Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 24 of 145
Found at i:7744550 original size:3 final size:3
Alignment explanation
Indices: 7744542--7744636 Score: 154
Period size: 3 Copynumber: 31.7 Consensus size: 3
7744532 GATTTACTAT
* * *
7744542 TTC TTC TTC TTC TTC TTT TTC TTC TTC TTC TCC TTC TTC TTC TTC TCC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
*
7744590 TTC TTC TTC TTC TCC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TT
7744637 TTCACACTTT
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 84 1.00
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (3 bp):
TTC
Found at i:7748087 original size:6 final size:5
Alignment explanation
Indices: 7748065--7748124 Score: 52
Period size: 5 Copynumber: 11.8 Consensus size: 5
7748055 TTCTTTCCCT
* *
7748065 TTTTC TTTTC -TTTC TTTTC CTTTC TGTTTC GTTTTGC TTGTC -TTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC T-TTTC -TTTT-C TTTTC TTTTC
*
7748111 TTTTT TTTTC TTTT
1 TTTTC TTTTC TTTT
7748125 ATTTATTTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
4 7 0.16
5 25 0.57
6 10 0.23
7 2 0.05
ACGTcount: A:0.00, C:0.18, G:0.07, T:0.75
Consensus pattern (5 bp):
TTTTC
Found at i:7748631 original size:44 final size:43
Alignment explanation
Indices: 7748591--7748713 Score: 194
Period size: 44 Copynumber: 2.8 Consensus size: 43
7748581 TAAAAAAATA
*
7748591 AATTTGAAAAGAGGAGAAGATAATCTTGAGTTGTTGAAAAAAG
1 AATTTAAAAAGAGGAGAAGATAATCTTGAGTTGTTGAAAAAAG
7748634 AATTTAAAAAAGAGGAGAAGATAATCTT-AGATTGTTGAAAAAAG
1 AATTT-AAAAAGAGGAGAAGATAATCTTGAG-TTGTTGAAAAAAG
* *
7748678 AATTTAAAAAGAGGAGATGATAATCTTGGGTTGTTG
1 AATTTAAAAAGAGGAGAAGATAATCTTGAGTTGTTG
7748714 GATTTACCCT
Statistics
Matches: 74, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
43 34 0.46
44 40 0.54
ACGTcount: A:0.46, C:0.02, G:0.24, T:0.28
Consensus pattern (43 bp):
AATTTAAAAAGAGGAGAAGATAATCTTGAGTTGTTGAAAAAAG
Found at i:7749214 original size:9 final size:9
Alignment explanation
Indices: 7749200--7749226 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
7749190 ATTCCAAAAG
7749200 GGTTGGATT
1 GGTTGGATT
7749209 GGTTGGATT
1 GGTTGGATT
7749218 GGTTGGATT
1 GGTTGGATT
7749227 AAAATTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.00, G:0.44, T:0.44
Consensus pattern (9 bp):
GGTTGGATT
Found at i:7753857 original size:39 final size:40
Alignment explanation
Indices: 7753772--7753858 Score: 101
Period size: 39 Copynumber: 2.2 Consensus size: 40
7753762 GCAATTGAAA
* *
7753772 TGAATTGATTTAGTATATAATGAATTTATTGAATTTATAT
1 TGAATTGAATTAGTATATAATGAATATATTGAATTTATAT
*
7753812 TG-ATTGAATTGGTATATATATTGAATATATTG-A-TTAT-T
1 TGAATTGAATTAGTATATA-A-TGAATATATTGAATTTATAT
7753850 TGAATTGAA
1 TGAATTGAA
7753859 ATGAATATTG
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
38 3 0.07
39 24 0.59
40 4 0.10
41 10 0.24
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.48
Consensus pattern (40 bp):
TGAATTGAATTAGTATATAATGAATATATTGAATTTATAT
Found at i:7754035 original size:41 final size:39
Alignment explanation
Indices: 7753978--7754113 Score: 152
Period size: 40 Copynumber: 3.5 Consensus size: 39
7753968 CTACTTCGAG
7753978 TCGATGAGACACTGGGTGTCAATTTACTACTTCGGATTAAT
1 TCGATGAGACACTGGGTGTCAA-TTA-TACTTCGGATTAAT
* * * *
7754019 TCGATGAGGCACTGGGTGCCAATT-TACTTCGGTTTAAC
1 TCGATGAGACACTGGGTGTCAATTATACTTCGGATTAAT
*
7754057 T-GATGAGACACTGGGTGTCAAGTTATTACTTCGAATT-AT
1 TCGATGAGACACTGGGTGTCAA-TTA-TACTTCGGATTAAT
* *
7754096 CCGATGAGGCACTGGGTG
1 TCGATGAGACACTGGGTG
7754114 CCAAACTGGT
Statistics
Matches: 80, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
37 18 0.22
38 15 0.19
39 1 0.01
40 26 0.32
41 20 0.25
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (39 bp):
TCGATGAGACACTGGGTGTCAATTATACTTCGGATTAAT
Found at i:7760368 original size:51 final size:51
Alignment explanation
Indices: 7760288--7760693 Score: 479
Period size: 51 Copynumber: 8.0 Consensus size: 51
7760278 GGAAGGGTCC
* * *
7760288 ATGAACTGGCTATGCAAAGTATGTGCGTACTGATTATGTAAAGTTCTATGC
1 ATGAACTGTCTATGCAAAGTATATGCGTACTGATTATGTAAAGTTCTATGT
* * * * *
7760339 ATGAACTATTTATACAAAGTATATACGTACTAATTATGTAAAGTTCTATGT
1 ATGAACTGTCTATGCAAAGTATATGCGTACTGATTATGTAAAGTTCTATGT
* * * *
7760390 ATGAAGTGTGTATGCAAAGTATGTGCATACTGATTATGTAAAGTTCTATGT
1 ATGAACTGTCTATGCAAAGTATATGCGTACTGATTATGTAAAGTTCTATGT
* * * *
7760441 ATGAACTATCTATTCAAAGTATATGCGTATTGATTATGTAAAGTTTTATGT
1 ATGAACTGTCTATGCAAAGTATATGCGTACTGATTATGTAAAGTTCTATGT
* * * * *
7760492 GTGAACTGTCTGTGGAAAGTGTATGCGTACTGATTATGTAAAGTTTTATGT
1 ATGAACTGTCTATGCAAAGTATATGCGTACTGATTATGTAAAGTTCTATGT
* * * *
7760543 ATGAATTGTCTATGCAAAGTATGTGCATACTGATTATGTAAAGTTCTATAT
1 ATGAACTGTCTATGCAAAGTATATGCGTACTGATTATGTAAAGTTCTATGT
* * * * * * * *
7760594 GTGAACTGTCTATACAAAGTGTGTGCGTACTAATCACGTAAAGTTATATGT
1 ATGAACTGTCTATGCAAAGTATATGCGTACTGATTATGTAAAGTTCTATGT
* * * *
7760645 GTGAAATGTCTATGCAAAGTATATACGTACTGATTATGTAAAGTACTAT
1 ATGAACTGTCTATGCAAAGTATATGCGTACTGATTATGTAAAGTTCTAT
7760694 ATGCGAACTA
Statistics
Matches: 295, Mismatches: 60, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 295 1.00
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (51 bp):
ATGAACTGTCTATGCAAAGTATATGCGTACTGATTATGTAAAGTTCTATGT
Found at i:7760534 original size:24 final size:24
Alignment explanation
Indices: 7760298--7760535 Score: 72
Period size: 24 Copynumber: 9.4 Consensus size: 24
7760288 ATGAACTGGC
* *
7760298 TATGCAAAGTATGTGCGTACTGAT
1 TATGTAAAGTATATGCGTACTGAT
* *
7760322 TATGTAAAGTTCTATGCATGAACT-ATT
1 TATGTAAAG-TATATGC--GTACTGA-T
** * *
7760349 TATACAAAGTATATACGTACTAAT
1 TATGTAAAGTATATGCGTACTGAT
* * * *
7760373 TATGTAAAGTTCTATGTATGAAGTG-T
1 TATGTAAAG-TATATG--CGTACTGAT
* * *
7760399 GTATGCAAAGTATGTGCATACTGAT
1 -TATGTAAAGTATATGCGTACTGAT
* * *
7760424 TATGTAAAGTTCTATGTATGAACT-AT
1 TATGTAAAG-TATATG--CGTACTGAT
*
7760450 CTAT-TCAAAGTATATGCGTATTGAT
1 -TATGT-AAAGTATATGCGTACTGAT
* *
7760475 TATGTAAAGTTTTATGTGTGAACTG-T
1 TATGTAAAG-TATATGCGT--ACTGAT
* * *
7760501 CTGTGGAAAGTGTATGCGTACTGAT
1 -TATGTAAAGTATATGCGTACTGAT
7760526 TATGTAAAGT
1 TATGTAAAGT
7760536 TTTATGTATG
Statistics
Matches: 149, Mismatches: 43, Indels: 44
0.63 0.18 0.19
Matches are distributed among these distances:
24 53 0.36
25 26 0.17
26 27 0.18
27 43 0.29
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (24 bp):
TATGTAAAGTATATGCGTACTGAT
Found at i:7760566 original size:153 final size:153
Alignment explanation
Indices: 7760288--7760693 Score: 551
Period size: 153 Copynumber: 2.7 Consensus size: 153
7760278 GGAAGGGTCC
* * * ** * * *
7760288 ATGAACTGGCTATGCAAAGTATGTGCGTACTGATTATGTAAAGTTCTATGCATGAACTATTTATA
1 ATGAACTGTCTATACAAAGTATGTGCGTACTGATTATGTAAAGTTATATGTGTGAACTGTCTATG
* *
7760353 CAAAGTATATACGTACTAATTATGTAAAGTTCTATGTATGAAGTGTGTATGCAAAGTATGTGCAT
66 CAAAGTATATACGTACTGATTATGTAAAGTTCTATGTATGAAGTGTCTATGCAAAGTATGTGCAT
*
7760418 ACTGATTATGTAAAGTTCTATGT
131 ACTGATTATGTAAAGTTCTATAT
* * * * * *
7760441 ATGAACTATCTATTCAAAGTATATGCGTATTGATTATGTAAAGTTTTATGTGTGAACTGTCTGTG
1 ATGAACTGTCTATACAAAGTATGTGCGTACTGATTATGTAAAGTTATATGTGTGAACTGTCTATG
* * * * *
7760506 GAAAGTGTATGCGTACTGATTATGTAAAGTTTTATGTATGAATTGTCTATGCAAAGTATGTGCAT
66 CAAAGTATATACGTACTGATTATGTAAAGTTCTATGTATGAAGTGTCTATGCAAAGTATGTGCAT
7760571 ACTGATTATGTAAAGTTCTATAT
131 ACTGATTATGTAAAGTTCTATAT
* * * * * *
7760594 GTGAACTGTCTATACAAAGTGTGTGCGTACTAATCACGTAAAGTTATATGTGTGAAATGTCTATG
1 ATGAACTGTCTATACAAAGTATGTGCGTACTGATTATGTAAAGTTATATGTGTGAACTGTCTATG
*
7760659 CAAAGTATATACGTACTGATTATGTAAAGTACTAT
66 CAAAGTATATACGTACTGATTATGTAAAGTTCTAT
7760694 ATGCGAACTA
Statistics
Matches: 216, Mismatches: 37, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
153 216 1.00
ACGTcount: A:0.33, C:0.10, G:0.20, T:0.37
Consensus pattern (153 bp):
ATGAACTGTCTATACAAAGTATGTGCGTACTGATTATGTAAAGTTATATGTGTGAACTGTCTATG
CAAAGTATATACGTACTGATTATGTAAAGTTCTATGTATGAAGTGTCTATGCAAAGTATGTGCAT
ACTGATTATGTAAAGTTCTATAT
Found at i:7764474 original size:9 final size:9
Alignment explanation
Indices: 7764460--7764484 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
7764450 TGCTTACTGT
7764460 AGAGAAATA
1 AGAGAAATA
7764469 AGAGAAATA
1 AGAGAAATA
7764478 AGAGAAA
1 AGAGAAA
7764485 ATGATGCGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.24, T:0.08
Consensus pattern (9 bp):
AGAGAAATA
Found at i:7768941 original size:15 final size:15
Alignment explanation
Indices: 7768921--7768954 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
7768911 ACAACCTTTA
7768921 TAAATCACTATATAG
1 TAAATCACTATATAG
7768936 TAAATCACTATATAG
1 TAAATCACTATATAG
7768951 TAAA
1 TAAA
7768955 GTTTATATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.32
Consensus pattern (15 bp):
TAAATCACTATATAG
Found at i:7781797 original size:14 final size:15
Alignment explanation
Indices: 7781778--7781816 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
7781768 GAATTATAAC
7781778 TATTTAAATA-TTAT
1 TATTTAAATAGTTAT
7781792 TATTTAAATAGTTAT
1 TATTTAAATAGTTAT
*
7781807 AATATTAAAT
1 TAT-TTAAAT
7781817 TAATAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 10 0.45
15 6 0.27
16 6 0.27
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (15 bp):
TATTTAAATAGTTAT
Found at i:7783620 original size:22 final size:22
Alignment explanation
Indices: 7783590--7783632 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7783580 ACACCAAAAC
*
7783590 AGGCTTTTAGCGGCGTTTTTTT
1 AGGCCTTTAGCGGCGTTTTTTT
7783612 AGGCCTTTAGCGGCGTTTTTT
1 AGGCCTTTAGCGGCGTTTTTT
7783633 AGCGCCGCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.16, G:0.28, T:0.47
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGTTTTTTT
Found at i:7783753 original size:43 final size:42
Alignment explanation
Indices: 7783705--7784008 Score: 376
Period size: 43 Copynumber: 7.1 Consensus size: 42
7783695 TTATGAGAAA
* * * *
7783705 AAACGCCGCTATAGAACATAACCTTTAGCGGCGCTTCACCCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTA-TCAC
*
7783748 AAACGCCGCTAAAGATCATGACCTTTAGCGGCGCTTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTATCAC
* * * * *
7783790 AAACGCCGCTATAGATCATGACCTTTAGCGACGCTTTACCCAT
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTA-TCAC
* *
7783833 AAACGCCGCTAAAGATCATGACTTTTAGCGGCGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGC-TTTATCAC
*
7783876 AAACGCCGCGAAAGAACATGACCTTTAGCGGCGCTTTTACTCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGC-TTTA-TCAC
* * *
7783920 AAACGCCGCTAAAGACCATTACCTTTAGCGGTGCTTTTATCAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGC-TTTATCAC
*
7783963 AAACGCCGCTAAA-AACCATTACCTTTAGCGGCGCTTTTATCAC
1 AAACGCCGCTAAAGAA-CATGACCTTTAGCGGCGC-TTTATCAC
7784006 AAA
1 AAA
7784009 TGCCACTAGC
Statistics
Matches: 234, Mismatches: 23, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
42 40 0.17
43 151 0.65
44 43 0.18
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (42 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTATCAC
Found at i:7783960 original size:87 final size:86
Alignment explanation
Indices: 7783705--7783999 Score: 432
Period size: 87 Copynumber: 3.4 Consensus size: 86
7783695 TTATGAGAAA
* * *
7783705 AAACGCCGCTATAGAACATAACCTTTAGCGGCGCTTCACCCACAAACGCCGCTAAAGATCATGAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAGATCATGAC
7783770 CTTTAGCGGCGC-TTTATCAC
66 CTTTAGCGGCGCTTTTATCAC
* * * *
7783790 AAACGCCGCTATAGATCATGACCTTTAGCGACGCTTTACCCATAAACGCCGCTAAAGATCATGAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAGATCATGAC
*
7783855 TTTTAGCGGCGCTTTTATCAC
66 CTTTAGCGGCGCTTTTATCAC
* * * *
7783876 AAACGCCGCGAAAGAACATGACCTTTAGCGGCGCTTTTACTCACAAACGCCGCTAAAGACCATTA
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGC-TTTACCCACAAACGCCGCTAAAGATCATGA
*
7783941 CCTTTAGCGGTGCTTTTATCAC
65 CCTTTAGCGGCGCTTTTATCAC
*
7783963 AAACGCCGCTAAA-AACCATTACCTTTAGCGGCGCTTT
1 AAACGCCGCTAAAGAA-CATGACCTTTAGCGGCGCTTT
7784000 TATCACAAAT
Statistics
Matches: 189, Mismatches: 18, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
85 71 0.38
86 43 0.23
87 75 0.40
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (86 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTACCCACAAACGCCGCTAAAGATCATGAC
CTTTAGCGGCGCTTTTATCAC
Found at i:7783993 original size:130 final size:127
Alignment explanation
Indices: 7783705--7784008 Score: 387
Period size: 130 Copynumber: 2.4 Consensus size: 127
7783695 TTATGAGAAA
* * * * *
7783705 AAACGCCGCTATAGAACATAACCTTTAGCGGCGC-TTCACCCACAAACGCCGCTAAAGATCATGA
1 AAACGCCGCTA-AAAACATAACCTTTAGCGGCGCTTTTA-TCACAAACGCCGCGAAAGAACATGA
* * *
7783769 CCTTTAGCGGCGCTTTATCACAAACGCCGCTATAGATCATGACCTTTAGCGACGCTTTACCCAT
64 CCTTTAGCGGCGCTTTATCACAAACGCCGCTAAAGACCATGACCTTTAGCGACGCTTTACCCAC
* * *
7783833 AAACGCCGCTAAAGATCATGACTTTTAGCGGCGCTTTTATCACAAACGCCGCGAAAGAACATGAC
1 AAACGCCGCTAAA-AACATAACCTTTAGCGGCGCTTTTATCACAAACGCCGCGAAAGAACATGAC
* ** *
7783898 CTTTAGCGGCGCTTTTACTCACAAACGCCGCTAAAGACCATTACCTTTAGCGGTGCTTTTA-TCA
65 CTTTAGCGGCGC-TTTA-TCACAAACGCCGCTAAAGACCATGACCTTTAGCGACGC-TTTACCCA
7783962 C
127 C
*
7783963 AAACGCCGCTAAAAACCATTACCTTTAGCGGCGCTTTTATCACAAA
1 AAACGCCGCTAAAAA-CATAACCTTTAGCGGCGCTTTTATCACAAA
7784009 TGCCACTAGC
Statistics
Matches: 152, Mismatches: 18, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
127 1 0.01
128 63 0.41
129 8 0.05
130 76 0.50
131 4 0.03
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (127 bp):
AAACGCCGCTAAAAACATAACCTTTAGCGGCGCTTTTATCACAAACGCCGCGAAAGAACATGACC
TTTAGCGGCGCTTTATCACAAACGCCGCTAAAGACCATGACCTTTAGCGACGCTTTACCCAC
Found at i:7785227 original size:192 final size:190
Alignment explanation
Indices: 7784980--7785352 Score: 466
Period size: 192 Copynumber: 2.0 Consensus size: 190
7784970 AAAGGTCCCA
* * * *
7784980 AACTTGGTCTATTATGTTATTAACATCATAAAAAATCATCAATTACATCCTAATAACAATTTCAA
1 AACTTAGTCTATTATATTATTAACATCATAAAAAAACATCAATTACATCCTAATAACAATTCCAA
* * * * * *
7785045 CTCCAAAATT-GACTAAAGAAGCTTTGCAGGATATGA-AAACACAAGTGCATTTCCATTCAAGTA
66 CCCCAAAATTCAACTAAA-AAGCATTGCAGGATA-CACAAACACAAATGCATTTCCATTAAAGT-
** * * *
7785108 AATTGTTGTGTTGTAATCACAAAG-TTCAAATGAAAACCATGACTTGAACCCATAAAAATTTC
128 AATAATAGTGTTGTAATCACAAAGCTCCAAATGAAAACCATGACTTAAACCCATAAAAATTTC
* *
7785170 AACTTAGTCTATTGTATTCATTAACATCA-ACATAAAAACATCAATTACTTCCTAATAACAATTC
1 AACTTAGTCTATTATATT-ATTAACATCATA-A-AAAAACATCAATTACATCCTAATAACAATTC
* * **
7785234 CAACCCCAAAGTTCAATTAAAAAGCATTGCAGGATACACAAATGCAAATGCATTTCCATTAAAGT
63 CAACCCCAAAATTCAACTAAAAAGCATTGCAGGATACACAAACACAAATGCATTTCCATTAAAGT
*
7785299 AATAATAGTGTTTTAATCACAAAGCTCCAAATGAAAACCATGACTTAAACCCAT
128 AATAATAGTGTTGTAATCACAAAGCTCCAAATGAAAACCATGACTTAAACCCAT
7785353 TATAGATTAC
Statistics
Matches: 155, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
190 16 0.10
191 32 0.21
192 102 0.66
193 5 0.03
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.29
Consensus pattern (190 bp):
AACTTAGTCTATTATATTATTAACATCATAAAAAAACATCAATTACATCCTAATAACAATTCCAA
CCCCAAAATTCAACTAAAAAGCATTGCAGGATACACAAACACAAATGCATTTCCATTAAAGTAAT
AATAGTGTTGTAATCACAAAGCTCCAAATGAAAACCATGACTTAAACCCATAAAAATTTC
Found at i:7786084 original size:73 final size:72
Alignment explanation
Indices: 7785939--7786106 Score: 293
Period size: 72 Copynumber: 2.3 Consensus size: 72
7785929 CCGCATTTTA
7785939 AAAAACGCCGCTAAATTCCC-GAAAGCTCAGAAAACGGCGTCGTTCGGCTTAGGTTTTTTGCGGC
1 AAAAACGCCGCTAAA-TCCCTGAAAGCTCAGAAAACGGCGTCGTTCGGCTTAGGTTTTTTGCGGC
7786003 GCTTTCTC
65 GCTTTCTC
* *
7786011 AAAAACGCCACTAAATCCCTGAAAGCTCAGAAAACGGCGTCGTTGGGCTTAGGTTTTTTTGCGGC
1 AAAAACGCCGCTAAATCCCTGAAAGCTCAGAAAACGGCGTCGTTCGGCTTAGG-TTTTTTGCGGC
7786076 GCTTTCTC
65 GCTTTCTC
7786084 AAAAACGCCGCTAAATCCCTGAA
1 AAAAACGCCGCTAAATCCCTGAA
7786107 CATTAGCGGC
Statistics
Matches: 91, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
71 4 0.04
72 46 0.51
73 41 0.45
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (72 bp):
AAAAACGCCGCTAAATCCCTGAAAGCTCAGAAAACGGCGTCGTTCGGCTTAGGTTTTTTGCGGCG
CTTTCTC
Found at i:7789789 original size:13 final size:13
Alignment explanation
Indices: 7789771--7789797 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7789761 TTTCCAAAAA
7789771 TCAAATAATTTTT
1 TCAAATAATTTTT
7789784 TCAAATAATTTTT
1 TCAAATAATTTTT
7789797 T
1 T
7789798 TAAGAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.56
Consensus pattern (13 bp):
TCAAATAATTTTT
Found at i:7803817 original size:12 final size:12
Alignment explanation
Indices: 7803800--7803827 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7803790 ACCCTACAAA
7803800 ACATATAACTTG
1 ACATATAACTTG
7803812 ACATATAACTTG
1 ACATATAACTTG
7803824 ACAT
1 ACAT
7803828 GTCGCACGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.18, G:0.07, T:0.32
Consensus pattern (12 bp):
ACATATAACTTG
Found at i:7806271 original size:25 final size:23
Alignment explanation
Indices: 7806241--7806294 Score: 65
Period size: 25 Copynumber: 2.3 Consensus size: 23
7806231 ATCATTATTT
*
7806241 TTTATTAAATTAT-ATTTAAAATTA
1 TTTATTAAAATATGA-TT-AAATTA
7806265 TTATATTAAAATATGATTAAATTA
1 TT-TATTAAAATATGATTAAATTA
7806289 TTTATT
1 TTTATT
7806295 TTTATTTTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
23 4 0.15
24 10 0.37
25 12 0.44
26 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (23 bp):
TTTATTAAAATATGATTAAATTA
Found at i:7809961 original size:134 final size:135
Alignment explanation
Indices: 7809692--7809963 Score: 528
Period size: 134 Copynumber: 2.0 Consensus size: 135
7809682 ATAATGATAA
7809692 TTTAGCTTTGGTAAATAGATTACAAACTTTCACCCTAAAACATCATGAAGGGCATGAAAATTAAT
1 TTTAGCTTTGGTAAATAGATTACAAACTTTCACCCTAAAACATCATGAAGGGCATGAAAATTAAT
7809757 TAAAGAAAAAGTATTTTAATGAAATTAACTACTTGCTTTTACAAGTTTTAGCAATGCTTTTACAA
66 TAAAGAAAAAGTATTTTAATGAAATTAACTACTTGCTTTTACAAGTTTTAGCAATGCTTTTACAA
7809822 TTTTT
131 TTTTT
7809827 TTTAGCTTTGG-AAATAGATTACAAACTTTCACCCTAAAACATCATGAAGGGCATGAAAATTAAT
1 TTTAGCTTTGGTAAATAGATTACAAACTTTCACCCTAAAACATCATGAAGGGCATGAAAATTAAT
7809891 TAAAGAAAAAGTATTTTAATGAAATTAACCTACTTGCTTTTACAAGTTTTAGCAATGCTTTTACA
66 TAAAGAAAAAGTATTTTAATGAAATTAA-CTACTTGCTTTTACAAGTTTTAGCAATGCTTTTACA
7809956 ATTTTT
130 ATTTTT
7809962 TT
1 TT
7809964 GAAAGCCTAT
Statistics
Matches: 136, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
134 81 0.60
135 55 0.40
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37
Consensus pattern (135 bp):
TTTAGCTTTGGTAAATAGATTACAAACTTTCACCCTAAAACATCATGAAGGGCATGAAAATTAAT
TAAAGAAAAAGTATTTTAATGAAATTAACTACTTGCTTTTACAAGTTTTAGCAATGCTTTTACAA
TTTTT
Found at i:7814821 original size:36 final size:36
Alignment explanation
Indices: 7814713--7814843 Score: 129
Period size: 36 Copynumber: 3.6 Consensus size: 36
7814703 GCAAATCGGC
*
7814713 AGAAACTGTGAGCAAATCGGTC-GAAATAGAAAAGAAA
1 AGAAACTGGGAGCAAATCGG-CAGAAA-AGAAAAGAAA
* * **
7814750 AGAATCGGGGGAGCAAATCGGCAGAAAAGGCAAGAAA
1 AGAAAC-TGGGAGCAAATCGGCAGAAAAGAAAAGAAA
* *
7814787 ATAAACTGGGACCAAATCGGCAGAAAAGAAAAGAAA
1 AGAAACTGGGAGCAAATCGGCAGAAAAGAAAAGAAA
* * *
7814823 TGAAACAAGGAAGCAAATCGG
1 AGAAAC-TGGGAGCAAATCGG
7814844 ATGAAGGTGG
Statistics
Matches: 75, Mismatches: 16, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
36 30 0.40
37 29 0.39
38 16 0.21
ACGTcount: A:0.50, C:0.13, G:0.27, T:0.09
Consensus pattern (36 bp):
AGAAACTGGGAGCAAATCGGCAGAAAAGAAAAGAAA
Found at i:7822184 original size:26 final size:24
Alignment explanation
Indices: 7822155--7822216 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 24
7822145 GAGCAATGAT
7822155 CGGTAAGCTCAT-TCCGAGCTGAAGAA
1 CGGTAAGCTCATAT-CGAGCTG-A-AA
7822181 CGGTAAGCTC-TATCGAGCTGAAA
1 CGGTAAGCTCATATCGAGCTGAAA
*
7822204 CAGTAAGCTCATA
1 CGGTAAGCTCATA
7822217 AGATCTGATA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 11 0.33
24 3 0.09
25 8 0.24
26 11 0.33
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (24 bp):
CGGTAAGCTCATATCGAGCTGAAA
Found at i:7822937 original size:43 final size:43
Alignment explanation
Indices: 7822866--7823036 Score: 186
Period size: 43 Copynumber: 4.0 Consensus size: 43
7822856 CATAATAGCT
* * * *
7822866 CATA-CAATGCC-ATATCCCAGATATGGTCTTACATGTTATCA
1 CATATCAATGCCAATGTCCCAGACATGGTCTTACACGTAATCA
* * * * *
7822907 CATATCGATGCCACTGTCCCAGACAGGGTCTTATACGAAATCA
1 CATATCAATGCCAATGTCCCAGACATGGTCTTACACGTAATCA
* * *
7822950 TATAACAATGCCAATGTCTCAGACATGGTCTTACACGTAATCA
1 CATATCAATGCCAATGTCCCAGACATGGTCTTACACGTAATCA
* *
7822993 CA-ATACAATGCCAATGTCCCAGACATGGTCTTACATGTTATCA
1 CATAT-CAATGCCAATGTCCCAGACATGGTCTTACACGTAATCA
7823036 C
1 C
7823037 CTCTCAGTAA
Statistics
Matches: 105, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
41 4 0.04
42 7 0.07
43 94 0.90
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (43 bp):
CATATCAATGCCAATGTCCCAGACATGGTCTTACACGTAATCA
Found at i:7823004 original size:86 final size:85
Alignment explanation
Indices: 7822869--7823025 Score: 217
Period size: 86 Copynumber: 1.8 Consensus size: 85
7822859 AATAGCTCAT
* * * * *
7822869 ACAATGCCATATCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTGTCCCAGACAGG
1 ACAATGCCATATCCCAGACATGGTCTTACACGTAATCACATATCAATGCCAATGTCCCAGACAGG
7822934 GTCTTATACGAAATCATATA
66 GTCTTATACGAAATCATATA
* *
7822954 ACAATGCCAATGTCTCAGACATGGTCTTACACGTAATCACA-ATACAATGCCAATGTCCCAGACA
1 ACAATGCC-ATATCCCAGACATGGTCTTACACGTAATCACATAT-CAATGCCAATGTCCCAGACA
*
7823018 TGGTCTTA
64 GGGTCTTA
7823026 CATGTTATCA
Statistics
Matches: 62, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
85 10 0.16
86 52 0.84
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.27
Consensus pattern (85 bp):
ACAATGCCATATCCCAGACATGGTCTTACACGTAATCACATATCAATGCCAATGTCCCAGACAGG
GTCTTATACGAAATCATATA
Found at i:7825454 original size:115 final size:115
Alignment explanation
Indices: 7825244--7825460 Score: 301
Period size: 115 Copynumber: 1.9 Consensus size: 115
7825234 ACTAAAAGGG
* * ** * * *
7825244 ATTCGATAGTGAGTTATATGGCCTGTCGACATTGCCATATGACCCACACGGCCTAGACACACGGG
1 ATTCGACAGTGAGTTACACAGCCTGGCGAAATGGCCATATGACCCACACGGCCTAGACACACGGG
* * *
7825309 CGTGTTCTTGGCCGTGTGGATCCTGAGACTTAGTTTTAAAATTTTAAGAA
66 CGTGTCCTTGGCCGTGTGGACCCTGAGACTTAATTTTAAAATTTTAAGAA
* * *
7825359 ATTCGACAGTGAGTTACACAGCCTGGCGAAATGGCCATATGACCCACACGGCTTGGATACACGGG
1 ATTCGACAGTGAGTTACACAGCCTGGCGAAATGGCCATATGACCCACACGGCCTAGACACACGGG
7825424 CGTGTCCTTGGCCGTGTGGACCCT-AGGACTTAATTTT
66 CGTGTCCTTGGCCGTGTGGACCCTGA-GACTTAATTTT
7825461 TCTAAAAATT
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
114 1 0.01
115 87 0.99
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (115 bp):
ATTCGACAGTGAGTTACACAGCCTGGCGAAATGGCCATATGACCCACACGGCCTAGACACACGGG
CGTGTCCTTGGCCGTGTGGACCCTGAGACTTAATTTTAAAATTTTAAGAA
Found at i:7826332 original size:5 final size:5
Alignment explanation
Indices: 7826322--7826358 Score: 58
Period size: 5 Copynumber: 7.6 Consensus size: 5
7826312 CCCATTCTTT
*
7826322 TTTTA TTTTA TTTTA TTTTA TTTTA -TTTA CTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTT
7826359 GTTTATTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
4 4 0.13
5 26 0.87
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:7826342 original size:15 final size:14
Alignment explanation
Indices: 7826322--7826358 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
7826312 CCCATTCTTT
7826322 TTTTATTTTATTTTA
1 TTTTATTTTA-TTTA
7826337 TTTTATTTTATTTA
1 TTTTATTTTATTTA
*
7826351 CTTTATTT
1 TTTTATTT
7826359 GTTTATTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 11 0.52
15 10 0.48
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTATTTTATTTA
Found at i:7826372 original size:17 final size:17
Alignment explanation
Indices: 7826352--7826386 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
7826342 TTTTATTTAC
* *
7826352 TTTATTTGTTTATTATT
1 TTTACTTGTTTATCATT
7826369 TTTACTTGTTTATCATT
1 TTTACTTGTTTATCATT
7826386 T
1 T
7826387 ATTTTTAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.17, C:0.06, G:0.06, T:0.71
Consensus pattern (17 bp):
TTTACTTGTTTATCATT
Found at i:7829786 original size:14 final size:14
Alignment explanation
Indices: 7829764--7829793 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7829754 ATTGCGTTCG
7829764 TAGTGAAATTAGAT
1 TAGTGAAATTAGAT
*
7829778 TAGTTAAATTAGAT
1 TAGTGAAATTAGAT
7829792 TA
1 TA
7829794 AAATAATCAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (14 bp):
TAGTGAAATTAGAT
Found at i:7830822 original size:24 final size:24
Alignment explanation
Indices: 7830795--7830865 Score: 79
Period size: 24 Copynumber: 3.0 Consensus size: 24
7830785 CAGTGATACG
7830795 AGGTATTTGGTGATAGGGGTTCGT
1 AGGTATTTGGTGATAGGGGTTCGT
* * * * *
7830819 AGGTATCTAGTGAGAAGGATTCGT
1 AGGTATTTGGTGATAGGGGTTCGT
* *
7830843 ATGTGTTTGGTGATAGGGGTTCG
1 AGGTATTTGGTGATAGGGGTTCG
7830866 CAAGTTACAT
Statistics
Matches: 35, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.20, C:0.06, G:0.39, T:0.35
Consensus pattern (24 bp):
AGGTATTTGGTGATAGGGGTTCGT
Found at i:7830831 original size:41 final size:41
Alignment explanation
Indices: 7830754--7830831 Score: 111
Period size: 41 Copynumber: 1.9 Consensus size: 41
7830744 TAGGGTTCGC
* * *
7830754 AGGTATTTGGTGATAGGGGTTTGCATGTGTCCAGTGATACG
1 AGGTATTTGGTGATAGGGGTTCGCAGGTATCCAGTGATACG
* *
7830795 AGGTATTTGGTGATAGGGGTTCGTAGGTATCTAGTGA
1 AGGTATTTGGTGATAGGGGTTCGCAGGTATCCAGTGA
7830832 GAAGGATTCG
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 32 1.00
ACGTcount: A:0.21, C:0.08, G:0.37, T:0.35
Consensus pattern (41 bp):
AGGTATTTGGTGATAGGGGTTCGCAGGTATCCAGTGATACG
Found at i:7832595 original size:96 final size:96
Alignment explanation
Indices: 7832431--7832624 Score: 343
Period size: 96 Copynumber: 2.0 Consensus size: 96
7832421 TTACCTTAGT
*
7832431 TTCTCCTTGGCCGAATGCTGCAAAGCTTGGAAGCATTTTTCTTTGGTTTTATTAATGGTGGACGG
1 TTCTCCTTGGCCAAATGCTGCAAAGCTTGGAAGCATTTTTCTTTGGTTTTATTAATGGTGGACGG
7832496 TGCTTAAAGAAGAAGATAGTGGAATTTTCCA
66 TGCTTAAAGAAGAAGATAGTGGAATTTTCCA
** *
7832527 TTCTCCTTGGCCAAATGCTGCAAAGCTTGGAAGGGTTTTTCTTTGGTTTTATTAATGGTGGATGG
1 TTCTCCTTGGCCAAATGCTGCAAAGCTTGGAAGCATTTTTCTTTGGTTTTATTAATGGTGGACGG
*
7832592 TGCTTGAAGAAGAAGATAGTGGAATTTTCCA
66 TGCTTAAAGAAGAAGATAGTGGAATTTTCCA
7832623 TT
1 TT
7832625 ATCTCAAGCT
Statistics
Matches: 93, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 93 1.00
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37
Consensus pattern (96 bp):
TTCTCCTTGGCCAAATGCTGCAAAGCTTGGAAGCATTTTTCTTTGGTTTTATTAATGGTGGACGG
TGCTTAAAGAAGAAGATAGTGGAATTTTCCA
Found at i:7832680 original size:19 final size:20
Alignment explanation
Indices: 7832658--7832703 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
7832648 TTAATCTAAG
7832658 TAATTTAGTTTAATT-ACCT
1 TAATTTAGTTTAATTAACCT
* *
7832677 TAATTTGGTTTAATTAACTT
1 TAATTTAGTTTAATTAACCT
7832697 TAATTTA
1 TAATTTA
7832704 ATTATCATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.54
Consensus pattern (20 bp):
TAATTTAGTTTAATTAACCT
Found at i:7839686 original size:22 final size:21
Alignment explanation
Indices: 7839656--7839697 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
7839646 TGGGTCTATT
7839656 GTTATTGGGCTTG-TGGGTTAG
1 GTTATTGGGC-TGCTGGGTTAG
7839677 GTTAGTTGGGCTGCTGGGTTA
1 GTTA-TTGGGCTGCTGGGTTA
7839698 ATTGGGTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.10, C:0.07, G:0.43, T:0.40
Consensus pattern (21 bp):
GTTATTGGGCTGCTGGGTTAG
Found at i:7840645 original size:45 final size:44
Alignment explanation
Indices: 7840582--7841264 Score: 867
Period size: 45 Copynumber: 15.3 Consensus size: 44
7840572 CCGCTTAGGG
* *
7840582 AGACAGGATCTG-TAATCTTCGATCTACTTTGCTGCCAATACAGGA
1 AGACAAGATCTGCT-ATCTTC-ATCTACTTCGCTGCCAATACAGGA
*
7840627 AGACAAGATCTACTATCTTCGATCTACTTCGCTGCCAATACAGGA
1 AGACAAGATCTGCTATCTTC-ATCTACTTCGCTGCCAATACAGGA
*
7840672 AGACAAGATCTGCTATCTTCAGTCTACTTCGCTGCCAATATAGGA
1 AGACAAGATCTGCTATCTTCA-TCTACTTCGCTGCCAATACAGGA
* * * ** *
7840717 AGACAAGATCTGCTATCTTCGACCTACTCCACT-CCTGCT-CAGGG
1 AGACAAGATCTGCTATCTTC-ATCTACTTCGCTGCC-AATACAGGA
* *
7840761 AGACAAGATCCGCTATCTTCAGTCTACTTTGCTGCCAATACAGGA
1 AGACAAGATCTGCTATCTTCA-TCTACTTCGCTGCCAATACAGGA
* *
7840806 AGACAAGACCTGCTATCTTCAGTCTACTTCGCTGTCAATACAGGA
1 AGACAAGATCTGCTATCTTCA-TCTACTTCGCTGCCAATACAGGA
7840851 AGACAAGATCTGCTATCTTCGATCTACTTCGCTGCCAATACAGGA
1 AGACAAGATCTGCTATCTTC-ATCTACTTCGCTGCCAATACAGGA
* *
7840896 AGACAAGACCTGCTATCTTCA-GT--TTCGCTGCCAATACAGGA
1 AGACAAGATCTGCTATCTTCATCTACTTCGCTGCCAATACAGGA
*
7840937 AGACAAGATCTGCTATCTTTGATCTACTTCGCTGCCAATACAGGA
1 AGACAAGATCTGCTATC-TTCATCTACTTCGCTGCCAATACAGGA
* *
7840982 AGACAAGACCTGCTATCTTCAATCTATTTCGCTGCCAATACAGGA
1 AGACAAGATCTGCTATCTTC-ATCTACTTCGCTGCCAATACAGGA
* *
7841027 AGACAAGA-CATGCTATCTTCAGTCTACTTCACTGCCAATACATGA
1 AGACAAGATC-TGCTATCTTCA-TCTACTTCGCTGCCAATACAGGA
* * * *
7841072 AGACAAGACCTACTATCTTTGATCTACTTCGCTGCCAATATAGGA
1 AGACAAGATCTGCTATC-TTCATCTACTTCGCTGCCAATACAGGA
* * *
7841117 AGGCAAGATCTGTTATTTTCAGTCTACTTCGCTGCCAATACAGGA
1 AGACAAGATCTGCTATCTTCA-TCTACTTCGCTGCCAATACAGGA
* *
7841162 AGACAAGACCTGCTATCTTCAGTGTACTTCGCTGCCAATACAGGA
1 AGACAAGATCTGCTATCTTCA-TCTACTTCGCTGCCAATACAGGA
* * *
7841207 AAACAAGACCTGCTATCTTTGATCTACTTCGCTGCCAATACAGGA
1 AGACAAGATCTGCTATC-TTCATCTACTTCGCTGCCAATACAGGA
7841252 AGACAAGATCTGC
1 AGACAAGATCTGC
7841265 GAATTCATTG
Statistics
Matches: 560, Mismatches: 59, Indels: 38
0.85 0.09 0.06
Matches are distributed among these distances:
41 34 0.06
42 3 0.01
43 3 0.01
44 41 0.07
45 469 0.84
46 10 0.02
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (44 bp):
AGACAAGATCTGCTATCTTCATCTACTTCGCTGCCAATACAGGA
Found at i:7844797 original size:84 final size:85
Alignment explanation
Indices: 7844655--7844830 Score: 327
Period size: 84 Copynumber: 2.1 Consensus size: 85
7844645 TAGCATCTGA
* *
7844655 TCCTTCATATCTTTTTAAAATTTGGTCAATTGCTCTTGCATCTGTATTTTTGCCTTTGTTCTAAT
1 TCCTTTATATCTTGTTAAAATTTGGTCAATTGCTCTTGCATCTGTATTTTTGCCTTTGTTCTAAT
7844720 CTCTCCAACCTTTGGTCCGT
66 CTCTCCAACCTTTGGTCCGT
7844740 TCCTTTATATCTTGTT-AAATTTGGTCAATTGCTCTTGCATCTGTATTTTTGCCTTTGTTCTAAT
1 TCCTTTATATCTTGTTAAAATTTGGTCAATTGCTCTTGCATCTGTATTTTTGCCTTTGTTCTAAT
7844804 CTCTCCAACCTTTGGTCCGT
66 CTCTCCAACCTTTGGTCCGT
7844824 TCCTTTA
1 TCCTTTA
7844831 GTCTTTGCTC
Statistics
Matches: 89, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
84 75 0.84
85 14 0.16
ACGTcount: A:0.16, C:0.23, G:0.12, T:0.49
Consensus pattern (85 bp):
TCCTTTATATCTTGTTAAAATTTGGTCAATTGCTCTTGCATCTGTATTTTTGCCTTTGTTCTAAT
CTCTCCAACCTTTGGTCCGT
Found at i:7844956 original size:19 final size:19
Alignment explanation
Indices: 7844914--7844957 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
7844904 TAATAGTCCT
**
7844914 TAATGCACATGATGTCATG
1 TAATGCACATGATGAAATG
7844933 TAATGCACATGCATGAAATG
1 TAATGCACATG-ATGAAATG
7844953 -AATGC
1 TAATGC
7844958 GAAAAAAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 16 0.73
20 6 0.27
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.27
Consensus pattern (19 bp):
TAATGCACATGATGAAATG
Found at i:7848469 original size:22 final size:21
Alignment explanation
Indices: 7848440--7848481 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
7848430 TTGGGCCATT
*
7848440 GTTATTGGGCTTGTGGGTTAG
1 GTTATTGGGCTGGTGGGTTAG
7848461 GTTAGTTGGGCTGGTGGGTTA
1 GTTA-TTGGGCTGGTGGGTTA
7848482 ATTGGGTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.10, C:0.05, G:0.45, T:0.40
Consensus pattern (21 bp):
GTTATTGGGCTGGTGGGTTAG
Found at i:7853841 original size:69 final size:69
Alignment explanation
Indices: 7853645--7854125 Score: 516
Period size: 69 Copynumber: 7.0 Consensus size: 69
7853635 AGTATTTTTT
* * * * * * **
7853645 TCATATGAAGATTCGCAGGTAAAGAGCCACAACCTCCAAAATAGTTAGTGAGAGCAAAGCTCTTA
1 TCATATTAAGGTTCGCAGGCAAAGAGCCGCAACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCA
*
7853710 ACTG
66 GCTG
* * * * * * *
7853714 TCATATTAAGATTCGCA-GCAAAGAGCCACAACCTCTAAAATAGTTAACGAGGGCAAAGCTCTCA
1 TCATATTAAGGTTCGCAGGCAAAGAGCCGCAACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCA
*
7853778 GTTG
66 GCTG
* * *
7853782 TCATATTAAGGTTCGCAGGCGAAGAGCCGCAACCTCCAAAACAATTAACGAGAGCAAAGCTCCCA
1 TCATATTAAGGTTCGCAGGCAAAGAGCCGCAACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCA
7853847 GCTG
66 GCTG
* * * * * *
7853851 TCATATTAAGGTTCGCAGACGAAGAGCTGCAACCTCCAAAATAGTTAGCAAAAGCAAAGCTCCCA
1 TCATATTAAGGTTCGCAGGCAAAGAGCCGCAACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCA
*
7853916 ACTG
66 GCTG
* * *
7853920 TCATATTAAGGATT-GTAGGCAAAAAGTCGCAACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCC
1 TCATATTAAGG-TTCGCAGGCAAAGAGCCGCAACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCC
*
7853984 AGCTA
65 AGCTG
* * * * * * * *
7853989 TCATATTAATGTTCTCAAGCAAAGAGCCGCAATCTCCAAAACAATTAGTGAGATCAAAGCTCCTA
1 TCATATTAAGGTTCGCAGGCAAAGAGCCGCAACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCA
* *
7854054 ACTA
66 GCTG
* * * * * *
7854058 TAATATTAAGGTTTGCAGGCAAAGAGCCACAACCTCCAAGACAGTTAGCGAGAGCAAAACTCTCA
1 TCATATTAAGGTTCGCAGGCAAAGAGCCGCAACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCA
7854123 GCT
66 GCT
7854126 TGTTATCTTT
Statistics
Matches: 345, Mismatches: 64, Indels: 6
0.83 0.15 0.01
Matches are distributed among these distances:
68 61 0.18
69 282 0.82
70 2 0.01
ACGTcount: A:0.37, C:0.23, G:0.19, T:0.20
Consensus pattern (69 bp):
TCATATTAAGGTTCGCAGGCAAAGAGCCGCAACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCA
GCTG
Found at i:7857510 original size:3 final size:3
Alignment explanation
Indices: 7857502--7857578 Score: 145
Period size: 3 Copynumber: 25.7 Consensus size: 3
7857492 GAGACTATCT
7857502 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
7857550 TAA TAA CAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
7857579 CACAACTGCT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 72 1.00
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:7861974 original size:31 final size:31
Alignment explanation
Indices: 7861938--7862006 Score: 104
Period size: 31 Copynumber: 2.2 Consensus size: 31
7861928 TTTTAACGTG
*
7861938 TATAATTGAATAAAAA-TTATATTTTTATGTA
1 TATAATTGAATAAAAATTTA-AATTTTATGTA
7861969 TATAATTGAATAAAAATTTAAATTTTATGTA
1 TATAATTGAATAAAAATTTAAATTTTATGTA
*
7862000 CATAATT
1 TATAATT
7862007 ATACTAAATC
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
31 32 0.91
32 3 0.09
ACGTcount: A:0.46, C:0.01, G:0.06, T:0.46
Consensus pattern (31 bp):
TATAATTGAATAAAAATTTAAATTTTATGTA
Found at i:7883556 original size:31 final size:31
Alignment explanation
Indices: 7883517--7883586 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
7883507 CACTAAACTG
* * * *
7883517 AAAA-TTTTCTTTTAAGTTACTGAACTATTT
1 AAAAGTTTTCATTTAAGTCACTAAACTATTC
7883547 AAAAGTTTTCATTTAAGTCACTAAACTATTC
1 AAAAGTTTTCATTTAAGTCACTAAACTATTC
7883578 AAAAGTTTT
1 AAAAGTTTT
7883587 TAAGTCACTA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
30 4 0.11
31 31 0.89
ACGTcount: A:0.37, C:0.11, G:0.07, T:0.44
Consensus pattern (31 bp):
AAAAGTTTTCATTTAAGTCACTAAACTATTC
Found at i:7883588 original size:27 final size:28
Alignment explanation
Indices: 7883526--7883596 Score: 81
Period size: 31 Copynumber: 2.5 Consensus size: 28
7883516 GAAAATTTTC
* * *
7883526 TTTTAAGTTACTGAACTATTTAAAAGTTT
1 TTTTAAGTCACTAAACTATTCAAAAG-TT
7883555 TCATTTAAGTCACTAAACTATTCAAAAG-T
1 T--TTTAAGTCACTAAACTATTCAAAAGTT
7883584 TTTTAAGTCACTA
1 TTTTAAGTCACTA
7883597 GGTTGTTAAG
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
27 12 0.32
29 3 0.08
31 22 0.59
ACGTcount: A:0.37, C:0.13, G:0.08, T:0.42
Consensus pattern (28 bp):
TTTTAAGTCACTAAACTATTCAAAAGTT
Found at i:7884238 original size:18 final size:17
Alignment explanation
Indices: 7884215--7884276 Score: 52
Period size: 18 Copynumber: 3.2 Consensus size: 17
7884205 ATAATCTTAA
7884215 AATTCAAGATTTTTAATT
1 AATTCAA-ATTTTTAATT
*
7884233 AATTCAAATTTATTATTT
1 AATTCAAATTT-TTAATT
7884251 GAATATCTAAAATTTTTAATTT
1 -AAT-TC--AAATTTTTAA-TT
7884273 AATT
1 AATT
7884277 TTAATTGCCT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
17 4 0.11
18 12 0.33
19 3 0.08
20 3 0.08
21 6 0.17
22 8 0.22
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.52
Consensus pattern (17 bp):
AATTCAAATTTTTAATT
Found at i:7884674 original size:25 final size:25
Alignment explanation
Indices: 7884627--7884692 Score: 62
Period size: 25 Copynumber: 2.6 Consensus size: 25
7884617 TAATAAATAT
*
7884627 ATTTTTATTTAAATTTAACTATAAA
1 ATTTTTATTTAAATGTAACTATAAA
* *
7884652 ATTTTTATATT-AATGTAATTATATA
1 ATTTTTAT-TTAAATGTAACTATAAA
*
7884677 TTTTATTATTTTAAAT
1 ATTT-TTA-TTTAAAT
7884693 AGTAGTATTG
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
25 22 0.67
26 7 0.21
27 4 0.12
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.58
Consensus pattern (25 bp):
ATTTTTATTTAAATGTAACTATAAA
Found at i:7891166 original size:18 final size:18
Alignment explanation
Indices: 7891143--7891180 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
7891133 AGTCCGTAAA
7891143 TATTAATTATTTAATATT
1 TATTAATTATTTAATATT
7891161 TATTAATTATTTAATATT
1 TATTAATTATTTAATATT
7891179 TA
1 TA
7891181 CTAGGTCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TATTAATTATTTAATATT
Found at i:7896946 original size:20 final size:20
Alignment explanation
Indices: 7896908--7896946 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
7896898 AGGGACTAAA
*
7896908 GTGTATAAATTTTTAAATTG
1 GTGTATAAATTTCTAAATTG
7896928 GTGTA-AAATTTCTATAATT
1 GTGTATAAATTTCTA-AATT
7896947 ATGGACATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.36, C:0.03, G:0.13, T:0.49
Consensus pattern (20 bp):
GTGTATAAATTTCTAAATTG
Found at i:7906525 original size:16 final size:16
Alignment explanation
Indices: 7906506--7906550 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
7906496 AATTTTTAAA
7906506 AATTTTAAAAATATAT
1 AATTTTAAAAATATAT
* * *
7906522 AATTTTAATAATTTTT
1 AATTTTAAAAATATAT
*
7906538 AATTTTTAAAATA
1 AATTTTAAAAATA
7906551 GTTTTTATAT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
AATTTTAAAAATATAT
Found at i:7919052 original size:43 final size:43
Alignment explanation
Indices: 7918987--7919111 Score: 164
Period size: 43 Copynumber: 2.9 Consensus size: 43
7918977 GACGCTTACA
*
7918987 GAAAAAACGCCGCCAAAGATCATGTTCTTTAGCGG-GACT-AAG
1 GAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG-CTCAAG
* * **
7919029 GAAATAAACGCCGCTAAAGATCATGTTCTCTAGTGGCGCTCGGG
1 GAAA-AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTCAAG
*
7919073 GAAAAACCGCCGCTAAAGATCATGTTCTTTAGCGGCGCT
1 GAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCT
7919112 GCGCTTGGTC
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
42 4 0.06
43 62 0.86
44 6 0.08
ACGTcount: A:0.30, C:0.23, G:0.25, T:0.22
Consensus pattern (43 bp):
GAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTCAAG
Found at i:7919631 original size:21 final size:21
Alignment explanation
Indices: 7919607--7919696 Score: 99
Period size: 21 Copynumber: 4.3 Consensus size: 21
7919597 GATTCTATCG
* *
7919607 CTGCTTCTCTCGCTGCGGATT
1 CTGCTTCTCTCGCTGCAGACT
* *
7919628 CTGCTTCTCTCGCTGTAGCCT
1 CTGCTTCTCTCGCTGCAGACT
* *
7919649 CTGCTTCTCTCGCTGTAGCCT
1 CTGCTTCTCTCGCTGCAGACT
* * *
7919670 CTGCTTCCCTCGCTGCCGCCT
1 CTGCTTCTCTCGCTGCAGACT
7919691 CTGCTT
1 CTGCTT
7919697 TAAGTTGTTG
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 62 1.00
ACGTcount: A:0.03, C:0.40, G:0.20, T:0.37
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGACT
Found at i:7919673 original size:42 final size:42
Alignment explanation
Indices: 7919607--7919696 Score: 117
Period size: 42 Copynumber: 2.1 Consensus size: 42
7919597 GATTCTATCG
* * * *
7919607 CTGCTTCTCTCGCTGCGGATTCTGCTTCTCTCGCTGTAGCCT
1 CTGCTTCTCTCGCTGCAGACTCTGCTTCCCTCGCTGCAGCCT
* * *
7919649 CTGCTTCTCTCGCTGTAGCCTCTGCTTCCCTCGCTGCCGCCT
1 CTGCTTCTCTCGCTGCAGACTCTGCTTCCCTCGCTGCAGCCT
7919691 CTGCTT
1 CTGCTT
7919697 TAAGTTGTTG
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.03, C:0.40, G:0.20, T:0.37
Consensus pattern (42 bp):
CTGCTTCTCTCGCTGCAGACTCTGCTTCCCTCGCTGCAGCCT
Found at i:7928253 original size:41 final size:41
Alignment explanation
Indices: 7928118--7928399 Score: 184
Period size: 41 Copynumber: 6.8 Consensus size: 41
7928108 AGATTTTATT
** * *
7928118 ATTAGCGGCGCTTTCACAAAAAAACGCCGCTAAAAGAACACA-C
1 ATTAGCGGCGC-TT-ATTAAAAAACGCCGCT-AAAGACCAGAGC
* * * * *
7928161 AATAGCGGCG-TTTTTAAACAAGCGCCGCTAAATGA-CACAGT
1 ATTAGCGGCGCTTATTAAA-AAACGCCGCTAAA-GACCAGAGC
* * * * *
7928202 ATTACCGGCGCTT-TTCCAAAAATGCCGCTAATGACCAGATC
1 ATTAGCGGCGCTTATT-AAAAAACGCCGCTAAAGACCAGAGC
* *
7928243 ATTAGTGGCGCTTATTAAAAAACGCCGCTAAAGGCCAGAGC
1 ATTAGCGGCGCTTATTAAAAAACGCCGCTAAAGACCAGAGC
* *
7928284 ATTAGCGGCGCTTA-TAAGAAAACGCCGCTAAAGGCTAGAGC
1 ATTAGCGGCGCTTATTAA-AAAACGCCGCTAAAGACCAGAGC
* ** * *
7928325 ATTAGCGGCGC-T-TTACGAAAATCGCCGCTAAAAGGTCGGAGA
1 ATTAGCGGCGCTTATTA--AAAAACGCCGCT-AAAGACCAGAGC
* *
7928367 ATTAGCGGCGATT-TGTCAAAAACGCCGCTAAAG
1 ATTAGCGGCGCTTAT-TAAAAAACGCCGCTAAAG
7928400 GCCCAAAAAT
Statistics
Matches: 193, Mismatches: 32, Indels: 30
0.76 0.13 0.12
Matches are distributed among these distances:
40 18 0.09
41 127 0.66
42 36 0.19
43 11 0.06
44 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.23, T:0.20
Consensus pattern (41 bp):
ATTAGCGGCGCTTATTAAAAAACGCCGCTAAAGACCAGAGC
Found at i:7928293 original size:82 final size:79
Alignment explanation
Indices: 7928118--7928399 Score: 215
Period size: 82 Copynumber: 3.4 Consensus size: 79
7928108 AGATTTTATT
* * * * *
7928118 ATTAGCGGCGCTTTCACAAAAAAACGCCGCTAAAAGAACACA-CAATAGCGGCGTTTTTAAACAA
1 ATTAGCGGCGCTTT-TC--AAAAACGCCGCT-AAAGACCAGAGCATTAGCGGCG-CTTTAAA-AA
* * * *
7928182 GCGCCGCTAAATGACACAGT
60 ACGCCGCTAAAGGACAGAGA
* * * * *
7928202 ATTACCGGCGCTTTTCCAAAAATGCCGCTAATGACCAGATCATTAGTGGCGCTTATTAAAAAACG
1 ATTAGCGGCGCTTTT-CAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGC-T-TTAAAAAACG
* *
7928267 CCGCTAAAGGCCAGAGC
63 CCGCTAAAGGACAGAGA
* * * * *
7928284 ATTAGCGGCGCTTATAAGAAAACGCCGCTAAAGGCTAGAGCATTAGCGGCGCTTTACGAAAATCG
1 ATTAGCGGCGCTTTTCA-AAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTA--AAAAACG
* *
7928349 CCGCTAAAAGGTCGGAGA
63 CCGCT-AAAGGACAGAGA
*
7928367 ATTAGCGGCGATTTGTCAAAAACGCCGCTAAAG
1 ATTAGCGGCGCTTT-TCAAAAACGCCGCTAAAG
7928400 GCCCAAAAAT
Statistics
Matches: 159, Mismatches: 30, Indels: 19
0.76 0.14 0.09
Matches are distributed among these distances:
80 3 0.02
81 9 0.06
82 90 0.57
83 41 0.26
84 16 0.10
ACGTcount: A:0.34, C:0.24, G:0.23, T:0.20
Consensus pattern (79 bp):
ATTAGCGGCGCTTTTCAAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTAAAAAACGCCG
CTAAAGGACAGAGA
Found at i:7933070 original size:21 final size:22
Alignment explanation
Indices: 7933035--7933079 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
7933025 AATTTTCCAA
7933035 AAAAATTATACAAATTAAT-TTT
1 AAAAATTATACAAA-TAATATTT
7933057 AAAAATTATA-AAATAATATTT
1 AAAAATTATACAAATAATATTT
7933078 AA
1 AA
7933080 TGTTTTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 4 0.18
21 8 0.36
22 10 0.45
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (22 bp):
AAAAATTATACAAATAATATTT
Found at i:7935360 original size:17 final size:18
Alignment explanation
Indices: 7935307--7935381 Score: 54
Period size: 17 Copynumber: 4.4 Consensus size: 18
7935297 AAATCTGAAC
7935307 TAAAA-TTT-AAATAATT
1 TAAAACTTTAAAATAATT
*
7935323 TAATAAC-TT-AAATAA-A
1 TAA-AACTTTAAAATAATT
* *
7935339 AAAAATTTTAAAAT-ATT
1 TAAAACTTTAAAATAATT
*
7935356 TAAAACTTTCAAATAATT
1 TAAAACTTTAAAATAATT
7935374 TAATAACT
1 TAA-AACT
7935382 ATCTTATAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 11
0.71 0.11 0.17
Matches are distributed among these distances:
15 2 0.04
16 8 0.18
17 25 0.56
18 6 0.13
19 4 0.09
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAACTTTAAAATAATT
Found at i:7943514 original size:13 final size:13
Alignment explanation
Indices: 7943498--7943523 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7943488 TAAATTGGAC
7943498 TCATAAATATTTA
1 TCATAAATATTTA
7943511 TCATAAATATTTA
1 TCATAAATATTTA
7943524 CGAAGTTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (13 bp):
TCATAAATATTTA
Found at i:7943775 original size:26 final size:27
Alignment explanation
Indices: 7943724--7943780 Score: 73
Period size: 26 Copynumber: 2.1 Consensus size: 27
7943714 AACAGAGAGC
* *
7943724 AAAACGAAAACAGGGGAGAAAGGAAAG
1 AAAAAGAAAACAGGGAAGAAAGGAAAG
7943751 AAAAAGAAAA-AGGGAAGGAAA-GAAAG
1 AAAAAGAAAACAGGGAA-GAAAGGAAAG
7943777 AAAA
1 AAAA
7943781 TTTGGGATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.67, C:0.04, G:0.30, T:0.00
Consensus pattern (27 bp):
AAAAAGAAAACAGGGAAGAAAGGAAAG
Found at i:7945758 original size:205 final size:207
Alignment explanation
Indices: 7945394--7945774 Score: 730
Period size: 205 Copynumber: 1.9 Consensus size: 207
7945384 GGTTGTTTCC
7945394 GTGCACAGGTTAGTAGAAAGCCAGTGTCCGGTCCAGCATCTAGAGCAATCCCGACCTCAGATAAA
1 GTGCACAGGTTAGTAGAAAGCCAGTGTCCGGTCCAGCATCTAGAGCAATCCCGACCTCAGATAAA
7945459 TTTTAGTGATGTAACTTTCTTTTGATAATGTGGCATGTATCTAGGTGATGTATTGATTAAAGTAT
66 TTTTAGTGATGTAACTTTCTTTTGATAATGTGGCATGTATCTAGGTGATGTATTGATTAAAGTAT
* *
7945524 GCTATGTATGTTATTTATTTGTGAATTAGTTATAAGTTATCTGATATGTCCAGTACTGCTCCGTA
131 GCTATGTATGTTATTTAGTTGTGAATTAGTTATAAGTTATCCGATATGTCCAGTACTGCTCCGTA
7945589 ACCCAGTTCCAG
196 ACCCAGTTCCAG
7945601 GTGCACAGG-T-GTAGAAAGCCAGTGTCCGGTCCAGCATCTAGAGCAATCCCGACCTCAGATAAA
1 GTGCACAGGTTAGTAGAAAGCCAGTGTCCGGTCCAGCATCTAGAGCAATCCCGACCTCAGATAAA
7945664 TTTTAGTGATGTAACTTTCTTTTGATAATGTGGCATGTATCTAGGTGATGTATTGATTAAAGTAT
66 TTTTAGTGATGTAACTTTCTTTTGATAATGTGGCATGTATCTAGGTGATGTATTGATTAAAGTAT
7945729 GCTATGTATGTTATTTAGTTGTGAATTAGTTATAAGTTATCCGATA
131 GCTATGTATGTTATTTAGTTGTGAATTAGTTATAAGTTATCCGATA
7945775 AGTCTGGTAA
Statistics
Matches: 172, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
205 162 0.94
206 1 0.01
207 9 0.05
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (207 bp):
GTGCACAGGTTAGTAGAAAGCCAGTGTCCGGTCCAGCATCTAGAGCAATCCCGACCTCAGATAAA
TTTTAGTGATGTAACTTTCTTTTGATAATGTGGCATGTATCTAGGTGATGTATTGATTAAAGTAT
GCTATGTATGTTATTTAGTTGTGAATTAGTTATAAGTTATCCGATATGTCCAGTACTGCTCCGTA
ACCCAGTTCCAG
Found at i:7947162 original size:101 final size:101
Alignment explanation
Indices: 7947042--7947239 Score: 281
Period size: 101 Copynumber: 2.0 Consensus size: 101
7947032 TCTTATTAGG
* * ** * *
7947042 TCGAGTTATAATTTGTGACAAATTAGAGCTTCTTTTCAATCTTTCTATCAACTTGTAGGTGAAAA
1 TCGAGTTATAAATTATGACAAATTAGAGCTTCTCCTCAATCCTTCTATCAACTTGTAGGAGAAAA
**
7947107 TGTGATATTTTGGAATCATAAA-AGTTAAAAGATAGA
66 TGTGATATCCTGGAATCATAAATA-TTAAAAGATAGA
*
7947143 TCGAGTTATAAATTATGACAAATTAGAGTTTCTCCTCAATCCTTCTATCAACTTGTAGGAGAAAA
1 TCGAGTTATAAATTATGACAAATTAGAGCTTCTCCTCAATCCTTCTATCAACTTGTAGGAGAAAA
* *
7947208 TGTGATCTCCTGGAATCCTAAATATTAAAAGA
66 TGTGATATCCTGGAATCATAAATATTAAAAGA
7947240 GTTGATAGGC
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
101 84 0.99
102 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (101 bp):
TCGAGTTATAAATTATGACAAATTAGAGCTTCTCCTCAATCCTTCTATCAACTTGTAGGAGAAAA
TGTGATATCCTGGAATCATAAATATTAAAAGATAGA
Found at i:7959247 original size:18 final size:18
Alignment explanation
Indices: 7959176--7959248 Score: 69
Period size: 18 Copynumber: 3.9 Consensus size: 18
7959166 TCTAGATGTA
*
7959176 ATTAAAATATTAT-AAATA
1 ATTAAAA-ATTATAAAATT
7959194 ATTATAAAATTATTAAAATT
1 ATTA-AAAATTA-TAAAATT
7959214 -TGTAACAAATTATAAAATT
1 AT-TAA-AAATTATAAAATT
*
7959233 ATTAAAAATTGTAAAA
1 ATTAAAAATTATAAAA
7959249 CTCTAAACAA
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
18 18 0.38
19 16 0.34
20 13 0.28
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (18 bp):
ATTAAAAATTATAAAATT
Found at i:7966296 original size:11 final size:11
Alignment explanation
Indices: 7966266--7966313 Score: 51
Period size: 11 Copynumber: 4.3 Consensus size: 11
7966256 TACAATATTC
*
7966266 AAATAATAAAAA
1 AAATAAT-AATA
*
7966278 AAATAATAGTA
1 AAATAATAATA
*
7966289 ACATAATAATA
1 AAATAATAATA
*
7966300 AAATAATAACA
1 AAATAATAATA
7966311 AAA
1 AAA
7966314 CAACAATAAT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
11 23 0.77
12 7 0.23
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.21
Consensus pattern (11 bp):
AAATAATAATA
Found at i:7966321 original size:25 final size:25
Alignment explanation
Indices: 7966293--7966361 Score: 79
Period size: 25 Copynumber: 2.8 Consensus size: 25
7966283 ATAGTAACAT
*
7966293 AATAATAAAATAATAACAAAACAAC
1 AATAATAAAATAATAAGAAAACAAC
* * **
7966318 AATAATGAAACAATAAGAAAACAGT
1 AATAATAAAATAATAAGAAAACAAC
7966343 AA-AA-AAAATAATAAGAAAA
1 AATAATAAAATAATAAGAAAA
7966362 TAGTAGCAAA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
23 13 0.35
24 2 0.05
25 22 0.59
ACGTcount: A:0.72, C:0.07, G:0.06, T:0.14
Consensus pattern (25 bp):
AATAATAAAATAATAAGAAAACAAC
Found at i:7966372 original size:23 final size:23
Alignment explanation
Indices: 7966272--7966366 Score: 70
Period size: 25 Copynumber: 4.1 Consensus size: 23
7966262 ATTCAAATAA
*
7966272 TAAAAAAAATAAT-AG-TAACA-
1 TAAAAAAAATAATAAGAAAACAG
* *
7966292 TAATAATAAAATAATAACAAAACAA
1 TAA-AA-AAAATAATAAGAAAACAG
* * *
7966317 CAATAATGAAACAATAAGAAAACAG
1 TAA-AA-AAAATAATAAGAAAACAG
*
7966342 TAAAAAAAATAATAAGAAAATAG
1 TAAAAAAAATAATAAGAAAACAG
7966365 TA
1 TA
7966367 GCAAAACACC
Statistics
Matches: 59, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
20 3 0.05
21 2 0.03
22 8 0.14
23 18 0.31
24 6 0.10
25 22 0.37
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.18
Consensus pattern (23 bp):
TAAAAAAAATAATAAGAAAACAG
Found at i:7968777 original size:15 final size:16
Alignment explanation
Indices: 7968757--7968790 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
7968747 TTCAATTAAG
7968757 TTAA-TTTTAAAATAT
1 TTAATTTTTAAAATAT
7968772 TTAATTTTTTAAAATAT
1 TTAA-TTTTTAAAATAT
7968789 TT
1 TT
7968791 TAAAACATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
17 13 0.76
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TTAATTTTTAAAATAT
Found at i:7974601 original size:9 final size:9
Alignment explanation
Indices: 7974587--7974631 Score: 58
Period size: 9 Copynumber: 5.1 Consensus size: 9
7974577 TTCAAATCAT
7974587 ATTCTCTCA
1 ATTCTCTCA
7974596 ATTCTCTCA
1 ATTCTCTCA
*
7974605 ATTC-AT-A
1 ATTCTCTCA
7974612 TATTCTCTCA
1 -ATTCTCTCA
7974622 ATTCTCTCA
1 ATTCTCTCA
7974631 A
1 A
7974632 GTATTTAGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
7 1 0.03
8 5 0.16
9 24 0.77
10 1 0.03
ACGTcount: A:0.27, C:0.29, G:0.00, T:0.44
Consensus pattern (9 bp):
ATTCTCTCA
Found at i:7974610 original size:24 final size:25
Alignment explanation
Indices: 7974578--7974631 Score: 83
Period size: 26 Copynumber: 2.2 Consensus size: 25
7974568 TCTTTTGCAT
7974578 TCAAATC-ATATTCTCTCAATTCTC
1 TCAAATCAATATTCTCTCAATTCTC
*
7974602 TCAATTCATATATTCTCTCAATTCTC
1 TCAAATCA-ATATTCTCTCAATTCTC
7974628 TCAA
1 TCAA
7974632 GTATTTAGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
24 6 0.22
26 21 0.78
ACGTcount: A:0.30, C:0.28, G:0.00, T:0.43
Consensus pattern (25 bp):
TCAAATCAATATTCTCTCAATTCTC
Found at i:7976302 original size:59 final size:59
Alignment explanation
Indices: 7976210--7976327 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
7976200 AAATTGGTGG
7976210 GTGTAACATTGATTTGGTCGAACCATTTGGAAGGTGTTTAAAGTTTTGTTTAACATTAT
1 GTGTAACATTGATTTGGTCGAACCATTTGGAAGGTGTTTAAAGTTTTGTTTAACATTAT
7976269 GTGTAACATTGATTTGGTCGAACCATTTGGAAGGTGTTTAAAGTTTTGTTTAACATTAT
1 GTGTAACATTGATTTGGTCGAACCATTTGGAAGGTGTTTAAAGTTTTGTTTAACATTAT
7976328 TTTAATGTGT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.27, C:0.08, G:0.22, T:0.42
Consensus pattern (59 bp):
GTGTAACATTGATTTGGTCGAACCATTTGGAAGGTGTTTAAAGTTTTGTTTAACATTAT
Found at i:7976638 original size:40 final size:40
Alignment explanation
Indices: 7976594--7976717 Score: 187
Period size: 40 Copynumber: 3.1 Consensus size: 40
7976584 TAAGCTTTCA
*
7976594 ATTGAATTGATTATGTTACCTTAAGCATGTTAAGAATGCC
1 ATTGAATTGATTATGTTACCGTAAGCATGTTAAGAATGCC
**
7976634 ATTGAATTGATTATGTTACCGTAAGCATGTTAACCATGCC
1 ATTGAATTGATTATGTTACCGTAAGCATGTTAAGAATGCC
* *
7976674 ATTGAATTGATTATGGTACCGTAAGCATG-TAAGACATGGC
1 ATTGAATTGATTATGTTACCGTAAGCATGTTAAGA-ATGCC
7976714 ATTG
1 ATTG
7976718 TACTGAAACC
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
39 3 0.04
40 73 0.96
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Consensus pattern (40 bp):
ATTGAATTGATTATGTTACCGTAAGCATGTTAAGAATGCC
Found at i:7976967 original size:23 final size:24
Alignment explanation
Indices: 7976924--7976980 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
7976914 TGTATTTACC
* *
7976924 TTTATTGGTAGCTTGTTTGCA-TA
1 TTTATTGGTAGCTTATCTGCACTA
7976947 TTTATTGGTAG-TATATCTGCACTA
1 TTTATTGGTAGCT-TATCTGCACTA
7976971 TTGTATTGGT
1 TT-TATTGGT
7976981 GGTTTATCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 1 0.03
23 17 0.59
24 4 0.14
25 7 0.24
ACGTcount: A:0.19, C:0.09, G:0.21, T:0.51
Consensus pattern (24 bp):
TTTATTGGTAGCTTATCTGCACTA
Found at i:7994097 original size:16 final size:16
Alignment explanation
Indices: 7994076--7994107 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
7994066 GTTTTGTTGC
*
7994076 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
7994092 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
7994108 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:7994307 original size:46 final size:43
Alignment explanation
Indices: 7994231--7994329 Score: 110
Period size: 46 Copynumber: 2.2 Consensus size: 43
7994221 AATAATAACA
* *
7994231 GATACACGGTGGATTCAGCACACAGCAACCACCCTTGGTAATCAAT
1 GATAC-CGGTGGATTCAGCACACAGAAACCA-CCTT-ATAATCAAT
* *
7994277 GATATCCGGTGCGA-TCAGCACATAGAAACCACCTTATAATTAAT
1 GATA-CCGGTG-GATTCAGCACACAGAAACCACCTTATAATCAAT
7994321 GATACCGGT
1 GATACCGGT
7994330 TCACATAGTA
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
43 5 0.11
44 11 0.23
45 4 0.09
46 24 0.51
47 3 0.06
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.22
Consensus pattern (43 bp):
GATACCGGTGGATTCAGCACACAGAAACCACCTTATAATCAAT
Found at i:7994395 original size:51 final size:51
Alignment explanation
Indices: 7994337--7994525 Score: 283
Period size: 51 Copynumber: 3.7 Consensus size: 51
7994327 GGTTCACATA
*
7994337 GTAGCCTGCACATAGTACTACACATGTGACCATCACTATCTGATAGACGTG
1 GTAGCCTGCACATAGTACTACACACGTGACCATCACTATCTGATAGACGTG
7994388 GTAGCCTGCACATAGTACTACACACGTGACCATCACTATCTGATAGACGTG
1 GTAGCCTGCACATAGTACTACACACGTGACCATCACTATCTGATAGACGTG
** * * * *
7994439 GTAGCCTGCACATAGTACTACACTTGCGACCTATCA-T-TCTGGTACACGTA
1 GTAGCCTGCACATAGTACTACACACGTGACC-ATCACTATCTGATAGACGTG
*
7994489 GTAGCCTGCACATAGTACTAGACACGTGACCATCACT
1 GTAGCCTGCACATAGTACTACACACGTGACCATCACT
7994526 TTCACTTTCA
Statistics
Matches: 125, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
49 4 0.03
50 38 0.30
51 79 0.63
52 4 0.03
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (51 bp):
GTAGCCTGCACATAGTACTACACACGTGACCATCACTATCTGATAGACGTG
Found at i:7994514 original size:101 final size:102
Alignment explanation
Indices: 7994337--7994525 Score: 301
Period size: 101 Copynumber: 1.9 Consensus size: 102
7994327 GGTTCACATA
* * *
7994337 GTAGCCTGCACATAGTACTACACATGTGACCATCACTATCTGATAGACGTGGTAGCCTGCACATA
1 GTAGCCTGCACATAGTACTACACATGCGACCATCACTATCTGATACACGTAGTAGCCTGCACATA
7994402 GTACTACACACGTGACCATCACTATCTGATAGACGTG
66 GTACTACACACGTGACCATCACTATCTGATAGACGTG
* *
7994439 GTAGCCTGCACATAGTACTACACTTGCGACCTATCA-T-TCTGGTACACGTAGTAGCCTGCACAT
1 GTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCTGATACACGTAGTAGCCTGCACAT
*
7994502 AGTACTAGACACGTGACCATCACT
65 AGTACTACACACGTGACCATCACT
7994526 TTCACTTTCA
Statistics
Matches: 80, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
101 46 0.57
102 30 0.38
103 4 0.05
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (102 bp):
GTAGCCTGCACATAGTACTACACATGCGACCATCACTATCTGATACACGTAGTAGCCTGCACATA
GTACTACACACGTGACCATCACTATCTGATAGACGTG
Found at i:7997161 original size:41 final size:41
Alignment explanation
Indices: 7997111--7997216 Score: 167
Period size: 41 Copynumber: 2.6 Consensus size: 41
7997101 TTAATTAAAA
*
7997111 CAGATTCACCAGCACTTAGCCTGCTAGGCTTAAAGCCTGATT
1 CAGA-TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATT
* *
7997153 TAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATT
*
7997194 CAGTTCACCGGCACTTAGCCTGC
1 CAGATCACCGGCACTTAGCCTGC
7997217 CCTGAATTGA
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
41 56 0.95
42 3 0.05
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATT
Found at i:8006533 original size:24 final size:22
Alignment explanation
Indices: 8006506--8006555 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
8006496 TCAAGTTGTA
8006506 TTTTAAAGTACCTTAATGGT-TAGT
1 TTTTAAAGTA-C-TAATGGTAT-GT
*
8006530 TTTTTAAGTACTAATGGTATGT
1 TTTTAAAGTACTAATGGTATGT
8006552 TTTT
1 TTTT
8006556 GTGTTACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 13 0.54
23 2 0.08
24 9 0.38
ACGTcount: A:0.26, C:0.06, G:0.16, T:0.52
Consensus pattern (22 bp):
TTTTAAAGTACTAATGGTATGT
Found at i:8006945 original size:16 final size:16
Alignment explanation
Indices: 8006926--8006956 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8006916 TATTTGAAGG
*
8006926 ATTTATTTATAATTTA
1 ATTTATCTATAATTTA
8006942 ATTTATCTATAATTT
1 ATTTATCTATAATTT
8006957 TGGAAATGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (16 bp):
ATTTATCTATAATTTA
Found at i:8030584 original size:22 final size:22
Alignment explanation
Indices: 8030556--8030598 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
8030546 AATCCACGTA
*
8030556 TTGGTATCTAAATTTTTTTTTT
1 TTGGTATCTAAACTTTTTTTTT
*
8030578 TTGGTATTTAAACTTTTTTTT
1 TTGGTATCTAAACTTTTTTTT
8030599 GGTCACAAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.05, G:0.09, T:0.67
Consensus pattern (22 bp):
TTGGTATCTAAACTTTTTTTTT
Found at i:8030907 original size:7 final size:7
Alignment explanation
Indices: 8030892--8030921 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
8030882 TATTTTTTCT
*
8030892 TTTTTCA
1 TTTTACA
8030899 TTTTACA
1 TTTTACA
8030906 TTTTACA
1 TTTTACA
8030913 TTTTACA
1 TTTTACA
8030920 TT
1 TT
8030922 ATTTTTTCTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.00, T:0.63
Consensus pattern (7 bp):
TTTTACA
Found at i:8032106 original size:3 final size:3
Alignment explanation
Indices: 8032098--8032135 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
8032088 ATTTATAGTC
8032098 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TC
8032136 CTCAAGTCTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.34, G:0.00, T:0.34
Consensus pattern (3 bp):
TCA
Found at i:8040680 original size:31 final size:32
Alignment explanation
Indices: 8040640--8040714 Score: 107
Period size: 31 Copynumber: 2.4 Consensus size: 32
8040630 TATGTAATTG
* *
8040640 AATAAATAATAATACATGATAAAGGAA-TAAA
1 AATACATAATAATACATGATAAAAGAATTAAA
8040671 AATACATAATAATACATGATAAAAGAATTAAA
1 AATACATAATAATACATGATAAAAGAATTAAA
* *
8040703 AAAACATTATAA
1 AATACATAATAA
8040715 AATAATGTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
31 25 0.64
32 14 0.36
ACGTcount: A:0.64, C:0.05, G:0.07, T:0.24
Consensus pattern (32 bp):
AATACATAATAATACATGATAAAAGAATTAAA
Found at i:8044742 original size:20 final size:20
Alignment explanation
Indices: 8044705--8044743 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8044695 ACAGATTCTA
*
8044705 TCAATTTAATCTTAATTTTG
1 TCAATTTAATATTAATTTTG
*
8044725 TCAATTTAATATTGATTTT
1 TCAATTTAATATTAATTTT
8044744 TAAAAATTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.08, G:0.05, T:0.56
Consensus pattern (20 bp):
TCAATTTAATATTAATTTTG
Found at i:8045477 original size:19 final size:20
Alignment explanation
Indices: 8045453--8045509 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
8045443 ATATTCATTT
*
8045453 ATTTATAAATATTTTTAT-A
1 ATTTATATATATTTTTATAA
* *
8045472 ATTTATATGTATTATTATAA
1 ATTTATATATATTTTTATAA
8045492 ATTCT-TATATATTTTTAT
1 ATT-TATATATATTTTTAT
8045510 TGAAAGATGA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 15 0.48
20 15 0.48
21 1 0.03
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (20 bp):
ATTTATATATATTTTTATAA
Found at i:8046689 original size:13 final size:13
Alignment explanation
Indices: 8046671--8046697 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8046661 TGGTTCATGT
8046671 TTTTAAGTATCTG
1 TTTTAAGTATCTG
8046684 TTTTAAGTATCTG
1 TTTTAAGTATCTG
8046697 T
1 T
8046698 CTTACCTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.15, T:0.56
Consensus pattern (13 bp):
TTTTAAGTATCTG
Found at i:8047338 original size:23 final size:24
Alignment explanation
Indices: 8047310--8047362 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
8047300 GAACAATACT
* *
8047310 AAATTTTTTT-TTTACCAACTTTA
1 AAATTTTTTTATTAACCAAATTTA
8047333 AAATTTTTTTATTAACCAAATTTA
1 AAATTTTTTTATTAACCAAATTTA
8047357 AAATTT
1 AAATTT
8047363 AAATATTAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
23 10 0.37
24 17 0.63
ACGTcount: A:0.38, C:0.09, G:0.00, T:0.53
Consensus pattern (24 bp):
AAATTTTTTTATTAACCAAATTTA
Found at i:8047369 original size:24 final size:24
Alignment explanation
Indices: 8047323--8047371 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
8047313 TTTTTTTTTT
* ***
8047323 ACCAACTTTAAAATTTTTTTATTA
1 ACCAAATTTAAAATTTAAATATTA
8047347 ACCAAATTTAAAATTTAAATATTA
1 ACCAAATTTAAAATTTAAATATTA
8047371 A
1 A
8047372 AATTTAATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.47, C:0.10, G:0.00, T:0.43
Consensus pattern (24 bp):
ACCAAATTTAAAATTTAAATATTA
Found at i:8047373 original size:14 final size:13
Alignment explanation
Indices: 8047350--8047384 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
8047340 TTTATTAACC
8047350 AAATTTAAAATTT
1 AAATTTAAAATTT
8047363 AAATATTAAAATTT
1 AAAT-TTAAAATTT
*
8047377 AATTTTAA
1 AAATTTAA
8047385 GTAAGGTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTTAAAATTT
Found at i:8049103 original size:28 final size:28
Alignment explanation
Indices: 8049041--8049104 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 28
8049031 ACCAATAAAA
*
8049041 GCCG-TTTTTTTAAATTTACTGAAATGG
1 GCCGATTTTTTTAAATTTACCGAAATGG
* *
8049068 GCCGATTTTTTTATTATTTACCGGAATGG
1 GCCGATTTTTTTA-AATTTACCGAAATGG
*
8049097 TCC-ATTTT
1 GCCGATTTT
8049105 CCGAGGAATC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
27 4 0.13
28 13 0.42
29 14 0.45
ACGTcount: A:0.22, C:0.14, G:0.17, T:0.47
Consensus pattern (28 bp):
GCCGATTTTTTTAAATTTACCGAAATGG
Found at i:8049340 original size:22 final size:22
Alignment explanation
Indices: 8049312--8049362 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
8049302 TTCTCTTAAA
* *
8049312 CTCTCAATTTCCTTTC-AAAAT
1 CTCTCAATTTCATTCCAAAAAT
8049333 CCTCTCAATTTCATTCCAAAAAT
1 -CTCTCAATTTCATTCCAAAAAT
8049356 CTCTCAA
1 CTCTCAA
8049363 ATCCATATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 21 0.81
23 5 0.19
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.37
Consensus pattern (22 bp):
CTCTCAATTTCATTCCAAAAAT
Found at i:8049424 original size:10 final size:10
Alignment explanation
Indices: 8049396--8049462 Score: 53
Period size: 10 Copynumber: 6.5 Consensus size: 10
8049386 CCTCAATTTC
8049396 ATTTTTTTAAA
1 ATTTTTTT-AA
**
8049407 ATAATTTTAA
1 ATTTTTTTAA
*
8049417 ATTTTTTTAT
1 ATTTTTTTAA
8049427 ATTTTTTTAA
1 ATTTTTTTAA
** *
8049437 TATAATCTTAA
1 -ATTTTTTTAA
*
8049448 ATTTTTTTAT
1 ATTTTTTTAA
8049458 ATTTT
1 ATTTT
8049463 CATCAATGGC
Statistics
Matches: 42, Mismatches: 13, Indels: 3
0.72 0.22 0.05
Matches are distributed among these distances:
10 29 0.69
11 13 0.31
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (10 bp):
ATTTTTTTAA
Found at i:8049431 original size:31 final size:31
Alignment explanation
Indices: 8049396--8049462 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
8049386 CCTCAATTTC
*
8049396 ATTTTTTTAAAATAATTTTAAATTTTTTTAT
1 ATTTTTTTAAAATAATCTTAAATTTTTTTAT
*
8049427 ATTTTTTTAATATAATCTTAAATTTTTTTAT
1 ATTTTTTTAAAATAATCTTAAATTTTTTTAT
8049458 ATTTT
1 ATTTT
8049463 CATCAATGGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (31 bp):
ATTTTTTTAAAATAATCTTAAATTTTTTTAT
Found at i:8049720 original size:94 final size:93
Alignment explanation
Indices: 8049566--8049750 Score: 316
Period size: 94 Copynumber: 2.0 Consensus size: 93
8049556 TATTTAAGAT
* * *
8049566 ATTTTTATTTATGTATTTTTAGATAATTATTAATTTATTATTTGTTATAAAAGTCTGAAGATCGG
1 ATTTTTAGTTATGCATTTTTAGATAATTATTAATTTATTATTTGTTATAAAAGTCAGAAGATCGG
*
8049631 GGATTGGAATGCAATATCTGGAATATTA
66 GGATTGGAATGCAATATCCGGAATATTA
8049659 ATTTATTAGTTATGCATTTTTAGATAATTATTAATTTATTATTTGTTATAAAAGTCAGAAGATCG
1 ATTT-TTAGTTATGCATTTTTAGATAATTATTAATTTATTATTTGTTATAAAAGTCAGAAGATCG
*
8049724 GGTATTGGAATGCAATATCCGGAATAT
65 GGGATTGGAATGCAATATCCGGAATAT
8049751 GCATGCTCCT
Statistics
Matches: 86, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
93 4 0.05
94 82 0.95
ACGTcount: A:0.34, C:0.05, G:0.16, T:0.44
Consensus pattern (93 bp):
ATTTTTAGTTATGCATTTTTAGATAATTATTAATTTATTATTTGTTATAAAAGTCAGAAGATCGG
GGATTGGAATGCAATATCCGGAATATTA
Found at i:8050855 original size:62 final size:63
Alignment explanation
Indices: 8050769--8050894 Score: 236
Period size: 62 Copynumber: 2.0 Consensus size: 63
8050759 GACCTTCGGC
8050769 CATTAGGTACGGATTGGCCTAAATACTGGTCCGAGTACACGGAAATGTGGGAAAATCGGCATGA
1 CATTAGGTAC-GATTGGCCTAAATACTGGTCCGAGTACACGGAAATGTGGGAAAATCGGCATGA
8050833 CATTAGGTAC-ATTGGCCTAAATACTGGTCCGAGTACACGGAAATGTGGGAAAATCGGCATGA
1 CATTAGGTACGATTGGCCTAAATACTGGTCCGAGTACACGGAAATGTGGGAAAATCGGCATGA
8050895 ATATCTACCT
Statistics
Matches: 62, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
62 52 0.84
64 10 0.16
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (63 bp):
CATTAGGTACGATTGGCCTAAATACTGGTCCGAGTACACGGAAATGTGGGAAAATCGGCATGA
Found at i:8058096 original size:3 final size:3
Alignment explanation
Indices: 8058088--8058116 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
8058078 TAATAGTAAT
8058088 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
8058117 AATAGTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:8068746 original size:18 final size:18
Alignment explanation
Indices: 8068723--8068784 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
8068713 AGGTATGTGA
8068723 ATATTTGTAAGTAATTTC
1 ATATTTGTAAGTAATTTC
* **
8068741 ATATTTATACAAGT-ATGTGA
1 ATATTTGT--AAGTAAT-TTC
8068761 ATATTTGTAAGTAATTTC
1 ATATTTGTAAGTAATTTC
*
8068779 AGATTT
1 ATATTT
8068785 ATGTTTAGAA
Statistics
Matches: 33, Mismatches: 7, Indels: 8
0.69 0.15 0.17
Matches are distributed among these distances:
18 17 0.52
19 4 0.12
20 12 0.36
ACGTcount: A:0.35, C:0.05, G:0.13, T:0.47
Consensus pattern (18 bp):
ATATTTGTAAGTAATTTC
Found at i:8068758 original size:38 final size:38
Alignment explanation
Indices: 8068707--8068786 Score: 142
Period size: 38 Copynumber: 2.1 Consensus size: 38
8068697 ATGCATAACC
* *
8068707 TTATACAGGTATGTGAATATTTGTAAGTAATTTCATAT
1 TTATACAAGTATGTGAATATTTGTAAGTAATTTCAGAT
8068745 TTATACAAGTATGTGAATATTTGTAAGTAATTTCAGAT
1 TTATACAAGTATGTGAATATTTGTAAGTAATTTCAGAT
8068783 TTAT
1 TTAT
8068787 GTTTAGAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.45
Consensus pattern (38 bp):
TTATACAAGTATGTGAATATTTGTAAGTAATTTCAGAT
Found at i:8068764 original size:20 final size:20
Alignment explanation
Indices: 8068707--8068766 Score: 54
Period size: 20 Copynumber: 3.1 Consensus size: 20
8068697 ATGCATAACC
*
8068707 TTATACAGGTATGTGAATAT
1 TTATACAAGTATGTGAATAT
* **
8068727 TTGT--AAGTAAT-TTCATAT
1 TTATACAAGT-ATGTGAATAT
8068745 TTATACAAGTATGTGAATAT
1 TTATACAAGTATGTGAATAT
8068765 TT
1 TT
8068767 GTAAGTAATT
Statistics
Matches: 29, Mismatches: 7, Indels: 8
0.66 0.16 0.18
Matches are distributed among these distances:
18 11 0.38
19 4 0.14
20 14 0.48
ACGTcount: A:0.35, C:0.05, G:0.15, T:0.45
Consensus pattern (20 bp):
TTATACAAGTATGTGAATAT
Found at i:8091675 original size:2 final size:2
Alignment explanation
Indices: 8091662--8091697 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
8091652 GTAGTCTTGC
*
8091662 AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8091698 TCCCTTAAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:8093900 original size:21 final size:22
Alignment explanation
Indices: 8093874--8093915 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8093864 TTACCACTTC
8093874 AACAT-AATTACTCA-ATCAAAT
1 AACATAAATTAC-CATATCAAAT
8093895 AACATAAATTACCATATCAAA
1 AACATAAATTACCATATCAAA
8093916 ATCAAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.55, C:0.19, G:0.00, T:0.26
Consensus pattern (22 bp):
AACATAAATTACCATATCAAAT
Found at i:8099084 original size:25 final size:26
Alignment explanation
Indices: 8099031--8099085 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 26
8099021 TTTTTAATTA
*
8099031 ATATAAATTATTTGTAAAATTAATGAT
1 ATATAAAATATTTGTAAAATTAA-GAT
8099058 ATATAAAATATTT-TAAAAATTAA-AT
1 ATATAAAATATTTGT-AAAATTAAGAT
8099083 ATA
1 ATA
8099086 NNNNNNNNNN
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 5 0.19
26 1 0.04
27 20 0.77
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (26 bp):
ATATAAAATATTTGTAAAATTAAGAT
Found at i:8099794 original size:16 final size:16
Alignment explanation
Indices: 8099773--8099826 Score: 56
Period size: 16 Copynumber: 3.4 Consensus size: 16
8099763 ATATAATAAA
*
8099773 TAATATTTAAATGATT
1 TAATATTTAAATAATT
* *
8099789 TAATA-TAATAATAAAT
1 TAATATTTA-AATAATT
*
8099805 GAATATTTAAATAATT
1 TAATATTTAAATAATT
8099821 TAATAT
1 TAATAT
8099827 AATAATACAT
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
15 2 0.07
16 25 0.86
17 2 0.07
ACGTcount: A:0.52, C:0.00, G:0.04, T:0.44
Consensus pattern (16 bp):
TAATATTTAAATAATT
Found at i:8099815 original size:32 final size:32
Alignment explanation
Indices: 8099751--8099850 Score: 129
Period size: 32 Copynumber: 3.2 Consensus size: 32
8099741 NNNNNNNNNT
8099751 TTTAAA-AA-TTAA-AT-ATAATAAAT-AATA
1 TTTAAATAATTTAATATAATAATAAATGAATA
*
8099778 TTTAAATGATTTAATATAATAATAAATGAATA
1 TTTAAATAATTTAATATAATAATAAATGAATA
* *
8099810 TTTAAATAATTTAATATAATAATACATGAAATG
1 TTTAAATAATTTAATATAATAATAAATG-AATA
8099843 TTTAAATA
1 TTTAAATA
8099851 CAATAAAATA
Statistics
Matches: 63, Mismatches: 4, Indels: 6
0.86 0.05 0.08
Matches are distributed among these distances:
27 6 0.10
28 1 0.02
29 4 0.06
30 2 0.03
31 9 0.14
32 30 0.48
33 11 0.17
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.40
Consensus pattern (32 bp):
TTTAAATAATTTAATATAATAATAAATGAATA
Found at i:8099833 original size:16 final size:16
Alignment explanation
Indices: 8099786--8099833 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
8099776 TATTTAAATG
8099786 ATTTAATATAATAATA
1 ATTTAATATAATAATA
* * *
8099802 AATGAATAT-TTAAATA
1 ATTTAATATAAT-AATA
8099818 ATTTAATATAATAATA
1 ATTTAATATAATAATA
8099834 CATGAAATGT
Statistics
Matches: 24, Mismatches: 6, Indels: 4
0.71 0.18 0.12
Matches are distributed among these distances:
15 1 0.04
16 22 0.92
17 1 0.04
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (16 bp):
ATTTAATATAATAATA
Found at i:8101349 original size:22 final size:22
Alignment explanation
Indices: 8101321--8101370 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
8101311 ATTAATCATT
8101321 TCTCAATTT-CTTCTCAAATTGC
1 TCTCAATTTCCTTC-CAAATTGC
*
8101343 TCTCAATTTCCTTCCAAATTTC
1 TCTCAATTTCCTTCCAAATTGC
8101365 TCTCAA
1 TCTCAA
8101371 ATCCATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 22 0.85
23 4 0.15
ACGTcount: A:0.24, C:0.30, G:0.02, T:0.44
Consensus pattern (22 bp):
TCTCAATTTCCTTCCAAATTGC
Found at i:8101394 original size:51 final size:51
Alignment explanation
Indices: 8101332--8101431 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
8101322 CTCAATTTCT
8101332 TCTCAAATTGCTCTCAATTTCCT-TCCAAATTTCTCTCAAATCCATATTTAA
1 TCTCAAATTGCTCTCAATTTCCTCT-CAAATTTCTCTCAAATCCATATTTAA
* * * *
8101383 TCTCAATTTGCTCTCAATTTCCTCTTAAATTTCTCTTAAATCCCTATTT
1 TCTCAAATTGCTCTCAATTTCCTCTCAAATTTCTCTCAAATCCATATTT
8101432 TTAATTATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 43 0.98
52 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.02, T:0.45
Consensus pattern (51 bp):
TCTCAAATTGCTCTCAATTTCCTCTCAAATTTCTCTCAAATCCATATTTAA
Found at i:8102319 original size:22 final size:22
Alignment explanation
Indices: 8102291--8102340 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
8102281 ATTAATCATT
8102291 TCTCAATTT-CTTCTCAAATTGC
1 TCTCAATTTCCTTC-CAAATTGC
*
8102313 TCTCAATTTCCTTCCAAATTTC
1 TCTCAATTTCCTTCCAAATTGC
8102335 TCTCAA
1 TCTCAA
8102341 ATCCATATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 22 0.85
23 4 0.15
ACGTcount: A:0.24, C:0.30, G:0.02, T:0.44
Consensus pattern (22 bp):
TCTCAATTTCCTTCCAAATTGC
Found at i:8102364 original size:51 final size:51
Alignment explanation
Indices: 8102302--8102401 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
8102292 CTCAATTTCT
8102302 TCTCAAATTGCTCTCAATTTCCT-TCCAAATTTCTCTCAAATCCATATTTAA
1 TCTCAAATTGCTCTCAATTTCCTCT-CAAATTTCTCTCAAATCCATATTTAA
* * * *
8102353 TCTCAATTTGCTCTCAATTTCCTCTTAAATTTCTCTTAAATCCCTATTT
1 TCTCAAATTGCTCTCAATTTCCTCTCAAATTTCTCTCAAATCCATATTT
8102402 TTAATTATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 43 0.98
52 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.02, T:0.45
Consensus pattern (51 bp):
TCTCAAATTGCTCTCAATTTCCTCTCAAATTTCTCTCAAATCCATATTTAA
Found at i:8102909 original size:11 final size:11
Alignment explanation
Indices: 8102871--8102924 Score: 67
Period size: 11 Copynumber: 4.9 Consensus size: 11
8102861 TAAATCCTTT
*
8102871 CTCTC-AATTT
1 CTCTCAAATTC
8102881 CTCTCTAATATT-
1 CTCTC-AA-ATTC
8102893 CTCTCAAATTC
1 CTCTCAAATTC
8102904 CTCTCAAATTC
1 CTCTCAAATTC
8102915 CTCTCAAATT
1 CTCTCAAATT
8102925 TCTATTTAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
10 8 0.20
11 23 0.57
12 6 0.15
13 3 0.08
ACGTcount: A:0.26, C:0.31, G:0.00, T:0.43
Consensus pattern (11 bp):
CTCTCAAATTC
Found at i:8104867 original size:19 final size:20
Alignment explanation
Indices: 8104825--8104871 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
8104815 GATGCTACAT
8104825 GAAAT-ATACAATGCAATAA
1 GAAATAATACAATGCAATAA
* *
8104844 TAAATAATACAATGGAAT-A
1 GAAATAATACAATGCAATAA
8104863 GAAATAATA
1 GAAATAATA
8104872 TGAATAAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 13 0.54
20 11 0.46
ACGTcount: A:0.60, C:0.06, G:0.11, T:0.23
Consensus pattern (20 bp):
GAAATAATACAATGCAATAA
Found at i:8105113 original size:32 final size:33
Alignment explanation
Indices: 8105056--8105117 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
8105046 AAATAAGATA
* * *
8105056 AAAATAGAAAAGTTTGTATATGTATATATTTAC
1 AAAATAAAAAAGTATGTATAAGTATATATTTAC
8105089 AAAATAAAAAAG-ATGTATAAGTATATATT
1 AAAATAAAAAAGTATGTATAAGTATATATT
8105118 GGTAAATCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 15 0.58
33 11 0.42
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.35
Consensus pattern (33 bp):
AAAATAAAAAAGTATGTATAAGTATATATTTAC
Found at i:8108774 original size:124 final size:124
Alignment explanation
Indices: 8108480--8109009 Score: 766
Period size: 124 Copynumber: 4.3 Consensus size: 124
8108470 GCCCAAAATG
** * * *
8108480 CTACTGTAGCAAAAGCGCGTCCATATGGGAGAGATTTCAAAAATTATTCTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTT-TTATAAAGCATCCTGC
8108545 TTGAAGCGTTTTTTATACTATTTGCTTAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
65 TTGAAGCGTTTTTTATACTATTTGCTTAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* *
8108605 CTACTGTAGCAAAAGTGCGTCCACGTGTGAGCGATTTCAAAAATTCTTTTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTTT-ATAAAGCATCCTGC
8108670 TTGAAGCGTTTTTTATACTATTTGCTTAGAAACGTCAACTCGAAATTA-TTTTTCAGGAC
65 TTGAAGCGTTTTTTATACTATTTGCTTAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * *
8108729 CTACTGTAGCAAAAGCGCGTCCATGTGGGAGCGATTTCAAAAATTC--TTCT-AAGCATCTTGCT
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTTTATAAAGCATCCTGCT
* * * * *
8108791 TAAAGCATTTTTTATACTATTTGCTCAGAAATGTCAACTTGAAATTA-TTTTTCAGGAC
66 TGAAGCGTTTTTTATACTATTTGCTTAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * * *
8108849 CAACTGTAGCAAAAGCGCATCTACGTGGGAGCGATTTCAAAAATTCTTCTTATAAAGCATCTTGC
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTT-TTATAAAGCATCCTGC
* **
8108914 TTGAAGC-ATTTTTATACTATTTGCTTAGAAACGTCAACTTAAAATTATTTTTTCAGGAC
65 TTGAAGCGTTTTTTATACTATTTGCTTAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
* * *
8108973 CTACTGTATCAAAAACGCGTCCACGTGGGATCGATTT
1 CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTT
8109010 TCTTAATAAA
Statistics
Matches: 366, Mismatches: 33, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
120 106 0.29
121 1 0.00
122 2 0.01
123 39 0.11
124 114 0.31
125 104 0.28
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACGTGGGAGCGATTTCAAAAATTCTTTTATAAAGCATCCTGCT
TGAAGCGTTTTTTATACTATTTGCTTAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
Found at i:8108917 original size:244 final size:247
Alignment explanation
Indices: 8108480--8109009 Score: 791
Period size: 244 Copynumber: 2.1 Consensus size: 247
8108470 GCCCAAAATG
* *
8108480 CTACTGTAGCAAAAGCGCGTCCATATGGGAGAGATTTCAAAAATTATTCTGATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCATGTGGGAGCGATTTCAAAAATTATTC--ATAAAGCATCCTGC
* * * *
8108545 TTGAAGCGTTTTTTATACTATTTGCTTAGAAACGTCAACTCGAAATTATTTTTTCAGGACCTACT
64 TTAAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCAACT
* * *
8108610 GTAGCAAAAGTGCGTCCACGTGTGAGCGATTTCAAAAATTCTTTTGATAAAGCATCCTGCTTGAA
129 GTAGCAAAAGCGCATCCACGTGGGAGCGATTTCAAAAATTCTTTTGATAAAGCATCCTGCTTGAA
* *
8108675 GCGTTTTTTATACTATTTGCTTAGAAACGTCAACTCGAAATTA-TTTTTCAGGAC
194 GC-ATTTTTATACTATTTGCTTAGAAACGTCAACTCAAAATTATTTTTTCAGGAC
* *
8108729 CTACTGTAGCAAAAGCGCGTCCATGTGGGAGCGATTTCAAAAATTCTTC-T-AAGCATCTTGCTT
1 CTACTGTAGCAAAAGCGCGTCCATGTGGGAGCGATTTCAAAAATTATTCATAAAGCATCCTGCTT
* *
8108792 AAAGCATTTTTTATACTATTTGCTCAGAAATGTCAACTTGAAATTA-TTTTTCAGGACCAACTGT
66 AAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCAACTGT
* *
8108856 AGCAAAAGCGCATCTACGTGGGAGCGATTTCAAAAATTCTTCTT-ATAAAGCATCTTGCTTGAAG
131 AGCAAAAGCGCATCCACGTGGGAGCGATTTCAAAAATTCTT-TTGATAAAGCATCCTGCTTGAAG
*
8108920 CATTTTTATACTATTTGCTTAGAAACGTCAACTTAAAATTATTTTTTCAGGAC
195 CATTTTTATACTATTTGCTTAGAAACGTCAACTCAAAATTATTTTTTCAGGAC
* * * *
8108973 CTACTGTATCAAAAACGCGTCCACGTGGGATCGATTT
1 CTACTGTAGCAAAAGCGCGTCCATGTGGGAGCGATTT
8109010 TCTTAATAAA
Statistics
Matches: 257, Mismatches: 22, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
243 37 0.14
244 118 0.46
245 55 0.21
246 1 0.00
249 46 0.18
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34
Consensus pattern (247 bp):
CTACTGTAGCAAAAGCGCGTCCATGTGGGAGCGATTTCAAAAATTATTCATAAAGCATCCTGCTT
AAAGCATTTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCAACTGT
AGCAAAAGCGCATCCACGTGGGAGCGATTTCAAAAATTCTTTTGATAAAGCATCCTGCTTGAAGC
ATTTTTATACTATTTGCTTAGAAACGTCAACTCAAAATTATTTTTTCAGGAC
Found at i:8116411 original size:18 final size:18
Alignment explanation
Indices: 8116390--8116428 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
8116380 TCTTTTTCAC
8116390 CAGCAGCAGCCTCAGCCT
1 CAGCAGCAGCCTCAGCCT
**
8116408 CAGCCTCAGCCTCAGCCT
1 CAGCAGCAGCCTCAGCCT
8116426 CAG
1 CAG
8116429 TCTCAGTCTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.46, G:0.21, T:0.13
Consensus pattern (18 bp):
CAGCAGCAGCCTCAGCCT
Found at i:8116433 original size:6 final size:6
Alignment explanation
Indices: 8116400--8116484 Score: 98
Period size: 6 Copynumber: 14.2 Consensus size: 6
8116390 CAGCAGCAGC
* * * *
8116400 CTCAGC CTCAGC CTCAGC CTCAGC CTCAGT CTCAGT CTCAGT CTCAGT
1 CTCAGT CTCAGT CTCAGT CTCAGT CTCAGT CTCAGT CTCAGT CTCAGT
* * * *
8116448 CTCAGT CTCAGT CACAGT CGCAGT CGCAGT CACAGT C
1 CTCAGT CTCAGT CTCAGT CTCAGT CTCAGT CTCAGT C
8116485 ACAGCCACAG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 75 1.00
ACGTcount: A:0.19, C:0.39, G:0.19, T:0.24
Consensus pattern (6 bp):
CTCAGT
Found at i:8116485 original size:6 final size:6
Alignment explanation
Indices: 8116478--8116612 Score: 261
Period size: 6 Copynumber: 22.5 Consensus size: 6
8116468 CAGTCGCAGT
*
8116478 CACAGT CACAGC CACAGC CACAGC CACAGC CACAGC CACAGC CACAGC
1 CACAGC CACAGC CACAGC CACAGC CACAGC CACAGC CACAGC CACAGC
8116526 CACAGC CACAGC CACAGC CACAGC CACAGC CACAGC CACAGC CACAGC
1 CACAGC CACAGC CACAGC CACAGC CACAGC CACAGC CACAGC CACAGC
8116574 CACAGC CACAGC CACAGC CACAGC CACAGC CACAGC CAC
1 CACAGC CACAGC CACAGC CACAGC CACAGC CACAGC CAC
8116613 CTCCACTGCA
Statistics
Matches: 128, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
6 128 1.00
ACGTcount: A:0.33, C:0.50, G:0.16, T:0.01
Consensus pattern (6 bp):
CACAGC
Found at i:8122052 original size:12 final size:12
Alignment explanation
Indices: 8122035--8122074 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
8122025 TCACACTCTC
*
8122035 GTGTGCCAGGCT
1 GTGTGCTAGGCT
8122047 GTGTGCTAGGCT
1 GTGTGCTAGGCT
8122059 GTGTGCTAGGCT
1 GTGTGCTAGGCT
8122071 GTGT
1 GTGT
8122075 AACTGCCTGA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.07, C:0.17, G:0.42, T:0.33
Consensus pattern (12 bp):
GTGTGCTAGGCT
Found at i:8123459 original size:20 final size:20
Alignment explanation
Indices: 8123396--8123459 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 20
8123386 GCATCATAGA
8123396 TGCATAACAGGGGCACCGAAG
1 TGCA-AACAGGGGCACCGAAG
* * * *
8123417 TGTAGACAGGGGTA-CAAATG
1 TGCAAACAGGGGCACCGAA-G
*
8123437 TGCAAACAGGGGCACCGTAG
1 TGCAAACAGGGGCACCGAAG
8123457 TGC
1 TGC
8123460 GAATAGGAAC
Statistics
Matches: 32, Mismatches: 9, Indels: 5
0.70 0.20 0.11
Matches are distributed among these distances:
19 3 0.09
20 24 0.75
21 5 0.16
ACGTcount: A:0.31, C:0.20, G:0.34, T:0.14
Consensus pattern (20 bp):
TGCAAACAGGGGCACCGAAG
Found at i:8125116 original size:124 final size:124
Alignment explanation
Indices: 8124896--8125145 Score: 500
Period size: 124 Copynumber: 2.0 Consensus size: 124
8124886 ACAACCTTAG
8124896 TAACACTCCGTAAATATCTCAATTTATAGAAACGAGGTCCTAATACCTCATTTTCTAAATGGGTC
1 TAACACTCCGTAAATATCTCAATTTATAGAAACGAGGTCCTAATACCTCATTTTCTAAATGGGTC
8124961 CAACCACTTGAACCTAATTGTTCTTCCATTTAACCAAAAATCATTAAATTAAAATTTAT
66 CAACCACTTGAACCTAATTGTTCTTCCATTTAACCAAAAATCATTAAATTAAAATTTAT
8125020 TAACACTCCGTAAATATCTCAATTTATAGAAACGAGGTCCTAATACCTCATTTTCTAAATGGGTC
1 TAACACTCCGTAAATATCTCAATTTATAGAAACGAGGTCCTAATACCTCATTTTCTAAATGGGTC
8125085 CAACCACTTGAACCTAATTGTTCTTCCATTTAACCAAAAATCATTAAATTAAAATTTAT
66 CAACCACTTGAACCTAATTGTTCTTCCATTTAACCAAAAATCATTAAATTAAAATTTAT
8125144 TA
1 TA
8125146 TTACACCATT
Statistics
Matches: 126, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
124 126 1.00
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.34
Consensus pattern (124 bp):
TAACACTCCGTAAATATCTCAATTTATAGAAACGAGGTCCTAATACCTCATTTTCTAAATGGGTC
CAACCACTTGAACCTAATTGTTCTTCCATTTAACCAAAAATCATTAAATTAAAATTTAT
Found at i:8131024 original size:29 final size:29
Alignment explanation
Indices: 8130957--8131147 Score: 142
Period size: 29 Copynumber: 6.6 Consensus size: 29
8130947 AACAATCGAA
*
8130957 CGAATATGAAAAGAGATAGCTTCAGCTAT
1 CGAATATGAAAAGGGATAGCTTCAGCTAT
*
8130986 CGAATATGAAAAGGGATAGCTTCGGCTAT
1 CGAATATGAAAAGGGATAGCTTCAGCTAT
* * * *
8131015 C-AATTTTGAAAAGGGAT-G-GTGATGACCAT
1 CGAA-TATGAAAAGGGATAGCTTCA-G-CTAT
* * *
8131044 C-AACTATGAAAAGGGAT-G-GTGATGACCAT
1 CGAA-TATGAAAAGGGATAGCTTCA-G-CTAT
* * *
8131073 CAAATATGAAAAGGGATGGCTTCGGCTAT
1 CGAATATGAAAAGGGATAGCTTCAGCTAT
* * *
8131102 CGAATATGAAAAGGGATAGCTTTAACCAT
1 CGAATATGAAAAGGGATAGCTTCAGCTAT
*
8131131 CGATTATGAAAAGGGAT
1 CGAATATGAAAAGGGAT
8131148 GGTGACGATC
Statistics
Matches: 136, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
27 1 0.01
28 4 0.03
29 126 0.93
30 4 0.03
31 1 0.01
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.24
Consensus pattern (29 bp):
CGAATATGAAAAGGGATAGCTTCAGCTAT
Done.