
7273650 TTAGGGTTTAGGTTAGGGTTTTTAA
1 TTA-GATTTAGGTTAGGGTTTTTAA
*
7273675 TTAAATTAGGCTAGGGTTAGGG-TTTTAA
1 TTAGATT----TA-GGTTAGGGTTTTTAA
* *
7273703 TTAGGGTTTAGGTTATGGTTTTTAA
1 TTA-GATTTAGGTTAGGGTTTTTAA
*
7273728 TTA-AATTAGGTTAGGGTT
1 TTAGATTTAGGTTAGGGTT
7273746 AGGGTTTTTT
Statistics
Matches: 78, Mismatches: 9, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
23 12 0.15
24 12 0.15
25 30 0.38
26 3 0.04
28 11 0.14
29 10 0.13
ACGTcount: A:0.24, C:0.01, G:0.29, T:0.46
Consensus pattern (24 bp):
TTAGATTTAGGTTAGGGTTTTTAA
Found at i:7273912 original size:118 final size:116
Alignment explanation
Indices: 7273589--7273994 Score: 467
Period size: 118 Copynumber: 3.5 Consensus size: 116
7273579 ATGAAAAATT
** * *
7273589 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAGGGTTTAGATTAGGGTTAGG-GTTTTTAATTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTA--AATTAGGTTAGGGTTAGGTTTTTTTAATTA
* * ** * *
7273653 GGGT--TTA-GGTTAGGGTTTTTAATTAAATTAGGCTAGGGTTAGGG-TTTTA
64 AGTTAGTTAGGGTTAGGGTTTTTAATTAGGTTATGTTAGGGTTAGGGTTTTTA
* *
7273702 ATT-AG---GGTTTA-GGTTATGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTTAATTAA
1 ATTAAGTTAGG-TTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGTTTTTTTAATTAA
* * *
7273762 ATTAGGTT-GAAGTTAGGGTTTTTAATTGGGTTATGTTAGGGTTAGGGTTTTTA
65 GTTA-GTTAG-GGTTAGGGTTTTTAATTAGGTTATGTTAGGGTTAGGGTTTTTA
* * * *
7273815 ATTAATTTAGGTTAGTGTTAGGGTTTGTAATTAAATTAGTTTAGGGTTAGGATTTTTTTAATTAA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGG-TTTTTTTAATTAA
*
7273880 GTTAAGTTAGGGTTAGGGTTTTTAATTAGGTTATGTTAGGGTTTGGGTTTTTA
65 GTT-AGTTAGGGTTAGGGTTTTTAATTAGGTTATGTTAGGGTTAGGGTTTTTA
* *
7273933 ATTAAGTTAGGTTAGGGCTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGG-GTTTTTAATTA
1 ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGTTTTTTTAATTA
7273995 NNNNNNNNNN
Statistics
Matches: 247, Mismatches: 30, Indels: 29
0.81 0.10 0.09
Matches are distributed among these distances:
107 15 0.06
108 11 0.04
109 19 0.08
110 3 0.01
111 2 0.01
112 33 0.13
113 11 0.04
114 1 0.00
116 13 0.05
117 34 0.14
118 103 0.42
119 2 0.01
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (116 bp):
ATTAAGTTAGGTTAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGTTTTTTTAATTAAG
TTAGTTAGGGTTAGGGTTTTTAATTAGGTTATGTTAGGGTTAGGGTTTTTA
Found at i:7274723 original size:18 final size:18
Alignment explanation
Indices: 7274696--7274730 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7274686 CGGAAAAGGA
* *
7274696 TACATGTAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
7274714 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
7274731 AAACGCACCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.34, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:7276257 original size:38 final size:38
Alignment explanation
Indices: 7276206--7276282 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
7276196 GTCGTCACGT
7276206 GCCAAAAACCCGCTTCCCGCAGGTAGTTCTCTACCAAC
1 GCCAAAAACCCGCTTCCCGCAGGTAGTTCTCTACCAAC
*
7276244 GCCAAAAACCCGCTTCCCGTAGGTAGTTCTCTACCAAC
1 GCCAAAAACCCGCTTCCCGCAGGTAGTTCTCTACCAAC
7276282 G
1 G
7276283 GTGATGGATG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.26, C:0.38, G:0.17, T:0.19
Consensus pattern (38 bp):
GCCAAAAACCCGCTTCCCGCAGGTAGTTCTCTACCAAC
Found at i:7276611 original size:51 final size:51
Alignment explanation
Indices: 7276552--7276675 Score: 151
Period size: 51 Copynumber: 2.4 Consensus size: 51
7276542 TATTTTAAAA
* * *
7276552 AAGGAAATTGAGAGCAAATTGAAATTAAATATGGGTTTGA-GAGATTTTTGG
1 AAGGAAATTGAGAGGAAATTGAAATTAAATATGGATTT-ATGAGAATTTTGG
* *** **
7276603 AATGAAATTGAGAGGGGTTTTTAATTAAATATGGATTTATGAGAATTTTGG
1 AAGGAAATTGAGAGGAAATTGAAATTAAATATGGATTTATGAGAATTTTGG
7276654 AAGGAAATTGAGAGGAAATTGA
1 AAGGAAATTGAGAGGAAATTGA
7276676 GAGGAAATAT
Statistics
Matches: 57, Mismatches: 15, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
50 1 0.02
51 56 0.98
ACGTcount: A:0.40, C:0.01, G:0.27, T:0.32
Consensus pattern (51 bp):
AAGGAAATTGAGAGGAAATTGAAATTAAATATGGATTTATGAGAATTTTGG
Found at i:7276671 original size:11 final size:11
Alignment explanation
Indices: 7276655--7276690 Score: 63
Period size: 11 Copynumber: 3.2 Consensus size: 11
7276645 GAATTTTGGA
7276655 AGGAAATTGAG
1 AGGAAATTGAG
7276666 AGGAAATTGAG
1 AGGAAATTGAG
7276677 AGGAAATATGAG
1 AGGAAAT-TGAG
7276689 AG
1 AG
7276691 ATGATTTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 18 0.75
12 6 0.25
ACGTcount: A:0.47, C:0.00, G:0.36, T:0.17
Consensus pattern (11 bp):
AGGAAATTGAG
Found at i:7277945 original size:24 final size:25
Alignment explanation
Indices: 7277913--7277962 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
7277903 AACAGAACAA
*
7277913 AGCAAAACAAAACAAATCA-AGCAG
1 AGCAAAACAAAACAAAGCAGAGCAG
* *
7277937 AGCATAACAGAACAAAGCAGAGCAG
1 AGCAAAACAAAACAAAGCAGAGCAG
7277962 A
1 A
7277963 ACAGAACTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 16 0.73
25 6 0.27
ACGTcount: A:0.58, C:0.20, G:0.18, T:0.04
Consensus pattern (25 bp):
AGCAAAACAAAACAAAGCAGAGCAG
Found at i:7277956 original size:20 final size:20
Alignment explanation
Indices: 7277902--7277969 Score: 77
Period size: 20 Copynumber: 3.5 Consensus size: 20
7277892 AGAACTGAAC
* *
7277902 TAACAGAACAAAGCAAAACA
1 TAACAGAACAAAGCAGAGCA
*
7277922 AAACA-AATC-AAGCAGAGCA
1 TAACAGAA-CAAAGCAGAGCA
7277941 TAACAGAACAAAGCAGAGCA
1 TAACAGAACAAAGCAGAGCA
*
7277961 GAACAGAAC
1 TAACAGAAC
7277970 TATACAGAGG
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
19 15 0.38
20 25 0.62
ACGTcount: A:0.59, C:0.21, G:0.16, T:0.04
Consensus pattern (20 bp):
TAACAGAACAAAGCAGAGCA
Found at i:7280216 original size:7 final size:7
Alignment explanation
Indices: 7280204--7280233 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
7280194 TTTTTATTAT
7280204 TATTTGA
1 TATTTGA
7280211 TATTTGA
1 TATTTGA
7280218 TATTTGA
1 TATTTGA
*
7280225 TATATGA
1 TATTTGA
7280232 TA
1 TA
7280234 GTTTTACTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.33, C:0.00, G:0.13, T:0.53
Consensus pattern (7 bp):
TATTTGA
Found at i:7281776 original size:34 final size:34
Alignment explanation
Indices: 7281733--7281801 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
7281723 TCCTCAATGA
7281733 TAGTTTTTCCTTCAGTTGCAACTGAAGATGCTAC
1 TAGTTTTTCCTTCAGTTGCAACTGAAGATGCTAC
7281767 TAGTTTTTCCTTCAGTTGCAACTGAAGATGCTAC
1 TAGTTTTTCCTTCAGTTGCAACTGAAGATGCTAC
7281801 T
1 T
7281802 TGTAGTGCGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.39
Consensus pattern (34 bp):
TAGTTTTTCCTTCAGTTGCAACTGAAGATGCTAC
Found at i:7284342 original size:17 final size:17
Alignment explanation
Indices: 7284320--7284361 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
7284310 GAGTAGGGGA
7284320 GAGATGG-TGGGGAGAGG
1 GAGATGGAT-GGGAGAGG
7284337 GAGATGGATGGGAGAGG
1 GAGATGGATGGGAGAGG
*
7284354 GGGATGGA
1 GAGATGGA
7284362 AAATGGAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 22 0.96
18 1 0.04
ACGTcount: A:0.26, C:0.00, G:0.62, T:0.12
Consensus pattern (17 bp):
GAGATGGATGGGAGAGG
Found at i:7284357 original size:19 final size:17
Alignment explanation
Indices: 7284314--7284357 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
7284304 GAATCAGAGT
7284314 AGGGGAGAGATGGTGGGG
1 AGGGG-GAGATGGTGGGG
*
7284332 AGAGGGAGATGGATGGGAG
1 AGGGGGAGATGG-TGGG-G
7284351 AGGGGGA
1 AGGGGGA
7284358 TGGAAAATGG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 7 0.32
18 8 0.36
19 7 0.32
ACGTcount: A:0.27, C:0.00, G:0.64, T:0.09
Consensus pattern (17 bp):
AGGGGGAGATGGTGGGG
Found at i:7284404 original size:30 final size:30
Alignment explanation
Indices: 7284368--7284446 Score: 115
Period size: 30 Copynumber: 2.6 Consensus size: 30
7284358 TGGAAAATGG
*
7284368 AAGTCTGTAACGGAAAAT-AGTACCTTTGTT
1 AAGTCTGTAACGGAAAATGA-TACATTTGTT
7284398 AAGTCTGTAACGGAAAATGATACATTTGTT
1 AAGTCTGTAACGGAAAATGATACATTTGTT
* *
7284428 ACGTCTGTAACGAAAAATG
1 AAGTCTGTAACGGAAAATG
7284447 GTTAGTGGTG
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
30 44 0.98
31 1 0.02
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (30 bp):
AAGTCTGTAACGGAAAATGATACATTTGTT
Found at i:7285317 original size:3 final size:3
Alignment explanation
Indices: 7285311--7285344 Score: 59
Period size: 3 Copynumber: 11.0 Consensus size: 3
7285301 CTTCTTCTTC
7285311 TTA TTA TTA TTA TTA TTA TTA TTA TTAA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TT-A TTA TTA
7285345 AAATAGTCAC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 27 0.90
4 3 0.10
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:7292220 original size:2 final size:2
Alignment explanation
Indices: 7292215--7292240 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7292205 TTTCATAGGT
7292215 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
7292241 GTGCACACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:7299045 original size:29 final size:27
Alignment explanation
Indices: 7298984--7299046 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
7298974 ATTTGGGCTT
*
7298984 ATTTGATTCATTTCAATAGTAGGACTA
1 ATTTGATCCATTTCAATAGTAGGACTA
*
7299011 AATTGATCCATTT-AATAGTAAAGGAACTA
1 ATTTGATCCATTTCAATAGT--AGG-ACTA
7299040 ATTTGAT
1 ATTTGAT
7299047 GAGGTCCCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 6 0.20
27 11 0.37
28 3 0.10
29 10 0.33
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (27 bp):
ATTTGATCCATTTCAATAGTAGGACTA
Found at i:7305553 original size:64 final size:65
Alignment explanation
Indices: 7305445--7305574 Score: 217
Period size: 64 Copynumber: 2.0 Consensus size: 65
7305435 GAAACTATCA
* *
7305445 GATGATTTGGACCCAAGCTGTTTTGGTTAACGCGCGTTAGGGGGAGTGTGCAATGACAGCCCAAT
1 GATGATTTGAACCCAAGCTGTTTTGGTTAACGCGCGTTAGGGGGAATGTGCAATGACAGCCCAAT
* *
7305510 GATGATTTGAACCCAAGCTG-TTTGGTTATCGCGCGTTATGGGGAATGTGCAATGACAGCCCAAT
1 GATGATTTGAACCCAAGCTGTTTTGGTTAACGCGCGTTAGGGGGAATGTGCAATGACAGCCCAAT
7305574 G
1 G
7305575 TTTATTGGAC
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
64 42 0.69
65 19 0.31
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (65 bp):
GATGATTTGAACCCAAGCTGTTTTGGTTAACGCGCGTTAGGGGGAATGTGCAATGACAGCCCAAT
Found at i:7309828 original size:27 final size:27
Alignment explanation
Indices: 7309798--7309872 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
7309788 GAATGAATCA
*
7309798 CCTTTGTGGTATACTCTGTATATATAG
1 CCTTTGTGGTATACTCTATATATATAG
* * *
7309825 CCTTTGTGGCATACTTTATATATATGG
1 CCTTTGTGGTATACTCTATATATATAG
*
7309852 CCTTTGTGGTGTACTCTATAT
1 CCTTTGTGGTATACTCTATAT
7309873 GGTTCACCTT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.20, C:0.16, G:0.19, T:0.45
Consensus pattern (27 bp):
CCTTTGTGGTATACTCTATATATATAG
Found at i:7310420 original size:23 final size:22
Alignment explanation
Indices: 7310368--7310421 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
7310358 TATTTATCAG
7310368 TATGGATATGTCTGGTATTGAAT
1 TATGG-TATGTCTGGTATTGAAT
* *
7310391 CAAGGTATGTCTGAGTA-TGAATT
1 TATGGTATGTCTG-GTATTGAA-T
7310414 TATGGTAT
1 TATGGTAT
7310422 TATATTCTGC
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
22 12 0.48
23 13 0.52
ACGTcount: A:0.28, C:0.06, G:0.26, T:0.41
Consensus pattern (22 bp):
TATGGTATGTCTGGTATTGAAT
Found at i:7318042 original size:18 final size:19
Alignment explanation
Indices: 7318000--7318042 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
7317990 TGAGTTGGGA
*
7318000 AAATAA-TTTAATTAAATT
1 AAATAATTTTAAATAAATT
*
7318018 AATTAATTTTAAATAAA-T
1 AAATAATTTTAAATAAATT
7318036 AAATAAT
1 AAATAAT
7318043 ATTTTGGGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
AAATAATTTTAAATAAATT
Found at i:7329021 original size:17 final size:19
Alignment explanation
Indices: 7328981--7329021 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
7328971 TTTCCAAAAC
7328981 ATTTTTCTCATTCCTTTCT
1 ATTTTTCTCATTCCTTTCT
*
7329000 A-TTTTCT-ATTTCTTT-T
1 ATTTTTCTCATTCCTTTCT
7329016 ATTTTT
1 ATTTTT
7329022 GCTTCTCTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 2 0.10
17 11 0.55
18 6 0.30
19 1 0.05
ACGTcount: A:0.12, C:0.17, G:0.00, T:0.71
Consensus pattern (19 bp):
ATTTTTCTCATTCCTTTCT
Found at i:7330147 original size:97 final size:97
Alignment explanation
Indices: 7329980--7330176 Score: 306
Period size: 97 Copynumber: 2.0 Consensus size: 97
7329970 ATGTTTAAGG
* *
7329980 TATGTGATTTATTCAGGTAGGATCCATGCTCTGTTAATTTTGATGATTCATTTCTGTGTGGCTAT
1 TATGTGATTTATTCAAGTAGAATCCATGCTCTGTTAATTTTGATGATTCATTTCTGTGTGGCTAT
* *
7330045 TTTGGATGTA-GACATGTGATATCTGAATATGT
66 GTTGGATG-AGGACATGTGATATCTGAACATGT
* * * *
7330077 TATGTGATTTATTCAAGTATAATCCATGCTTTGTTAATTTTGATGATTCATTTCTGTGTTGCTGT
1 TATGTGATTTATTCAAGTAGAATCCATGCTCTGTTAATTTTGATGATTCATTTCTGTGTGGCTAT
7330142 GTTGGATGAGGACATGTGATATCTGAACATGT
66 GTTGGATGAGGACATGTGATATCTGAACATGT
7330174 TAT
1 TAT
7330177 TGTGTCTGAT
Statistics
Matches: 91, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
96 1 0.01
97 90 0.99
ACGTcount: A:0.23, C:0.10, G:0.22, T:0.45
Consensus pattern (97 bp):
TATGTGATTTATTCAAGTAGAATCCATGCTCTGTTAATTTTGATGATTCATTTCTGTGTGGCTAT
GTTGGATGAGGACATGTGATATCTGAACATGT
Found at i:7334221 original size:17 final size:17
Alignment explanation
Indices: 7334201--7334272 Score: 66
Period size: 17 Copynumber: 4.4 Consensus size: 17
7334191 CCAATAATAA
7334201 TAATATTTTAA-TAGATT
1 TAATATTTTAATTA-ATT
7334218 TAATA-TTTAATTTAATT
1 TAATATTTTAA-TTAATT
7334235 TAATA-TTTATATTAA--
1 TAATATTTTA-ATTAATT
*
7334250 TAGTATTTT-ATTAATT
1 TAATATTTTAATTAATT
7334266 TAATATT
1 TAATATT
7334273 AGAGTGATTA
Statistics
Matches: 47, Mismatches: 2, Indels: 13
0.76 0.03 0.21
Matches are distributed among these distances:
14 5 0.11
15 4 0.09
16 14 0.30
17 21 0.45
18 3 0.06
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (17 bp):
TAATATTTTAATTAATT
Found at i:7338918 original size:7 final size:7
Alignment explanation
Indices: 7338908--7338937 Score: 51
Period size: 7 Copynumber: 4.1 Consensus size: 7
7338898 TTTTTATTAA
7338908 AAAAAAC
1 AAAAAAC
7338915 AAAAAAC
1 AAAAAAC
7338922 AAAAAAC
1 AAAAAAC
7338929 AAAAGAAC
1 AAAA-AAC
7338937 A
1 A
7338938 CTGGTTTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.82
8 4 0.18
ACGTcount: A:0.83, C:0.13, G:0.03, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Found at i:7348991 original size:41 final size:40
Alignment explanation
Indices: 7348934--7349180 Score: 250
Period size: 41 Copynumber: 6.1 Consensus size: 40
7348924 TAACATACCA
7348934 GCACAAAGCCTGATATAATACATCGACACAAAGCCTGCTAG
1 GCACAAAGCCTGATATAATACA-CGACACAAAGCCTGCTAG
* * * *
7348975 GCACAAAGCGTGATATAATGCACTGGCACAAAGCCTTCTAG
1 GCACAAAGCCTGATATAATACAC-GACACAAAGCCTGCTAG
* * *
7349016 GCACAAAGCCTAATATAGTATATCGACACAAAGCCTGCTAG
1 GCACAAAGCCTGATATAATACA-CGACACAAAGCCTGCTAG
* * * * *
7349057 GTACAGAGCCCGATATTATACACCGACACAAAGCCTGTTAG
1 GCACAAAGCCTGATATAATACA-CGACACAAAGCCTGCTAG
* *
7349098 GCACAAAGCGTAATATAATACACTGACACAAAGCCTGCTAG
1 GCACAAAGCCTGATATAATACAC-GACACAAAGCCTGCTAG
* * *
7349139 GCACAGAA-CC-CAAAT-AT-CACCGGCACAAAGCCTGCTAG
1 GCACA-AAGCCTGATATAATACA-CGACACAAAGCCTGCTAG
7349177 GCAC
1 GCAC
7349181 GTAGCCCAAA
Statistics
Matches: 170, Mismatches: 31, Indels: 13
0.79 0.14 0.06
Matches are distributed among these distances:
38 22 0.13
39 3 0.02
40 5 0.03
41 137 0.81
42 3 0.02
ACGTcount: A:0.37, C:0.27, G:0.19, T:0.17
Consensus pattern (40 bp):
GCACAAAGCCTGATATAATACACGACACAAAGCCTGCTAG
Found at i:7349072 original size:82 final size:80
Alignment explanation
Indices: 7348934--7349180 Score: 302
Period size: 82 Copynumber: 3.0 Consensus size: 80
7348924 TAACATACCA
* * ** *
7348934 GCACAAAGCCTGATATAATACATCGACACAAAGCCTGCTAGGCACAAAGCGTGATATAATGCACT
1 GCACAAAGCCTAATATAATACATCGACACAAAGCCTGCTAGGCACAGAGCCCGATAT-AT-CACC
7348999 GGCACAAAGCCTTCTAG
64 GGCACAAAGCCTTCTAG
* * *
7349016 GCACAAAGCCTAATATAGTATATCGACACAAAGCCTGCTAGGTACAGAGCCCGATATTATACACC
1 GCACAAAGCCTAATATAATACATCGACACAAAGCCTGCTAGGCACAGAGCCCGATA-TAT-CACC
*
7349081 GACACAAAGCCTGT-TAG
64 GGCACAAAGCCT-TCTAG
* * *
7349098 GCACAAAGCGTAATATAATACA-CTGACACAAAGCCTGCTAGGCACAGAACCC-AAATATCACCG
1 GCACAAAGCCTAATATAATACATC-GACACAAAGCCTGCTAGGCACAGAGCCCGATATATCACCG
*
7349161 GCACAAAGCCTGCTAG
65 GCACAAAGCCTTCTAG
7349177 GCAC
1 GCAC
7349181 GTAGCCCAAA
Statistics
Matches: 143, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
79 22 0.15
80 3 0.02
81 3 0.02
82 113 0.79
83 2 0.01
ACGTcount: A:0.37, C:0.27, G:0.19, T:0.17
Consensus pattern (80 bp):
GCACAAAGCCTAATATAATACATCGACACAAAGCCTGCTAGGCACAGAGCCCGATATATCACCGG
CACAAAGCCTTCTAG
Found at i:7352968 original size:51 final size:51
Alignment explanation
Indices: 7352892--7353110 Score: 375
Period size: 51 Copynumber: 4.3 Consensus size: 51
7352882 ACTTCTGATC
*
7352892 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTAATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
*
7352943 AGTGACAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
* * *
7352994 AGTGACAAGCGATGAGTGGTAGCTTTAGCTACACTTATCTGGTCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
* *
7353045 AGTGACAAGTGATGAGTGGTAGCTTTAGCTACACTTATCTGATCAGGGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
7353096 AGTGACAAGTGATAA
1 AGTGACAAGTGATAA
7353111 ATGTGATCCG
Statistics
Matches: 158, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 158 1.00
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.28
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
Found at i:7357474 original size:12 final size:12
Alignment explanation
Indices: 7357439--7357475 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
7357429 CCACACGCTT
*
7357439 GTGTGCTAGGCT
1 GTGTGCTAGGCC
7357451 GTGTGCTAGGCC
1 GTGTGCTAGGCC
*
7357463 GTGTACTAGGCC
1 GTGTGCTAGGCC
7357475 G
1 G
7357476 ATGGATAGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.11, C:0.22, G:0.41, T:0.27
Consensus pattern (12 bp):
GTGTGCTAGGCC
Found at i:7358025 original size:25 final size:24
Alignment explanation
Indices: 7357997--7358051 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
7357987 AAGCTCTTCC
*
7357997 GAGCCATCTAACGGGAAGCTCATGA
1 GAGCCAT-GAACGGGAAGCTCATGA
* * *
7358022 GAGCCGTGATCGGGAAGCTCATGT
1 GAGCCATGAACGGGAAGCTCATGA
7358046 GAGCCA
1 GAGCCA
7358052 ATATTGGGAA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 19 0.76
25 6 0.24
ACGTcount: A:0.27, C:0.24, G:0.33, T:0.16
Consensus pattern (24 bp):
GAGCCATGAACGGGAAGCTCATGA
Found at i:7361355 original size:24 final size:24
Alignment explanation
Indices: 7361323--7361369 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7361313 TTCCATTACT
7361323 ATTATTATTA-CATTATTTACTATC
1 ATTATTATTATCA-TATTTACTATC
*
7361347 ATTATTATTATCATATTTTCTAT
1 ATTATTATTATCATATTTACTAT
7361370 ACATATACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 19 0.90
25 2 0.10
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (24 bp):
ATTATTATTATCATATTTACTATC
Found at i:7361360 original size:12 final size:12
Alignment explanation
Indices: 7361323--7361360 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
7361313 TTCCATTACT
7361323 ATTATTATTA-C
1 ATTATTATTATC
*
7361334 ATTATTTACTATC
1 ATTA-TTATTATC
7361347 ATTATTATTATC
1 ATTATTATTATC
7361359 AT
1 AT
7361361 ATTTTCTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 4 0.17
12 14 0.61
13 5 0.22
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.55
Consensus pattern (12 bp):
ATTATTATTATC
Found at i:7361574 original size:9 final size:8
Alignment explanation
Indices: 7361562--7361594 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
7361552 TTTTTTAACT
7361562 TTTATATA
1 TTTATATA
7361570 CTTTATAT-
1 -TTTATATA
7361578 TTTATATA
1 TTTATATA
7361586 TTTATATA
1 TTTATATA
7361594 T
1 T
7361595 ACTTATACAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
7 7 0.30
8 9 0.39
9 7 0.30
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (8 bp):
TTTATATA
Found at i:7361897 original size:181 final size:181
Alignment explanation
Indices: 7361688--7362050 Score: 726
Period size: 181 Copynumber: 2.0 Consensus size: 181
7361678 CATATATACA
7361688 CCTTTTTTTATGTATTAGTTTTTTTGTTTGATATATTCCATTACTTTTTATATGTATACTTGTAT
1 CCTTTTTTTATGTATTAGTTTTTTTGTTTGATATATTCCATTACTTTTTATATGTATACTTGTAT
7361753 ATGTATGTTAAATATATGCATACACATATTTTTAATTTTTACTTGTATGTGCTTGTATATATATA
66 ATGTATGTTAAATATATGCATACACATATTTTTAATTTTTACTTGTATGTGCTTGTATATATATA
7361818 TATATATTTTGTAAATACATATATACACAGTTTAAATTAAAATATTTGTTT
131 TATATATTTTGTAAATACATATATACACAGTTTAAATTAAAATATTTGTTT
7361869 CCTTTTTTTATGTATTAGTTTTTTTGTTTGATATATTCCATTACTTTTTATATGTATACTTGTAT
1 CCTTTTTTTATGTATTAGTTTTTTTGTTTGATATATTCCATTACTTTTTATATGTATACTTGTAT
7361934 ATGTATGTTAAATATATGCATACACATATTTTTAATTTTTACTTGTATGTGCTTGTATATATATA
66 ATGTATGTTAAATATATGCATACACATATTTTTAATTTTTACTTGTATGTGCTTGTATATATATA
7361999 TATATATTTTGTAAATACATATATACACAGTTTAAATTAAAATATTTGTTT
131 TATATATTTTGTAAATACATATATACACAGTTTAAATTAAAATATTTGTTT
7362050 C
1 C
7362051 ATATCGTACA
Statistics
Matches: 182, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
181 182 1.00
ACGTcount: A:0.30, C:0.08, G:0.09, T:0.53
Consensus pattern (181 bp):
CCTTTTTTTATGTATTAGTTTTTTTGTTTGATATATTCCATTACTTTTTATATGTATACTTGTAT
ATGTATGTTAAATATATGCATACACATATTTTTAATTTTTACTTGTATGTGCTTGTATATATATA
TATATATTTTGTAAATACATATATACACAGTTTAAATTAAAATATTTGTTT
Found at i:7363955 original size:220 final size:220
Alignment explanation
Indices: 7363573--7364013 Score: 882
Period size: 220 Copynumber: 2.0 Consensus size: 220
7363563 GTTACGACCT
7363573 AGATCAAACAAAAAGGAGCTCAAATTCGCTAGATGCATCTTAATATCTGAATGGTCGATGTCTTT
1 AGATCAAACAAAAAGGAGCTCAAATTCGCTAGATGCATCTTAATATCTGAATGGTCGATGTCTTT
7363638 GCTTGGAGTACGAGGGCGAAGCCGTATATATATATCCGCTTTGTGTAAAGAGATTTGTTTTCTAG
66 GCTTGGAGTACGAGGGCGAAGCCGTATATATATATCCGCTTTGTGTAAAGAGATTTGTTTTCTAG
7363703 AGAAGTTTTTCTAGTAAATAATTGAACCAGAATCAACATCTCTTTTGCATTCATTTCACGCATTT
131 AGAAGTTTTTCTAGTAAATAATTGAACCAGAATCAACATCTCTTTTGCATTCATTTCACGCATTT
7363768 GTATTACATTACATCATAAGCATTA
196 GTATTACATTACATCATAAGCATTA
7363793 AGATCAAACAAAAAGGAGCTCAAATTCGCTAGATGCATCTTAATATCTGAATGGTCGATGTCTTT
1 AGATCAAACAAAAAGGAGCTCAAATTCGCTAGATGCATCTTAATATCTGAATGGTCGATGTCTTT
7363858 GCTTGGAGTACGAGGGCGAAGCCGTATATATATATCCGCTTTGTGTAAAGAGATTTGTTTTCTAG
66 GCTTGGAGTACGAGGGCGAAGCCGTATATATATATCCGCTTTGTGTAAAGAGATTTGTTTTCTAG
7363923 AGAAGTTTTTCTAGTAAATAATTGAACCAGAATCAACATCTCTTTTGCATTCATTTCACGCATTT
131 AGAAGTTTTTCTAGTAAATAATTGAACCAGAATCAACATCTCTTTTGCATTCATTTCACGCATTT
7363988 GTATTACATTACATCATAAGCATTA
196 GTATTACATTACATCATAAGCATTA
7364013 A
1 A
7364014 ACACCGTTAA
Statistics
Matches: 221, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
220 221 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (220 bp):
AGATCAAACAAAAAGGAGCTCAAATTCGCTAGATGCATCTTAATATCTGAATGGTCGATGTCTTT
GCTTGGAGTACGAGGGCGAAGCCGTATATATATATCCGCTTTGTGTAAAGAGATTTGTTTTCTAG
AGAAGTTTTTCTAGTAAATAATTGAACCAGAATCAACATCTCTTTTGCATTCATTTCACGCATTT
GTATTACATTACATCATAAGCATTA
Found at i:7368335 original size:44 final size:44
Alignment explanation
Indices: 7368196--7368363 Score: 232
Period size: 44 Copynumber: 3.8 Consensus size: 44
7368186 GTTGAAAGGC
*
7368196 AGCATATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
***
7368240 AGCAGATCTTGTCTTCCCATATTAGTG-GTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCATGTATT-G-GCGTGAAGTAGATCGAAGAA
* *
7368285 AGCAGATCTTGTCTTTATGTATCGGCGTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
* *
7368329 AACAGATCTTATCTTCATGTATTGGCG-GAAGTAGA
1 AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGA
7368364 GGTGCTCATG
Statistics
Matches: 108, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
43 9 0.08
44 61 0.56
45 37 0.34
46 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.30
Consensus pattern (44 bp):
AGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
Found at i:7371656 original size:44 final size:44
Alignment explanation
Indices: 7371593--7372628 Score: 1723
Period size: 44 Copynumber: 23.5 Consensus size: 44
7371583 AGCACCTTTA
7371593 GCGTGAAGTAGATCGAAGAAAACA-ACTCTTGTCTTCATGTATTG
1 GCGTGAAGTAGATCGAAGAAAACAGA-TCTTGTCTTCATGTATTG
*
7371637 GCGTGAAGTAGATCGAAGAAAATAGATCTTGTCTTCATGTATTG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
7371681 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
* * *** *
7371725 GCGTGAAGTAGATCGAAGAAAGCATATCTTGTCTTCCCATACTG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
* * * *
7371769 GTGGTGAAGTAGATTGAAGAAAGCAGATCTTGTCTTCATGTATCG
1 G-CGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
*
7371814 GCGTGAAGTAGATCGAAGAAAACATATCTTGTCTTCATGTATTG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
*
7371858 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATCG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
* * *
7371902 GCGTGAAGTAGATCGAAGAAAACAGATATTATCTTTATGTATTG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
*
7371946 GCGTGAAGTAGATCGAATAAAACAGATCTTGTCTTCATGTATTG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
*
7371990 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATCG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
* * *** *
7372034 GCGTGAAGTAGATCAAAGAAAGCAGATCTTGTCTTCCCATACTG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
* * * * * **
7372078 GTGGTGAAGTAAATTGAAGAAAGCAAATCTTGTCTTCATGTATCA
1 G-CGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
7372123 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
* * *
7372167 GCGTGAAGTAGATTGAAGAAAATAGATCTTGTCTTCATGTATCG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
7372211 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
7372255 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
7372299 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
*
7372343 GCGTGAAGTAGATAGAAGAAAACAGATCTTGTCTTCATGTATTG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
7372387 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
7372431 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
7372475 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
7372519 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
7372563 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
7372607 GCGTGAAGTAGATCGAAGAAAA
1 GCGTGAAGTAGATCGAAGAAAA
7372629 TATTGACGTG
Statistics
Matches: 923, Mismatches: 66, Indels: 6
0.93 0.07 0.01
Matches are distributed among these distances:
44 853 0.92
45 70 0.08
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (44 bp):
GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTG
Found at i:7371975 original size:132 final size:132
Alignment explanation
Indices: 7371593--7372914 Score: 1837
Period size: 132 Copynumber: 10.1 Consensus size: 132
7371583 AGCACCTTTA
7371593 GCGTGAAGTAGATCGAAGAAAACA-ACTCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
1 GCGTGAAGTAGATCGAAGAAAACAGA-TCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAA
*
7371657 AATAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTA
65 AACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTA
7371722 TTG
130 TTG
* * *** * * *
7371725 GCGTGAAGTAGATCGAAGAAAGCATATCTTGTCTTCCCATACTGGTGGTGAAGTAGATTGAAGAA
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAA
* * *
7371790 AGCAGATCTTGTCTTCATGTATCGGCGTGAAGTAGATCGAAGAAAACATATCTTGTCTTCATGTA
65 AACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTA
7371855 TTG
130 TTG
*
7371858 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATCGGCGTGAAGTAGATCGAAGAAA
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAA
* * * *
7371923 ACAGATATTATCTTTATGTATTGGCGTGAAGTAGATCGAATAAAACAGATCTTGTCTTCATGTAT
66 ACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTAT
7371988 TG
131 TG
* *
7371990 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATCGGCGTGAAGTAGATCAAAGAAA
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAA
* *** * * * * * *
7372055 GCAGATCTTGTCTTCCCATACTGGTGGTGAAGTAAATTGAAGAAAGCAAATCTTGTCTTCATGTA
66 ACAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTA
**
7372120 TCA
130 TTG
*
7372123 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATTGAAGAAA
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAA
* *
7372188 ATAGATCTTGTCTTCATGTATCGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTAT
66 ACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTAT
7372253 TG
131 TG
7372255 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAA
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAA
*
7372320 ACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATAGAAGAAAACAGATCTTGTCTTCATGTAT
66 ACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTAT
7372385 TG
131 TG
7372387 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAA
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAA
7372452 ACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTAT
66 ACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTAT
7372517 TG
131 TG
7372519 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAA
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAA
* * * * *
7372584 ACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG--AA-A-ATATTGACGTGAAGTA-
66 ACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTAT
7372644 --
131 TG
* * * *
7372644 G-ATCGAAGATAG--C--AG--ATC---T--TGTCTTTATGTATTGACGTGAAGTAGATCGAAGA
1 GCGT-GAAG-TAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGA
* * * * * * * *
7372697 TAGCAGATCTTGTCTTTATGTATTGACGTAAAGTAGATCGAAGATAGCAGATCTTGTCTTTATGT
64 AAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGT
7372762 ATTG
129 ATTG
* * *
7372766 ACGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAA
1 GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAA
* * * ** ** *
7372831 GCAGATCTTGTCTTTATGTATTGGGGCAAAGTAGAT--AAGAAAGTAGATCTTGTCTTCTCATAT
66 ACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTC-T-TCATGT
7372894 ATTG
129 ATTG
*
7372898 GC--GAAATAGATCGAAGA
1 GCGTGAAGTAGATCGAAGA
7372915 TACAAGTCTT
Statistics
Matches: 1063, Mismatches: 101, Indels: 54
0.87 0.08 0.04
Matches are distributed among these distances:
115 70 0.07
117 2 0.00
118 1 0.00
119 11 0.01
120 2 0.00
121 3 0.00
122 6 0.01
123 2 0.00
124 2 0.00
125 7 0.01
126 3 0.00
127 2 0.00
128 11 0.01
129 1 0.00
130 33 0.03
131 1 0.00
132 672 0.63
133 234 0.22
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (132 bp):
GCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAA
ACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTAT
TG
Found at i:7372643 original size:71 final size:71
Alignment explanation
Indices: 7372558--7372696 Score: 233
Period size: 71 Copynumber: 2.0 Consensus size: 71
7372548 TGTCTTCATG
* *
7372558 TATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
1 TATTGACGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGACGTGAAGTAGATCGA
7372623 AGAAAA
66 AGAAAA
* * *
7372629 TATTGACGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTTATGTATTGACGTGAAGTAGATCGA
1 TATTGACGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGACGTGAAGTAGATCGA
7372694 AGA
66 AGA
7372697 TAGCAGATCT
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.29
Consensus pattern (71 bp):
TATTGACGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGACGTGAAGTAGATCGA
AGAAAA
Found at i:7372718 original size:115 final size:115
Alignment explanation
Indices: 7372514--7372740 Score: 364
Period size: 115 Copynumber: 2.0 Consensus size: 115
7372504 TGTCTTCATG
* *
7372514 TATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
1 TATTGACGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGACGTGAAGTAGATCGA
* *
7372579 AGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAA
66 AGAAAACAGATCTTGTCTTCATGTATTGACGTAAAGTAGATCGAAGAAAA
* * *
7372629 TATTGACGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTTATGTATTGACGTGAAGTAGATCGA
1 TATTGACGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGACGTGAAGTAGATCGA
* * *
7372694 AGATAGCAGATCTTGTCTTTATGTATTGACGTAAAGTAGATCGAAGA
66 AGAAAACAGATCTTGTCTTCATGTATTGACGTAAAGTAGATCGAAGA
7372741 TAGCAGATCT
Statistics
Matches: 102, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
115 102 1.00
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (115 bp):
TATTGACGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGACGTGAAGTAGATCGA
AGAAAACAGATCTTGTCTTCATGTATTGACGTAAAGTAGATCGAAGAAAA
Found at i:7372762 original size:159 final size:159
Alignment explanation
Indices: 7372470--7372784 Score: 504
Period size: 159 Copynumber: 2.0 Consensus size: 159
7372460 TGTCTTCATG
* *
7372470 TATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
1 TATTGACGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGACGTGAAGTAGATCGA
* *
7372535 AGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCA
66 AGAAAACAGATCTTGTCTTCATGTATTGACGTAAAGTAGATCGAAGAAAACAGATCTTGTCTTCA
*
7372600 TGTATTGGCGTGAAGTAGATCGAAGAAAA
131 TGTATTGACGTGAAGTAGATCGAAGAAAA
* * *
7372629 TATTGACGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTTATGTATTGACGTGAAGTAGATCGA
1 TATTGACGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGACGTGAAGTAGATCGA
* * * * * *
7372694 AGATAGCAGATCTTGTCTTTATGTATTGACGTAAAGTAGATCGAAGATAGCAGATCTTGTCTTTA
66 AGAAAACAGATCTTGTCTTCATGTATTGACGTAAAGTAGATCGAAGAAAACAGATCTTGTCTTCA
7372759 TGTATTGACGTGAAGTAGATCGAAGA
131 TGTATTGACGTGAAGTAGATCGAAGA
7372785 TAGCAGATCT
Statistics
Matches: 142, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
159 142 1.00
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.30
Consensus pattern (159 bp):
TATTGACGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGACGTGAAGTAGATCGA
AGAAAACAGATCTTGTCTTCATGTATTGACGTAAAGTAGATCGAAGAAAACAGATCTTGTCTTCA
TGTATTGACGTGAAGTAGATCGAAGAAAA
Found at i:7372781 original size:203 final size:203
Alignment explanation
Indices: 7372426--7372830 Score: 666
Period size: 203 Copynumber: 2.0 Consensus size: 203
7372416 TGTCTTCATG
* *
7372426 TATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
1 TATTGACGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGACGTGAAGTAGATCGA
* *
7372491 AGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCA
66 AGAAAACAGATCTTGTCTTCATGTATTGACGTAAAGTAGATCGAAGAAAACAGATCTTGTCTTCA
*
7372556 TGTATTGGCGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
131 TGTATTGACGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
7372621 GAAGAAAA
196 GAAGAAAA
* * *
7372629 TATTGACGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTTATGTATTGACGTGAAGTAGATCGA
1 TATTGACGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGACGTGAAGTAGATCGA
* * * * * *
7372694 AGATAGCAGATCTTGTCTTTATGTATTGACGTAAAGTAGATCGAAGATAGCAGATCTTGTCTTTA
66 AGAAAACAGATCTTGTCTTCATGTATTGACGTAAAGTAGATCGAAGAAAACAGATCTTGTCTTCA
* *
7372759 TGTATTGACGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
131 TGTATTGACGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
7372824 GAAGAAA
196 GAAGAAA
7372831 GCAGATCTTG
Statistics
Matches: 186, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
203 186 1.00
ACGTcount: A:0.32, C:0.12, G:0.25, T:0.30
Consensus pattern (203 bp):
TATTGACGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGACGTGAAGTAGATCGA
AGAAAACAGATCTTGTCTTCATGTATTGACGTAAAGTAGATCGAAGAAAACAGATCTTGTCTTCA
TGTATTGACGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
GAAGAAAA
Found at i:7372854 original size:44 final size:44
Alignment explanation
Indices: 7372629--7372853 Score: 414
Period size: 44 Copynumber: 5.1 Consensus size: 44
7372619 TCGAAGAAAA
7372629 TATTGACGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTTATG
1 TATTGACGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTTATG
7372673 TATTGACGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTTATG
1 TATTGACGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTTATG
*
7372717 TATTGACGTAAAGTAGATCGAAGATAGCAGATCTTGTCTTTATG
1 TATTGACGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTTATG
*
7372761 TATTGACGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATG
1 TATTGACGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTTATG
* *
7372805 TATTGGCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTTATG
1 TATTGACGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTTATG
7372849 TATTG
1 TATTG
7372854 GGGCAAAGTA
Statistics
Matches: 175, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 175 1.00
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.34
Consensus pattern (44 bp):
TATTGACGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTTATG
Found at i:7372863 original size:44 final size:44
Alignment explanation
Indices: 7372629--7372916 Score: 404
Period size: 44 Copynumber: 6.6 Consensus size: 44
7372619 TCGAAGAAAA
*
7372629 TATTGACGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTTATG
1 TATTGACGTAAAGTAGATCGAAGATAGCAGATCTTGTCTTTATG
*
7372673 TATTGACGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTTATG
1 TATTGACGTAAAGTAGATCGAAGATAGCAGATCTTGTCTTTATG
7372717 TATTGACGTAAAGTAGATCGAAGATAGCAGATCTTGTCTTTATG
1 TATTGACGTAAAGTAGATCGAAGATAGCAGATCTTGTCTTTATG
* *
7372761 TATTGACGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATG
1 TATTGACGTAAAGTAGATCGAAGATAGCAGATCTTGTCTTTATG
* * *
7372805 TATTGGCGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTTATG
1 TATTGACGTAAAGTAGATCGAAGATAGCAGATCTTGTCTTTATG
** * * * *
7372849 TATTGGGGCAAAGTAGAT--AAGAAAGTAGATCTTGTCTTCTCATA
1 TATTGACGTAAAGTAGATCGAAGATAGCAGATCTTGTCTT-T-ATG
*
7372893 TATTGGCG-AAA-TAGATCGAAGATA
1 TATTGACGTAAAGTAGATCGAAGATA
7372917 CAAGTCTTAT
Statistics
Matches: 227, Mismatches: 13, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
42 24 0.11
43 4 0.02
44 199 0.88
ACGTcount: A:0.32, C:0.11, G:0.25, T:0.32
Consensus pattern (44 bp):
TATTGACGTAAAGTAGATCGAAGATAGCAGATCTTGTCTTTATG
Found at i:7374328 original size:24 final size:24
Alignment explanation
Indices: 7374296--7374342 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
7374286 TTCCATTACT
7374296 ATTATTATTA-CATTATTTACTATC
1 ATTATTATTATCA-TATTTACTATC
*
7374320 ATTATTATTATCATATTTTCTAT
1 ATTATTATTATCATATTTACTAT
7374343 ACATATACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 19 0.90
25 2 0.10
ACGTcount: A:0.32, C:0.11, G:0.00, T:0.57
Consensus pattern (24 bp):
ATTATTATTATCATATTTACTATC
Found at i:7374333 original size:12 final size:12
Alignment explanation
Indices: 7374296--7374333 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
7374286 TTCCATTACT
7374296 ATTATTATTA-C
1 ATTATTATTATC
*
7374307 ATTATTTACTATC
1 ATTA-TTATTATC
7374320 ATTATTATTATC
1 ATTATTATTATC
7374332 AT
1 AT
7374334 ATTTTCTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
11 4 0.17
12 14 0.61
13 5 0.22
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.55
Consensus pattern (12 bp):
ATTATTATTATC
Found at i:7375805 original size:16 final size:18
Alignment explanation
Indices: 7375773--7375805 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7375763 ATTAATAGAA
7375773 TGAATTTAGTATTAATTG
1 TGAATTTAGTATTAATTG
7375791 TGAATTT-GT-TTAATT
1 TGAATTTAGTATTAATT
7375806 TTGCGTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 6 0.40
17 2 0.13
18 7 0.47
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (18 bp):
TGAATTTAGTATTAATTG
Found at i:7398643 original size:18 final size:18
Alignment explanation
Indices: 7398620--7398664 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 18
7398610 TAACTTTAAT
*
7398620 ATTGAACACCACTAATAA
1 ATTGAACACCAATAATAA
7398638 ATTGAAACACACCAATAATAA
1 ATTG--A-ACACCAATAATAA
7398659 ATTGAA
1 ATTGAA
7398665 ACTATCTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
18 5 0.22
19 1 0.04
20 1 0.04
21 16 0.70
ACGTcount: A:0.53, C:0.18, G:0.07, T:0.22
Consensus pattern (18 bp):
ATTGAACACCAATAATAA
Found at i:7398651 original size:21 final size:21
Alignment explanation
Indices: 7398625--7398666 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
7398615 TTAATATTGA
*
7398625 ACACCACTAATAAATTGAAAC
1 ACACCAATAATAAATTGAAAC
7398646 ACACCAATAATAAATTGAAAC
1 ACACCAATAATAAATTGAAAC
7398667 TATCTAAATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.55, C:0.21, G:0.05, T:0.19
Consensus pattern (21 bp):
ACACCAATAATAAATTGAAAC
Found at i:7399280 original size:48 final size:49
Alignment explanation
Indices: 7399210--7399306 Score: 126
Period size: 48 Copynumber: 2.0 Consensus size: 49
7399200 AAATGGTGAA
* * * *
7399210 AATGGATAAATGAGAAACATTTGGAAATGATTAAGGTTTTCTCTAAAAT
1 AATGGAGAAATGAGAAACATTTGGAAATGAATAAGATTTTCTCCAAAAT
*
7399259 AATGGAGAAAT-A-AAATCATTTGGAAATGAATATGATTTTCTCCAAAAT
1 AATGGAGAAATGAGAAA-CATTTGGAAATGAATAAGATTTTCTCCAAAAT
7399307 GAAAATGACT
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
47 3 0.07
48 29 0.69
49 10 0.24
ACGTcount: A:0.44, C:0.07, G:0.16, T:0.32
Consensus pattern (49 bp):
AATGGAGAAATGAGAAACATTTGGAAATGAATAAGATTTTCTCCAAAAT
Found at i:7401503 original size:30 final size:30
Alignment explanation
Indices: 7401467--7401526 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
7401457 CCTCTTATTT
7401467 CCCTTAATTGACATATTAAGAACATAAAAC
1 CCCTTAATTGACATATTAAGAACATAAAAC
7401497 CCCTTAATTGACATATTAAGAACATAAAAC
1 CCCTTAATTGACATATTAAGAACATAAAAC
7401527 TTTATATAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.47, C:0.20, G:0.07, T:0.27
Consensus pattern (30 bp):
CCCTTAATTGACATATTAAGAACATAAAAC
Found at i:7402699 original size:14 final size:14
Alignment explanation
Indices: 7402682--7402718 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
7402672 CTTGAATCCC
7402682 TAAACCCTAAACAT
1 TAAACCCTAAACAT
*
7402696 TAAACCTTAAACAT
1 TAAACCCTAAACAT
*
7402710 TAAAACCTA
1 TAAACCCTA
7402719 GACCTAAAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (14 bp):
TAAACCCTAAACAT
Found at i:7408866 original size:40 final size:40
Alignment explanation
Indices: 7408811--7408931 Score: 242
Period size: 40 Copynumber: 3.0 Consensus size: 40
7408801 CATATAAAAG
7408811 TAAAAAATGTGGTCTTCCTCGTTTTGTATGTCGATGATAT
1 TAAAAAATGTGGTCTTCCTCGTTTTGTATGTCGATGATAT
7408851 TAAAAAATGTGGTCTTCCTCGTTTTGTATGTCGATGATAT
1 TAAAAAATGTGGTCTTCCTCGTTTTGTATGTCGATGATAT
7408891 TAAAAAATGTGGTCTTCCTCGTTTTGTATGTCGATGATAT
1 TAAAAAATGTGGTCTTCCTCGTTTTGTATGTCGATGATAT
7408931 T
1 T
7408932 CTACTTATCA
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.43
Consensus pattern (40 bp):
TAAAAAATGTGGTCTTCCTCGTTTTGTATGTCGATGATAT
Found at i:7410365 original size:11 final size:12
Alignment explanation
Indices: 7410349--7410381 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
7410339 GGACCCAAGA
7410349 TGAATTAATTT-
1 TGAATTAATTTG
*
7410360 TGAATTCATTTG
1 TGAATTAATTTG
7410372 TGAATTAATT
1 TGAATTAATT
7410382 AACTTGTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.33, C:0.03, G:0.12, T:0.52
Consensus pattern (12 bp):
TGAATTAATTTG
Found at i:7412922 original size:25 final size:25
Alignment explanation
Indices: 7412880--7413053 Score: 99
Period size: 25 Copynumber: 6.9 Consensus size: 25
7412870 CTTATAATGA
* * *
7412880 GAAGCTCATGTGAACCATTAATCGG
1 GAAGCTCAAGAGAGCCATTAATCGG
7412905 GAAGCTCAAGAGAGCCA-TATATCGG
1 GAAGCTCAAGAGAGCCATTA-ATCGG
* * **
7412930 GTAGCTCCAA-AAAGCCATTAATCAT
1 GAAGCT-CAAGAGAGCCATTAATCGG
* * * *
7412955 AAAGCTCATGAAAGAGCCTTTAATTGG
1 GAAGCTCA--AGAGAGCCATTAATCGG
* *
7412982 GAAGCTC-CGAAGAGCCAATT-ATCTG
1 GAAGCTCAAG-AGAGCC-ATTAATCGG
* *
7413007 GAAGCT-AATATGAGCCATAAAT-GG
1 GAAGCTCAAGA-GAGCCATTAATCGG
*
7413031 GAAGCTTAAGAGAGCCATTAATC
1 GAAGCTCAAGAGAGCCATTAATC
7413054 AGAATGCTCA
Statistics
Matches: 110, Mismatches: 26, Indels: 26
0.68 0.16 0.16
Matches are distributed among these distances:
24 24 0.22
25 62 0.56
26 8 0.07
27 16 0.15
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (25 bp):
GAAGCTCAAGAGAGCCATTAATCGG
Found at i:7419936 original size:41 final size:41
Alignment explanation
Indices: 7419874--7420077 Score: 309
Period size: 41 Copynumber: 5.0 Consensus size: 41
7419864 NNNNNNNNNN
* *
7419874 CTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGAT
1 CTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGAT
* * *
7419915 CTGAATCAGGTTTTAAACCTAGTAGGCTAAGTGCCGATGAT
1 CTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGAT
7419956 CTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGAT
1 CTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGAT
** *
7419997 CTGAATCAGGTTATAAACCTAGCAGGCTAAGTGTTGATGAT
1 CTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGAT
* * *
7420038 TTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGA
1 CTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGA
7420078 NNNNNNNNNN
Statistics
Matches: 146, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 146 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (41 bp):
CTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGAT
Found at i:7420014 original size:82 final size:82
Alignment explanation
Indices: 7419874--7420077 Score: 345
Period size: 82 Copynumber: 2.5 Consensus size: 82
7419864 NNNNNNNNNN
* *
7419874 CTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTTTAAACCTAGTA
1 CTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAACCTAGCA
7419939 GGCTAAGTGCCGATGAT
66 GGCTAAGTGCCGATGAT
* *
7419956 CTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAACCTAGCA
1 CTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAACCTAGCA
**
7420021 GGCTAAGTGTTGATGAT
66 GGCTAAGTGCCGATGAT
*
7420038 TTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGA
1 CTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGA
7420078 NNNNNNNNNN
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
82 113 1.00
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (82 bp):
CTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAACCTAGCA
GGCTAAGTGCCGATGAT
Found at i:7426536 original size:25 final size:25
Alignment explanation
Indices: 7426508--7426576 Score: 90
Period size: 24 Copynumber: 2.8 Consensus size: 25
7426498 ATGCTCATGT
7426508 AAGCATATAATCGGGAAGCTCTTCC
1 AAGCATATAATCGGGAAGCTCTTCC
* *
7426533 AAGCATATAA-CAGGAAGCTCTTGC
1 AAGCATATAATCGGGAAGCTCTTCC
7426557 AAGCCA-AT-ATCGGGAAGCTC
1 AAG-CATATAATCGGGAAGCTC
7426577 CAGAGAGCCA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
23 1 0.03
24 26 0.67
25 12 0.31
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (25 bp):
AAGCATATAATCGGGAAGCTCTTCC
Found at i:7426585 original size:24 final size:24
Alignment explanation
Indices: 7426558--7426652 Score: 75
Period size: 25 Copynumber: 3.8 Consensus size: 24
7426548 AGCTCTTGCA
* *
7426558 AGCCAATATCGGGAAGCTCCAGAG
1 AGCCAATATCAGGAAGCTCAAGAG
* *
7426582 AGCCATTAGTCAGGAAGCTCAAGCG
1 AGCCAATA-TCAGGAAGCTCAAGAG
* *
7426607 AGCCATATATCAAGTAGCTCTAA-AG
1 AGCCA-ATATCAGGAAGCTC-AAGAG
* *
7426632 AGCCATTAATCAAGAAGCTCA
1 AGCCAAT-ATCAGGAAGCTCA
7426653 TGAAAGAGCC
Statistics
Matches: 57, Mismatches: 10, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
24 9 0.16
25 44 0.77
26 4 0.07
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (24 bp):
AGCCAATATCAGGAAGCTCAAGAG
Found at i:7426611 original size:49 final size:50
Alignment explanation
Indices: 7426543--7426652 Score: 123
Period size: 50 Copynumber: 2.2 Consensus size: 50
7426533 AAGCATATAA
** ** * *
7426543 CAGGAAGCTCTTGCAAGCCA-ATATCGGGAAGCTCCAGAGAGCCATTAGT
1 CAGGAAGCTCAAGCAAGCCATATATCAAGAAGCTCCAAAGAGCCATTAAT
* * *
7426592 CAGGAAGCTCAAGCGAGCCATATATCAAGTAGCTCTAAAGAGCCATTAAT
1 CAGGAAGCTCAAGCAAGCCATATATCAAGAAGCTCCAAAGAGCCATTAAT
*
7426642 CAAGAAGCTCA
1 CAGGAAGCTCA
7426653 TGAAAGAGCC
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
49 17 0.34
50 33 0.66
ACGTcount: A:0.35, C:0.24, G:0.23, T:0.18
Consensus pattern (50 bp):
CAGGAAGCTCAAGCAAGCCATATATCAAGAAGCTCCAAAGAGCCATTAAT
Found at i:7426667 original size:27 final size:25
Alignment explanation
Indices: 7426570--7426680 Score: 91
Period size: 25 Copynumber: 4.4 Consensus size: 25
7426560 CCAATATCGG
* * * *
7426570 GAAGCTCCAGAGAGCCATTAGTCAG
1 GAAGCTCTAAAGAGCCATTAATCAA
*
7426595 GAAGCTC-AAGCGAGCCA-TATATCAA
1 GAAGCTCTAA-AGAGCCATTA-ATCAA
*
7426620 GTAGCTCTAAAGAGCCATTAATCAA
1 GAAGCTCTAAAGAGCCATTAATCAA
* **
7426645 GAAGCTCATGAAAGAGCCTTTAATCGG
1 GAAGCTC-T-AAAGAGCCATTAATCAA
7426672 GAAGCTCTA
1 GAAGCTCTA
7426681 GACAACCAAA
Statistics
Matches: 70, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
24 3 0.04
25 40 0.57
26 6 0.09
27 21 0.30
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.20
Consensus pattern (25 bp):
GAAGCTCTAAAGAGCCATTAATCAA
Found at i:7429917 original size:30 final size:30
Alignment explanation
Indices: 7429881--7429940 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
7429871 AAAACATACA
7429881 ATGTTTTTTATCCAAAATTTCAAGAATGAT
1 ATGTTTTTTATCCAAAATTTCAAGAATGAT
7429911 ATGTTTTTTATCCAAAATTTCAAGAATGAT
1 ATGTTTTTTATCCAAAATTTCAAGAATGAT
7429941 CATACAATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.43
Consensus pattern (30 bp):
ATGTTTTTTATCCAAAATTTCAAGAATGAT
Found at i:7433512 original size:118 final size:118
Alignment explanation
Indices: 7433332--7433564 Score: 430
Period size: 118 Copynumber: 2.0 Consensus size: 118
7433322 CCAATCATGG
**
7433332 TACTTATTGTGGACTGACTCCATAATTAAGTAAATTGTGAATTATCGGAATGATGCTTCTGGACA
1 TACTTATTGTGGACTGACTCCATAATTAAGTAAATTGTGAATTATCGGAACAATGCTTCTGGACA
7433397 TAATTGCAATTACTCGAGCCTAATTGTATAAGTTCGATTGGTCTCTTCGCAAT
66 TAATTGCAATTACTCGAGCCTAATTGTATAAGTTCGATTGGTCTCTTCGCAAT
7433450 TACTTATTGTGGACTGACTCCATAATTAAGTAAATTGTGAATTATCGGAACAATGCTTCTGGACA
1 TACTTATTGTGGACTGACTCCATAATTAAGTAAATTGTGAATTATCGGAACAATGCTTCTGGACA
* *
7433515 TAATTGCAATTACTCGAGCCTAATTGTATATGTTCGATTGGTCTTTTCGC
66 TAATTGCAATTACTCGAGCCTAATTGTATAAGTTCGATTGGTCTCTTCGC
7433565 TAGCTCAACA
Statistics
Matches: 111, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
118 111 1.00
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.37
Consensus pattern (118 bp):
TACTTATTGTGGACTGACTCCATAATTAAGTAAATTGTGAATTATCGGAACAATGCTTCTGGACA
TAATTGCAATTACTCGAGCCTAATTGTATAAGTTCGATTGGTCTCTTCGCAAT
Found at i:7434300 original size:31 final size:29
Alignment explanation
Indices: 7434252--7434364 Score: 118
Period size: 31 Copynumber: 3.7 Consensus size: 29
7434242 AAGATAATAT
*
7434252 TATTTTAATGAATTTAATATTTATCTAGATA
1 TATTTT-ATTAATTTAATATTTATCT-GATA
* * *
7434283 GTATTTTATTAATTTAATATTAATATGAGA
1 -TATTTTATTAATTTAATATTTATCTGATA
**
7434313 TATTAAATTAAATTTAATATTTATCTTGATAA
1 TATTTTATT-AATTTAATATTTATC-TGAT-A
7434345 TATTTTATTAATTTAATATT
1 TATTTTATTAATTTAATATT
7434365 GATGTGATTA
Statistics
Matches: 67, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
29 7 0.10
30 16 0.24
31 30 0.45
32 14 0.21
ACGTcount: A:0.40, C:0.02, G:0.05, T:0.53
Consensus pattern (29 bp):
TATTTTATTAATTTAATATTTATCTGATA
Found at i:7434417 original size:89 final size:90
Alignment explanation
Indices: 7434303--7434481 Score: 351
Period size: 89 Copynumber: 2.0 Consensus size: 90
7434293 AATTTAATAT
7434303 TAATATGAGATATTAAATTAAATTTAATATTTATCTTGATAATATTTTATTAATTTAATATTGAT
1 TAATATGAGATATTAAATTAAATTTAATATTTATCTTGATAATATTTTATTAATTTAATATTGAT
7434368 GTGATTAATTCCAAAACTTTTTCTA
66 GTGATTAATTCCAAAACTTTTTCTA
7434393 TAATATGAGA-ATTAAATTAAATTTAATATTTATCTTGATAATATTTTATTAATTTAATATTGAT
1 TAATATGAGATATTAAATTAAATTTAATATTTATCTTGATAATATTTTATTAATTTAATATTGAT
7434457 GTGATTAATTCCAAAACTTTTTCTA
66 GTGATTAATTCCAAAACTTTTTCTA
7434482 CCCCTACCTC
Statistics
Matches: 89, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
89 79 0.89
90 10 0.11
ACGTcount: A:0.39, C:0.06, G:0.07, T:0.49
Consensus pattern (90 bp):
TAATATGAGATATTAAATTAAATTTAATATTTATCTTGATAATATTTTATTAATTTAATATTGAT
GTGATTAATTCCAAAACTTTTTCTA
Found at i:7441212 original size:20 final size:20
Alignment explanation
Indices: 7441187--7441228 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
7441177 AAATAAAAGT
*
7441187 TATTTTTTGGAGTTTACAAG
1 TATTTTTAGGAGTTTACAAG
7441207 TATTTTTAGGAGTTTACAAG
1 TATTTTTAGGAGTTTACAAG
7441227 TA
1 TA
7441229 AAATTATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.05, G:0.19, T:0.48
Consensus pattern (20 bp):
TATTTTTAGGAGTTTACAAG
Found at i:7442464 original size:17 final size:16
Alignment explanation
Indices: 7442437--7442482 Score: 56
Period size: 17 Copynumber: 2.8 Consensus size: 16
7442427 TAATTTTTCG
*
7442437 AAAAATAATTTTACAA
1 AAAAATTATTTTACAA
*
7442453 AAAAATTTATTTGAACAA
1 AAAAA-TTATTT-TACAA
7442471 AAAAATTATTTT
1 AAAAATTATTTT
7442483 TTAAAAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
16 5 0.20
17 11 0.44
18 9 0.36
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (16 bp):
AAAAATTATTTTACAA
Found at i:7442490 original size:18 final size:17
Alignment explanation
Indices: 7442444--7442495 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
7442434 TCGAAAAATA
*
7442444 ATTTTACAAAAAAATTT
1 ATTTTAAAAAAAAATTT
*
7442461 ATTTGAACAAAAAAATTAT
1 ATTTTAA-AAAAAAATT-T
*
7442480 TTTTTAAAAAATAAAT
1 ATTTTAAAAAA-AAAT
7442496 AAAATTTATT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
17 5 0.18
18 13 0.46
19 10 0.36
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.38
Consensus pattern (17 bp):
ATTTTAAAAAAAAATTT
Found at i:7443222 original size:16 final size:16
Alignment explanation
Indices: 7443198--7443235 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
7443188 TTTGGTTCGC
* *
7443198 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
7443214 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
7443230 TGTAAT
1 TGTAAT
7443236 AGCAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Done.