Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 23 of 145
Found at i:7443319 original size:39 final size:43
Alignment explanation
Indices: 7443214--7443323 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
7443204 GGATTAGAGG
7443214 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT--A
* * ***
7443259 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
7443299 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
7443324 TAATGGAAAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 1 0.02
44 11 0.19
45 23 0.40
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (43 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTA
Found at i:7446890 original size:19 final size:19
Alignment explanation
Indices: 7446868--7446906 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
7446858 AATTTTGCGG
7446868 TTTTCAACTTTTTTTTTTC
1 TTTTCAACTTTTTTTTTTC
*
7446887 TTTTCACCTTTTTTTTTTC
1 TTTTCAACTTTTTTTTTTC
7446906 T
1 T
7446907 CGAAAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.08, C:0.18, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTCAACTTTTTTTTTTC
Found at i:7454832 original size:106 final size:106
Alignment explanation
Indices: 7454646--7454856 Score: 278
Period size: 106 Copynumber: 2.0 Consensus size: 106
7454636 AGGAAACCAT
* * * * * *
7454646 ACTTTGAAGTTTTAAGAGGGTATTTGGCTATTTAGTCGAACGAGAAATCAAAACCCAGCACATTA
1 ACTTTGAAATTTTAAAAGGATATTTGGCTATTTAGTCAAACAAGAAATCAAAACCCAACACATTA
* *
7454711 GGGCATGTTTTCTCGAATTTCCAAACGCAAAATATTGCCTC
66 GGGCACGTTTCCTCGAATTTCCAAACGCAAAATATTGCCTC
* * * * *
7454752 ACTTTGAAATTTTAAAAGGATATTTGGCTATTTGGTCAAACAAGGAGTCGAAACCCAACACGTTA
1 ACTTTGAAATTTTAAAAGGATATTTGGCTATTTAGTCAAACAAGAAATCAAAACCCAACACATTA
* * *
7454817 GGGCACGTTTCCTCGATTTTCTAAACGCGAAATATTGCCT
66 GGGCACGTTTCCTCGAATTTCCAAACGCAAAATATTGCCT
7454857 TATTTAGAAA
Statistics
Matches: 89, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
106 89 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (106 bp):
ACTTTGAAATTTTAAAAGGATATTTGGCTATTTAGTCAAACAAGAAATCAAAACCCAACACATTA
GGGCACGTTTCCTCGAATTTCCAAACGCAAAATATTGCCTC
Found at i:7455190 original size:18 final size:18
Alignment explanation
Indices: 7455164--7455233 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 18
7455154 ATATAAATCG
7455164 TAAAGTATAAAAATGTATA
1 TAAA-TATAAAAATGTATA
* *
7455183 TAAATATAAATATATATA
1 TAAATATAAAAATGTATA
* * *
7455201 TTAA-ATAAAAATCTGTA
1 TAAATATAAAAATGTATA
* *
7455218 AAAAAATAAAAATGTA
1 TAAATATAAAAATGTA
7455234 AGTATGTTCA
Statistics
Matches: 40, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
17 12 0.30
18 24 0.60
19 4 0.10
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.31
Consensus pattern (18 bp):
TAAATATAAAAATGTATA
Found at i:7455782 original size:18 final size:18
Alignment explanation
Indices: 7455756--7455804 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
7455746 ATATAAATCG
*
7455756 TAAAGTATAAAAATGTATA
1 TAAA-TATAAAAATATATA
*
7455775 TAAATATAAATATATATA
1 TAAATATAAAAATATATA
*
7455793 TTAA-ATAAAAAT
1 TAAATATAAAAAT
7455805 CTGTAAGTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
17 7 0.27
18 15 0.58
19 4 0.15
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (18 bp):
TAAATATAAAAATATATA
Found at i:7456121 original size:598 final size:592
Alignment explanation
Indices: 7454992--7456182 Score: 2195
Period size: 598 Copynumber: 2.0 Consensus size: 592
7454982 GATTACATAA
7454992 ATAAAGCAAACGAATAAACAAATAGAACTAACATTTTAGAAAAGTAAAAGTGTACATGAATAAAT
1 ATAAAGCAAACGAATAAACAAATAGAACTAACATTTTAGAAAAGTAAAAGTGTACATGAATAAAT
7455057 AAATAAACACCAAAATAACAACGATGACAATAAATACAATTATGTAAAATGTGTATGCATGTATA
66 AAATAAACACCAAAATAACAACGATGACAATAAATACAATTATGTAAAATGTGTATGCATGTATA
7455122 ATTTTAAGTTATGAAAATAAGAAATGATTTATATATAAATCGTAAAGTATAAAAATGTATATAAA
131 ATTTTAAGTTATGAAAATAAGAAATGATTTATATATAAATCGTAAAGTATAAAAATGTATATAAA
7455187 TATAAATATATATATTAAATAAAAATCTGTAAAAAAATAAAAATGTAAGTATGTTCATATGTACA
196 TATAAATATATATATTAAATAAAAATCTGTAAAAAAATAAAAATGTAAGTATGTTCATATGTACA
* ** * *
7455252 TTATAAAATATATATAGGTATACTTATTTTTTTTAGATTATAAGATTATAAAGTATACACAAAAA
261 TTATAAAATATATATAGGTATACTTATTTTTTTTAGATTATAAGAGTATAAACAAAAAACAAAAA
7455317 AGGTATATACATATGTAGGAGTTACAAAATATAAAACACGTGTGTACATATAAAATATATAACAT
326 AGGTATATACATATGTAGGAGTTACAAAATATAAAACACGTGTGTACATATAAAATATATAACAT
*
7455382 ATAATATGTGCGTATGTATATTATAAAAATGTGCATATATATGTATATATGAAAATAAAAGTAAG
391 AAAATATGTGCGTATGTATATTATAAAAATGTGCATATATATGTATATATGAAAATAAAAGTAAG
7455447 CATATAGATTATAGCATATATAAAAATATAAGTATGTATATACATATTGATTGTAAAAGTGTACG
456 CATATAGATTATAGCATATATAAAAATATAAGTATGTATATACATATTGATTGTAAAAGTGTACG
7455512 TATTAAGAATGCATGCATGTACATGTATATGAAAAAAATCTGAAATTTTAAAATATATATATACA
521 TATTAAGAATGCATGCATGTACATGTATATGAAAAAAATCTGAAATTTTAAAATATATATATACA
7455577 TATAAAC
586 TATAAAC
7455584 ATAAAGCAAACGAATAAACAAATAGAACTAACATTTTAGAAAAGTAAAAGTGTACATGAATAAAT
1 ATAAAGCAAACGAATAAACAAATAGAACTAACATTTTAGAAAAGTAAAAGTGTACATGAATAAAT
*
7455649 AAATAAACACCAAAATAACAATGATGACAATAAATACAATTATGTAAAATGTGTATGCATGTATA
66 AAATAAACACCAAAATAACAACGATGACAATAAATACAATTATGTAAAATGTGTATGCATGTATA
*
7455714 ATTTTAAGTTATGAAAATAAGAATTGATTTATATATAAATCGTAAAGTATAAAAATGTATATAAA
131 ATTTTAAGTTATGAAAATAAGAAATGATTTATATATAAATCGTAAAGTATAAAAATGTATATAAA
7455779 TATAAATATATATATTAAATAAAAATCTGTAAGTATTATAAAATAAAAATGTAAGTATGTTCATA
196 TATAAATATATATATTAAATAAAAATCTGT-A--A--A-AAAATAAAAATGTAAGTATGTTCATA
*
7455844 TGTACATTATAAAATATATATAGGTATACTTATTTTTTTTAGATTATAA-AGTATACACAAAAAA
255 TGTACATTATAAAATATATATAGGTATACTTATTTTTTTTAGATTATAAGAGTATAAACAAAAAA
* * * *
7455908 GGAATATATGTATATACATATGTAGGAGTTACAAAATATAAAACACGTGTGTACATATAAAATAT
320 -CAAAAAAGGTATATACATATGTAGGAGTTACAAAATATAAAACACGTGTGTACATATAAAATAT
7455973 ATAACATAAAATATGTGCGTATGTATATTATAAAAATGTGCATATATATGTATATATGAAAATAA
384 ATAACATAAAATATGTGCGTATGTATATTATAAAAATGTGCATATATATGTATATATGAAAATAA
7456038 AAGTAAGCATATAGATTATAGCATATATAAAAATATAAGTATGTATATACATATTGATTGTAAAA
449 AAGTAAGCATATAGATTATAGCATATATAAAAATATAAGTATGTATATACATATTGATTGTAAAA
7456103 GTGTACGTATTAAGAATGCATGCATGTACATGTATATGAAAAAAATCTGAAATTTTAAAATATAT
514 GTGTACGTATTAAGAATGCATGCATGTACATGTATATGAAAAAAATCTGAAATTTTAAAATATAT
7456168 ATATACATATAAAC
579 ATATACATATAAAC
7456182 A
1 A
7456183 AGTAAATATC
Statistics
Matches: 579, Mismatches: 13, Indels: 8
0.96 0.02 0.01
Matches are distributed among these distances:
592 223 0.39
593 1 0.00
595 1 0.00
597 10 0.02
598 344 0.59
ACGTcount: A:0.50, C:0.06, G:0.11, T:0.32
Consensus pattern (592 bp):
ATAAAGCAAACGAATAAACAAATAGAACTAACATTTTAGAAAAGTAAAAGTGTACATGAATAAAT
AAATAAACACCAAAATAACAACGATGACAATAAATACAATTATGTAAAATGTGTATGCATGTATA
ATTTTAAGTTATGAAAATAAGAAATGATTTATATATAAATCGTAAAGTATAAAAATGTATATAAA
TATAAATATATATATTAAATAAAAATCTGTAAAAAAATAAAAATGTAAGTATGTTCATATGTACA
TTATAAAATATATATAGGTATACTTATTTTTTTTAGATTATAAGAGTATAAACAAAAAACAAAAA
AGGTATATACATATGTAGGAGTTACAAAATATAAAACACGTGTGTACATATAAAATATATAACAT
AAAATATGTGCGTATGTATATTATAAAAATGTGCATATATATGTATATATGAAAATAAAAGTAAG
CATATAGATTATAGCATATATAAAAATATAAGTATGTATATACATATTGATTGTAAAAGTGTACG
TATTAAGAATGCATGCATGTACATGTATATGAAAAAAATCTGAAATTTTAAAATATATATATACA
TATAAAC
Found at i:7457843 original size:11 final size:12
Alignment explanation
Indices: 7457817--7457841 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7457807 AATGGAAAAG
7457817 TTAATATTTTTT
1 TTAATATTTTTT
7457829 TTAATATTTTTT
1 TTAATATTTTTT
7457841 T
1 T
7457842 AACTTTGCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTAATATTTTTT
Found at i:7458236 original size:4 final size:4
Alignment explanation
Indices: 7458227--7458268 Score: 75
Period size: 4 Copynumber: 10.5 Consensus size: 4
7458217 AGTTTATCCT
*
7458227 ATAA ATAA ATAA ATAA ATAA ATAA ATAG ATAA ATAA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA AT
7458269 CGTGTAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 36 1.00
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:7458868 original size:25 final size:25
Alignment explanation
Indices: 7458816--7458869 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
7458806 AAGTCTTTTT
* *
7458816 AACTCTTTAGCTTTATTTTTTGGGA
1 AACTCTTTAGCTTTATTGTTTGAGA
*
7458841 AACTCTTTTA-CTTTATTGTTTGATA
1 AACTC-TTTAGCTTTATTGTTTGAGA
7458866 AACT
1 AACT
7458870 ATCCAGTTGG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.24, C:0.13, G:0.11, T:0.52
Consensus pattern (25 bp):
AACTCTTTAGCTTTATTGTTTGAGA
Found at i:7463594 original size:3 final size:3
Alignment explanation
Indices: 7463588--7463625 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
7463578 TTCTAGGTAT
7463588 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7463626 TCTAGTTAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7465917 original size:293 final size:293
Alignment explanation
Indices: 7465388--7466563 Score: 1746
Period size: 293 Copynumber: 4.0 Consensus size: 293
7465378 GTCCGCCAAT
7465388 TTTCAAAACCATGATGTGGGCAAGAACTTAACAAATCTTTGAAACATTACTACTATAAGGAAGAT
1 TTTCAAAACCATGATGTGGGCAAGAACTTAACAAATCTTTGAAACATTACTACTATAAGGAAGAT
7465453 TGGATAATCTGATACATCCCAATATCAAAATTCATGGAAAGGCCCTAGATTGAAGTGGAAGGGGA
66 TGGATAATCTGATACATCCCAATATCAAAATTCATGGAAAGGCCCTAGATTGAAGTGGAAGGGGA
* * * *
7465518 AAAAGGCTATGAAAACAAGGCAAATTATGCAACAACACTCTGATGCTATTTGAAAGAAGAGAGGA
131 AAAAGGCTATGACAACAAGGCAAATTATGCAACAACACTCTAATGCTATTCGAAAGAAGAAAGGA
* * *
7465583 AAACCTTCTAAACAAGTGTAGATAGGGACACAAGTAAGCCAAATAGATTCTATTATAATAGATTA
196 AAACCTTCTAAACAAGTGCAGATAGGGACACAAGCAAGCCAAATAGATTCTATTATAATAGATGA
* *
7465648 TTGAAGTGTAAATTGATGCTAGATTACGTTTAA
261 TTGAAGTGAAAATTGATGCTAGATTACTTTTAA
*
7465681 TTTCAAAACCATGATGTGGGCAAGAACTTAACAAATCTTTGAAACATTATTACTATAAGGAAGAT
1 TTTCAAAACCATGATGTGGGCAAGAACTTAACAAATCTTTGAAACATTACTACTATAAGGAAGAT
* * *
7465746 TGAATAATCTGATACATCCCAATATCAACATTCATGGAAAGGCCCTAGATTGAAGTGGGAGGGGA
66 TGGATAATCTGATACATCCCAATATCAAAATTCATGGAAAGGCCCTAGATTGAAGTGGAAGGGGA
* * ** * *
7465811 AAAAAGCTATGACAACAAGGCAAATTATGCAACAAAACTCTAATATTGTTCGATAGAAGAAAGGA
131 AAAAGGCTATGACAACAAGGCAAATTATGCAACAACACTCTAATGCTATTCGAAAGAAGAAAGGA
* * *
7465876 AAACCTTTTAAACAAGTGTAGATAGGGATACAAGCAAGCCAAATAGATTCTATTATAATAGATGA
196 AAACCTTCTAAACAAGTGCAGATAGGGACACAAGCAAGCCAAATAGATTCTATTATAATAGATGA
*
7465941 TTGAAGTGAAAATTGATGCTA-ACTAACTTTTAA
261 TTGAAGTGAAAATTGATGCTAGA-TTACTTTTAA
** * *
7465974 TTTCAAAAAAATGATGTGGGCAAGAACTTAATAAATCTTTGAAACATTACTGCTATAAGGAAGAT
1 TTTCAAAACCATGATGTGGGCAAGAACTTAACAAATCTTTGAAACATTACTACTATAAGGAAGAT
7466039 TGGATAATCTGATACATCCCAATATCAAAATTCATGGAAAGGCCCTAGATTGAAGTGGAAGGGGA
66 TGGATAATCTGATACATCCCAATATCAAAATTCATGGAAAGGCCCTAGATTGAAGTGGAAGGGGA
* * * * * * *
7466104 AAAAGGTTGTGACGACAAGACAAATTATGCAACAACACTCTGATGCTATTCGAAAGGAG-AGGGA
131 AAAAGGCTATGACAACAAGGCAAATTATGCAACAACACTCTAATGCTATTCGAAAGAAGAAAGG-
* * * * * *
7466168 AAAACCTTCTAAACAAGTGCATATAGAGACATAAGAAAGCCAAACAGATTCTATTATAATATATG
195 AAAACCTTCTAAACAAGTGCAGATAGGGACACAAGCAAGCCAAATAGATTCTATTATAATAGATG
7466233 ATTGAAGT-ACAAATTGATGCTAGATTACTTTTAA
260 ATTGAAGTGA-AAATTGATGCTAGATTACTTTTAA
* * * *
7466267 TTTCAAAACCATGATGTGGGCAAGAACTTAACAAATCTGTGAAACATTACTGCTGTAAGGAATAT
1 TTTCAAAACCATGATGTGGGCAAGAACTTAACAAATCTTTGAAACATTACTACTATAAGGAAGAT
* * * *
7466332 TGGATAATCTGATACATCCCAATATCAATATTCATAGAAAGGCCTTAAATTGAAGTGGAAGGGGA
66 TGGATAATCTGATACATCCCAATATCAAAATTCATGGAAAGGCCCTAGATTGAAGTGGAAGGGGA
* * * * * * *
7466397 AAAAGGTTGTGACAACAAGCCAAATTATGCAACAACACTCTAATGTTGTTCGAAAAAAGATAGGA
131 AAAAGGCTATGACAACAAGGCAAATTATGCAACAACACTCTAATGCTATTCGAAAGAAGAAAGGA
** * * * *
7466462 AAAAATTCTAAACAAGTGCAGATAAGGACACAATCAAGGCAAATAGATTCTATTATAATAGATTA
196 AAACCTTCTAAACAAGTGCAGATAGGGACACAAGCAAGCCAAATAGATTCTATTATAATAGATGA
*
7466527 TTGAAGTGAAAATTGATGCTAGCTTACTTTTAA
261 TTGAAGTGAAAATTGATGCTAGATTACTTTTAA
7466560 TTTC
1 TTTC
7466564 TCCGATAGTA
Statistics
Matches: 793, Mismatches: 84, Indels: 12
0.89 0.09 0.01
Matches are distributed among these distances:
292 5 0.01
293 784 0.99
294 4 0.01
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.26
Consensus pattern (293 bp):
TTTCAAAACCATGATGTGGGCAAGAACTTAACAAATCTTTGAAACATTACTACTATAAGGAAGAT
TGGATAATCTGATACATCCCAATATCAAAATTCATGGAAAGGCCCTAGATTGAAGTGGAAGGGGA
AAAAGGCTATGACAACAAGGCAAATTATGCAACAACACTCTAATGCTATTCGAAAGAAGAAAGGA
AAACCTTCTAAACAAGTGCAGATAGGGACACAAGCAAGCCAAATAGATTCTATTATAATAGATGA
TTGAAGTGAAAATTGATGCTAGATTACTTTTAA
Found at i:7467795 original size:5 final size:5
Alignment explanation
Indices: 7467785--7467821 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
7467775 ATTACTAATC
*
7467785 ATAAA ATAAA ATAAA ATAAA ATAAA CTAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT
7467822 CATCATCTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:7469856 original size:27 final size:26
Alignment explanation
Indices: 7469820--7469931 Score: 81
Period size: 25 Copynumber: 4.4 Consensus size: 26
7469810 GTTAAAGTAC
7469820 ATAATCAGGAAGCCATC-TCTCGAGCCAT
1 ATAA-CAGGAAGCC-TCATCT-GAGCCAT
*
7469848 ATAACAGGAAG-CTCATGTGAGCCAT
1 ATAACAGGAAGCCTCATCTGAGCCAT
* * **
7469873 ATAACAGGAAG-CTAATCTGGGCTGT
1 ATAACAGGAAGCCTCATCTGAGCCAT
* **
7469898 ATAACAGAAAG-CTCATAAGAGCCAT
1 ATAACAGGAAGCCTCATCTGAGCCAT
*
7469923 -TATCAGGAA
1 ATAACAGGAA
7469932 ACTTATGTGA
Statistics
Matches: 68, Mismatches: 15, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
24 7 0.10
25 47 0.69
26 3 0.04
27 7 0.10
28 4 0.06
ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21
Consensus pattern (26 bp):
ATAACAGGAAGCCTCATCTGAGCCAT
Found at i:7469873 original size:25 final size:25
Alignment explanation
Indices: 7469841--7469945 Score: 104
Period size: 25 Copynumber: 4.2 Consensus size: 25
7469831 GCCATCTCTC
7469841 GAGCCATATAACAGGAAGCTCATGT
1 GAGCCATATAACAGGAAGCTCATGT
* *
7469866 GAGCCATATAACAGGAAGCTAATCT
1 GAGCCATATAACAGGAAGCTCATGT
* ** * **
7469891 GGGCTGTATAACAGAAAGCTCATAA
1 GAGCCATATAACAGGAAGCTCATGT
* * *
7469916 GAGCCAT-TATCAGGAAACTTATGT
1 GAGCCATATAACAGGAAGCTCATGT
7469940 GAGCCA
1 GAGCCA
7469946 ACAATAGGTA
Statistics
Matches: 62, Mismatches: 18, Indels: 1
0.77 0.22 0.01
Matches are distributed among these distances:
24 17 0.27
25 45 0.73
ACGTcount: A:0.37, C:0.19, G:0.23, T:0.21
Consensus pattern (25 bp):
GAGCCATATAACAGGAAGCTCATGT
Found at i:7470094 original size:26 final size:26
Alignment explanation
Indices: 7470005--7470101 Score: 87
Period size: 26 Copynumber: 3.8 Consensus size: 26
7469995 AAGTTCAAGC
* *
7470005 GAGCCA-T-ATCGGGAAGCT-TCGGA
1 GAGCCATTAATCGGGAAGCTCACGAA
** *
7470028 GAGCCATTAATCATGAAGCTCACAAA
1 GAGCCATTAATCGGGAAGCTCACGAA
7470054 GAGCC-TTGAATCGGGAAGCTCACGAA
1 GAGCCATT-AATCGGGAAGCTCACGAA
*
7470080 GAGCCATATAA-CGGGACGCTCA
1 GAGCCAT-TAATCGGGAAGCTCA
7470102 TAAGAGCTCA
Statistics
Matches: 59, Mismatches: 9, Indels: 9
0.77 0.12 0.12
Matches are distributed among these distances:
23 6 0.10
24 1 0.02
25 11 0.19
26 37 0.63
27 3 0.05
28 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.27, T:0.16
Consensus pattern (26 bp):
GAGCCATTAATCGGGAAGCTCACGAA
Found at i:7473109 original size:43 final size:45
Alignment explanation
Indices: 7473059--7473166 Score: 166
Period size: 43 Copynumber: 2.4 Consensus size: 45
7473049 CTTCCGAGGT
*
7473059 ATGATTTCATGTAAGACCATGTCTGGGACATTGGCATCG-ATATG
1 ATGATTTCATGTAAGACCATGTCTGAGACATTGGCATCGTATATG
7473103 A-GATTTCATGTAAGACCATGTCTGAGACATTGGCATCGTATATG
1 ATGATTTCATGTAAGACCATGTCTGAGACATTGGCATCGTATATG
* **
7473147 ATTATAACATGTAAGACCAT
1 ATGATTTCATGTAAGACCAT
7473167 ATCTAGGATA
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
43 36 0.62
44 7 0.12
45 15 0.26
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.31
Consensus pattern (45 bp):
ATGATTTCATGTAAGACCATGTCTGAGACATTGGCATCGTATATG
Found at i:7477107 original size:21 final size:21
Alignment explanation
Indices: 7477094--7477137 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 21
7477084 AAAGTCGTTT
7477094 AACAAAAAAAAAAATCTATTCA
1 AACAAAAAAAAAAATCTATT-A
7477116 AACAAAAAAAAAACAATCTATT
1 AAC-AAAAAAAAA-AATCTATT
7477138 CAAGTATCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 3 0.15
23 9 0.45
24 8 0.40
ACGTcount: A:0.68, C:0.14, G:0.00, T:0.18
Consensus pattern (21 bp):
AACAAAAAAAAAAATCTATTA
Found at i:7478622 original size:22 final size:22
Alignment explanation
Indices: 7478582--7478623 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7478572 TATTATTATT
*
7478582 TAGATTTAAAAATACTTACTTA
1 TAGATTTAAAAAGACTTACTTA
7478604 TAGATTTAAATAAGA-TTACT
1 TAGATTTAAA-AAGACTTACT
7478624 AATTACTATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (22 bp):
TAGATTTAAAAAGACTTACTTA
Found at i:7479171 original size:29 final size:30
Alignment explanation
Indices: 7479125--7479188 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 30
7479115 AGATAAAATG
7479125 TCATGTATAAAATCGCACA-AGATCAAAGT
1 TCATGTATAAAATCGCACATAGATCAAAGT
* * *
7479154 TCATGTATGACATTGCACATTAGATCAAAGT
1 TCATGTATAAAATCGCACA-TAGATCAAAGT
7479185 TCAT
1 TCAT
7479189 TTCTAATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 16 0.53
31 14 0.47
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (30 bp):
TCATGTATAAAATCGCACATAGATCAAAGT
Found at i:7480228 original size:2 final size:2
Alignment explanation
Indices: 7480221--7480248 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
7480211 AGATACTGTC
7480221 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7480249 TAATTCATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7491153 original size:9 final size:9
Alignment explanation
Indices: 7491139--7491169 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
7491129 TCGAGTTGAT
7491139 TCGAATAAC
1 TCGAATAAC
7491148 TCGAATAAC
1 TCGAATAAC
7491157 TCGAATAAC
1 TCGAATAAC
7491166 TCGA
1 TCGA
7491170 TTCGTTTAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.42, C:0.23, G:0.13, T:0.23
Consensus pattern (9 bp):
TCGAATAAC
Found at i:7498313 original size:76 final size:76
Alignment explanation
Indices: 7498180--7498337 Score: 244
Period size: 76 Copynumber: 2.1 Consensus size: 76
7498170 TTACACGCCT
* * *
7498180 GTGTATTAGGCCGTGTAACTCACTAAATTGCACCCTAAATAATTCATCAAATGACACACAACCGT
1 GTGTGTTAGGCCGTGTAACTCACTAAATTGCACCCTAAATAATTCATCAAATAACACACAACCAT
***
7498245 GTTGTCAGGCC
66 GTCACCAGGCC
* *
7498256 GTGTGTTAGGCCGTGTAACTCACTGACTTGCACCCTAAATAATTCATCAAATAACACACAACCAT
1 GTGTGTTAGGCCGTGTAACTCACTAAATTGCACCCTAAATAATTCATCAAATAACACACAACCAT
7498321 GTCACCAGGCC
66 GTCACCAGGCC
7498332 GTGTGT
1 GTGTGT
7498338 CTCACACAAC
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
76 74 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (76 bp):
GTGTGTTAGGCCGTGTAACTCACTAAATTGCACCCTAAATAATTCATCAAATAACACACAACCAT
GTCACCAGGCC
Found at i:7502310 original size:4 final size:4
Alignment explanation
Indices: 7502301--7502363 Score: 51
Period size: 4 Copynumber: 15.8 Consensus size: 4
7502291 GAAGAGATAA
* *
7502301 AAAT AAAT AAAT ACCAA- AAAG AAAT AAAT AAAT -AA- AAAT AAAC AAAT
1 AAAT AAAT AAAT A--AAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
*
7502348 AAAAT AAAT CAAT AAA
1 -AAAT AAAT AAAT AAA
7502364 CCAATCAGGA
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
3 6 0.12
4 35 0.73
5 5 0.10
6 2 0.04
ACGTcount: A:0.75, C:0.06, G:0.02, T:0.17
Consensus pattern (4 bp):
AAAT
Found at i:7502341 original size:14 final size:14
Alignment explanation
Indices: 7502322--7502363 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
7502312 TACCAAAAAG
7502322 AAATAAATAAATAA
1 AAATAAATAAATAA
*
7502336 AAATAAACAAAT-A
1 AAATAAATAAATAA
*
7502349 AAATAAATCAATAA
1 AAATAAATAAATAA
7502363 A
1 A
7502364 CCAATCAGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.19
Consensus pattern (14 bp):
AAATAAATAAATAA
Found at i:7506244 original size:24 final size:25
Alignment explanation
Indices: 7506206--7506255 Score: 93
Period size: 24 Copynumber: 2.0 Consensus size: 25
7506196 TGATTTTTCA
7506206 TTAAAAATGGCTAATTTGCATGTTT
1 TTAAAAATGGCTAATTTGCATGTTT
7506231 TTAAAAATGG-TAATTTGCATGTTT
1 TTAAAAATGGCTAATTTGCATGTTT
7506255 T
1 T
7506256 AGGTTCAGGG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 15 0.60
25 10 0.40
ACGTcount: A:0.32, C:0.06, G:0.16, T:0.46
Consensus pattern (25 bp):
TTAAAAATGGCTAATTTGCATGTTT
Found at i:7512534 original size:81 final size:81
Alignment explanation
Indices: 7512399--7512563 Score: 267
Period size: 81 Copynumber: 2.0 Consensus size: 81
7512389 AATCCTCCGT
* * *
7512399 TAATCACATTCTCATCCACTTGTTAATCTCCCCCAAGGGATTTAGTCACTCATGTTATTCATAAT
1 TAATCACATTCCCATCCACTTGTTAATCTCCCCCAAGGGACTTAGTCACTCATGTTATTCATAAC
* *
7512464 CTTTATCATGATTGAA
66 CTTTATCACGACTGAA
* *
7512480 TAATCACATTCCCATCCACTTGTTAATCTCCCGCAAGGGACTTGGTCACTCATGTTATTCATAAC
1 TAATCACATTCCCATCCACTTGTTAATCTCCCCCAAGGGACTTAGTCACTCATGTTATTCATAAC
7512545 CTTTATCACGACTGAA
66 CTTTATCACGACTGAA
7512561 TAA
1 TAA
7512564 ATCATGTGAA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.35
Consensus pattern (81 bp):
TAATCACATTCCCATCCACTTGTTAATCTCCCCCAAGGGACTTAGTCACTCATGTTATTCATAAC
CTTTATCACGACTGAA
Found at i:7515528 original size:12 final size:12
Alignment explanation
Indices: 7515500--7515606 Score: 59
Period size: 12 Copynumber: 9.2 Consensus size: 12
7515490 AAAATATTAC
7515500 TAATTTAATAGTT
1 TAATTTAATA-TT
7515513 TAATATTAA-ATT
1 TAAT-TTAATATT
7515525 TAATTTAATATT
1 TAATTTAATATT
*
7515537 T-ATCTTAATA-G
1 TAAT-TTAATATT
7515548 T-ATTT--TA-T
1 TAATTTAATATT
7515556 TAATTTAATATT
1 TAATTTAATATT
* * * *
7515568 AAAGTGATTATCT
1 TAATTTAATAT-T
*
7515581 TAATAATAA-ATT
1 TAAT-TTAATATT
7515593 TAATTTAATATT
1 TAATTTAATATT
7515605 TA
1 TA
7515607 TCTTGTAGAT
Statistics
Matches: 72, Mismatches: 12, Indels: 21
0.69 0.11 0.20
Matches are distributed among these distances:
8 3 0.04
9 4 0.06
10 2 0.03
11 14 0.19
12 34 0.47
13 10 0.14
14 5 0.07
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (12 bp):
TAATTTAATATT
Found at i:7515546 original size:37 final size:37
Alignment explanation
Indices: 7515504--7515610 Score: 95
Period size: 37 Copynumber: 3.1 Consensus size: 37
7515494 TATTACTAAT
7515504 TTAATAGTTTAATATTAAATTTAATTTAATATTTATC
1 TTAATAGTTTAATATTAAATTTAATTTAATATTTATC
* * *
7515541 TTAATAGTATT-TTATT-AATTTAATATTAA-AGTGA--
1 TTAATAGT-TTAATATTAAATTTAAT-TTAATATTTATC
* *
7515575 TT-AT--CTTAATAATAAATTTAATTTAATATTTATC
1 TTAATAGTTTAATATTAAATTTAATTTAATATTTATC
7515609 TT
1 TT
7515611 GTAGATAAAC
Statistics
Matches: 55, Mismatches: 8, Indels: 17
0.69 0.10 0.21
Matches are distributed among these distances:
30 2 0.04
31 7 0.13
32 11 0.20
33 2 0.04
34 4 0.07
36 11 0.20
37 16 0.29
38 2 0.04
ACGTcount: A:0.40, C:0.03, G:0.04, T:0.53
Consensus pattern (37 bp):
TTAATAGTTTAATATTAAATTTAATTTAATATTTATC
Found at i:7517379 original size:578 final size:578
Alignment explanation
Indices: 7516285--7518009 Score: 3015
Period size: 579 Copynumber: 3.0 Consensus size: 578
7516275 GGCTTGAAGA
*
7516285 GGTATAATCCATGACACATCTCAACACTACCAATCTTCCTCTTCGAAACCAATTCCTGAAAAACA
1 GGTATAATCCATGACACATCTCAACACTACCAATCTTCCTCTTCGAACCCAATTCCTGAAAAACA
*
7516350 CACACATTTGGAAAGAATGTTGTTAAACAATGGTTATCACGAGTTAATTTACATATGGAAATCAT
66 CACACATTTGGAAAGAATGTTGTTAAACAATGGTTATCACGAGTTAATTTACAGATGGAAATCAT
*
7516415 ATTACAATCAAGATTAGGAGCATAAAACACAGATTTAAGAATGATTCCAGGTGATATTTGAATTG
131 ATTACAATCAAGATTAGGAACATAAAACACAGATTTAAGAATGATTCCAGGTGATATTTGAATTG
*
7516480 ATCTGGTCTCATCACTTTAGATAAAGTGCATTAGC-A-CTTAACCTTGAGATTAGAGTGACACAG
196 ATCTGGTCTCATCACTTTAGATAAAGTGCATTAGCAATCTTAACCTTGAGATTAAAGTGACACAG
*
7516543 TTGATAGTCAACGAAAAGTGTCCCATCTCCTGTCATATGATCCAATGTTCATGAGTTAACGATCA
261 TTGATAGTCAACGAAAAGTGTCCCATCTCCTGTCATATGATCCAATGTTCATGAGTCAACGATCA
* * ** *
7516608 ACTGTTTTTATTGTAATTTACCTAACTTAACATGTAAACTTATGGCTAGTGTAGCAATAGAATGT
326 ACTATTTTTATTGTAATTTACCTAACTTAACATGTAAACTTATGGCTGGTGTAGCGGTAGAGTGT
* *
7516673 TGTGTTATAGTGTTGTTCAGCAACAATTTTAGCATATCTAGCTGTTACTTGGTGAAGGGGTTGGA
391 TGTGTTATAGTGTTGTTCAGCAACAATTTTAGCATATCTAGTTGTTCCTTGGTGAAGGGGTTGGA
* *
7516738 TTCAGTTGTGCACTATCGTTCCCCCGTTACATTAGTTGAGTTTGCATTGCTATCTTGGGTTGATC
456 TTCAGTTGTGCACTATCGTTCCCCCGTGACATTGGTTGAGTTTGCATTGCTATCTTGGGTTGATC
7516803 TGTTTGACTTCCAATCCACCAATTTTTGTGTAGCTTCCAACATGTCTCCAATTTTTTG
521 TGTTTGACTTCCAATCCACCAATTTTTGTGTAGCTTCCAACATGTCTCCAATTTTTTG
7516861 GGTATAATCCATGACACATCTCAACACTACCAATCTTCCTCTTCGAACCCAATTCCTGAAAAACA
1 GGTATAATCCATGACACATCTCAACACTACCAATCTTCCTCTTCGAACCCAATTCCTGAAAAACA
* *
7516926 CACACATTTGGAAAGAATGTTGTTAAAAAATGGCTATCACGAGTTAATTTACAGATGGAAATCAT
66 CACACATTTGGAAAGAATGTTGTTAAACAATGGTTATCACGAGTTAATTTACAGATGGAAATCAT
7516991 ATTACAATCAAGATTAGGAACATAAAACACAGATTTAAGAATGATTCCAGGTGATATTTGAATTG
131 ATTACAATCAAGATTAGGAACATAAAACACAGATTTAAGAATGATTCCAGGTGATATTTGAATTG
*
7517056 ATCTGGTCTTATCACTTTAGATAAAGTGCATTAGCAATCTTAACCTTGAGATTAAAGTGACACAG
196 ATCTGGTCTCATCACTTTAGATAAAGTGCATTAGCAATCTTAACCTTGAGATTAAAGTGACACAG
* * *
7517121 TTGATAGTCAACGAAAAGTGTCACATCTCTTGTCATATGATCCAATGTTCGTGAGTCAACGATCA
261 TTGATAGTCAACGAAAAGTGTCCCATCTCCTGTCATATGATCCAATGTTCATGAGTCAACGATCA
*
7517186 ACTATTTTTATTGTAATTTAACTAACTTAACATGTAAACTTATGGCTGGTGTAGCGGTAGAGTGT
326 ACTATTTTTATTGTAATTTACCTAACTTAACATGTAAACTTATGGCTGGTGTAGCGGTAGAGTGT
* * *
7517251 TGTGTTATAGTGTTGTTTAGAAACAATTTTAGCATATCTAGTTGTTCCTTAGTGAAGGGGTTGGA
391 TGTGTTATAGTGTTGTTCAGCAACAATTTTAGCATATCTAGTTGTTCCTTGGTGAAGGGGTTGGA
* * * *
7517316 TTCAGTTGTGCATTATCGTTCCCTCGTGATATTGGTTGAGTTTGCATTGCTATCTTCGGTTGATC
456 TTCAGTTGTGCACTATCGTTCCCCCGTGACATTGGTTGAGTTTGCATTGCTATCTTGGGTTGATC
***
7517381 TGTTTGACTTCCAATATGCCAATTTTT-TGCATAGCTTCCAACATGTCTCCAATTTTTTG
521 TGTTTGACTTCCAATCCACCAATTTTTGTG--TAGCTTCCAACATGTCTCCAATTTTTTG
*
7517440 GGTATAATCCATGACACATCTCAACACTACCAATCTTCCTCTTCGAACCCAATTCCAGAAAAACA
1 GGTATAATCCATGACACATCTCAACACTACCAATCTTCCTCTTCGAACCCAATTCCTGAAAAACA
* * *
7517505 CACACATTTGGAAAGAATTTTGCTAAACAATGGTTATCACGAGTTGATTTACAGATGGAAATCAT
66 CACACATTTGGAAAGAATGTTGTTAAACAATGGTTATCACGAGTTAATTTACAGATGGAAATCAT
* *
7517570 ATTACAATCAAGATTAGGAACATAAAACACAGATTTAAGAATGACTCCAGGTGATATTTGAACTG
131 ATTACAATCAAGATTAGGAACATAAAACACAGATTTAAGAATGATTCCAGGTGATATTTGAATTG
7517635 ATCTGGTCTCATCACTTTAGATAAAGTGCATTAGCAATCTTAACCTTGAGATTAAAGTGACACAG
196 ATCTGGTCTCATCACTTTAGATAAAGTGCATTAGCAATCTTAACCTTGAGATTAAAGTGACACAG
*
7517700 TTGATAGTCAACGAAAAGTGTCCCATTTCCTGTCATATGATCCAATGTTCATGAGTCAACGATCA
261 TTGATAGTCAACGAAAAGTGTCCCATCTCCTGTCATATGATCCAATGTTCATGAGTCAACGATCA
*
7517765 ACTATTTTTATTGTAATTTACCTAACTTAACATGTAAACTTATGGCTGGTGTAGCGGTAAAGTGT
326 ACTATTTTTATTGTAATTTACCTAACTTAACATGTAAACTTATGGCTGGTGTAGCGGTAGAGTGT
*
7517830 TGTGTTATAGTGTTGTTCAGCAACAATTTTAGCATATCTAGTTGTTCCTTGGTGAAGAGGTTGGA
391 TGTGTTATAGTGTTGTTCAGCAACAATTTTAGCATATCTAGTTGTTCCTTGGTGAAGGGGTTGGA
7517895 TTCAGTTGTGCACTATCGTTCCCCCGTGACATTGGTTGAGTTTGCATTGCTATCTTGGGTTGATC
456 TTCAGTTGTGCACTATCGTTCCCCCGTGACATTGGTTGAGTTTGCATTGCTATCTTGGGTTGATC
** *
7517960 TACTTGACTTTCAATCCACCAATTTTTTGTGTAGCTTCCAACATGTCTCC
521 TGTTTGACTTCCAATCCACCAA-TTTTTGTGTAGCTTCCAACATGTCTCC
7518010 CTTATATGAT
Statistics
Matches: 1083, Mismatches: 60, Indels: 9
0.94 0.05 0.01
Matches are distributed among these distances:
576 224 0.21
577 3 0.00
578 289 0.27
579 560 0.52
580 5 0.00
581 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (578 bp):
GGTATAATCCATGACACATCTCAACACTACCAATCTTCCTCTTCGAACCCAATTCCTGAAAAACA
CACACATTTGGAAAGAATGTTGTTAAACAATGGTTATCACGAGTTAATTTACAGATGGAAATCAT
ATTACAATCAAGATTAGGAACATAAAACACAGATTTAAGAATGATTCCAGGTGATATTTGAATTG
ATCTGGTCTCATCACTTTAGATAAAGTGCATTAGCAATCTTAACCTTGAGATTAAAGTGACACAG
TTGATAGTCAACGAAAAGTGTCCCATCTCCTGTCATATGATCCAATGTTCATGAGTCAACGATCA
ACTATTTTTATTGTAATTTACCTAACTTAACATGTAAACTTATGGCTGGTGTAGCGGTAGAGTGT
TGTGTTATAGTGTTGTTCAGCAACAATTTTAGCATATCTAGTTGTTCCTTGGTGAAGGGGTTGGA
TTCAGTTGTGCACTATCGTTCCCCCGTGACATTGGTTGAGTTTGCATTGCTATCTTGGGTTGATC
TGTTTGACTTCCAATCCACCAATTTTTGTGTAGCTTCCAACATGTCTCCAATTTTTTG
Found at i:7526900 original size:11 final size:11
Alignment explanation
Indices: 7526886--7526912 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
7526876 ACTCTCCTTT
7526886 TTTTATTAAAA
1 TTTTATTAAAA
7526897 TTTTATTAAAA
1 TTTTATTAAAA
7526908 TTTTA
1 TTTTA
7526913 AAAAATTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTATTAAAA
Found at i:7529399 original size:19 final size:20
Alignment explanation
Indices: 7529369--7529407 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
7529359 AAATAGATTG
7529369 CGGTTAAAAAATCAATAAAT
1 CGGTTAAAAAATCAATAAAT
*
7529389 CGGTT-AAAAATTAATAAAT
1 CGGTTAAAAAATCAATAAAT
7529408 TTATTAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.54, C:0.08, G:0.10, T:0.28
Consensus pattern (20 bp):
CGGTTAAAAAATCAATAAAT
Found at i:7532836 original size:21 final size:21
Alignment explanation
Indices: 7532810--7532858 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
7532800 CTTTGCCGAC
7532810 CAGGCACCTCGTGTGTCGTAT
1 CAGGCACCTCGTGTGTCGTAT
* *
7532831 CAGGCACCTTGTGTGTCGTTT
1 CAGGCACCTCGTGTGTCGTAT
*
7532852 TAGGCAC
1 CAGGCAC
7532859 TTATGTATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.14, C:0.27, G:0.29, T:0.31
Consensus pattern (21 bp):
CAGGCACCTCGTGTGTCGTAT
Found at i:7534059 original size:22 final size:22
Alignment explanation
Indices: 7534031--7534079 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
7534021 TGAAGAAATT
*
7534031 TGAAAGTTCGAGAATAATGCAC
1 TGAAAGTTCAAGAATAATGCAC
7534053 TGAAAGTTCAAGAATAATGCAC
1 TGAAAGTTCAAGAATAATGCAC
7534075 TGAAA
1 TGAAA
7534080 AATCTAATCG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.22
Consensus pattern (22 bp):
TGAAAGTTCAAGAATAATGCAC
Found at i:7534319 original size:18 final size:19
Alignment explanation
Indices: 7534293--7534329 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
7534283 ACATCTCAAA
*
7534293 AAATTATAAA-AAAAAACT
1 AAATAATAAATAAAAAACT
7534311 AAATAATAAATAAAAAACT
1 AAATAATAAATAAAAAACT
7534330 TAAAGTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 9 0.53
19 8 0.47
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (19 bp):
AAATAATAAATAAAAAACT
Found at i:7534546 original size:33 final size:33
Alignment explanation
Indices: 7534503--7534572 Score: 131
Period size: 33 Copynumber: 2.1 Consensus size: 33
7534493 AAAGCGCTTT
*
7534503 CAACTGGAAACGTTTTGCTATCAATAACTCTTC
1 CAACTAGAAACGTTTTGCTATCAATAACTCTTC
7534536 CAACTAGAAACGTTTTGCTATCAATAACTCTTC
1 CAACTAGAAACGTTTTGCTATCAATAACTCTTC
7534569 CAAC
1 CAAC
7534573 AAAAAAAAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.33, C:0.26, G:0.10, T:0.31
Consensus pattern (33 bp):
CAACTAGAAACGTTTTGCTATCAATAACTCTTC
Found at i:7537067 original size:15 final size:16
Alignment explanation
Indices: 7537041--7537073 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
7537031 ATTTGGACCC
7537041 TATTTTTCTATTTGTT
1 TATTTTTCTATTTGTT
7537057 TATTTTT-TATTTGTT
1 TATTTTTCTATTTGTT
7537072 TA
1 TA
7537074 CTAAGAGCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.15, C:0.03, G:0.06, T:0.76
Consensus pattern (16 bp):
TATTTTTCTATTTGTT
Found at i:7537324 original size:44 final size:44
Alignment explanation
Indices: 7537266--7537533 Score: 187
Period size: 44 Copynumber: 6.2 Consensus size: 44
7537256 GAATTTGGTA
** * *
7537266 CTTTAATCCACTCCACTGCAACTTCAGGGTGATAGGATTATCGG
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCGG
* *
7537310 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAAATT-T-GC
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCGG
* * **
7537352 CATCTTCAGTCTGC-CTCACTGCAACTTCA-GGAGGATAAGACTT-GCTT
1 C-T-TT-AATCTGCTC-CACTGCAACTTCAGGGA-GATAAGA-TTATCGG
* ** *
7537399 ATTTGGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA---G
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCGG
* *** * * *
7537440 ATGCGATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTA-AGG
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATCGG
* * *
7537483 TTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGG
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCGG
7537527 CTTTAAT
1 CTTTAAT
7537534 GTACTTCACT
Statistics
Matches: 178, Mismatches: 31, Indels: 30
0.74 0.13 0.13
Matches are distributed among these distances:
40 22 0.12
41 11 0.06
42 2 0.01
43 13 0.07
44 96 0.54
45 31 0.17
46 3 0.02
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (44 bp):
CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATCGG
Found at i:7537380 original size:45 final size:44
Alignment explanation
Indices: 7537311--7537433 Score: 144
Period size: 45 Copynumber: 2.8 Consensus size: 44
7537301 GATTATCGGC
* *
7537311 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAAATTTGC-CA
1 TTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTTGCTCA
* *
7537354 TCTTCAGTCTGC-CTCACTGCAACTTCA-GGAGGATAAGACTTGCTTA
1 T-TT-AGTCTGCTC-CACTGCAACTTCAGGGA-GATAAAACTTGCTCA
*
7537400 TTTGGTCTGCTCCACTGCAACTTCAGGGAGATAA
1 TTTAGTCTGCTCCACTGCAACTTCAGGGAGATAA
7537434 GACTAGATGC
Statistics
Matches: 68, Mismatches: 5, Indels: 13
0.79 0.06 0.15
Matches are distributed among these distances:
43 1 0.01
44 30 0.44
45 35 0.51
46 2 0.03
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (44 bp):
TTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAAACTTGCTCA
Found at i:7537744 original size:45 final size:44
Alignment explanation
Indices: 7537702--7537839 Score: 122
Period size: 45 Copynumber: 3.1 Consensus size: 44
7537692 AAAATCTGTC
7537702 ATCTTCGATCTGCTCCACTGTCAATACAGGAAGGCAAGATCTGCT
1 ATCTTCGATCTGCTCCACTGTCAAT-CAGGAAGGCAAGATCTGCT
** * * * * *
7537747 ATCTTTAACCTGCTCCACT-ACAACTGAGGAAGGCAAGGCTTTG-T
1 ATCTTCGATCTGCTCCACTGTCAA-TCAGGAAGGCAA-GATCTGCT
* * *
7537791 -T-TTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCT
1 ATCTTCGATCTGCTCCACTGTCAAT-CAGGAAGGCAAGATCTGCT
7537834 ATCTTC
1 ATCTTC
7537840 ACTGATCTGT
Statistics
Matches: 69, Mismatches: 17, Indels: 14
0.69 0.17 0.14
Matches are distributed among these distances:
42 16 0.23
43 14 0.20
44 15 0.22
45 24 0.35
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (44 bp):
ATCTTCGATCTGCTCCACTGTCAATCAGGAAGGCAAGATCTGCT
Found at i:7538971 original size:25 final size:25
Alignment explanation
Indices: 7538939--7538991 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
7538929 CACAGCATGC
*
7538939 CCCATTCTAATCAACATTTGAGCTG
1 CCCATTCTAATCAACATTTGAGCCG
* *
7538964 CCCATTCTGATCAATATTTGAGCCG
1 CCCATTCTAATCAACATTTGAGCCG
7538989 CCC
1 CCC
7538992 TTTTCGGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (25 bp):
CCCATTCTAATCAACATTTGAGCCG
Found at i:7539099 original size:22 final size:21
Alignment explanation
Indices: 7539051--7539100 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
7539041 TTAGCCTCTC
7539051 CATTTT-ACTTTTCCATTTTT
1 CATTTTCACTTTTCCATTTTT
* *
7539071 TATTTTTCACTTTTTCATTTTGT
1 CA-TTTTCACTTTTCCATTTT-T
7539094 CATTTTC
1 CATTTTC
7539101 TTTTTCTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
20 1 0.04
21 4 0.17
22 17 0.71
23 2 0.08
ACGTcount: A:0.14, C:0.18, G:0.02, T:0.66
Consensus pattern (21 bp):
CATTTTCACTTTTCCATTTTT
Found at i:7540320 original size:25 final size:25
Alignment explanation
Indices: 7540266--7540331 Score: 62
Period size: 25 Copynumber: 2.6 Consensus size: 25
7540256 AAGAAAATCC
* **
7540266 AAAAGAATGAAAGAATAATTACTTG
1 AAAATAATGAAAGAATAATTACTCA
*
7540291 CAAATAATGAAAGAAT-ATTGACTCA
1 AAAATAATGAAAGAATAATT-ACTCA
7540316 AAAATAAATGCAAAGA
1 AAAAT-AATG-AAAGA
7540332 TGTATGCAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
24 3 0.09
25 21 0.64
26 4 0.12
27 5 0.15
ACGTcount: A:0.58, C:0.08, G:0.14, T:0.21
Consensus pattern (25 bp):
AAAATAATGAAAGAATAATTACTCA
Found at i:7545540 original size:20 final size:20
Alignment explanation
Indices: 7545512--7545560 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
7545502 GCATATATAT
*
7545512 ATATATATAGAAATTATAAA
1 ATATATATAGAAAGTATAAA
* *
7545532 ATATGTATAGAAAGTATAAT
1 ATATATATAGAAAGTATAAA
7545552 ATATATATA
1 ATATATATA
7545561 TGTACATATA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (20 bp):
ATATATATAGAAAGTATAAA
Found at i:7546899 original size:15 final size:16
Alignment explanation
Indices: 7546873--7546905 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
7546863 ATTTGGACCC
7546873 TATTTTTCTATTTGTT
1 TATTTTTCTATTTGTT
7546889 TATTTTT-TATTTGTT
1 TATTTTTCTATTTGTT
7546904 TA
1 TA
7546906 CTAAGAGCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.15, C:0.03, G:0.06, T:0.76
Consensus pattern (16 bp):
TATTTTTCTATTTGTT
Found at i:7549871 original size:9 final size:9
Alignment explanation
Indices: 7549812--7549870 Score: 91
Period size: 9 Copynumber: 6.6 Consensus size: 9
7549802 TTTGGTTAAA
7549812 AATTAACCG
1 AATTAACCG
*
7549821 AATTAACTG
1 AATTAACCG
7549830 AATTAACCG
1 AATTAACCG
*
7549839 AATTACCCG
1 AATTAACCG
7549848 AATTAACCG
1 AATTAACCG
*
7549857 AATTACCCG
1 AATTAACCG
7549866 AATTA
1 AATTA
7549871 CTTCTCAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 45 1.00
ACGTcount: A:0.42, C:0.22, G:0.10, T:0.25
Consensus pattern (9 bp):
AATTAACCG
Found at i:7550911 original size:57 final size:57
Alignment explanation
Indices: 7550756--7551039 Score: 272
Period size: 57 Copynumber: 5.1 Consensus size: 57
7550746 ATAACATAAT
* * * * * * * *
7550756 AATGCTTACTTTGAGACACTGAAGCAACAA-TTTAATTTAATTTAGGACAGCGT-AA
1 AATGCTCAATTTGAAACACTAAAACAACAACTTTAATTCAATTTAAGACAGCATGAA
* * * * * * * *
7550811 TAATACTCAATTTGAAA-AATTAAATAGCAGC-TTAATTTAATTTAAGACCGCATGAA
1 -AATGCTCAATTTGAAACACTAAAACAACAACTTTAATTCAATTTAAGACAGCATGAA
* * * *
7550867 AATGCTCAATTTGATACACTAAAACACCAACTTTAATTCAATTTATGACAACATGAA
1 AATGCTCAATTTGAAACACTAAAACAACAACTTTAATTCAATTTAAGACAGCATGAA
* * * * *
7550924 AATGCTCAATTTGAAACACTAAAACAGCAGC-TTGATTCAATTTAAGACAGTATGCA
1 AATGCTCAATTTGAAACACTAAAACAACAACTTTAATTCAATTTAAGACAGCATGAA
* * *
7550980 AATGCTCAATTTGAAACACTCAAACAACAACTTTAATTCAATTTATGACAGCATGCA
1 AATGCTCAATTTGAAACACTAAAACAACAACTTTAATTCAATTTAAGACAGCATGAA
7551037 AAT
1 AAT
7551040 AGTAACAATA
Statistics
Matches: 185, Mismatches: 38, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
55 40 0.22
56 71 0.38
57 74 0.40
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.30
Consensus pattern (57 bp):
AATGCTCAATTTGAAACACTAAAACAACAACTTTAATTCAATTTAAGACAGCATGAA
Found at i:7550985 original size:113 final size:112
Alignment explanation
Indices: 7550756--7551039 Score: 329
Period size: 113 Copynumber: 2.5 Consensus size: 112
7550746 ATAACATAAT
* * * * * * * * * *
7550756 AATGCTTACTTTGAGACACTGAAGCAACAA-TTTAATTTAATTTAGGACAGCGT-AATAATACTC
1 AATGCTCAATTTGAAACACTAAAACAACAACTTTAATTCAATTTATGACAACATGAA-AATGCTC
* * * *
7550819 AATTTGAAAAATTAAATAGCAGCTTAATTTAATTTAAGACCGCATGAA
65 AATTTGAAAAATAAAACAGCAGCTTAATTCAATTTAAGACAGCATGAA
* *
7550867 AATGCTCAATTTGATACACTAAAACACCAACTTTAATTCAATTTATGACAACATGAAAATGCTCA
1 AATGCTCAATTTGAAACACTAAAACAACAACTTTAATTCAATTTATGACAACATGAAAATGCTCA
* * * *
7550932 ATTTGAAACACTAAAACAGCAGCTTGATTCAATTTAAGACAGTATGCA
66 ATTTGAAA-AATAAAACAGCAGCTTAATTCAATTTAAGACAGCATGAA
* * *
7550980 AATGCTCAATTTGAAACACTCAAACAACAACTTTAATTCAATTTATGACAGCATGCAAAT
1 AATGCTCAATTTGAAACACTAAAACAACAACTTTAATTCAATTTATGACAACATGAAAAT
7551040 AGTAACAATA
Statistics
Matches: 146, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
111 24 0.16
112 34 0.23
113 88 0.60
ACGTcount: A:0.42, C:0.17, G:0.11, T:0.30
Consensus pattern (112 bp):
AATGCTCAATTTGAAACACTAAAACAACAACTTTAATTCAATTTATGACAACATGAAAATGCTCA
ATTTGAAAAATAAAACAGCAGCTTAATTCAATTTAAGACAGCATGAA
Found at i:7550988 original size:56 final size:57
Alignment explanation
Indices: 7550786--7551039 Score: 273
Period size: 57 Copynumber: 4.5 Consensus size: 57
7550776 GAAGCAACAA
* * * * * * * *
7550786 TTTAATTTAATTTAGGACAGCGT-AATAATACTCAATTTGAAA-AATTAAATAGCAGC
1 TTTAATTCAATTTAAGACAGCATGAA-AATGCTCAATTTGAAACACTAAAACAGCAAC
* * * *
7550842 -TTAATTTAATTTAAGACCGCATGAAAATGCTCAATTTGATACACTAAAACACCAAC
1 TTTAATTCAATTTAAGACAGCATGAAAATGCTCAATTTGAAACACTAAAACAGCAAC
* * *
7550898 TTTAATTCAATTTATGACAACATGAAAATGCTCAATTTGAAACACTAAAACAGCAGC
1 TTTAATTCAATTTAAGACAGCATGAAAATGCTCAATTTGAAACACTAAAACAGCAAC
* * * * *
7550955 -TTGATTCAATTTAAGACAGTATGCAAATGCTCAATTTGAAACACTCAAACAACAAC
1 TTTAATTCAATTTAAGACAGCATGAAAATGCTCAATTTGAAACACTAAAACAGCAAC
* *
7551011 TTTAATTCAATTTATGACAGCATGCAAAT
1 TTTAATTCAATTTAAGACAGCATGAAAAT
7551040 AGTAACAATA
Statistics
Matches: 166, Mismatches: 28, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
55 33 0.20
56 59 0.36
57 74 0.45
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.30
Consensus pattern (57 bp):
TTTAATTCAATTTAAGACAGCATGAAAATGCTCAATTTGAAACACTAAAACAGCAAC
Found at i:7556228 original size:5 final size:5
Alignment explanation
Indices: 7556220--7556247 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
7556210 AATTTAACCA
7556220 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTAT TTTAT TTTAT TTTAT TTTAT TTT
7556248 TAGTTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:7558657 original size:21 final size:21
Alignment explanation
Indices: 7558631--7558675 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7558621 AGTAAGTTTA
**
7558631 ATTCAATTTAATACAATTCAT
1 ATTCAATCCAATACAATTCAT
*
7558652 ATTCAATCCAATCCAATTCAT
1 ATTCAATCCAATACAATTCAT
7558673 ATT
1 ATT
7558676 TTAGGCAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (21 bp):
ATTCAATCCAATACAATTCAT
Found at i:7565907 original size:24 final size:24
Alignment explanation
Indices: 7565847--7565914 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 24
7565837 ACTTTATAAT
* *
7565847 GGGAAGCTCATG-CGAGCCAATAAC
1 GGGAAGCT-ATGAAGAGCCATTAAC
*
7565871 GGGTAA-CTCTGAAGAGCCATTAAC
1 GGG-AAGCTATGAAGAGCCATTAAC
*
7565895 GGGAAGCTATGAATAGCCAT
1 GGGAAGCTATGAAGAGCCAT
7565915 ATATCAGAAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
23 4 0.11
24 30 0.83
25 2 0.06
ACGTcount: A:0.34, C:0.21, G:0.28, T:0.18
Consensus pattern (24 bp):
GGGAAGCTATGAAGAGCCATTAAC
Found at i:7566076 original size:24 final size:23
Alignment explanation
Indices: 7566049--7566131 Score: 67
Period size: 24 Copynumber: 3.4 Consensus size: 23
7566039 CACAACCGAT
*
7566049 CGGGATGCTCCGAAGAGCTATTAA
1 CGGGAAGCT-CGAAGAGCTATTAA
* *
7566073 CGGGAAGCTCGCAAGAACCATATAA
1 CGGGAAGCTCG-AAGAGCTAT-TAA
* * *
7566098 CGGAAAGCTCGATAGGGCTAATAA
1 CGGGAAGCTCGA-AGAGCTATTAA
*
7566122 CGGGATGCTC
1 CGGGAAGCTC
7566132 TTTCAAGCTG
Statistics
Matches: 46, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
23 2 0.04
24 27 0.59
25 17 0.37
ACGTcount: A:0.33, C:0.22, G:0.29, T:0.17
Consensus pattern (23 bp):
CGGGAAGCTCGAAGAGCTATTAA
Found at i:7569705 original size:21 final size:21
Alignment explanation
Indices: 7569681--7569721 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7569671 GTAAATTTAA
*
7569681 TTCAATTTAATACAATTCATG
1 TTCAATTCAATACAATTCATG
*
7569702 TTCAATTCAATCCAATTCAT
1 TTCAATTCAATACAATTCAT
7569722 ATTTTAGGCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.20, G:0.02, T:0.41
Consensus pattern (21 bp):
TTCAATTCAATACAATTCATG
Found at i:7574019 original size:12 final size:11
Alignment explanation
Indices: 7573967--7574038 Score: 56
Period size: 12 Copynumber: 6.0 Consensus size: 11
7573957 CTTATTTTGC
*
7573967 TTTATTTTGAT
1 TTTATTTTTAT
7573978 TTTATTTTTACT
1 TTTATTTTTA-T
7573990 TATT-TTTTTCAT
1 T-TTATTTTT-AT
7574002 TATTATTTGTTAT
1 T-TTATTT-TTAT
7574015 TTTATTTGTTAT
1 TTTATTT-TTAT
*
7574027 AATTATTTTTAT
1 -TTTATTTTTAT
7574039 CTGTTTTCTT
Statistics
Matches: 53, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
11 9 0.17
12 27 0.51
13 15 0.28
14 2 0.04
ACGTcount: A:0.21, C:0.03, G:0.04, T:0.72
Consensus pattern (11 bp):
TTTATTTTTAT
Found at i:7574284 original size:5 final size:6
Alignment explanation
Indices: 7574269--7574293 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
7574259 TTGAAATATG
7574269 TTTTTA TTTTTA TTTTTA TTTTTA T
1 TTTTTA TTTTTA TTTTTA TTTTTA T
7574294 GATTGTTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:7574782 original size:13 final size:13
Alignment explanation
Indices: 7574764--7574800 Score: 58
Period size: 13 Copynumber: 2.8 Consensus size: 13
7574754 TTTCTCTAAA
7574764 TTGAAGTATT-ATC
1 TTGAAGT-TTGATC
7574777 TTGAAGTTTGATC
1 TTGAAGTTTGATC
7574790 TTGAAGTTTGA
1 TTGAAGTTTGA
7574801 GATTTGCAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 2 0.09
13 21 0.91
ACGTcount: A:0.27, C:0.05, G:0.22, T:0.46
Consensus pattern (13 bp):
TTGAAGTTTGATC
Found at i:7578936 original size:13 final size:13
Alignment explanation
Indices: 7578916--7578991 Score: 100
Period size: 13 Copynumber: 5.8 Consensus size: 13
7578906 TTTATAAACA
7578916 TTTCAAAAGCACT
1 TTTCAAAAGCACT
*
7578929 TCTCAAAAGCACT
1 TTTCAAAAGCACT
*
7578942 TCTCAAAAGCACT
1 TTTCAAAAGCACT
*
7578955 TTTCCACAA-CACT
1 TTT-CAAAAGCACT
*
7578968 TTTCAAAAACACT
1 TTTCAAAAGCACT
7578981 TTTCAAAAGCA
1 TTTCAAAAGCA
7578992 TTGACAAACT
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
12 4 0.07
13 48 0.86
14 4 0.07
ACGTcount: A:0.39, C:0.28, G:0.05, T:0.28
Consensus pattern (13 bp):
TTTCAAAAGCACT
Found at i:7579863 original size:26 final size:23
Alignment explanation
Indices: 7579808--7579860 Score: 72
Period size: 23 Copynumber: 2.3 Consensus size: 23
7579798 AAAAAATAGT
*
7579808 AAAAAAGAAGAAGCAAAAACTGC
1 AAAAAAGAAGAAGAAAAAACTGC
7579831 AAAAAAGAAGAAGTAAAAAAGC-GC
1 AAAAAAGAAGAAG-AAAAAA-CTGC
7579855 AAAAAA
1 AAAAAA
7579861 AAGTGGCCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
23 13 0.48
24 13 0.48
25 1 0.04
ACGTcount: A:0.70, C:0.09, G:0.17, T:0.04
Consensus pattern (23 bp):
AAAAAAGAAGAAGAAAAAACTGC
Found at i:7590176 original size:191 final size:191
Alignment explanation
Indices: 7589852--7590233 Score: 764
Period size: 191 Copynumber: 2.0 Consensus size: 191
7589842 TCCGCATCAC
7589852 AAACTATTACAATACAAACAGATTAAGGGCTAGTTTAGCATTGCTTCTCATAAGCATTTTTGGGA
1 AAACTATTACAATACAAACAGATTAAGGGCTAGTTTAGCATTGCTTCTCATAAGCATTTTTGGGA
7589917 CAAAAAGCACTTTTGAAATAAAAGCATTGTTAAACAATATGCTTTTGAGACAAAAATAAAATACT
66 CAAAAAGCACTTTTGAAATAAAAGCATTGTTAAACAATATGCTTTTGAGACAAAAATAAAATACT
7589982 TTACAAAAGCACTTTTTTTTTACCAACAGCAAAAACACAAATTTTTAACCTAAAAGTGCTT
131 TTACAAAAGCACTTTTTTTTTACCAACAGCAAAAACACAAATTTTTAACCTAAAAGTGCTT
7590043 AAACTATTACAATACAAACAGATTAAGGGCTAGTTTAGCATTGCTTCTCATAAGCATTTTTGGGA
1 AAACTATTACAATACAAACAGATTAAGGGCTAGTTTAGCATTGCTTCTCATAAGCATTTTTGGGA
7590108 CAAAAAGCACTTTTGAAATAAAAGCATTGTTAAACAATATGCTTTTGAGACAAAAATAAAATACT
66 CAAAAAGCACTTTTGAAATAAAAGCATTGTTAAACAATATGCTTTTGAGACAAAAATAAAATACT
7590173 TTACAAAAGCACTTTTTTTTTACCAACAGCAAAAACACAAATTTTTAACCTAAAAGTGCTT
131 TTACAAAAGCACTTTTTTTTTACCAACAGCAAAAACACAAATTTTTAACCTAAAAGTGCTT
7590234 CTAAAAAGCA
Statistics
Matches: 191, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
191 191 1.00
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.31
Consensus pattern (191 bp):
AAACTATTACAATACAAACAGATTAAGGGCTAGTTTAGCATTGCTTCTCATAAGCATTTTTGGGA
CAAAAAGCACTTTTGAAATAAAAGCATTGTTAAACAATATGCTTTTGAGACAAAAATAAAATACT
TTACAAAAGCACTTTTTTTTTACCAACAGCAAAAACACAAATTTTTAACCTAAAAGTGCTT
Found at i:7603534 original size:30 final size:30
Alignment explanation
Indices: 7603500--7603561 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
7603490 AACTTATTTA
7603500 TTGTTAATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
*
7603530 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
7603560 TT
1 TT
7603562 AATTGTTAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.24, C:0.03, G:0.15, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:7610420 original size:25 final size:26
Alignment explanation
Indices: 7610379--7610452 Score: 73
Period size: 25 Copynumber: 2.9 Consensus size: 26
7610369 AATGCTCATA
* *
7610379 CGAGCACATA-AATGGGAAACTC-TTT
1 CGAGC-CATATAACGGGAAACTCATGT
*
7610404 CGAGCCATATAACGGGAAGCTCATGT
1 CGAGCCATATAACGGGAAACTCATGT
* *
7610430 -GAGCCATGTAACGGGAAGCTCAT
1 CGAGCCATATAACGGGAAACTCAT
7610453 AAGAGGCATA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
24 4 0.09
25 37 0.86
26 2 0.05
ACGTcount: A:0.32, C:0.22, G:0.26, T:0.20
Consensus pattern (26 bp):
CGAGCCATATAACGGGAAACTCATGT
Found at i:7610575 original size:25 final size:25
Alignment explanation
Indices: 7610405--7610581 Score: 89
Period size: 25 Copynumber: 7.1 Consensus size: 25
7610395 AAACTCTTTC
* *
7610405 GAGCCATATAACGGGAAGCTC-ATGT
1 GAGCCATATATCGGGAAGCTCTA-GA
* *
7610430 GAGCCATGTAACGGGAAGCTCATA-A
1 GAGCCATATATCGGGAAGCTC-TAGA
* * * *
7610455 GAGGCATA-ATCAGGAAGTTC-ATGC
1 GAGCCATATATCGGGAAGCTCTA-GA
* **
7610479 GAGCCA-ATATCGGGTAGCTCCGGA
1 GAGCCATATATCGGGAAGCTCTAGA
* *
7610503 GAGCCAT-TAATCAGGAAGCTCATGAAA
1 GAGCCATAT-ATCGGGAAGCTC-T-AGA
* *
7610530 GAACC-TTTAATCGGGAAGCTCTAGA
1 GAGCCATAT-ATCGGGAAGCTCTAGA
* *
7610555 GAGCCATATATCAGGAAGCTCAAGA
1 GAGCCATATATCGGGAAGCTCTAGA
7610580 GA
1 GA
7610582 TCCAATACTG
Statistics
Matches: 114, Mismatches: 26, Indels: 24
0.70 0.16 0.15
Matches are distributed among these distances:
22 1 0.01
23 1 0.01
24 31 0.27
25 58 0.51
26 4 0.04
27 19 0.17
ACGTcount: A:0.34, C:0.20, G:0.27, T:0.19
Consensus pattern (25 bp):
GAGCCATATATCGGGAAGCTCTAGA
Found at i:7610612 original size:24 final size:24
Alignment explanation
Indices: 7610585--7610632 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7610575 CAAGAGATCC
* *
7610585 AATACTGGGATACTCTTGAGAGCT
1 AATAATGGGACACTCTTGAGAGCT
* *
7610609 AATAATGGGACGCTCTTGCGAGCT
1 AATAATGGGACACTCTTGAGAGCT
7610633 GTGGTGTGTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (24 bp):
AATAATGGGACACTCTTGAGAGCT
Found at i:7614318 original size:16 final size:16
Alignment explanation
Indices: 7614297--7614327 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7614287 GACTGAAAGC
7614297 TTCCAAAAATCTATTT
1 TTCCAAAAATCTATTT
*
7614313 TTCCAACAATCTATT
1 TTCCAAAAATCTATT
7614328 GTCCTTTGCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TTCCAAAAATCTATTT
Found at i:7622316 original size:13 final size:13
Alignment explanation
Indices: 7622298--7622324 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7622288 TACAAACGAT
7622298 AAAATTTTCACAC
1 AAAATTTTCACAC
7622311 AAAATTTTCACAC
1 AAAATTTTCACAC
7622324 A
1 A
7622325 TATAAATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAATTTTCACAC
Found at i:7623806 original size:13 final size:12
Alignment explanation
Indices: 7623756--7623797 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
7623746 CAAGCAGTTT
7623756 TTCATTCA-TAA
1 TTCATTCATTAA
* *
7623767 TTGATTTTATTAA
1 TTCA-TTCATTAA
7623780 TTCATTCATTAA
1 TTCATTCATTAA
7623792 TTCATT
1 TTCATT
7623798 TCATCAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
11 3 0.12
12 16 0.64
13 6 0.24
ACGTcount: A:0.31, C:0.12, G:0.02, T:0.55
Consensus pattern (12 bp):
TTCATTCATTAA
Found at i:7636486 original size:31 final size:31
Alignment explanation
Indices: 7636445--7636503 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
7636435 GGTCATTGGC
* *
7636445 CTATTCAAAAGTTTTCATTTAAGTCACTGAA
1 CTATTAAAAAGTTTTCATTCAAGTCACTGAA
*
7636476 CTATTAAAAAGTTTTTATTCAAGTCACT
1 CTATTAAAAAGTTTTCATTCAAGTCACT
7636504 AGGTTGTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.08, T:0.41
Consensus pattern (31 bp):
CTATTAAAAAGTTTTCATTCAAGTCACTGAA
Found at i:7636874 original size:28 final size:28
Alignment explanation
Indices: 7636837--7636908 Score: 126
Period size: 28 Copynumber: 2.6 Consensus size: 28
7636827 AACTTTTGAA
*
7636837 TAGTTCAGTGACCAAATTATAAATTTTT
1 TAGTTAAGTGACCAAATTATAAATTTTT
*
7636865 TAGTTAAGTGACCAAATTATAACTTTTT
1 TAGTTAAGTGACCAAATTATAAATTTTT
7636893 TAGTTAAGTGACCAAA
1 TAGTTAAGTGACCAAA
7636909 ATGAAAACAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.39
Consensus pattern (28 bp):
TAGTTAAGTGACCAAATTATAAATTTTT
Found at i:7637948 original size:37 final size:36
Alignment explanation
Indices: 7637907--7637979 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 36
7637897 TTTGTCATTT
*
7637907 AAAAAAGGTCATCGGGCTTCCTACTTCCGACTTCACC
1 AAAAAAGGTCATCGGACTTCCT-CTTCCGACTTCACC
*
7637944 AAAAAAGGTCATCGGACTTCCTTTTCCGACTTCACC
1 AAAAAAGGTCATCGGACTTCCTCTTCCGACTTCACC
7637980 GCTATTTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
36 13 0.38
37 21 0.62
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (36 bp):
AAAAAAGGTCATCGGACTTCCTCTTCCGACTTCACC
Found at i:7641867 original size:81 final size:81
Alignment explanation
Indices: 7641720--7641882 Score: 202
Period size: 81 Copynumber: 2.0 Consensus size: 81
7641710 TTCTAAGCTT
** * * * ** *
7641720 TTGATTTCCTCTGCAATCTTTGTTTTCTCTATTAAGGTCTCAAACACCCTTTCTAGGTATGAAGC
1 TTGATTTCCTCCACAATCTTGGTTTTATCCACGAAGATCTCAAACACCCTTTCTAGGTATGAAGC
*
7641785 AACCTGAATTTTGAGG
66 AACCTGAATTTTAAGG
* * *
7641801 TTGATTTCCTCCACAATCTTGGTTTTATCCACGAAGATCTTAAACACCCTTTTCTA-GTGTGGAG
1 TTGATTTCCTCCACAATCTTGGTTTTATCCACGAAGATCTCAAACACCC-TTTCTAGGTATGAAG
7641865 CAACCTGAATTTTAAGG
65 CAACCTGAATTTTAAGG
7641882 T
1 T
7641883 CGTAACGCAA
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
81 63 0.91
82 6 0.09
ACGTcount: A:0.25, C:0.21, G:0.16, T:0.38
Consensus pattern (81 bp):
TTGATTTCCTCCACAATCTTGGTTTTATCCACGAAGATCTCAAACACCCTTTCTAGGTATGAAGC
AACCTGAATTTTAAGG
Found at i:7645000 original size:6 final size:6
Alignment explanation
Indices: 7644989--7645014 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
7644979 ATACATAATA
7644989 TTTTAT TTTTAT TTTTAT TTTTAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TT
7645015 CTCCATAGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:7646088 original size:20 final size:20
Alignment explanation
Indices: 7646063--7646123 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
7646053 ATTTATCTGT
7646063 AATATTGGTGGCTTGTCCAC
1 AATATTGGTGGCTTGTCCAC
** * **
7646083 AATATTGGAAGCTTATCTGC
1 AATATTGGTGGCTTGTCCAC
*
7646103 AATACTGGTGGCTTGTCCAC
1 AATATTGGTGGCTTGTCCAC
7646123 A
1 A
7646124 CACTGGTATG
Statistics
Matches: 30, Mismatches: 11, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.33
Consensus pattern (20 bp):
AATATTGGTGGCTTGTCCAC
Found at i:7646404 original size:10 final size:10
Alignment explanation
Indices: 7646367--7646404 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
7646357 CGATTGGTAT
7646367 CAAGATTTGGG
1 CAAGATTT-GG
7646378 CAAGATTT-G
1 CAAGATTTGG
7646387 CAAGGATTTGG
1 CAA-GATTTGG
7646398 CAAGATT
1 CAAGATT
7646405 ATCAAAGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
9 4 0.16
10 9 0.36
11 12 0.48
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.29
Consensus pattern (10 bp):
CAAGATTTGG
Found at i:7647497 original size:44 final size:44
Alignment explanation
Indices: 7647434--7647523 Score: 137
Period size: 44 Copynumber: 2.0 Consensus size: 44
7647424 TGATTGTAAT
*
7647434 TTAAATTCTAATAATTTTTAAAAGTGTAATTATCACAAATTCTA
1 TTAAATTCTAATAATTTTTAAAAGTATAATTATCACAAATTCTA
* *
7647478 TTAAATTTTAA-ATATTTTTAAATGTATAATTATCACAAATTCTA
1 TTAAATTCTAATA-ATTTTTAAAAGTATAATTATCACAAATTCTA
7647522 TT
1 TT
7647524 TTATTTCAAC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
43 1 0.02
44 41 0.98
ACGTcount: A:0.42, C:0.08, G:0.03, T:0.47
Consensus pattern (44 bp):
TTAAATTCTAATAATTTTTAAAAGTATAATTATCACAAATTCTA
Found at i:7648923 original size:178 final size:179
Alignment explanation
Indices: 7648622--7648980 Score: 702
Period size: 178 Copynumber: 2.0 Consensus size: 179
7648612 CTAACAATTC
7648622 TAAATTAAATTTTATAATTATTCTTAAATATCAATTTAATAATATGATAGGAAATAAAAAATATT
1 TAAATTAAA-TTTATAATTATTCTTAAATATCAATTTAATAATATGATAGGAAATAAAAAATATT
7648687 CTTATCGGTTCAAAATCTTTTCTAAACTCATACTTATATATATATATATTGTAGATATATTCTAG
65 CTTATCGGTTCAAAATCTTTTCTAAACTCATACTTATATATATATATATTGTAGATATATTCTAG
7648752 TTGCAGTTAATTAGTTTGAGTATAATTAGTTATAAAATTAATGATTCAAT
130 TTGCAGTTAATTAGTTTGAGTATAATTAGTTATAAAATTAATGATTCAAT
7648802 TAAATTAAA-TTATAATTATTCTTAAATATCAATTTAATAATATGATAGGAAATAAAAAATATTC
1 TAAATTAAATTTATAATTATTCTTAAATATCAATTTAATAATATGATAGGAAATAAAAAATATTC
7648866 TTATCGGTTCAAAATCTTTTCTAAACTCATACTTATATATATATATATTGTAGATATATTCTAGT
66 TTATCGGTTCAAAATCTTTTCTAAACTCATACTTATATATATATATATTGTAGATATATTCTAGT
7648931 TGCAGTTAATTAGTTTGAGTATAATTAGTTATAAAATTAATGATTCAAT
131 TGCAGTTAATTAGTTTGAGTATAATTAGTTATAAAATTAATGATTCAAT
7648980 T
1 T
7648981 TAATATTAGT
Statistics
Matches: 179, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
178 170 0.95
180 9 0.05
ACGTcount: A:0.41, C:0.07, G:0.08, T:0.43
Consensus pattern (179 bp):
TAAATTAAATTTATAATTATTCTTAAATATCAATTTAATAATATGATAGGAAATAAAAAATATTC
TTATCGGTTCAAAATCTTTTCTAAACTCATACTTATATATATATATATTGTAGATATATTCTAGT
TGCAGTTAATTAGTTTGAGTATAATTAGTTATAAAATTAATGATTCAAT
Found at i:7649733 original size:11 final size:11
Alignment explanation
Indices: 7649717--7649783 Score: 61
Period size: 11 Copynumber: 6.4 Consensus size: 11
7649707 TGGTATTATT
7649717 ATTTTTTAATA
1 ATTTTTTAATA
7649728 ATTTTTT-ATAA
1 ATTTTTTAAT-A
*
7649739 ATTTTTAAATA
1 ATTTTTTAATA
7649750 A-TTTTT-ATA
1 ATTTTTTAATA
* *
7649759 AATTTATAAT-
1 ATTTTTTAATA
*
7649769 ATTTTTTAAAA
1 ATTTTTTAATA
7649780 ATTT
1 ATTT
7649784 AAAATTTCTT
Statistics
Matches: 45, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
9 4 0.09
10 17 0.38
11 22 0.49
12 2 0.04
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (11 bp):
ATTTTTTAATA
Found at i:7649743 original size:21 final size:21
Alignment explanation
Indices: 7649719--7649783 Score: 89
Period size: 21 Copynumber: 3.1 Consensus size: 21
7649709 GTATTATTAT
7649719 TTTTTAATAATTTTTTATAAA
1 TTTTTAATAATTTTTTATAAA
7649740 TTTTTAAATAA-TTTTTATAAA
1 TTTTT-AATAATTTTTTATAAA
* *
7649761 TTTATAAT-ATTTTTTAAAAA
1 TTTTTAATAATTTTTTATAAA
7649781 TTT
1 TTT
7649784 AAAATTTCTT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
19 1 0.03
20 15 0.38
21 19 0.47
22 5 0.12
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTTTAATAATTTTTTATAAA
Found at i:7649762 original size:10 final size:10
Alignment explanation
Indices: 7649719--7649763 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
7649709 GTATTATTAT
*
7649719 TTTTTAATAAT
1 TTTTT-ATAAA
7649730 TTTTTATAAA
1 TTTTTATAAA
*
7649740 TTTTTAAATAA
1 TTTTTATA-AA
7649751 TTTTTATAAA
1 TTTTTATAAA
7649761 TTT
1 TTT
7649764 ATAATATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
10 16 0.53
11 14 0.47
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (10 bp):
TTTTTATAAA
Found at i:7649769 original size:20 final size:20
Alignment explanation
Indices: 7649723--7649784 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
7649713 TATTATTTTT
*
7649723 TAATAATTTTTTATAAATTTT
1 TAATAA-TTTTTATAAATTTA
7649744 TAAATAATTTTTATAAATTTA
1 T-AATAATTTTTATAAATTTA
* *
7649765 TAATATTTTTTAAAAATTTA
1 TAATAATTTTTATAAATTTA
7649785 AAATTTCTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
20 17 0.46
21 15 0.41
22 5 0.14
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (20 bp):
TAATAATTTTTATAAATTTA
Found at i:7649879 original size:36 final size:36
Alignment explanation
Indices: 7649833--7649905 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
7649823 GGATTTTTTC
7649833 CCTTAAGCCTTATTAATTAAAAGAATTTCTAATTTA
1 CCTTAAGCCTTATTAATTAAAAGAATTTCTAATTTA
*
7649869 CCTTTAGCCTTATTAATTAAAAGAATTTCTAATTTA
1 CCTTAAGCCTTATTAATTAAAAGAATTTCTAATTTA
7649905 C
1 C
7649906 TTTCAAGAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.37, C:0.15, G:0.05, T:0.42
Consensus pattern (36 bp):
CCTTAAGCCTTATTAATTAAAAGAATTTCTAATTTA
Found at i:7651289 original size:19 final size:19
Alignment explanation
Indices: 7651245--7651305 Score: 79
Period size: 20 Copynumber: 3.2 Consensus size: 19
7651235 TTACAAAAAA
* *
7651245 AAAATTTAAAATAATTTTCA
1 AAAATTCAAAATAATTTT-T
7651265 AAAATTCAAAATAATTTTT
1 AAAATTCAAAATAATTTTT
*
7651284 AAAATTCAAAAT-ATTTAT
1 AAAATTCAAAATAATTTTT
7651302 AAAA
1 AAAA
7651306 ATTTCTAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
18 9 0.24
19 12 0.32
20 17 0.45
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAATTCAAAATAATTTTT
Found at i:7651306 original size:19 final size:19
Alignment explanation
Indices: 7651244--7651308 Score: 87
Period size: 19 Copynumber: 3.4 Consensus size: 19
7651234 ATTACAAAAA
*
7651244 AAAAATTTAAAATAATTTT
1 AAAAATTCAAAATAATTTT
7651263 CAAAAATTCAAAATAATTTT
1 -AAAAATTCAAAATAATTTT
*
7651283 TAAAATTCAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
7651302 AAAAATT
1 AAAAATT
7651309 TCTAAATTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
18 4 0.10
19 19 0.46
20 18 0.44
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:7651349 original size:10 final size:10
Alignment explanation
Indices: 7651322--7651363 Score: 59
Period size: 10 Copynumber: 4.2 Consensus size: 10
7651312 AAATTTATAT
7651322 TTTTAAATAAA
1 TTTTAAA-AAA
*
7651333 TTATAAAAAA
1 TTTTAAAAAA
7651343 TTTT-AAAAA
1 TTTTAAAAAA
7651352 TTTTAAAAAA
1 TTTTAAAAAA
7651362 TT
1 TT
7651364 CAAAAAAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
9 9 0.32
10 13 0.46
11 6 0.21
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (10 bp):
TTTTAAAAAA
Found at i:7651358 original size:19 final size:20
Alignment explanation
Indices: 7651243--7651363 Score: 81
Period size: 19 Copynumber: 5.9 Consensus size: 20
7651233 AATTACAAAA
*
7651243 AAAAAATTTAAAATAATTTT
1 AAAAATTTTAAAATAATTTT
*
7651263 CAAAAA-TTCAAAATAATTTT
1 -AAAAATTTTAAAATAATTTT
* *
7651283 TAAAA-TTCAAAAT-ATTTAT
1 AAAAATTTTAAAATAATTT-T
*
7651302 AAAAATTTCTAAATTTATATTTTT
1 AAAAATTT-TAAA---ATAATTTT
*
7651326 AAATAAATTATAAAA-AATTTT
1 -AA-AAATTTTAAAATAATTTT
7651347 AAAAATTTTAAAA-AATT
1 AAAAATTTTAAAATAATT
7651364 CAAAAAAAAA
Statistics
Matches: 83, Mismatches: 8, Indels: 20
0.75 0.07 0.18
Matches are distributed among these distances:
18 4 0.05
19 31 0.37
20 17 0.20
21 13 0.16
22 1 0.01
24 3 0.04
25 9 0.11
26 5 0.06
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (20 bp):
AAAAATTTTAAAATAATTTT
Found at i:7652702 original size:17 final size:17
Alignment explanation
Indices: 7652677--7652757 Score: 135
Period size: 17 Copynumber: 4.8 Consensus size: 17
7652667 GAAAATCGTG
*
7652677 TACATAAATAACCAAAT
1 TACAAAAATAACCAAAT
**
7652694 TACAAAAATAACCTCAT
1 TACAAAAATAACCAAAT
7652711 TACAAAAATAACCAAAT
1 TACAAAAATAACCAAAT
7652728 TACAAAAATAACCAAAT
1 TACAAAAATAACCAAAT
7652745 TACAAAAATAACC
1 TACAAAAATAACC
7652758 TTCATTGGTT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 59 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (17 bp):
TACAAAAATAACCAAAT
Found at i:7654656 original size:45 final size:45
Alignment explanation
Indices: 7654605--7654690 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 45
7654595 TTACATTTAG
* *
7654605 TCAACACATAGCAACCACCTTATTAATCAATGATGTCCGGTGGAA
1 TCAACACATAGAAACCACCTTACTAATCAATGATGTCCGGTGGAA
*
7654650 TCAACACATAGAAACCACCTTACTAATCAATGATGTTCGGT
1 TCAACACATAGAAACCACCTTACTAATCAATGATGTCCGGT
7654691 TCACATAGTA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (45 bp):
TCAACACATAGAAACCACCTTACTAATCAATGATGTCCGGTGGAA
Found at i:7657919 original size:12 final size:12
Alignment explanation
Indices: 7657902--7657927 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7657892 TATGTTTCTA
7657902 AAAATGGAAATG
1 AAAATGGAAATG
7657914 AAAATGGAAATG
1 AAAATGGAAATG
7657926 AA
1 AA
7657928 TCATTTGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.62, C:0.00, G:0.23, T:0.15
Consensus pattern (12 bp):
AAAATGGAAATG
Found at i:7669206 original size:25 final size:25
Alignment explanation
Indices: 7669163--7669216 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
7669153 TCTGCATAGT
** *
7669163 CTATCTATAGTAGTCTCAGTATATA
1 CTATCTATAACAGTCTCAGGATATA
*
7669188 CTATCTATAACAGTTTCAGGATATA
1 CTATCTATAACAGTCTCAGGATATA
7669213 CTAT
1 CTAT
7669217 GAAAGACAGT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (25 bp):
CTATCTATAACAGTCTCAGGATATA
Found at i:7672267 original size:17 final size:18
Alignment explanation
Indices: 7672245--7672283 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7672235 ATATTTCATA
*
7672245 TTTCTTGTCA-TAGTATT
1 TTTCTTGTAAGTAGTATT
*
7672262 TTTCTTGTAAGTATTATT
1 TTTCTTGTAAGTAGTATT
7672280 TTTC
1 TTTC
7672284 CGCATTGAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 9 0.47
18 10 0.53
ACGTcount: A:0.18, C:0.10, G:0.10, T:0.62
Consensus pattern (18 bp):
TTTCTTGTAAGTAGTATT
Found at i:7678539 original size:22 final size:23
Alignment explanation
Indices: 7678500--7678547 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 23
7678490 AATTTAGAAA
7678500 AAAAAAAGAAAATGAAAAACAACT
1 AAAAAAAGAAAATGAAAAACAA-T
*
7678524 AAAAAAAG-GAAT-AAAAACAAT
1 AAAAAAAGAAAATGAAAAACAAT
7678545 AAA
1 AAA
7678548 GATTCAAAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 4 0.17
22 8 0.35
23 3 0.13
24 8 0.35
ACGTcount: A:0.77, C:0.06, G:0.08, T:0.08
Consensus pattern (23 bp):
AAAAAAAGAAAATGAAAAACAAT
Found at i:7682808 original size:141 final size:141
Alignment explanation
Indices: 7682553--7682862 Score: 390
Period size: 141 Copynumber: 2.2 Consensus size: 141
7682543 GAGCCTAACA
* * * * *
7682553 ACTATGTTCCTAAGATCATAATGTACATAGTCCCTAACATCAACATGTACATGCACGCCTTATCA
1 ACTATGTCCCTAACATCACAATGTACATAATCCCTAACATCAAAATGTACATGCACGCCTTATCA
* * * *
7682618 TGATATGCGACTTCTGTACATAGTTCAAACTAACTCAAATTGCACGCATT-CCTTCTTATGGTAT
66 TGATATGCGACTACTGTACATAGTCCAAACTAACTCAAATTACACGCATTCCCTT-TTATGATAT
*
7682682 GTATACTATTAT
130 GTATACCATTAT
* * * *
7682694 ACTATGTCCCTAACATCACAATGTACATAATCTCTAACATCAAAATGTGCATGCATGCCTTATTA
1 ACTATGTCCCTAACATCACAATGTACATAATCCCTAACATCAAAATGTACATGCACGCCTTATCA
* ** * *
7682759 TGATATGTGACCTAC-GTACATAGTCCCTACTAACTCAAATTATATGCATTCCCTTTTATGATAT
66 TGATATGCGA-CTACTGTACATAGTCCAAACTAACTCAAATTACACGCATTCCCTTTTATGATAT
*
7682823 GTGTACCATTAT
130 GTATACCATTAT
* *
7682835 AATATGTCCCTGACATCACAATGTACAT
1 ACTATGTCCCTAACATCACAATGTACAT
7682863 GCATGCCTTA
Statistics
Matches: 145, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
141 138 0.95
142 7 0.05
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (141 bp):
ACTATGTCCCTAACATCACAATGTACATAATCCCTAACATCAAAATGTACATGCACGCCTTATCA
TGATATGCGACTACTGTACATAGTCCAAACTAACTCAAATTACACGCATTCCCTTTTATGATATG
TATACCATTAT
Found at i:7682918 original size:24 final size:24
Alignment explanation
Indices: 7682891--7682942 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
7682881 TGTGTACTAT
7682891 TGTAT-TACGTCCCTAACAT-ATTAA
1 TGTATCTA-GTCCCTAACATCATT-A
7682915 TGTATCTAGTCCCTAACATCATTA
1 TGTATCTAGTCCCTAACATCATTA
7682939 TGTA
1 TGTA
7682943 CATGCATGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
24 21 0.81
25 5 0.19
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (24 bp):
TGTATCTAGTCCCTAACATCATTA
Found at i:7682951 original size:200 final size:198
Alignment explanation
Indices: 7682679--7683061 Score: 472
Period size: 199 Copynumber: 1.9 Consensus size: 198
7682669 CTTCTTATGG
* * *
7682679 TATGTATACTATTATACTATGTCCCTAACATCACAATGTACATAATCTCTAACATCAAAATGTGC
1 TATGTATACTATTATACTACGTCCCTAACATCACAATGTACATAATCCCTAACATCAAAATGTAC
* *
7682744 ATGCATGCCTTATTATG-ATATG-TGACCTACGTA-CATAGTCCCTACTAACTCAAATTATATGC
66 ATGCATGCCTTATTATGCATATGATGA--T--GTATC-TAGTCCCTAATAACTCAAATTACATGC
**
7682806 ATTCCCTT-TTATGATATGTGTACCATTATAATATGTCCCTGACATCACAATGTACATGCATGCC
126 ATT-CCTTCTTATGATATGTGTACCATTATAATATGTCCCCAACATCACAATGTACATGCATGCC
7682870 TTACTATAA
190 TTACTATAA
* * * * * **
7682879 TATGTGTACTATTGTATTACGTCCCTAACAT-ATTAATGTATC-TAGTCCCTAACATCATTATGT
1 TATGTATACTATTATACTACGTCCCTAACATCA-CAATGTA-CATAATCCCTAACATCAAAATGT
* *
7682942 ACATGCATGCCTTATTATGCCTTATGATGATGTATCTAGTCCCTAATAACTGAAATTACATGCAT
64 ACATGCATGCCTTATTATG-CATATGATGATGTATCTAGTCCCTAATAACTCAAATTACATGCAT
* * *
7683007 TCCTTCTTATTATATGTGTACTATTATACTATGTCCCCAACATCACAATGTACAT
128 TCCTTCTTATGATATGTGTACCATTATAATATGTCCCCAACATCACAATGTACAT
7683062 AGTCCCTGAC
Statistics
Matches: 157, Mismatches: 19, Indels: 15
0.82 0.10 0.08
Matches are distributed among these distances:
198 4 0.03
199 75 0.48
200 69 0.44
201 2 0.01
202 4 0.03
203 3 0.02
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.37
Consensus pattern (198 bp):
TATGTATACTATTATACTACGTCCCTAACATCACAATGTACATAATCCCTAACATCAAAATGTAC
ATGCATGCCTTATTATGCATATGATGATGTATCTAGTCCCTAATAACTCAAATTACATGCATTCC
TTCTTATGATATGTGTACCATTATAATATGTCCCCAACATCACAATGTACATGCATGCCTTACTA
TAA
Found at i:7683026 original size:140 final size:141
Alignment explanation
Indices: 7682858--7683199 Score: 372
Period size: 140 Copynumber: 2.4 Consensus size: 141
7682848 CATCACAATG
* * * * *
7682858 TACATGCATGCCTTAC-TATAATATGTGTACTATTGTATTACGTCCCTAACAT-ATTAATGTATC
1 TACATGCATTCCTT-CTTATAATATGTGTACTATTATACTACGTCCCCAACATCA-CAATGTA-C
* * * * * * *
7682921 -TAGTCCCTAACATCATTATGTACATGCATGCCTTATTATGCCTTA-T-GATGATGTATCTAGTC
63 ATAGTCCCTAACATCAATATGTACATCCATACCTTATTATG-ATAAGTGGATGATGTATATAGCC
*
7682983 CCTAAT-AACTGAAAT
127 CCT-ATCAACTCAAAT
* *
7682998 TACATGCATTCCTTCTTATTATATGTGTACTATTATACTATGTCCCCAACATCACAATGTACATA
1 TACATGCATTCCTTCTTATAATATGTGTACTATTATACTACGTCCCCAACATCACAATGTACATA
* * *
7683063 GTCCCTGACATCAATATGTACATCCATACCTTATTATGATAAGTGGCTTATGTATATAGCCCCTA
66 GTCCCTAACATCAATATGTACATCCATACCTTATTATGATAAGTGGATGATGTATATAGCCCCTA
7683128 TCAACTCAAAT
131 TCAACTCAAAT
* * * ** * *
7683139 TACATGCATTACTTCTTATGATATGTGTATTATTATACTATATCCCTAATATCACAATGTA
1 TACATGCATTCCTTCTTATAATATGTGTACTATTATACTACGTCCCCAACATCACAATGTA
7683200 AATGCATGTC
Statistics
Matches: 172, Mismatches: 24, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
139 4 0.02
140 89 0.52
141 79 0.46
ACGTcount: A:0.31, C:0.21, G:0.11, T:0.38
Consensus pattern (141 bp):
TACATGCATTCCTTCTTATAATATGTGTACTATTATACTACGTCCCCAACATCACAATGTACATA
GTCCCTAACATCAATATGTACATCCATACCTTATTATGATAAGTGGATGATGTATATAGCCCCTA
TCAACTCAAAT
Found at i:7683175 original size:141 final size:140
Alignment explanation
Indices: 7682878--7683199 Score: 382
Period size: 141 Copynumber: 2.3 Consensus size: 140
7682868 CCTTACTATA
* * * * *
7682878 ATATGTGTACTATTGTATTACGTCCCTAACAT-ATTAATGTATCTAGTCCCTAACATCATTATGT
1 ATATGTGTACTATTATACTATGTCCCTAACATCA-CAATGTATCTAGTCCCTAACATCAATATGT
* * * * * * *
7682942 ACATGCATGCCTTATTATGCCTTATGATGATGTATCTAGTCCCTAATAACTGAAATTACATGCAT
65 ACATCCATACCTTATTATGCATAATGATGATGTATATAGCCCCTAATAACTCAAATTACATGCAT
* *
7683007 TCCTTCTTATT
130 TACTTCTTATG
* *
7683018 ATATGTGTACTATTATACTATGTCCCCAACATCACAATGTA-CATAGTCCCTGACATCAATATGT
1 ATATGTGTACTATTATACTATGTCCCTAACATCACAATGTATC-TAGTCCCTAACATCAATATGT
* *
7683082 ACATCCATACCTTATTATG-ATAAGTGGCTTATGTATATAGCCCCT-ATCAACTCAAATTACATG
65 ACATCCATACCTTATTATGCATAA-T-GATGATGTATATAGCCCCTAAT-AACTCAAATTACATG
7683145 CATTACTTCTTATG
127 CATTACTTCTTATG
* * *
7683159 ATATGTGTATTATTATACTATATCCCTAATATCACAATGTA
1 ATATGTGTACTATTATACTATGTCCCTAACATCACAATGTA
7683200 AATGCATGTC
Statistics
Matches: 155, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
139 3 0.02
140 73 0.47
141 79 0.51
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.38
Consensus pattern (140 bp):
ATATGTGTACTATTATACTATGTCCCTAACATCACAATGTATCTAGTCCCTAACATCAATATGTA
CATCCATACCTTATTATGCATAATGATGATGTATATAGCCCCTAATAACTCAAATTACATGCATT
ACTTCTTATG
Found at i:7691013 original size:44 final size:44
Alignment explanation
Indices: 7690742--7691068 Score: 179
Period size: 44 Copynumber: 7.5 Consensus size: 44
7690732 TCTATTCTAT
* * * *
7690742 TGCAACTTCAGAGAGATAAGATTTATTACTTTAACCCGCTCCAC
1 TGCAACTTCAGGGAGATAAGATCTATTACTTTAATCTGCTCCAC
* * * * * *
7690786 TACAACTTCAGAGAGATAGGAT-TATCGACTTCAATCTACTCCAC
1 TGCAACTTCAGGGAGATAAGATCTAT-TACTTTAATCTGCTCCAC
* * * * ** *
7690830 CGCAACCTCAGGGAGATAAGATTTGCTT-CTTTGGTCTGCCCCAC
1 TGCAACTTCAGGGAGATAAGATCT-ATTACTTTAATCTGCTCCAC
** * * * *
7690874 TGTGACTTCAGGCAGATAAGA-CT-TGT-TTTCTCAGTCTGTTCCAC
1 TGCAACTTCAGGGAGATAAGATCTAT-TACTT-T-AATCTGCTCCAC
* * * * ** *
7690918 TGCAACCTCAGGGAGATAAGACCTGA-TGC---GATCCACTCTAC
1 TGCAACTTCAGGGAGATAAGATCT-ATTACTTTAATCTGCTCCAC
* *
7690959 TGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTCCAC
1 TGCAACTTCAGGGAGATAAGATCTATTACTTTAATCTGCTCCAC
* * *** *
7691003 TACAACTTCAGGGAGATAGGAT-TATCGGTTTCAATCTGATCCAC
1 TGCAACTTCAGGGAGATAAGATCTATTACTTT-AATCTGCTCCAC
7691047 TGCAACTTCAGGGAGATAAGAT
1 TGCAACTTCAGGGAGATAAGAT
7691069 TTGCCATCTT
Statistics
Matches: 211, Mismatches: 57, Indels: 30
0.71 0.19 0.10
Matches are distributed among these distances:
40 1 0.00
41 30 0.14
42 3 0.01
43 11 0.05
44 161 0.76
45 4 0.02
46 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (44 bp):
TGCAACTTCAGGGAGATAAGATCTATTACTTTAATCTGCTCCAC
Found at i:7691106 original size:217 final size:217
Alignment explanation
Indices: 7690718--7691111 Score: 587
Period size: 217 Copynumber: 1.8 Consensus size: 217
7690708 TCTAGTCTGC
* * * * *
7690718 AAGACTTGATGCGATCTATTCTATTGCAACTTCAGAGAGATAAGATTTATTACTTTAACCCGCTC
1 AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAACCCGCTC
7690783 CACTACAACTTCAGAGAGATAGGATTATCGACTTCAATCTACTCCACCGCAACCTCAGGGAGATA
66 CACTACAACTTCAGAGAGATAGGATTATCGACTTCAATCTACTCCACCGCAACCTCAGGGAGATA
* * * * *
7690848 AGATTTGCTTCTTTGGTCTGCCCCACTGTGACTTCAGGCAGATAAGACTTGTTTTCTCAGTCTGT
131 AGATTTGCATCTTCGATCTGCCCCACTCTGACTTCAGGCAGACAAGACTTGTTTTCTCAGTCTGT
7690913 TCCACTGCAACCTCAGGGAGAT
196 TCCACTGCAACCTCAGGGAGAT
*
7690935 AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAATCCGCTC
1 AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAACCCGCTC
* ** * *
7691000 CACTACAACTTCAGGGAGATAGGATTATCGGTTTCAATCTGA-TCCACTGCAACTTCAGGGAGAT
66 CACTACAACTTCAGAGAGATAGGATTATCGACTTCAATCT-ACTCCACCGCAACCTCAGGGAGAT
*
7691064 AAGATTTGCCATCTTCGATCTGCTCCACTACTG-CTT-AGGCAGACAAGA
130 AAGATTTG-CATCTTCGATCTGCCCCACT-CTGACTTCAGGCAGACAAGA
7691112 TCTGTAATTT
Statistics
Matches: 157, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
217 135 0.86
218 20 0.13
219 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.29
Consensus pattern (217 bp):
AAGACCTGATGCGATCCACTCTACTGCAACTTCAGAGAGATAAGATCTATTACTTTAACCCGCTC
CACTACAACTTCAGAGAGATAGGATTATCGACTTCAATCTACTCCACCGCAACCTCAGGGAGATA
AGATTTGCATCTTCGATCTGCCCCACTCTGACTTCAGGCAGACAAGACTTGTTTTCTCAGTCTGT
TCCACTGCAACCTCAGGGAGAT
Found at i:7692536 original size:14 final size:14
Alignment explanation
Indices: 7692517--7692556 Score: 64
Period size: 13 Copynumber: 2.9 Consensus size: 14
7692507 CCATCATTAA
7692517 TTTTCATTTTTCAC
1 TTTTCATTTTTCAC
*
7692531 TTTTCA-TTTTCAT
1 TTTTCATTTTTCAC
7692544 TTTTCATTTTTCA
1 TTTTCATTTTTCA
7692557 TCCCTTTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (14 bp):
TTTTCATTTTTCAC
Found at i:7692540 original size:6 final size:7
Alignment explanation
Indices: 7692517--7692557 Score: 66
Period size: 7 Copynumber: 6.0 Consensus size: 7
7692507 CCATCATTAA
7692517 TTTTCAT
1 TTTTCAT
*
7692524 TTTTCAC
1 TTTTCAT
7692531 TTTTCA-
1 TTTTCAT
7692537 TTTTCAT
1 TTTTCAT
7692544 TTTTCAT
1 TTTTCAT
7692551 TTTTCAT
1 TTTTCAT
7692558 CCCTTTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
6 6 0.19
7 26 0.81
ACGTcount: A:0.15, C:0.17, G:0.00, T:0.68
Consensus pattern (7 bp):
TTTTCAT
Found at i:7692541 original size:20 final size:20
Alignment explanation
Indices: 7692516--7692557 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
7692506 TCCATCATTA
7692516 ATTTTCATTTTTCACTTTTC
1 ATTTTCATTTTTCACTTTTC
*
7692536 ATTTTCATTTTTCATTTTTC
1 ATTTTCATTTTTCACTTTTC
7692556 AT
1 AT
7692558 CCCTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.67
Consensus pattern (20 bp):
ATTTTCATTTTTCACTTTTC
Found at i:7699853 original size:23 final size:23
Alignment explanation
Indices: 7699825--7699872 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
7699815 ATTGGGCTAG
*
7699825 GGTTTAATGGGTAATTCGGGTTA
1 GGTTTAATGAGTAATTCGGGTTA
* * *
7699848 GGTTTAGTTAGTATTTCGGGTTA
1 GGTTTAATGAGTAATTCGGGTTA
7699871 GG
1 GG
7699873 GTATTTTATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.19, C:0.04, G:0.35, T:0.42
Consensus pattern (23 bp):
GGTTTAATGAGTAATTCGGGTTA
Found at i:7702897 original size:21 final size:21
Alignment explanation
Indices: 7702871--7702916 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
7702861 CCAAAATCAT
7702871 TTGACTTTAATGATTTACCAC
1 TTGACTTTAATGATTTACCAC
*
7702892 TTGACTTTAATGATTTGCCAC
1 TTGACTTTAATGATTTACCAC
7702913 TTGA
1 TTGA
7702917 ACCTAATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.43
Consensus pattern (21 bp):
TTGACTTTAATGATTTACCAC
Found at i:7706282 original size:13 final size:13
Alignment explanation
Indices: 7706266--7706319 Score: 72
Period size: 13 Copynumber: 4.2 Consensus size: 13
7706256 AAATGTGTGA
* *
7706266 ATGAAATGATCAG
1 ATGAAATGATTAT
*
7706279 ATGAAATGGTTAT
1 ATGAAATGATTAT
7706292 ATGAAATGATTAT
1 ATGAAATGATTAT
*
7706305 ATGAAATGGTTAT
1 ATGAAATGATTAT
7706318 AT
1 AT
7706320 TTTGTGCCAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 36 1.00
ACGTcount: A:0.43, C:0.02, G:0.20, T:0.35
Consensus pattern (13 bp):
ATGAAATGATTAT
Found at i:7706295 original size:26 final size:26
Alignment explanation
Indices: 7706266--7706319 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
7706256 AAATGTGTGA
7706266 ATGAAATGATCAGATGAAATGGTTAT
1 ATGAAATGATCAGATGAAATGGTTAT
* *
7706292 ATGAAATGATTATATGAAATGGTTAT
1 ATGAAATGATCAGATGAAATGGTTAT
7706318 AT
1 AT
7706320 TTTGTGCCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.43, C:0.02, G:0.20, T:0.35
Consensus pattern (26 bp):
ATGAAATGATCAGATGAAATGGTTAT
Found at i:7709517 original size:21 final size:21
Alignment explanation
Indices: 7709473--7709523 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
7709463 CACACAGCCA
*
7709473 TGTATCTCAGTCACATGGTCG
1 TGTATCTCAGTCACAGGGTCG
7709494 TGTATCTCAGTCACACGGGT-G
1 TGTATCTCAGTCACA-GGGTCG
*
7709515 TGTCTCTCA
1 TGTATCTCA
7709524 ACTGCACGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
21 24 0.89
22 3 0.11
ACGTcount: A:0.18, C:0.25, G:0.24, T:0.33
Consensus pattern (21 bp):
TGTATCTCAGTCACAGGGTCG
Found at i:7709580 original size:21 final size:22
Alignment explanation
Indices: 7709534--7709580 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
7709524 ACTGCACGGC
*
7709534 CATGTCCCTCAGTCACACGAGT
1 CATGTCCCTCAGTCACACGAAT
*
7709556 -ATGTGCCTCAGTCACAC-AAT
1 CATGTCCCTCAGTCACACGAAT
7709576 CATGT
1 CATGT
7709581 ATTCCTGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 2 0.09
21 20 0.91
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.26
Consensus pattern (22 bp):
CATGTCCCTCAGTCACACGAAT
Found at i:7717539 original size:28 final size:29
Alignment explanation
Indices: 7717499--7717553 Score: 71
Period size: 28 Copynumber: 1.9 Consensus size: 29
7717489 CTAAATCTTA
7717499 ATTTTAATCTAT-ATATAA-CTAAAATAGG
1 ATTTTAATCTATAAT-TAATCTAAAATAGG
7717527 ATTTTAAGT-TATAATTAATCTAAAATA
1 ATTTTAA-TCTATAATTAATCTAAAATA
7717554 ATAAAGGTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.47, C:0.05, G:0.05, T:0.42
Consensus pattern (29 bp):
ATTTTAATCTATAATTAATCTAAAATAGG
Found at i:7718759 original size:13 final size:12
Alignment explanation
Indices: 7718746--7718788 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
7718736 TTTTATTTTA
7718746 AAATTTTAAATT
1 AAATTTTAAATT
*
7718758 AAATATTATAATT
1 AAATTTTA-AATT
7718771 -AATTTTAAATAT
1 AAATTTTAAAT-T
7718783 AAATTT
1 AAATTT
7718789 AATAATATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
11 3 0.12
12 14 0.54
13 9 0.35
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
AAATTTTAAATT
Found at i:7718778 original size:24 final size:25
Alignment explanation
Indices: 7718747--7718794 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
7718737 TTTATTTTAA
7718747 AATTTTAAAT-TAAATATT-ATAATT
1 AATTTTAAATATAAAT-TTAATAATT
7718771 AATTTTAAATATAAATTTAATAAT
1 AATTTTAAATATAAATTTAATAAT
7718795 ATGACGATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 12 0.55
25 10 0.45
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (25 bp):
AATTTTAAATATAAATTTAATAATT
Found at i:7722673 original size:12 final size:12
Alignment explanation
Indices: 7722658--7722687 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
7722648 TATATATTAA
7722658 TAAAATGATTCC
1 TAAAATGATTCC
7722670 TAAAATGATTCC
1 TAAAATGATTCC
7722682 TAAAAT
1 TAAAAT
7722688 TAAGATTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (12 bp):
TAAAATGATTCC
Found at i:7723866 original size:35 final size:36
Alignment explanation
Indices: 7723819--7723895 Score: 111
Period size: 35 Copynumber: 2.2 Consensus size: 36
7723809 ATTGTCATTG
* *
7723819 TCAATAATTTCAATATCCAACAAGCTTAAATCATAA
1 TCAATAAATTCAATATCCAACAAGCTTAAAACATAA
* *
7723855 T-AATAAATTCAATATCCAATAAGGTTAAAACATAA
1 TCAATAAATTCAATATCCAACAAGCTTAAAACATAA
7723890 TCAATA
1 TCAATA
7723896 TCTAACAAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
35 31 0.86
36 5 0.14
ACGTcount: A:0.51, C:0.16, G:0.04, T:0.30
Consensus pattern (36 bp):
TCAATAAATTCAATATCCAACAAGCTTAAAACATAA
Found at i:7723909 original size:27 final size:28
Alignment explanation
Indices: 7723879--7723931 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
7723869 TCCAATAAGG
* *
7723879 TTAAAACATA-ATCAATATCTAACAAAT
1 TTAAAACATATATCAAAATCCAACAAAT
*
7723906 TTAAGACATATATCAAAATCCAACAA
1 TTAAAACATATATCAAAATCCAACAA
7723932 TCTAAAATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 9 0.41
28 13 0.59
ACGTcount: A:0.55, C:0.17, G:0.02, T:0.26
Consensus pattern (28 bp):
TTAAAACATATATCAAAATCCAACAAAT
Found at i:7725548 original size:37 final size:37
Alignment explanation
Indices: 7725507--7725578 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
7725497 CTTATTTTTT
7725507 CCATTAGATTAGAATTCAATAACTATTTAATTAATCA
1 CCATTAGATTAGAATTCAATAACTATTTAATTAATCA
*
7725544 CCATTAGATTAGAATTCACTAACTATTTAATTAAT
1 CCATTAGATTAGAATTCAATAACTATTTAATTAAT
7725579 TATGACCAGC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.42, C:0.14, G:0.06, T:0.39
Consensus pattern (37 bp):
CCATTAGATTAGAATTCAATAACTATTTAATTAATCA
Found at i:7733665 original size:25 final size:24
Alignment explanation
Indices: 7733637--7733692 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
7733627 ATTAAAAATA
*
7733637 TTAAAAACATT-ACAATAAATATTTT
1 TTAAAAA-ATTGAAAAT-AATATTTT
* *
7733662 TTAACAAATTGAAAATAATTTTTT
1 TTAAAAAATTGAAAATAATATTTT
7733686 TTAAAAA
1 TTAAAAA
7733693 TCTTTATACT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 16 0.62
25 10 0.38
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (24 bp):
TTAAAAAATTGAAAATAATATTTT
Found at i:7733863 original size:11 final size:11
Alignment explanation
Indices: 7733847--7733881 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
7733837 ACAAGACAGT
*
7733847 AAGAAAACAGC
1 AAGAAAACAAC
*
7733858 AGGAAAACAAC
1 AAGAAAACAAC
7733869 AAGAAAACAAC
1 AAGAAAACAAC
7733880 AA
1 AA
7733882 TTTTTTTTCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.69, C:0.17, G:0.14, T:0.00
Consensus pattern (11 bp):
AAGAAAACAAC
Found at i:7735167 original size:16 final size:15
Alignment explanation
Indices: 7735156--7735186 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
7735146 TATATAATGT
7735156 ACTATTATTATATATA
1 ACTATTATTATA-ATA
7735172 ACTATTATTATAATA
1 ACTATTATTATAATA
7735187 TAGATTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 3 0.20
16 12 0.80
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (15 bp):
ACTATTATTATAATA
Found at i:7735182 original size:19 final size:20
Alignment explanation
Indices: 7735144--7735188 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
7735134 TAAACAATAA
*
7735144 TATATATAATGTACTATTAT
1 TATATATAATCTACTATTAT
*
7735164 TATATATAA-CTATTATTAT
1 TATATATAATCTACTATTAT
*
7735183 AATATA
1 TATATA
7735189 GATTATAATA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 13 0.59
20 9 0.41
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.49
Consensus pattern (20 bp):
TATATATAATCTACTATTAT
Found at i:7740929 original size:40 final size:40
Alignment explanation
Indices: 7740885--7741062 Score: 184
Period size: 40 Copynumber: 4.5 Consensus size: 40
7740875 ATACACCAAT
*
7740885 TTGACACCCAATGCCTCATCAGATAATTCGAAGTAATAAA
1 TTGACACCCAGTGCCTCATCAGATAATTCGAAGTAATAAA
*
7740925 TTGACACCCAGTGCCTCATCAGATAATTCGAAGTAATAGA
1 TTGACACCCAGTGCCTCATCAGATAATTCGAAGTAATAAA
* * * * * *
7740965 TTGACACCCAGTGTCTCATCGGCTAA-ACCAA--AGTAAA
1 TTGACACCCAGTGCCTCATCAGATAATTCGAAGTAATAAA
* * *
7741002 TTGGCACCCAGTGCCTCATC-GAACTAATCCGAAGTAGTAAA
1 TTGACACCCAGTGCCTCATCAG-A-TAATTCGAAGTAATAAA
* * *
7741043 TTAACACCCAATGTCTCATC
1 TTGACACCCAGTGCCTCATC
7741063 GACTCGAAGT
Statistics
Matches: 115, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
36 1 0.01
37 22 0.19
38 3 0.03
39 6 0.05
40 61 0.53
41 22 0.19
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.24
Consensus pattern (40 bp):
TTGACACCCAGTGCCTCATCAGATAATTCGAAGTAATAAA
Found at i:7741062 original size:78 final size:77
Alignment explanation
Indices: 7740921--7741063 Score: 207
Period size: 78 Copynumber: 1.8 Consensus size: 77
7740911 TTCGAAGTAA
* * * *
7740921 TAAATTGACACCCAGTGCCTCATCAGATAATTCGAAGTAATAGATTGACACCCAGTGTCTCATCG
1 TAAATTGACACCCAGTGCCTCATCAGATAATCCGAAGTAATAAATTAACACCCAATGTCTCATCG
7740986 GCTAAACCAAAG
66 GCTAAACCAAAG
* *
7740998 TAAATTGGCACCCAGTGCCTCATC-GAACTAATCCGAAGTAGTAAATTAACACCCAATGTCTCAT
1 TAAATTGACACCCAGTGCCTCATCAG-A-TAATCCGAAGTAATAAATTAACACCCAATGTCTCAT
7741062 CG
64 CG
7741064 ACTCGAAGTT
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
76 1 0.02
77 24 0.41
78 33 0.57
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.24
Consensus pattern (77 bp):
TAAATTGACACCCAGTGCCTCATCAGATAATCCGAAGTAATAAATTAACACCCAATGTCTCATCG
GCTAAACCAAAG
Found at i:7741741 original size:5 final size:5
Alignment explanation
Indices: 7741731--7741794 Score: 62
Period size: 5 Copynumber: 12.8 Consensus size: 5
7741721 TTCTTTCCCT
* *
7741731 TTTTC TTTTC TTTTC -TTTC TTTTC CTTTC TGTTTC GTTTTG TTTGTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC T-TTTC -TTTTC TTT-TC
7741778 -TTTC TTTT- TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTT
7741795 ATTTATTTGT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
4 10 0.20
5 30 0.61
6 8 0.16
7 1 0.02
ACGTcount: A:0.00, C:0.17, G:0.06, T:0.77
Consensus pattern (5 bp):
TTTTC
Done.