Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 27 of 145
Found at i:8666320 original size:12 final size:12
Alignment explanation
Indices: 8666303--8666352 Score: 64
Period size: 12 Copynumber: 4.2 Consensus size: 12
8666293 ACACACACAA
8666303 CCGTGTCGCAGG
1 CCGTGTCGCAGG
* *
8666315 CCGTGTCTCAGA
1 CCGTGTCGCAGG
*
8666327 CCGTGTCGCAGC
1 CCGTGTCGCAGG
*
8666339 CCGTGTCCCAGG
1 CCGTGTCGCAGG
8666351 CC
1 CC
8666353 ATGTGTACCA
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.10, C:0.40, G:0.32, T:0.18
Consensus pattern (12 bp):
CCGTGTCGCAGG
Found at i:8670542 original size:40 final size:40
Alignment explanation
Indices: 8670399--8670545 Score: 143
Period size: 40 Copynumber: 3.6 Consensus size: 40
8670389 GACTTTATAA
* * * *
8670399 TGCATTCAGGGGATACCAAAGTATAAACAGCGACA-TGTATG
1 TGCATTCAGGGG-TACCAAAGTACAAATAGGGGCACT-TATG
* * * * * **
8670440 TGCATTCAGGGGTATCGAAGTAAAAATAGGTGTACGCATG
1 TGCATTCAGGGGTACCAAAGTACAAATAGGGGCACTTATG
* *
8670480 TGCATTTAGGGGTACTAAAGTACAAATAGGGGCACTTATG
1 TGCATTCAGGGGTACCAAAGTACAAATAGGGGCACTTATG
*
8670520 TGCATTCAGAGGTACCAAAGTACAAA
1 TGCATTCAGGGGTACCAAAGTACAAA
8670546 CCGAGGCATA
Statistics
Matches: 83, Mismatches: 22, Indels: 3
0.77 0.20 0.03
Matches are distributed among these distances:
40 71 0.86
41 12 0.14
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (40 bp):
TGCATTCAGGGGTACCAAAGTACAAATAGGGGCACTTATG
Found at i:8677531 original size:2 final size:2
Alignment explanation
Indices: 8677524--8677559 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
8677514 AGCAAGTGCA
8677524 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8677560 GCTAGTTATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8680313 original size:12 final size:12
Alignment explanation
Indices: 8680296--8680320 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8680286 GGTGTTCATT
8680296 CGGTTAACCGAC
1 CGGTTAACCGAC
8680308 CGGTTAACCGAC
1 CGGTTAACCGAC
8680320 C
1 C
8680321 CGAAATAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:8680459 original size:9 final size:9
Alignment explanation
Indices: 8680442--8680505 Score: 85
Period size: 9 Copynumber: 7.1 Consensus size: 9
8680432 GGTTAAAAAC
*
8680442 TAACTGAAT
1 TAACCGAAT
8680451 TAACCGAAT
1 TAACCGAAT
*
8680460 TAACCGGAT
1 TAACCGAAT
8680469 T-ACCAGAAT
1 TAACC-GAAT
8680478 TAACCGAAT
1 TAACCGAAT
*
8680487 TACCCGAAT
1 TAACCGAAT
8680496 TAACCGAAT
1 TAACCGAAT
8680505 T
1 T
8680506 GAATCACTAC
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
8 3 0.06
9 42 0.88
10 3 0.06
ACGTcount: A:0.41, C:0.22, G:0.12, T:0.25
Consensus pattern (9 bp):
TAACCGAAT
Found at i:8680648 original size:18 final size:18
Alignment explanation
Indices: 8680608--8680651 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
8680598 AATTTTTATG
**
8680608 ATTGGGTTGGGTTGGGTA
1 ATTGGGTTGGGTTGAATA
8680626 ATTGGGTTGGGTTGAATA
1 ATTGGGTTGGGTTGAATA
*
8680644 CTTGGGTT
1 ATTGGGTT
8680652 TGGATTGAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.14, C:0.02, G:0.43, T:0.41
Consensus pattern (18 bp):
ATTGGGTTGGGTTGAATA
Found at i:8682496 original size:40 final size:39
Alignment explanation
Indices: 8682436--8682550 Score: 142
Period size: 40 Copynumber: 2.9 Consensus size: 39
8682426 GCCTTGATTG
* * *
8682436 CACTTCGGTGCTCCTATTTGCACAACTGTGCCTCTGTAAA
1 CACTTCGGTG-TCCTGTTTGCACAACTATGCCCCTGTAAA
**
8682476 CACTTCGGTGTTCCTGTTTGCACATTTATGCCCCTGTAAA
1 CACTTCGGTG-TCCTGTTTGCACAACTATGCCCCTGTAAA
8682516 CGA-TTCGGTGTCCTTGTTTGCACAACTATGCCCCT
1 C-ACTTCGGTGTCC-TGTTTGCACAACTATGCCCCT
8682551 AAATGCACTC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
39 3 0.05
40 61 0.94
41 1 0.02
ACGTcount: A:0.17, C:0.30, G:0.18, T:0.35
Consensus pattern (39 bp):
CACTTCGGTGTCCTGTTTGCACAACTATGCCCCTGTAAA
Found at i:8684479 original size:3 final size:3
Alignment explanation
Indices: 8684473--8684517 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
8684463 TCTTCTTATT
* * *
8684473 CTC CTC CTC CTC CTC CTC CTC CTC CTA CTC ATC CTC CTT CTC CTC
1 CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC CTC
8684518 TTCTTCTTTT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.04, C:0.60, G:0.00, T:0.36
Consensus pattern (3 bp):
CTC
Found at i:8684538 original size:17 final size:17
Alignment explanation
Indices: 8684516--8684579 Score: 51
Period size: 17 Copynumber: 3.8 Consensus size: 17
8684506 CTCCTTCTCC
8684516 TCTTCTTCTTTTCTTCT
1 TCTTCTTCTTTTCTTCT
* **
8684533 TCTTCTCCACTTC-TCT
1 TCTTCTTCTTTTCTTCT
*
8684549 TATTCTTCTTTT-TCTCT
1 TCTTCTTCTTTTCT-TCT
*
8684566 TGTTCTTCTATTTC
1 TCTTCTTCT-TTTC
8684580 CCAGAGTTCT
Statistics
Matches: 35, Mismatches: 8, Indels: 6
0.71 0.16 0.12
Matches are distributed among these distances:
16 11 0.31
17 21 0.60
18 3 0.09
ACGTcount: A:0.05, C:0.30, G:0.02, T:0.64
Consensus pattern (17 bp):
TCTTCTTCTTTTCTTCT
Found at i:8684539 original size:25 final size:25
Alignment explanation
Indices: 8684509--8684579 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
8684499 ACTCATCCTC
8684509 CTTCTCCTCTTCTTCTTTTCTTCTT
1 CTTCTCCTCTTCTTCTTTTCTTCTT
*
8684534 CTTCTCCACTTC-TCTTATTCTTCTT
1 CTTCTCCTCTTCTTCTT-TTCTTCTT
* * *
8684559 TTTCTCTTGTTCTTCTATTTC
1 CTTCTCCTCTTCTTCT-TTTC
8684580 CCAGAGTTCT
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
24 4 0.11
25 27 0.71
26 6 0.16
27 1 0.03
ACGTcount: A:0.04, C:0.32, G:0.01, T:0.62
Consensus pattern (25 bp):
CTTCTCCTCTTCTTCTTTTCTTCTT
Found at i:8687737 original size:261 final size:259
Alignment explanation
Indices: 8687256--8687969 Score: 1160
Period size: 261 Copynumber: 2.7 Consensus size: 259
8687246 AAAACAATCT
* *
8687256 TATAAGAAATATTACATAGAGCAATGAGTCTAAAATTAGTAATCAATTATGGATTATCATGTTGG
1 TATAAGAAACATTACATAGAGCAATGAGTCTAAAATGAGTAATCAATTATGGATTATCATGTTGG
** * * *
8687321 ATCTAGTGCCCTAAGTGTAGTATATTTGTTTTGTATACTTATATTTTTCAAAAAAAATAGTTTAA
66 ATCTAGTGCCCTAAGTGTAGTATATTTGTTTTGTATACTTATATTTTTTGAACAAATTGGTTTAA
* * *
8687386 TAAAAATATCCATTAATTACATTTATATCCTTTGTATATTGTACTCAATGTTTTTACATGAAAAA
131 TAAAAATATCCATCAATTACATTTATATCCTTTGTATATTGTCCTCAATGTTTTTACATGCAAAA
*
8687451 ATGAGTAATCAATTATGGATTATCATGTTGGATCTAGTGTCCTAAGTGTAGTATATTTGTTTTG
196 ATGAGTAATCAATTATGGATTATCATGTTAGATCTAGTGTCCTAAGTGTAGTATATTTGTTTTG
*
8687515 TATAAGAAACATTACATAGAACAATGAGTCTAAAATGAGTAATCAATTATGGATTATCATGTTGG
1 TATAAGAAACATTACATAGAGCAATGAGTCTAAAATGAGTAATCAATTATGGATTATCATGTTGG
* * *
8687580 ATCTAGTGTCCTAAGTGTAGTATATTTATTTTTTTATACTTATACTTTTTTGAACAAATTGGTTT
66 ATCTAGTGCCCTAAGTGTAGTATATTT-GTTTTGTATACTTATA-TTTTTTGAACAAATTGGTTT
* *
8687645 AATAAAAATATCCATCAATTACATTTATATCATTTGTATATTGTCCTCAATGTTTTTGCATGCAA
129 AATAAAAATATCCATCAATTACATTTATATCCTTTGTATATTGTCCTCAATGTTTTTACATGCAA
*
8687710 AAATGAGTAATCAATTATGGATTATCATGTTAGATCTAGTGTCCTACGTGTAGTATATTTGTTTT
194 AAATGAGTAATCAATTATGGATTATCATGTTAGATCTAGTGTCCTAAGTGTAGTATATTTGTTTT
8687775 G
259 G
* *
8687776 TATAAGAAACATTACATAGAGCAATAAGTCTAAAATGAGTAATCAATTATGGATTATAATGTTGG
1 TATAAGAAACATTACATAGAGCAATGAGTCTAAAATGAGTAATCAATTATGGATTATCATGTTGG
*
8687841 ATCTAGTGCCCTAAGTATAGTATATTTGTTTTGTATACTTAT-TTTTTTCGAACAAATTGGTTTA
66 ATCTAGTGCCCTAAGTGTAGTATATTTGTTTTGTATACTTATATTTTTT-GAACAAATTGGTTTA
* * * * *
8687905 ATAAAAATATTCATCAATTACATTTATATCCTTTGTATATTGTCTTAAATGTTTTTTCATACAAA
130 ATAAAAATATCCATCAATTACATTTATATCCTTTGTATATTGTCCTCAATGTTTTTACATGCAAA
8687970 GAAAAATGGA
Statistics
Matches: 421, Mismatches: 31, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
258 6 0.01
259 162 0.38
260 27 0.06
261 226 0.54
ACGTcount: A:0.35, C:0.10, G:0.14, T:0.42
Consensus pattern (259 bp):
TATAAGAAACATTACATAGAGCAATGAGTCTAAAATGAGTAATCAATTATGGATTATCATGTTGG
ATCTAGTGCCCTAAGTGTAGTATATTTGTTTTGTATACTTATATTTTTTGAACAAATTGGTTTAA
TAAAAATATCCATCAATTACATTTATATCCTTTGTATATTGTCCTCAATGTTTTTACATGCAAAA
ATGAGTAATCAATTATGGATTATCATGTTAGATCTAGTGTCCTAAGTGTAGTATATTTGTTTTG
Found at i:8697957 original size:13 final size:12
Alignment explanation
Indices: 8697924--8697956 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
8697914 TATTTTTTTA
8697924 TTTTTAAAATAC
1 TTTTTAAAATAC
8697936 TTTTTAAAATAC
1 TTTTTAAAATAC
8697948 TTTTTAAAA
1 TTTTTAAAA
8697957 AAAATTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTTTAAAATAC
Found at i:8706216 original size:93 final size:94
Alignment explanation
Indices: 8706099--8706285 Score: 367
Period size: 93 Copynumber: 2.0 Consensus size: 94
8706089 CTTTGAGACA
8706099 TTTAGGGCTAATTTTAAAAGAATGATTAAAGATAAAAATTATTATCTTGGATTTTTTATGTATTT
1 TTTAGGGCTAATTTTAAAAGAATGATTAAAGATAAAAATTATTATCTTGGATTTTTTATGTATTT
8706164 CCATTTTTGGTATATTATCCTTCAAATTT
66 CCATTTTTGGTATATTATCCTTCAAATTT
8706193 TTTAGGGCT-ATTTTAAAAGAATGATTAAAGATAAAAATTATTATCTTGGATTTTTTATGTATTT
1 TTTAGGGCTAATTTTAAAAGAATGATTAAAGATAAAAATTATTATCTTGGATTTTTTATGTATTT
8706257 CCATTTTTGGTATATTATCCTTCAAATTT
66 CCATTTTTGGTATATTATCCTTCAAATTT
8706286 AGTTGATAAA
Statistics
Matches: 93, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
93 84 0.90
94 9 0.10
ACGTcount: A:0.33, C:0.07, G:0.12, T:0.48
Consensus pattern (94 bp):
TTTAGGGCTAATTTTAAAAGAATGATTAAAGATAAAAATTATTATCTTGGATTTTTTATGTATTT
CCATTTTTGGTATATTATCCTTCAAATTT
Found at i:8708009 original size:15 final size:15
Alignment explanation
Indices: 8707975--8708024 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
8707965 AGCTATTGCT
*
8707975 AGAAAGAGGAGAAGG
1 AGAAGGAGGAGAAGG
*
8707990 AGAAGGAGGAGGAGG
1 AGAAGGAGGAGAAGG
* * *
8708005 AGAAGAAGAAGAAGA
1 AGAAGGAGGAGAAGG
8708020 AGAAG
1 AGAAG
8708025 AGATACATCA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (15 bp):
AGAAGGAGGAGAAGG
Found at i:8709601 original size:33 final size:33
Alignment explanation
Indices: 8709524--8709612 Score: 160
Period size: 34 Copynumber: 2.7 Consensus size: 33
8709514 TCAATTTACA
*
8709524 CGTTACAAACACCAATATACAAGGCAGAACAGT
1 CGTTATAAACACCAATATACAAGGCAGAACAGT
8709557 CGGTTATAAACACCAATATACAAGGCAGAACAGT
1 C-GTTATAAACACCAATATACAAGGCAGAACAGT
8709591 CGTTATAAACACCAATATACAA
1 CGTTATAAACACCAATATACAA
8709613 CGATTTTTCA
Statistics
Matches: 54, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
33 22 0.41
34 32 0.59
ACGTcount: A:0.46, C:0.22, G:0.13, T:0.18
Consensus pattern (33 bp):
CGTTATAAACACCAATATACAAGGCAGAACAGT
Found at i:8719296 original size:16 final size:15
Alignment explanation
Indices: 8719268--8719338 Score: 70
Period size: 16 Copynumber: 4.5 Consensus size: 15
8719258 GTTTGGTTCA
8719268 CTGTAATAGAATAGAG
1 CTGTAAT-GAATAGAG
* *
8719284 CTATAATGAAATAGAA
1 CTGTAATG-AATAGAG
*
8719300 ATGTAATTGAATAGAG
1 CTGTAA-TGAATAGAG
*
8719316 CTGTAATGGAATAAAG
1 CTGTAAT-GAATAGAG
8719332 CTGTAAT
1 CTGTAAT
8719339 CAGTAATCAA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
15 2 0.04
16 41 0.91
17 2 0.04
ACGTcount: A:0.45, C:0.06, G:0.21, T:0.28
Consensus pattern (15 bp):
CTGTAATGAATAGAG
Found at i:8719337 original size:32 final size:32
Alignment explanation
Indices: 8719267--8719338 Score: 92
Period size: 32 Copynumber: 2.2 Consensus size: 32
8719257 CGTTTGGTTC
8719267 ACTGTAATAGAATAGAGCTATAATGAAATAGA
1 ACTGTAATAGAATAGAGCTATAATGAAATAGA
* * * *
8719299 AATGTAATTGAATAGAGCTGTAATGGAATA-A
1 ACTGTAATAGAATAGAGCTATAATGAAATAGA
8719330 AGCTGTAAT
1 A-CTGTAAT
8719339 CAGTAATCAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
31 2 0.06
32 32 0.94
ACGTcount: A:0.46, C:0.06, G:0.21, T:0.28
Consensus pattern (32 bp):
ACTGTAATAGAATAGAGCTATAATGAAATAGA
Found at i:8722686 original size:18 final size:19
Alignment explanation
Indices: 8722665--8722706 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
8722655 CAATTTCATC
* *
8722665 GAAATAA-TAACACGAAAA
1 GAAATAATTAAAACAAAAA
8722683 GAAA-AATTAAAACAAAAA
1 GAAATAATTAAAACAAAAA
8722701 GAAATA
1 GAAATA
8722707 CAATCTATGT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
17 2 0.10
18 17 0.85
19 1 0.05
ACGTcount: A:0.71, C:0.07, G:0.10, T:0.12
Consensus pattern (19 bp):
GAAATAATTAAAACAAAAA
Found at i:8736833 original size:16 final size:18
Alignment explanation
Indices: 8736804--8736843 Score: 66
Period size: 17 Copynumber: 2.3 Consensus size: 18
8736794 TACAAAAACT
8736804 AATTTTTAACTAAAT-AA
1 AATTTTTAACTAAATGAA
8736821 AATTTTTAA-TAAATGAA
1 AATTTTTAACTAAATGAA
8736838 AATTTT
1 AATTTT
8736844 ATTGATAAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 5 0.23
17 17 0.77
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (18 bp):
AATTTTTAACTAAATGAA
Found at i:8737724 original size:11 final size:11
Alignment explanation
Indices: 8737666--8737725 Score: 52
Period size: 11 Copynumber: 5.3 Consensus size: 11
8737656 TTCACAAACT
*
8737666 AATTCTCTCTGA
1 AATT-TCTCTCA
8737678 AATTTCCTCTC-
1 AATTT-CTCTCA
8737689 AATTTGCTCTCA
1 AATTT-CTCTCA
*
8737701 AATTCCT-TCCA
1 AATTTCTCT-CA
8737712 AATTTCTCTCA
1 AATTTCTCTCA
8737723 AAT
1 AAT
8737726 CCATATTTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 9
0.75 0.08 0.17
Matches are distributed among these distances:
10 1 0.03
11 26 0.65
12 13 0.32
ACGTcount: A:0.27, C:0.28, G:0.03, T:0.42
Consensus pattern (11 bp):
AATTTCTCTCA
Found at i:8739869 original size:124 final size:125
Alignment explanation
Indices: 8739702--8740073 Score: 527
Period size: 124 Copynumber: 3.0 Consensus size: 125
8739692 CAAACATGTT
*
8739702 ACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAGCATTCTGGTA
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATTCTGGTA
*
8739767 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACCA
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTTCAGGACCA
* * ** * *
8739827 ACTGTAGCAAAAGCG-GTCCACGAGGGCGCGATTTCAGAAATTCGACTCA-AATAGCATCCTGCT
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATTCTGGT
* * * * * *
8739890 TGAAGTGTTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATAATTT-TTTCAGGACCT
65 AGAAGCG-ATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTTCAGGACCA
* * *
8739951 ACTGTAGCAAAAGCGCGTCCACGTGGGTGCGATTTAACAAATTCTTCTCATAAAACA-TCTGGTA
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATTCTGGTA
* *
8740015 AAAGCGATTTTATACTATTTGCTCGGAAACGTCAACTCGAAATTATTTCTTTCAGGACC
66 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTTCAGGACC
8740074 TAAAAACCCT
Statistics
Matches: 212, Mismatches: 30, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
123 40 0.19
124 85 0.40
125 85 0.40
126 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.30
Consensus pattern (125 bp):
ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATTCTGGTA
GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTTCAGGACCA
Found at i:8739924 original size:125 final size:124
Alignment explanation
Indices: 8739702--8740073 Score: 525
Period size: 125 Copynumber: 3.0 Consensus size: 124
8739692 CAAACATGTT
*
8739702 ACTGTAGCAAAAGCGCGTCCACGTGGGCACGATTTCACAAATTCTTCTCATAAAGCATTCTGGTA
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCA-TCTGGTA
*
8739767 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACCA
65 GAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTTCAGGACCA
* * ** *
8739827 ACTGTAGCAAAAGCG-GTCCACGAGGGCGCGATTTCAGAAATTCGACTCA-AATAGCATCCTGCT
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAA-AGCAT-CTGGT
* * * * * *
8739890 TGAAGTGTTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATAATTT-TTTCAGGACCT
64 AGAAGCG-ATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTTCAGGACCA
* * * *
8739951 ACTGTAGCAAAAGCGCGTCCACGTGGGTGCGATTTAACAAATTCTTCTCATAAAACATCTGGTAA
1 ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCTGGTAG
*
8740016 AAGCGATTTTATACTATTTGCTCGGAAACGTCAACTCGAAATTATTTCTTTCAGGACC
66 AAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTTCAGGACC
8740074 TAAAAACCCT
Statistics
Matches: 213, Mismatches: 28, Indels: 13
0.84 0.11 0.05
Matches are distributed among these distances:
123 41 0.19
124 84 0.39
125 86 0.40
126 2 0.01
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.30
Consensus pattern (124 bp):
ACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCTGGTAG
AAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTTCAGGACCA
Found at i:8749337 original size:12 final size:12
Alignment explanation
Indices: 8749320--8749360 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
8749310 GATGCCATAT
*
8749320 GGCCGTGTGCTA
1 GGCCGTGTGGTA
8749332 GGCCGTGTGGTA
1 GGCCGTGTGGTA
* *
8749344 GGCAGTATGGTA
1 GGCCGTGTGGTA
8749356 GGCCG
1 GGCCG
8749361 CGTAACTCAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.12, C:0.20, G:0.46, T:0.22
Consensus pattern (12 bp):
GGCCGTGTGGTA
Found at i:8752001 original size:16 final size:16
Alignment explanation
Indices: 8751982--8752019 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
8751972 ACTCTAGTTG
8751982 AGAACATCTAATGTTT
1 AGAACATCTAATGTTT
8751998 AGAACATCTAATGTTT
1 AGAACATCTAATGTTT
*
8752014 GGAACA
1 AGAACA
8752020 ACTCTTGTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (16 bp):
AGAACATCTAATGTTT
Found at i:8752684 original size:16 final size:17
Alignment explanation
Indices: 8752636--8752687 Score: 54
Period size: 16 Copynumber: 3.2 Consensus size: 17
8752626 TATAAATATC
* *
8752636 ATTAATAACATTATAAT
1 ATTAATAAAATTCTAAT
*
8752653 A-AAATAAAATTCTAAT
1 ATTAATAAAATTCTAAT
*
8752669 ATTAATAAACTT-TAAT
1 ATTAATAAAATTCTAAT
8752685 ATT
1 ATT
8752688 TTGATATTGA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
16 20 0.69
17 9 0.31
ACGTcount: A:0.54, C:0.06, G:0.00, T:0.40
Consensus pattern (17 bp):
ATTAATAAAATTCTAAT
Found at i:8759581 original size:58 final size:60
Alignment explanation
Indices: 8759519--8759634 Score: 164
Period size: 61 Copynumber: 1.9 Consensus size: 60
8759509 ATCACTTTAA
* *
8759519 TATTAAATTAATATAATACTTA-T-CAAGACAAATATTAGATTAAATTTAATATTAAATC
1 TATTAAATTAATAGAATACTTACTACAAGACAAATATTAAATTAAATTTAATATTAAATC
* * *
8759577 TATTAAATTAATAGGATACTTATCTACAAGATAAATATTAAATTTAATTTAATATTAA
1 TATTAAATTAATAGAATACTTA-CTACAAGACAAATATTAAATTAAATTTAATATTAA
8759635 GATAATCACA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
58 20 0.40
60 1 0.02
61 29 0.58
ACGTcount: A:0.49, C:0.06, G:0.04, T:0.41
Consensus pattern (60 bp):
TATTAAATTAATAGAATACTTACTACAAGACAAATATTAAATTAAATTTAATATTAAATC
Found at i:8774441 original size:41 final size:41
Alignment explanation
Indices: 8774381--8774465 Score: 143
Period size: 41 Copynumber: 2.1 Consensus size: 41
8774371 GAGATCTAGC
* *
8774381 ATATGTTGTGGATTATCTACATCTTGTGTGCGTAGCATCGA
1 ATATGTTGTGGATTATCTACATCTTGTGTGAGTAGCACCGA
*
8774422 ATATGTTGTGGATTCTCTACATCTTGTGTGAGTAGCACCGA
1 ATATGTTGTGGATTATCTACATCTTGTGTGAGTAGCACCGA
8774463 ATA
1 ATA
8774466 ACACTTATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.38
Consensus pattern (41 bp):
ATATGTTGTGGATTATCTACATCTTGTGTGAGTAGCACCGA
Found at i:8778528 original size:17 final size:17
Alignment explanation
Indices: 8778501--8778546 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
8778491 TGGATATAAT
* *
8778501 AAATATATTTATTTTTA
1 AAATATTTTTAATTTTA
*
8778518 AAATTTTTTTAATTTTA
1 AAATATTTTTAATTTTA
8778535 AAATATTTTTAA
1 AAATATTTTTAA
8778547 AATACTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
AAATATTTTTAATTTTA
Found at i:8778679 original size:16 final size:15
Alignment explanation
Indices: 8778658--8778687 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
8778648 TTTTTTATGA
8778658 CCCGGCCCGAACCCAG
1 CCCGGCCCG-ACCCAG
8778674 CCCGGCCCGACCCA
1 CCCGGCCCGACCCA
8778688 TGAGCACCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.17, C:0.60, G:0.23, T:0.00
Consensus pattern (15 bp):
CCCGGCCCGACCCAG
Found at i:8780367 original size:21 final size:21
Alignment explanation
Indices: 8780343--8780384 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8780333 TTTACCTAAG
* *
8780343 ATATGAATTGGATTGAATTGA
1 ATATAAATTGGATTAAATTGA
*
8780364 ATATAAATTGTATTAAATTGA
1 ATATAAATTGGATTAAATTGA
8780385 TGTTAAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (21 bp):
ATATAAATTGGATTAAATTGA
Found at i:8781145 original size:49 final size:49
Alignment explanation
Indices: 8781092--8781197 Score: 115
Period size: 50 Copynumber: 2.1 Consensus size: 49
8781082 TTCTAGACAT
* ** *
8781092 TGGCTCGCTTGAACTTCCCGATTACA-GCTCTTATGAGCTTCCCGTTACA
1 TGGCTCGCATGAACTTCCCG-TTACAGGCTCACATGAGATTCCCGTTACA
* * *
8781141 TGGCTCACATGGACTTCCCGTTACATGGCTCACATGAGATTCCCGTTATA
1 TGGCTCGCATGAACTTCCCGTTACA-GGCTCACATGAGATTCCCGTTACA
*
8781191 TAGCTCG
1 TGGCTCG
8781198 AAAGAGAGCT
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
48 5 0.11
49 17 0.37
50 24 0.52
ACGTcount: A:0.20, C:0.29, G:0.20, T:0.31
Consensus pattern (49 bp):
TGGCTCGCATGAACTTCCCGTTACAGGCTCACATGAGATTCCCGTTACA
Found at i:8781157 original size:25 final size:26
Alignment explanation
Indices: 8781124--8781214 Score: 109
Period size: 25 Copynumber: 3.6 Consensus size: 26
8781114 TACAGCTCTT
8781124 ATGAG-CTTCCCGTTACATGGCTCAC
1 ATGAGACTTCCCGTTACATGGCTCAC
8781149 ATG-GACTTCCCGTTACATGGCTCAC
1 ATGAGACTTCCCGTTACATGGCTCAC
* *
8781174 ATGAGA-TTCCCGTTATATAGCTCGA-
1 ATGAGACTTCCCGTTACATGGCTC-AC
*
8781199 AAGAGAGCTTCCCGTT
1 ATGAGA-CTTCCCGTT
8781215 TAAGTGCTCA
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
24 1 0.02
25 46 0.79
26 3 0.05
27 8 0.14
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (26 bp):
ATGAGACTTCCCGTTACATGGCTCAC
Found at i:8781854 original size:2 final size:2
Alignment explanation
Indices: 8781849--8781876 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8781839 TATATATATA
8781849 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
8781877 GCTTTATCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:8790446 original size:21 final size:21
Alignment explanation
Indices: 8790422--8790463 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8790412 TTTACCTAAG
* *
8790422 ATATGAATTGGATTGAATTGA
1 ATATAAATTGGATTAAATTGA
*
8790443 ATATAAATTGTATTAAATTGA
1 ATATAAATTGGATTAAATTGA
8790464 TGTTAAATTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (21 bp):
ATATAAATTGGATTAAATTGA
Found at i:8790984 original size:25 final size:25
Alignment explanation
Indices: 8790956--8791003 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
8790946 TACAGCTCTT
8790956 ATGAGCTTCCCGTTACATGGCTCAC
1 ATGAGCTTCCCGTTACATGGCTCAC
* *
8790981 ATGAGCTTTCCGTTATATGGCTC
1 ATGAGCTTCCCGTTACATGGCTC
8791004 GAAAGAGAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.19, C:0.27, G:0.21, T:0.33
Consensus pattern (25 bp):
ATGAGCTTCCCGTTACATGGCTCAC
Found at i:8791657 original size:2 final size:2
Alignment explanation
Indices: 8791652--8791724 Score: 146
Period size: 2 Copynumber: 36.5 Consensus size: 2
8791642 GATATATATA
8791652 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
8791694 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
8791725 CTTTATCATG
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 71 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:8793756 original size:5 final size:5
Alignment explanation
Indices: 8793746--8793782 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
8793736 ATCTAAACAA
8793746 TAATT TAATT TAATT TAATT TAATT TAATT TAATT TA
1 TAATT TAATT TAATT TAATT TAATT TAATT TAATT TA
8793783 TTAATTCCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TAATT
Found at i:8808070 original size:20 final size:20
Alignment explanation
Indices: 8808042--8808127 Score: 67
Period size: 20 Copynumber: 4.5 Consensus size: 20
8808032 GTTACAAAAT
*
8808042 AATTCAAAATAATTT-TCAAA
1 AATTTAAAATAATTTAT-AAA
8808062 AATTTAAAAT-ATTTATAAA
1 AATTTAAAATAATTTATAAA
*
8808081 AATTTCAAAAAAATTCTA-AAA
1 AATTT-AAAATAATT-TATAAA
* *
8808102 AATATATAA-AA-TTA-AAA
1 AATTTAAAATAATTTATAAA
8808119 AATTTAAAA
1 AATTTAAAA
8808128 CTTTCTAAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
17 12 0.21
18 1 0.02
19 14 0.25
20 17 0.30
21 10 0.18
22 2 0.04
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.34
Consensus pattern (20 bp):
AATTTAAAATAATTTATAAA
Found at i:8810620 original size:78 final size:78
Alignment explanation
Indices: 8810156--8810616 Score: 626
Period size: 78 Copynumber: 6.0 Consensus size: 78
8810146 GGAAATTAAA
* * * ** *
8810156 AGTAAAATAAAAATTATTTCGGAATTGATTCTCGTTGTTCAA-GATTTTATTCCAAAATTGTTTT
1 AGTAAAATAAAAATTGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTTT
8810220 ATTTCCAAAAACG
66 ATTTCCAAAAACG
* *
8810233 AGTAAAAT-AAAATTGTTTCGGGATTGATTCCCACCGTTTAACGATTTTATTCCAAATTT-TTTT
1 AGTAAAATAAAAATTGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTTT
*
8810296 ATTTTCAAAAACG
66 ATTTCCAAAAACG
* * * *
8810309 AGTAAAAT-AAAATTGTTTTGGGATCGATTCCCGCCGTTCAATGTTTTTATTCCAAATTTGTTTT
1 AGTAAAATAAAAATTGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTTT
8810373 ATTTCCAAAAACG
66 ATTTCCAAAAACG
* * * * *
8810386 AGTAAAAT-AAAATCGTTTCGGGATAGATTCCCGCCGGTCAACAATTTTATTTCAAATTTGTTTT
1 AGTAAAATAAAAATTGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTTT
*
8810450 ATTTCCAAAAATG
66 ATTTCCAAAAACG
* * * * *
8810463 AGTAATATAAAAATTGTTTCGGGGTTGATTCCCGCCATTCAACAATTTTATTCCAAATTTATTTT
1 AGTAAAATAAAAATTGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTTT
*
8810528 ATTTCCAAAAATG
66 ATTTCCAAAAACG
* * * *
8810541 AGTAAAATAAAAATCGTTTCAGGATTGATTCCCGCCGTTCAACGATTTCATTCCAAATTTGGTTT
1 AGTAAAATAAAAATTGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTTT
8810606 ATTTCCAAAAA
66 ATTTCCAAAAA
8810617 TGAGAAATTA
Statistics
Matches: 339, Mismatches: 42, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
76 95 0.28
77 115 0.34
78 129 0.38
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (78 bp):
AGTAAAATAAAAATTGTTTCGGGATTGATTCCCGCCGTTCAACGATTTTATTCCAAATTTGTTTT
ATTTCCAAAAACG
Found at i:8816395 original size:70 final size:70
Alignment explanation
Indices: 8816276--8816531 Score: 287
Period size: 70 Copynumber: 3.7 Consensus size: 70
8816266 ATTGCGGATA
* * * * * *
8816276 ACAACTATCGTCAGTTATCTGACTAGCGCTGGGCGCAACAAGTTGTCGATTCATTCTACTAGTGC
1 ACAACTATCGTCAGTTATCTGACTAGCACTGGGCGCAATAATTTTTCGATTCGTTCGACTAGTGC
*
8816341 AGGGC
66 TGGGC
* * ** *
8816346 ACAACTATCGTCAGTTATTTGACCAGTGCTGGGTGCAATAATTTTTCGATTCGTTCGACTAGTGC
1 ACAACTATCGTCAGTTATCTGACTAGCACTGGGCGCAATAATTTTTCGATTCGTTCGACTAGTGC
8816411 TGGGC
66 TGGGC
* * * * * * * * * * *
8816416 ACAACTACCATCGGTTATCCGACTAGCATTGAGTGCAATAATTTATCGGTTCGTTCGACTAATGT
1 ACAACTATCGTCAGTTATCTGACTAGCACTGGGCGCAATAATTTTTCGATTCGTTCGACTAGTGC
8816481 TGGGC
66 TGGGC
* *
8816486 ACAACTATCGCCGGTTATCTGACTAGCACTGGGCGCAATAATTTTT
1 ACAACTATCGTCAGTTATCTGACTAGCACTGGGCGCAATAATTTTT
8816532 TCACTTGTTT
Statistics
Matches: 154, Mismatches: 32, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
70 154 1.00
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (70 bp):
ACAACTATCGTCAGTTATCTGACTAGCACTGGGCGCAATAATTTTTCGATTCGTTCGACTAGTGC
TGGGC
Found at i:8816982 original size:21 final size:21
Alignment explanation
Indices: 8816956--8816999 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
8816946 TAAATGATTG
8816956 TAAATGAATCTTTGAAGTGGT
1 TAAATGAATCTTTGAAGTGGT
8816977 TAAATGAATCTTTGAAGTGGT
1 TAAATGAATCTTTGAAGTGGT
8816998 TA
1 TA
8817000 TGTAAATGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.05, G:0.23, T:0.39
Consensus pattern (21 bp):
TAAATGAATCTTTGAAGTGGT
Found at i:8831653 original size:27 final size:26
Alignment explanation
Indices: 8831606--8831668 Score: 76
Period size: 27 Copynumber: 2.4 Consensus size: 26
8831596 ATAAACCATA
8831606 AACCCTAAA-CTTAACATGAACCTCG
1 AACCCTAAACCTTAACATGAACCTCG
*
8831631 AACCCTAAACTCTTAATC-TGAACCTTG
1 AACCCTAAAC-CTTAA-CATGAACCTCG
*
8831658 AACCATAAACC
1 AACCCTAAACC
8831669 CAAAACCTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
25 9 0.27
26 1 0.03
27 22 0.67
28 1 0.03
ACGTcount: A:0.40, C:0.32, G:0.06, T:0.22
Consensus pattern (26 bp):
AACCCTAAACCTTAACATGAACCTCG
Found at i:8842605 original size:35 final size:35
Alignment explanation
Indices: 8842564--8842722 Score: 201
Period size: 35 Copynumber: 4.5 Consensus size: 35
8842554 CTCTCTGTTT
** * * *
8842564 TGGTGTGTTTCAGTTGGACTAGCTCTTACGAGCAC
1 TGGTGTGTTTTGGATGGATTAGCTCTAACGAGCAC
* * *
8842599 TAGTGTGTTTTGGATGGATTAGCTCTAACGGGCAT
1 TGGTGTGTTTTGGATGGATTAGCTCTAACGAGCAC
*
8842634 TGGAGTGTTTTGGATGGATTAGCTCTAACGAGCAC
1 TGGTGTGTTTTGGATGGATTAGCTCTAACGAGCAC
* *
8842669 TGGTGTGTTTTGGATGGATTAGCTCTTATGAGCATC
1 TGGTGTGTTTTGGATGGATTAGCTCTAACGAGCA-C
*
8842705 TGGTGTGTTTCGGATGGA
1 TGGTGTGTTTTGGATGGA
8842723 ATACCAATGT
Statistics
Matches: 107, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
35 89 0.83
36 18 0.17
ACGTcount: A:0.18, C:0.13, G:0.32, T:0.36
Consensus pattern (35 bp):
TGGTGTGTTTTGGATGGATTAGCTCTAACGAGCAC
Found at i:8844429 original size:24 final size:24
Alignment explanation
Indices: 8844412--8844458 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
8844402 ATATTGGGTA
8844412 GCTCAAGAGAGCCAATATCGGGAT
1 GCTCAAGAGAGCCAATATCGGGAT
* * *
8844436 GCTCATGAGAGCTAATAACGGGA
1 GCTCAAGAGAGCCAATATCGGGA
8844459 CGATCTTACG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.34, C:0.19, G:0.30, T:0.17
Consensus pattern (24 bp):
GCTCAAGAGAGCCAATATCGGGAT
Found at i:8844797 original size:5 final size:5
Alignment explanation
Indices: 8844787--8844811 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
8844777 ATCAATTTAT
8844787 ATTCA ATTCA ATTCA ATTCA ATTCA
1 ATTCA ATTCA ATTCA ATTCA ATTCA
8844812 CATCTTTGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (5 bp):
ATTCA
Found at i:8850045 original size:20 final size:19
Alignment explanation
Indices: 8850016--8850055 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
8850006 ACCAAAAGAG
8850016 AAACCAAAAAAAAAGAAAA
1 AAACCAAAAAAAAAGAAAA
* *
8850035 AAACACAAAAATAAATAAAA
1 AAAC-CAAAAAAAAAGAAAA
8850055 A
1 A
8850056 TTAAATAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.82, C:0.10, G:0.03, T:0.05
Consensus pattern (19 bp):
AAACCAAAAAAAAAGAAAA
Found at i:8850708 original size:14 final size:14
Alignment explanation
Indices: 8850689--8850716 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8850679 TGTTAACAGA
8850689 CTAATTTTAGGGTT
1 CTAATTTTAGGGTT
8850703 CTAATTTTAGGGTT
1 CTAATTTTAGGGTT
8850717 ATGAGGGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.21, T:0.50
Consensus pattern (14 bp):
CTAATTTTAGGGTT
Found at i:8851217 original size:23 final size:24
Alignment explanation
Indices: 8851191--8851241 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 24
8851181 AATGTATTTT
* *
8851191 TTTAAATCTAGCATCA-TTTAATA
1 TTTAAATCTAACATCATTTTAAAA
*
8851214 TTTAAATTTAACATCATTTTAAAA
1 TTTAAATCTAACATCATTTTAAAA
8851238 TTTA
1 TTTA
8851242 TCATTAGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 14 0.58
24 10 0.42
ACGTcount: A:0.41, C:0.10, G:0.02, T:0.47
Consensus pattern (24 bp):
TTTAAATCTAACATCATTTTAAAA
Found at i:8855932 original size:101 final size:101
Alignment explanation
Indices: 8855757--8855956 Score: 310
Period size: 101 Copynumber: 2.0 Consensus size: 101
8855747 AATCACGCCT
** *
8855757 CAGCAGTTTCAGGCCGGTGCCTTAACGCCAATGAACTTCCAAGCCGGATCAGGATCTAACCCTAG
1 CAGCAGTTTCAGGCCGGTGCCCCAACGCCAATGAACTTCCAAGCCGGATCAGGATCTAACCCCAG
*
8855822 AGATAACCCCATTAATCTTGCTATCCTTGATTTCGA
66 AGATAACCCCATTAATCTTGCTATCCCTGATTTCGA
* * * * *
8855858 CAGCAGTTTTAGGCCGGTGCCCCAACGCCAATGAACTTCCAAGCTGGATTAGGCTTTAACCCCAG
1 CAGCAGTTTCAGGCCGGTGCCCCAACGCCAATGAACTTCCAAGCCGGATCAGGATCTAACCCCAG
*
8855923 AGATAACCCCATTAATCTTGTTATCCCTGATTTC
66 AGATAACCCCATTAATCTTGCTATCCCTGATTTC
8855957 AACGAAGTAG
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 89 1.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (101 bp):
CAGCAGTTTCAGGCCGGTGCCCCAACGCCAATGAACTTCCAAGCCGGATCAGGATCTAACCCCAG
AGATAACCCCATTAATCTTGCTATCCCTGATTTCGA
Found at i:8863834 original size:41 final size:42
Alignment explanation
Indices: 8863442--8864106 Score: 259
Period size: 44 Copynumber: 15.5 Consensus size: 42
8863432 CTTATATCTT
* * *
8863442 TGAAGTTGCAGAT--AGCAGATCGCAT-CTAGTCTTATCTCCC
1 TGAAGTTGCAG-TGGAGCAGATCGAATACCAATCTTATCTCCC
* * * * * *
8863482 TGAAGTTGTAGTCGAGTAGA-CTGAGAAAGCAAGTCTTATCCCCC
1 TGAAGTTGCAGTGGAGCAGATC-GA-ATACCAA-TCTTATCTCCC
* *** *
8863526 TGAAGTTGCAGTGGGGCAGA-CTGAAGATGGTGAACCTTATCTCCC
1 TGAAGTTGCAGTGGAGCAGATC-G-A-AT-ACCAATCTTATCTCCC
** ** *
8863571 TGAAGTTGCAGTGGAGCAGATTAAAGTCAATAATCCTATCTCCC
1 TGAAGTTGCAGTGGAGCAGATCGAA-T-ACCAATCTTATCTCCC
* * ** ** * * **
8863615 TGAAGTTGTAGCGGAGTGGATTAAAATGCCAGATCTTATATCTG
1 TGAAGTTGCAGTGGAGCAGA-TCGAATACCA-ATCTTATCTCCC
* ** * * *
8863659 TGAAGTTCCAG-AAAGCAGAT-TACAT-CCAGTCTTATCTCCT
1 TGAAGTTGCAGTGGAGCAGATCGA-ATACCAATCTTATCTCCC
* * *
8863699 TGAAGTTGCAGTAGAGCAGA-CAGAAAAAACCAATCCTATCTCCC
1 TGAAGTTGCAGTGGAGCAGATC-G--AATACCAATCTTATCTCCC
* * * * *
8863743 TGAAGTTGCAGTGGGGCGGAT-TAAAACCACAGGTCTTATCTCTC
1 TGAAGTTGCAGTGGAGCAGATCGAATACCA-A--TCTTATCTCCC
* * * * *
8863787 TAAAGTTACAGTAGAGCAGATCGCAT-CCAATCTTATCTCAC
1 TGAAGTTGCAGTGGAGCAGATCGAATACCAATCTTATCTCCC
*
8863828 TGAAGTTGCAGTGGAGCAGA-CAGAATAAACCAATCCTATCTCCC
1 TGAAGTTGCAGTGGAGCAGATC-GAAT--ACCAATCTTATCTCCC
* * ** * *
8863872 TGATGTTGCAGTGGAGCGGATTAAAATGA-CAGGTCTTATCTCTC
1 TGAAGTTGCAGTGGAGCAGA-TCGAAT-ACCA-ATCTTATCTCCC
* * * *
8863916 TGAAGTTGCAGTAGAGCAAATCGCAT-CCAGTCTTATCTCCC
1 TGAAGTTGCAGTGGAGCAGATCGAATACCAATCTTATCTCCC
* * *
8863957 TAAAGTTGCAGTGGAGCAGA-CAAAAGATAGCAAGTCTTATCTCCC
1 TGAAGTTGCAGTGGAGCAGATC--GA-ATACCAA-TCTTATCTCCC
* *
8864002 TGAAGTTGCAGTGGAGCAGA-CAGAAGATAGCAAGTCTTAT-TCTC
1 TGAAGTTGCAGTGGAGCAGATC-G-A-ATACCAA-TCTTATCTCCC
* * * * * *
8864046 TGAAGTTGCAATAGAGCAGACCGTAT-CCAGTCTTACCTCCC
1 TGAAGTTGCAGTGGAGCAGATCGAATACCAATCTTATCTCCC
* *
8864087 TGAAGTTACAGTCGAGCAGA
1 TGAAGTTGCAGTGGAGCAGA
8864107 CTGAAGATAG
Statistics
Matches: 471, Mismatches: 114, Indels: 79
0.71 0.17 0.12
Matches are distributed among these distances:
39 1 0.00
40 36 0.08
41 104 0.22
42 9 0.02
43 16 0.03
44 216 0.46
45 87 0.18
46 2 0.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (42 bp):
TGAAGTTGCAGTGGAGCAGATCGAATACCAATCTTATCTCCC
Found at i:8863847 original size:129 final size:127
Alignment explanation
Indices: 8863561--8864107 Score: 591
Period size: 129 Copynumber: 4.2 Consensus size: 127
8863551 GATGGTGAAC
* ** * *
8863561 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAA-TAATCCTATCTCCCTGAAGTTGTA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGA-CAAA-AAAACCAATCCTATCTCCCTGAAGTTGCA
* * * * * * * **
8863625 GCGGAGTGGATTAAAATGC-CAGATCTTATATCTGTGAAGTTCCAG-AAAGCAGATTACATCCAG
64 GTGGAGCGGATTAAAA--CACAGGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAG
8863688 T
127 T
* *
8863689 CTTATCTCCTTGAAGTTGCAGTAGAGCAGACAGAAAAAACCAATCCTATCTCCCTGAAGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACA-AAAAAACCAATCCTATCTCCCTGAAGTTGCAG
* * * *
8863754 TGGGGCGGATTAAAACCACAGGTCTTATCTCTCTAAAGTTACAGTAGAGCAGATCGCATCCAAT
65 TGGAGCGGATTAAAA-CACAGGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGT
* * *
8863818 CTTATCTCACTGAAGTTGCAGTGGAGCAGACAGAATAAACCAATCCTATCTCCCTGATGTTGCAG
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACA-AAAAAACCAATCCTATCTCCCTGAAGTTGCAG
* *
8863883 TGGAGCGGATTAAAATGACAGGTCTTATCTCTCTGAAGTTGCAGTAGAGCAAATCGCATCCAGT
65 TGGAGCGGATTAAAA-CACAGGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGT
* * * *
8863947 CTTATCTCCCTAAAGTTGCAGTGGAGCAGACAAAAGATAGCAAGTCTTATCTCCCTGAAGTTGCA
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAA-AAACCAA-TCCTATCTCCCTGAAGTTGCA
* * * * * * *
8864012 GTGGAGCAGA-CAGAAGATAGCAAGTCTTAT-TCTCTGAAGTTGCAATAGAGCAGACCGTATCCA
64 GTGGAGCGGATTA-AA-ACA-CAGGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCA
8864075 GT
126 GT
* * *
8864077 CTTACCTCCCTGAAGTTACAGTCGAGCAGAC
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGAC
8864108 TGAAGATAGC
Statistics
Matches: 359, Mismatches: 51, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
127 4 0.01
128 88 0.25
129 168 0.47
130 89 0.25
131 10 0.03
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.26
Consensus pattern (127 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGACAAAAAAACCAATCCTATCTCCCTGAAGTTGCAGT
GGAGCGGATTAAAACACAGGTCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCCAGT
Found at i:8863869 original size:85 final size:84
Alignment explanation
Indices: 8863688--8864107 Score: 241
Period size: 85 Copynumber: 4.9 Consensus size: 84
8863678 TTACATCCAG
* * * *
8863688 TCTTATCTCCTTGAAGTTGCAGTAGAGCAGA-CAGAAAAAACCAATCCTATCTCCCTGAAGTTGC
1 TCTTATCTCCCTAAAGTTGCAGTAGAGCAGATC-G---ATACCAATCTTATCTCCCTGAAGTTGC
* * **
8863752 AGTGGGGCGGA-TTAA-AACCACA
62 AGTGGAGCAGACAGAATAACCA-A
* * *
8863774 GGTCTTATCTCTCTAAAGTTACAGTAGAGCAGATCGCAT-CCAATCTTATCTCACTGAAGTTGCA
1 --TCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCG-ATACCAATCTTATCTCCCTGAAGTTGCA
8863838 GTGGAGCAGACAGAATAAACCAA
63 GTGGAGCAGACAGAAT-AACCAA
* * * * * ** * *
8863861 TCCTATCTCCCTGATGTTGCAGTGGAGCGGATTAAAATGA-CAGGTCTTATCTCTCTGAAGTTGC
1 TCTTATCTCCCTAAAGTTGCAGTAGAGCAGA-T-CGAT-ACCA-ATCTTATCTCCCTGAAGTTGC
* * * *
8863925 AGTAGAGCAAATC-GCAT--CCAG
62 AGTGGAGCAGA-CAGAATAACCAA
* *
8863946 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGA-CAAAAGATAGCAAGTCTTATCTCCCTGAAGTTG
1 TCTTATCTCCCTAAAGTTGCAGTAGAGCAGATC----GATACCAA-TCTTATCTCCCTGAAGTTG
* *
8864010 CAGTGGAGCAGACAGAAGATAGCAA
61 CAGTGGAGCAGACAGAATA-ACCAA
* * * * * * *
8864035 GTCTTAT-TCTCTGAAGTTGCAATAGAGCAGACCG-TATCCAGTCTTACCTCCCTGAAGTTACAG
1 -TCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCGATA-CCAATCTTATCTCCCTGAAGTTGCAG
*
8864098 TCGAGCAGAC
64 TGGAGCAGAC
8864108 TGAAGATAGC
Statistics
Matches: 259, Mismatches: 50, Indels: 49
0.72 0.14 0.14
Matches are distributed among these distances:
85 118 0.46
86 43 0.17
87 3 0.01
88 64 0.25
89 24 0.09
90 7 0.03
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.25
Consensus pattern (84 bp):
TCTTATCTCCCTAAAGTTGCAGTAGAGCAGATCGATACCAATCTTATCTCCCTGAAGTTGCAGTG
GAGCAGACAGAATAACCAA
Found at i:8867992 original size:17 final size:18
Alignment explanation
Indices: 8867961--8868000 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
8867951 AGCAAGCCAT
8867961 AAAG-AAAATAAAAACAA
1 AAAGTAAAATAAAAACAA
*
8867978 AAAGTAAAAT-AAAACTA
1 AAAGTAAAATAAAAACAA
8867995 AAAGTA
1 AAAGTA
8868001 GCTATATCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.75, C:0.05, G:0.07, T:0.12
Consensus pattern (18 bp):
AAAGTAAAATAAAAACAA
Found at i:8868072 original size:183 final size:180
Alignment explanation
Indices: 8867720--8868082 Score: 602
Period size: 180 Copynumber: 2.0 Consensus size: 180
8867710 ATCTCACAAA
* *
8867720 CTTTATAGAATCAAACTTTGAATATTACTTTTACTAGAATATTTAAAGTTTAGCAAGCCATAAAA
1 CTTTACAGAATCAAACTTTGAATATTACTTTGACTAGAATATTTAAAGTTTAGCAAGCCATAAAA
** * *
8867785 AAATAAAAAGTAAAAGTAAAATAAAACTTAAAACAGGTATATCACGTCTCTCTCTCTAAAAAGAT
66 AAATAAAAACAAAAAGTAAAATAAAACTTAAAACAGCTATATCACATCTCTCTCTCTAAAAAGAT
8867850 CATATTTATAGAGTTTATTTGACCTAAAATTAAGGTTATAATACTTGCTT
131 CATATTTATAGAGTTTATTTGACCTAAAATTAAGGTTATAATACTTGCTT
8867900 CTTTACAGAATCAAACTTTGAATATTACTTTGACTAGAATATTTAAAGTTTAGCAAGCCATAAAG
1 CTTTACAGAATCAAACTTTGAATATTACTTTGACTAGAATATTTAAAGTTTAGCAAGCCATAAA-
*
8867965 AAAATAAAAACAAAAAGTAAAATAAAAC-TAAAAGTAGCTATATCACATATCTCTCTCTCTAAAA
65 AAAATAAAAACAAAAAGTAAAATAAAACTTAAAA-CAGCTATATCAC--ATCTCTCTCTCTAAAA
* *
8868029 AGATCCTATTTATAGAGTTTATTTGACCTAAAATTAGGGTTATAATACTTGCTT
127 AGATCATATTTATAGAGTTTATTTGACCTAAAATTAAGGTTATAATACTTGCTT
8868083 AAGCTTAAAT
Statistics
Matches: 170, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
180 67 0.39
181 36 0.21
183 67 0.39
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.34
Consensus pattern (180 bp):
CTTTACAGAATCAAACTTTGAATATTACTTTGACTAGAATATTTAAAGTTTAGCAAGCCATAAAA
AAATAAAAACAAAAAGTAAAATAAAACTTAAAACAGCTATATCACATCTCTCTCTCTAAAAAGAT
CATATTTATAGAGTTTATTTGACCTAAAATTAAGGTTATAATACTTGCTT
Found at i:8869017 original size:53 final size:53
Alignment explanation
Indices: 8868958--8869809 Score: 1695
Period size: 53 Copynumber: 16.1 Consensus size: 53
8868948 ACTAATTATT
8868958 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
1 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
8869011 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
1 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
8869064 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
1 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
8869117 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
1 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
8869170 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
1 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
8869223 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
1 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
8869276 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
1 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
8869329 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
1 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
8869382 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
1 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
8869435 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
1 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
8869488 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
1 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
8869541 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
1 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
8869594 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
1 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
8869647 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
1 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
8869700 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
1 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
*
8869753 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCAAATTCAAATAATC
1 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
8869806 AAAA
1 AAAA
8869810 GTAATGGCAA
Statistics
Matches: 798, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 798 1.00
ACGTcount: A:0.51, C:0.13, G:0.09, T:0.26
Consensus pattern (53 bp):
AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
Found at i:8872086 original size:17 final size:18
Alignment explanation
Indices: 8872055--8872094 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
8872045 AGCAAGCCAT
8872055 AAAG-AAAATAAAAACAA
1 AAAGTAAAATAAAAACAA
*
8872072 AAAGTAAAAT-AAAACTA
1 AAAGTAAAATAAAAACAA
8872089 AAAGTA
1 AAAGTA
8872095 GCTATATCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 16 0.76
18 5 0.24
ACGTcount: A:0.75, C:0.05, G:0.07, T:0.12
Consensus pattern (18 bp):
AAAGTAAAATAAAAACAA
Found at i:8872166 original size:183 final size:180
Alignment explanation
Indices: 8871814--8872176 Score: 602
Period size: 180 Copynumber: 2.0 Consensus size: 180
8871804 ATCTCACAAA
* *
8871814 CTTTATAGAATCAAACTTTGAATATTACTTTTACTAGAATATTTAAAGTTTAGCAAGCCATAAAA
1 CTTTACAGAATCAAACTTTGAATATTACTTTGACTAGAATATTTAAAGTTTAGCAAGCCATAAAA
** * *
8871879 AAATAAAAAGTAAAAGTAAAATAAAACTTAAAACAGGTATATCACGTCTCTCTCTCTAAAAAGAT
66 AAATAAAAACAAAAAGTAAAATAAAACTTAAAACAGCTATATCACATCTCTCTCTCTAAAAAGAT
8871944 CATATTTATAGAGTTTATTTGACCTAAAATTAAGGTTATAATACTTGCTT
131 CATATTTATAGAGTTTATTTGACCTAAAATTAAGGTTATAATACTTGCTT
8871994 CTTTACAGAATCAAACTTTGAATATTACTTTGACTAGAATATTTAAAGTTTAGCAAGCCATAAAG
1 CTTTACAGAATCAAACTTTGAATATTACTTTGACTAGAATATTTAAAGTTTAGCAAGCCATAAA-
*
8872059 AAAATAAAAACAAAAAGTAAAATAAAAC-TAAAAGTAGCTATATCACATATCTCTCTCTCTAAAA
65 AAAATAAAAACAAAAAGTAAAATAAAACTTAAAA-CAGCTATATCAC--ATCTCTCTCTCTAAAA
* *
8872123 AGATCCTATTTATAGAGTTTATTTGACCTAAAATTAGGGTTATAATACTTGCTT
127 AGATCATATTTATAGAGTTTATTTGACCTAAAATTAAGGTTATAATACTTGCTT
8872177 AAGCTTAAAT
Statistics
Matches: 170, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
180 67 0.39
181 36 0.21
183 67 0.39
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.34
Consensus pattern (180 bp):
CTTTACAGAATCAAACTTTGAATATTACTTTGACTAGAATATTTAAAGTTTAGCAAGCCATAAAA
AAATAAAAACAAAAAGTAAAATAAAACTTAAAACAGCTATATCACATCTCTCTCTCTAAAAAGAT
CATATTTATAGAGTTTATTTGACCTAAAATTAAGGTTATAATACTTGCTT
Found at i:8873083 original size:29 final size:29
Alignment explanation
Indices: 8873051--8873136 Score: 76
Period size: 23 Copynumber: 3.1 Consensus size: 29
8873041 AACTAATTAT
8873051 TAAAAACTATATTTGGCAAATTAAAAGCA
1 TAAAAACTATATTTGGCAAATTAAAAGCA
* * * **
8873080 T-AAATC-A-A--T-GCGAATTCAAATAA
1 TAAAAACTATATTTGGCAAATTAAAAGCA
8873103 TCAAAAACTATATTTGGCAAATTAAAAGCA
1 T-AAAAACTATATTTGGCAAATTAAAAGCA
8873133 TAAA
1 TAAA
8873137 TCAATGCAAA
Statistics
Matches: 40, Mismatches: 10, Indels: 14
0.62 0.16 0.22
Matches are distributed among these distances:
23 11 0.28
24 1 0.03
25 4 0.10
26 2 0.05
27 2 0.05
28 4 0.10
29 5 0.12
30 11 0.28
ACGTcount: A:0.52, C:0.12, G:0.09, T:0.27
Consensus pattern (29 bp):
TAAAAACTATATTTGGCAAATTAAAAGCA
Found at i:8873111 original size:53 final size:53
Alignment explanation
Indices: 8873052--8873161 Score: 211
Period size: 53 Copynumber: 2.1 Consensus size: 53
8873042 ACTAATTATT
*
8873052 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCGAATTCAAATAATC
1 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCAAATTCAAATAATC
8873105 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCAAATTCAAATAATC
1 AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCAAATTCAAATAATC
8873158 AAAA
1 AAAA
8873162 GTAATGGCAA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 56 1.00
ACGTcount: A:0.54, C:0.13, G:0.08, T:0.25
Consensus pattern (53 bp):
AAAAACTATATTTGGCAAATTAAAAGCATAAATCAATGCAAATTCAAATAATC
Found at i:8875829 original size:13 final size:13
Alignment explanation
Indices: 8875809--8875945 Score: 84
Period size: 13 Copynumber: 10.3 Consensus size: 13
8875799 ATAAAGGCGT
8875809 AGTATATTAAAAC
1 AGTATATTAAAAC
*
8875822 AATATATTAAAAC
1 AGTATATTAAAAC
8875835 AGTATATTACATAA-
1 AGTATATTA-A-AAC
* *
8875849 A--AAAAT-AAAC
1 AGTATATTAAAAC
* *
8875859 GTGTAGTATTTATAAC
1 -AGTA-TA-TTAAAAC
*
8875875 AGTATATTAAAAT
1 AGTATATTAAAAC
* *
8875888 AATATATTTATAAC
1 AGTATA-TTAAAAC
8875902 AGTATATTAAAAC
1 AGTATATTAAAAC
* *
8875915 AATATATTAGAAC
1 AGTATATTAAAAC
*
8875928 AGTATATTTATAAC
1 AGTATA-TTAAAAC
8875942 AGTA
1 AGTA
8875946 CATTTCAAAT
Statistics
Matches: 93, Mismatches: 20, Indels: 21
0.69 0.15 0.16
Matches are distributed among these distances:
9 2 0.02
10 1 0.01
12 3 0.03
13 53 0.57
14 25 0.27
15 6 0.06
16 3 0.03
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.34
Consensus pattern (13 bp):
AGTATATTAAAAC
Found at i:8875895 original size:27 final size:27
Alignment explanation
Indices: 8875865--8875935 Score: 117
Period size: 27 Copynumber: 2.7 Consensus size: 27
8875855 AAACGTGTAG
*
8875865 TATTTATAACAGTATATTAAAATAATA
1 TATTTATAACAGTATATTAAAACAATA
8875892 TATTTATAACAGTATATTAAAACAATA
1 TATTTATAACAGTATATTAAAACAATA
*
8875919 TA-TTAGAACAGTATATT
1 TATTTATAACAGTATATT
8875936 TATAACAGTA
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
26 14 0.33
27 28 0.67
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.39
Consensus pattern (27 bp):
TATTTATAACAGTATATTAAAACAATA
Found at i:8891785 original size:17 final size:18
Alignment explanation
Indices: 8891759--8891792 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
8891749 GTTCTGTTCC
*
8891759 TTTTTTCTTTTT-ATTTG
1 TTTTTCCTTTTTCATTTG
8891776 TTTTTCCTTTTTCATTT
1 TTTTTCCTTTTTCATTT
8891793 TCCATCTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.06, C:0.12, G:0.03, T:0.79
Consensus pattern (18 bp):
TTTTTCCTTTTTCATTTG
Found at i:8891793 original size:24 final size:26
Alignment explanation
Indices: 8891755--8891807 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
8891745 AATTGTTCTG
*
8891755 TTCCTTTTTTCTTTT-TAT-TTGTTT
1 TTCCTTTTTTCTTTTCCATCTTGTTT
8891779 TTCC-TTTTTCATTTTCCATCTTGTTT
1 TTCCTTTTTTC-TTTTCCATCTTGTTT
8891805 TTC
1 TTC
8891808 TTAAAACAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 6 0.24
24 8 0.32
25 2 0.08
26 9 0.36
ACGTcount: A:0.06, C:0.19, G:0.04, T:0.72
Consensus pattern (26 bp):
TTCCTTTTTTCTTTTCCATCTTGTTT
Found at i:8899026 original size:36 final size:35
Alignment explanation
Indices: 8898986--8899111 Score: 109
Period size: 36 Copynumber: 3.7 Consensus size: 35
8898976 TACCGAATCT
8898986 TCCCAAGCTCCTAAACGAGATATCAACTCTTCTCAA
1 TCCCAAGCTCCTAAACGAGATATCAA-TCTTCTCAA
** * *
8899022 TCCCAAGCTCCTGCATGCGATATCAA--TTCT---
1 TCCCAAGCTCCTAAACGAGATATCAATCTTCTCAA
* * * *
8899052 TCCCAAGCTCCTAAACAAGGTATTAGGTCTTCTCAA
1 TCCCAAGCTCCTAAACGAGATATCA-ATCTTCTCAA
* *
8899088 TCCCAAGATCCTGAACGAGATATC
1 TCCCAAGCTCCTAAACGAGATATC
8899112 GAGTCTTCCC
Statistics
Matches: 67, Mismatches: 17, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
30 18 0.27
33 8 0.12
36 41 0.61
ACGTcount: A:0.30, C:0.31, G:0.13, T:0.26
Consensus pattern (35 bp):
TCCCAAGCTCCTAAACGAGATATCAATCTTCTCAA
Found at i:8899124 original size:30 final size:30
Alignment explanation
Indices: 8899088--8899154 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
8899078 GTCTTCTCAA
8899088 TCCCAAGATCCTGAACGAGATATCGAGTCT
1 TCCCAAGATCCTGAACGAGATATCGAGTCT
* * * * *
8899118 TCCCAAGCTCTTGAATGAGATATTGGGTCT
1 TCCCAAGATCCTGAACGAGATATCGAGTCT
*
8899148 TCTCAAG
1 TCCCAAG
8899155 TTCTTAAACA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.28
Consensus pattern (30 bp):
TCCCAAGATCCTGAACGAGATATCGAGTCT
Found at i:8899147 original size:66 final size:66
Alignment explanation
Indices: 8898983--8899153 Score: 198
Period size: 66 Copynumber: 2.6 Consensus size: 66
8898973 AAATACCGAA
* * ** * * * *
8898983 TCTTCCCAAGCTCCTAAACGAGATATCAACTCTTCTCAATCCCAAGCTCCTGCATGCGATATCAA
1 TCTTCCCAAGCTCCTAAACAAGATATTAGGTCTTCTCAATCCCAAGATCCTGAACGAGATATCAA
*
8899048 T
66 G
* *
8899049 TCTTCCCAAGCTCCTAAACAAGGTATTAGGTCTTCTCAATCCCAAGATCCTGAACGAGATATCGA
1 TCTTCCCAAGCTCCTAAACAAGATATTAGGTCTTCTCAATCCCAAGATCCTGAACGAGATATCAA
8899114 G
66 G
* * ** *
8899115 TCTTCCCAAGCTCTTGAATGAGATATTGGGTCTTCTCAA
1 TCTTCCCAAGCTCCTAAACAAGATATTAGGTCTTCTCAA
8899154 GTTCTTAAAC
Statistics
Matches: 88, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
66 88 1.00
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.29
Consensus pattern (66 bp):
TCTTCCCAAGCTCCTAAACAAGATATTAGGTCTTCTCAATCCCAAGATCCTGAACGAGATATCAA
G
Found at i:8902036 original size:37 final size:36
Alignment explanation
Indices: 8901965--8902429 Score: 269
Period size: 37 Copynumber: 12.7 Consensus size: 36
8901955 GTATCACTCA
* *
8901965 TTTGAGCAACTTTCAGTATAATCAATAGACATTGCTCT
1 TTTGAGC-ACTTT-AGTATATTCAGTAGACATTGCTCT
* *
8902003 TTTGAGCACGTTTAGTATATTCAGTAGATATTGCTCG
1 TTTGAGCAC-TTTAGTATATTCAGTAGACATTGCTCT
* * * * * * *
8902040 TTTGAGCCCATTCAATGTAATCAGTGGATATTGCT-T
1 TTTGAGCAC-TTTAGTATATTCAGTAGACATTGCTCT
*
8902076 GTTTGAGCAACTTTCAGTATAATT-AGTAGACAATGCTCT
1 -TTTGAGC-ACTTT-AGTAT-ATTCAGTAGACATTGCTCT
* * * * * *
8902115 TTTGAGCACATTCAGTAGATTCAATAGATATTTCTCG
1 TTTGAGCAC-TTTAGTATATTCAGTAGACATTGCTCT
* * *
8902152 TTTGAGCACATTCAGTATAATCAGTAGACATTGCTCA
1 TTTGAGCAC-TTTAGTATATTCAGTAGACATTGCTCT
* * * **
8902189 TTTGATC-CTATTCAGTATAATT-AGTGGATATCACT-T
1 TTTGAGCACT-TT-AGTAT-ATTCAGTAGACATTGCTCT
*
8902225 GTTTGAGCAACTTTTAGTATAATCAGTAGACATTGCTCT
1 -TTTGAGC-AC-TTTAGTATATTCAGTAGACATTGCTCT
* *
8902264 TTTGAGCA---T-GT-TA---AGTAGATATTGCTCG
1 TTTGAGCACTTTAGTATATTCAGTAGACATTGCTCT
* * *
8902292 TTTGAGCACATTCAGTATAATCAGAAGACATTGCT-T
1 TTTGAGCAC-TTTAGTATATTCAGTAGACATTGCTCT
* * * * *
8902328 GTTTGAGCCCATTCAGTATAATT-AGTAGATATCGCTCG
1 -TTTGAGCAC-TTTAGTAT-ATTCAGTAGACATTGCTCT
8902366 TTTGAGCAACTCTTAGTATAATT-AGTAGACATTGCTCT
1 TTTGAGC-ACT-TTAGTAT-ATTCAGTAGACATTGCTCT
8902404 TTTGAGCACGTTTAGTATATTCAGTA
1 TTTGAGCAC-TTTAGTATATTCAGTA
8902430 TTCCATTTTT
Statistics
Matches: 330, Mismatches: 64, Indels: 67
0.72 0.14 0.15
Matches are distributed among these distances:
28 21 0.06
31 2 0.01
32 2 0.01
33 3 0.01
34 2 0.01
35 1 0.00
36 8 0.02
37 194 0.59
38 89 0.27
39 7 0.02
40 1 0.00
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.38
Consensus pattern (36 bp):
TTTGAGCACTTTAGTATATTCAGTAGACATTGCTCT
Found at i:8902044 original size:75 final size:73
Alignment explanation
Indices: 8901883--8902429 Score: 450
Period size: 75 Copynumber: 7.4 Consensus size: 73
8901873 CAATGGATAA
* * * *
8901883 TGCTCGTTTGAGCATGCATTCCGTATAATCAATACATATTGCTCATTTGAGC-CTATTCAGTATA
1 TGCTCGTTTGAGCA--CATTCAGTATAATCAGTAGATATTGCTCGTTTGAGCACT-TT-AGTATA
* **
8901947 ATCAGTGGGTAT
62 ATCAGTAGACAT
** * * * * * *
8901959 CACTCATTTGAGCAACTTTCAGTATAATCAATAGACATTGCTCTTTTGAGCACGTTTAGTATATT
1 TGCTCGTTTGAGC-ACATTCAGTATAATCAGTAGATATTGCTCGTTTGAGCAC-TTTAGTATAAT
*
8902024 CAGTAGATAT
64 CAGTAGACAT
* * * * *
8902034 TGCTCGTTTGAGCCCATTCAATGTAATCAGTGGATATTGCTTGTTTGAGCAACTTTCAGTATAAT
1 TGCTCGTTTGAGCACATTCAGTATAATCAGTAGATATTGCTCGTTTGAGC-ACTTT-AGTATAAT
* *
8902099 TAGTAGACAA
64 CAGTAGACAT
* * * * * *
8902109 TGCTCTTTTGAGCACATTCAGTAGATTCAATAGATATTTCTCGTTTGAGCACATTCAGTATAATC
1 TGCTCGTTTGAGCACATTCAGTATAATCAGTAGATATTGCTCGTTTGAGCAC-TTTAGTATAATC
8902174 AGTAGACAT
65 AGTAGACAT
* * * * ** *
8902183 TGCTCATTTGATC-CTATTCAGTATAATTAGTGGATATCACTTGTTTGAGCAACTTTTAGTATAA
1 TGCTCGTTTGAGCAC-ATTCAGTATAATCAGTAGATATTGCTCGTTTGAGC-AC-TTTAGTATAA
8902247 TCAGTAGACAT
63 TCAGTAGACAT
* *
8902258 TGCTCTTTTGAG--CA-T--GT-T-A--AGTAGATATTGCTCGTTTGAGCACATTCAGTATAATC
1 TGCTCGTTTGAGCACATTCAGTATAATCAGTAGATATTGCTCGTTTGAGCAC-TTTAGTATAATC
*
8902314 AGAAGACAT
65 AGTAGACAT
* * * *
8902323 TGCTTGTTTGAGCCCATTCAGTATAATTAGTAGATATCGCTCGTTTGAGCAACTCTTAGTATAAT
1 TGCTCGTTTGAGCACATTCAGTATAATCAGTAGATATTGCTCGTTTGAGC-ACT-TTAGTATAAT
*
8902388 TAGTAGACAT
64 CAGTAGACAT
* * * *
8902398 TGCTCTTTTGAGCACGTTTAGTATATTCAGTA
1 TGCTCGTTTGAGCACATTCAGTATAATCAGTA
8902430 TTCCATTTTT
Statistics
Matches: 378, Mismatches: 74, Indels: 39
0.77 0.15 0.08
Matches are distributed among these distances:
65 31 0.08
66 18 0.05
67 2 0.01
68 2 0.01
69 1 0.00
70 4 0.01
71 1 0.00
72 2 0.01
73 2 0.01
74 110 0.29
75 190 0.50
76 13 0.03
77 2 0.01
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.37
Consensus pattern (73 bp):
TGCTCGTTTGAGCACATTCAGTATAATCAGTAGATATTGCTCGTTTGAGCACTTTAGTATAATCA
GTAGACAT
Found at i:8902081 original size:112 final size:111
Alignment explanation
Indices: 8901869--8902422 Score: 404
Period size: 112 Copynumber: 5.0 Consensus size: 111
8901859 TCATTTCGCC
* * * * * * * * *
8901869 TAATCAATGGATAATGCTCGTTTGAGCATGCATTCCGTATAATCAATACATATTGCTCATTTGAG
1 TAATCAATAGACATTGCTTGTTTGAGCA--CATTCAGTATATTCAGTAGATATTGCTCGTTTGAG
* * * * **
8901934 CCTATTCAGTATAATCAGTGGGTATCACTCATTTGAGCAACTTTCAGTA
64 CCCATTCAATATAATCAGTAGATATTGCTCATTTGAGC-ACTTTCAGTA
* *
8901983 TAATCAATAGACATTGCTCT-TTTGAGCACGTTTAGTATATTCAGTAGATATTGCTCGTTTGAGC
1 TAATCAATAGACATTGCT-TGTTTGAGCACATTCAGTATATTCAGTAGATATTGCTCGTTTGAGC
* * **
8902047 CCATTCAATGTAATCAGTGGATATTGCTTGTTTGAGCAACTTTCAGTA
65 CCATTCAATATAATCAGTAGATATTGCTCATTTGAGC-ACTTTCAGTA
* * * * * *
8902095 TAATTAGTAGACAATGCTCT-TTTGAGCACATTCAGTAGATTCAATAGATATTTCTCGTTTGAGC
1 TAATCAATAGACATTGCT-TGTTTGAGCACATTCAGTATATTCAGTAGATATTGCTCGTTTGAGC
* * * *
8902159 ACATTCAGTATAATCAGTAGACATTGCTCATTTGATC-CTATTCAGTA
65 CCATTCAATATAATCAGTAGATATTGCTCATTTGAGCACT-TTCAGTA
* * * * ** * * * * *
8902206 TAATTAGTGGATATCACTTGTTTGAGCAACTTTTAGTATAATCAGTAGACATTGCTCTTTTGAG-
1 TAATCAATAGACATTGCTTGTTTGAGC-ACATTCAGTATATTCAGTAGATATTGCTCGTTTGAGC
* * *
8902270 -CA-T--GT-T-A--AGTAGATATTGCTCGTTTGAGCACATTCAGTA
65 CCATTCAATATAATCAGTAGATATTGCTCATTTGAGCACTTTCAGTA
* *
8902309 TAATCAGA-AGACATTGCTTGTTTGAGCCCATTCAGTATAATT-AGTAGATATCGCTCGTTTGAG
1 TAATCA-ATAGACATTGCTTGTTTGAGCACATTCAGTAT-ATTCAGTAGATATTGCTCGTTTGAG
* * * *
8902372 CAACTC-TT-AGTATAATTAGTAGACATTGCTCTTTTGAGCACGTTT-AGTA
64 C--C-CATTCAATATAATCAGTAGATATTGCTCATTTGAGCAC-TTTCAGTA
8902421 TA
1 TA
8902423 TTCAGTATTC
Statistics
Matches: 353, Mismatches: 68, Indels: 40
0.77 0.15 0.09
Matches are distributed among these distances:
102 26 0.07
103 48 0.14
104 1 0.00
105 1 0.00
106 1 0.00
107 4 0.01
108 2 0.01
109 2 0.01
110 6 0.02
111 27 0.08
112 210 0.59
113 2 0.01
114 23 0.07
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (111 bp):
TAATCAATAGACATTGCTTGTTTGAGCACATTCAGTATATTCAGTAGATATTGCTCGTTTGAGCC
CATTCAATATAATCAGTAGATATTGCTCATTTGAGCACTTTCAGTA
Found at i:8902308 original size:28 final size:28
Alignment explanation
Indices: 8902247--8902308 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 28
8902237 TTTAGTATAA
* **
8902247 TCAGTAGACATTGCTCTTTTGAGCATGT
1 TCAGTAGACATTGCTCGTTTGAGCACAT
* *
8902275 TAAGTAGATATTGCTCGTTTGAGCACAT
1 TCAGTAGACATTGCTCGTTTGAGCACAT
8902303 TCAGTA
1 TCAGTA
8902309 TAATCAGAAG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (28 bp):
TCAGTAGACATTGCTCGTTTGAGCACAT
Found at i:8902323 original size:140 final size:140
Alignment explanation
Indices: 8902139--8902420 Score: 447
Period size: 140 Copynumber: 2.0 Consensus size: 140
8902129 GTAGATTCAA
* * * *
8902139 TAGATATTTCTCGTTTGAGCACATTCAGTATAATCAGTAGACATTGCTCATTTGATCCTATTCAG
1 TAGATATTGCTCGTTTGAGCACATTCAGTATAATCAGAAGACATTGCTCATTTGAGCCCATTCAG
* * *
8902204 TATAATTAGTGGATATCACTTGTTTGAGCAACTTTTAGTATAATCAGTAGACATTGCTCTTTTGA
66 TATAATTAGTAGATATCACTCGTTTGAGCAACTCTTAGTATAATCAGTAGACATTGCTCTTTTGA
*
8902269 GCATGTTAAG
131 GCACGTTAAG
**
8902279 TAGATATTGCTCGTTTGAGCACATTCAGTATAATCAGAAGACATTGCTTGTTTGAGCCCATTCAG
1 TAGATATTGCTCGTTTGAGCACATTCAGTATAATCAGAAGACATTGCTCATTTGAGCCCATTCAG
* *
8902344 TATAATTAGTAGATATCGCTCGTTTGAGCAACTCTTAGTATAATTAGTAGACATTGCTCTTTTGA
66 TATAATTAGTAGATATCACTCGTTTGAGCAACTCTTAGTATAATCAGTAGACATTGCTCTTTTGA
*
8902409 GCACGTTTAG
131 GCACGTTAAG
8902419 TA
1 TA
8902421 TATTCAGTAT
Statistics
Matches: 129, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
140 129 1.00
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (140 bp):
TAGATATTGCTCGTTTGAGCACATTCAGTATAATCAGAAGACATTGCTCATTTGAGCCCATTCAG
TATAATTAGTAGATATCACTCGTTTGAGCAACTCTTAGTATAATCAGTAGACATTGCTCTTTTGA
GCACGTTAAG
Found at i:8902420 original size:177 final size:177
Alignment explanation
Indices: 8902100--8902429 Score: 407
Period size: 177 Copynumber: 1.9 Consensus size: 177
8902090 CAGTATAATT
* * * *
8902100 AGTAGACAATGCTCTTTTGAGCACATTCAGTAGATTCAATAGATATTTCTCGTTTGAGCACATTC
1 AGTAGACAATGCTCGTTTGAGCACATTCAGTAGAATCAATAGACATTGCTCGTTTGAGCACATTC
* * * *
8902165 AGTATAATCAGTAGACATTGCTCATTTGATCCTATTCAGTATAATTAGTGGATATCACTTGTTTG
66 AGTATAATCAGTAGACATCGCTCATTTGAGCCTATTCAGTATAATTAGTAGACATCACTTGTTTG
*
8902230 AGCAACTTTTAGTATAATCAGTAGACATTGCTCTTTTGAGCATGTTA
131 AGCAACGTTTAGTATAATCAGTAGACATTGCTCTTTTGAGCATGTTA
* * * * *
8902277 AGTAGATATTGCTCGTTTGAGCACATTCAGTATAATCAGA-AGACATTGCTTGTTTGAGCCCATT
1 AGTAGACAATGCTCGTTTGAGCACATTCAGTAGAATCA-ATAGACATTGCTCGTTTGAGCACATT
* * * * **
8902341 CAGTATAATTAGTAGATATCGCTCGTTTGAGCAACTCTT-AGTATAATTAGTAGACATTGCTCT-
65 CAGTATAATCAGTAGACATCGCTCATTTGAGC--CTATTCAGTATAATTAGTAGACATCACT-TG
*
8902404 TTTGAGC-ACGTTTAGTATATTCAGTA
127 TTTGAGCAACGTTTAGTATAATCAGTA
8902430 TTCCATTTTT
Statistics
Matches: 128, Mismatches: 21, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
177 97 0.76
178 26 0.20
179 5 0.04
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37
Consensus pattern (177 bp):
AGTAGACAATGCTCGTTTGAGCACATTCAGTAGAATCAATAGACATTGCTCGTTTGAGCACATTC
AGTATAATCAGTAGACATCGCTCATTTGAGCCTATTCAGTATAATTAGTAGACATCACTTGTTTG
AGCAACGTTTAGTATAATCAGTAGACATTGCTCTTTTGAGCATGTTA
Found at i:8910055 original size:69 final size:69
Alignment explanation
Indices: 8909934--8910067 Score: 198
Period size: 69 Copynumber: 1.9 Consensus size: 69
8909924 TACCAACCAA
* *
8909934 CTACAAAATTTGAAAGGTTAGTATATAAAATTGAAATATGCCAACTCAAAAGATGTTAAGTGAAG
1 CTACAAAATTTGAAAGATTAGTATATAAAATTGAAATATGCCAACTCAAAAGATATTAAGTGAAG
8909999 TTGC
66 TTGC
* ** *
8910003 CTACAAAATTTGAAAGATTAGTATATAAAATTGAAATGTGTTAGCCTC-AAAGATATTAAGTGAA
1 CTACAAAATTTGAAAGATTAGTATATAAAATTGAAATATGCCA-ACTCAAAAGATATTAAGTGAA
8910067 G
65 G
8910068 CTGTCATTAG
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
69 55 0.95
70 3 0.05
ACGTcount: A:0.44, C:0.09, G:0.17, T:0.30
Consensus pattern (69 bp):
CTACAAAATTTGAAAGATTAGTATATAAAATTGAAATATGCCAACTCAAAAGATATTAAGTGAAG
TTGC
Found at i:8917217 original size:68 final size:68
Alignment explanation
Indices: 8917133--8917277 Score: 166
Period size: 68 Copynumber: 2.1 Consensus size: 68
8917123 TTCGCATAAA
* * * ** * *
8917133 GGTTCGCATACATCAAGAGGATTCGCCTATGGGGGTTTTCATGCAAG-GTTTTACACATGCAAAT
1 GGTTCACATGCATCAAGAGGATTCGCCTATAGAAGATTTCATGCAAGCG-TTCACACATGCAAAT
8917197 AGAG
65 AGAG
* * * *
8917201 GGTTTACATGCATCAAGTGGGTTCGCCTATAGAAGATTTCATGCAAGCGTTCGCACATGCAAATA
1 GGTTCACATGCATCAAGAGGATTCGCCTATAGAAGATTTCATGCAAGCGTTCACACATGCAAATA
*
8917266 GGG
66 GAG
8917269 GGTTCACAT
1 GGTTCACAT
8917278 AAGGGTTCGC
Statistics
Matches: 63, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
68 62 0.98
69 1 0.02
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.28
Consensus pattern (68 bp):
GGTTCACATGCATCAAGAGGATTCGCCTATAGAAGATTTCATGCAAGCGTTCACACATGCAAATA
GAG
Found at i:8917310 original size:80 final size:80
Alignment explanation
Indices: 8917207--8917365 Score: 230
Period size: 80 Copynumber: 2.0 Consensus size: 80
8917197 AGAGGGTTTA
*
8917207 CATGCATCAAGTGGGTTCGCCTATAGAAGATTTCATGCAAGCGTTCGCACATGCAAATAGGGGGT
1 CATGCATCAAGTGGGTTCGCCTATAGAAGATTTCATGCAAGCGTTCGCACATGCAAACAGGGGGT
8917272 TCACATAAGGGTTCG
66 TCACATAAGGGTTCG
* * ** * *
8917287 CATGCATCAAG-GGGCTTCTCCTATGGGGGATTTCATGCAAGGGTTCGCATATGCAAACAGGGGG
1 CATGCATCAAGTGGG-TTCGCCTATAGAAGATTTCATGCAAGCGTTCGCACATGCAAACAGGGGG
*
8917351 TTCGCATAAGGGTTC
65 TTCACATAAGGGTTC
8917366 ATGCACGATC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
79 3 0.04
80 67 0.96
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (80 bp):
CATGCATCAAGTGGGTTCGCCTATAGAAGATTTCATGCAAGCGTTCGCACATGCAAACAGGGGGT
TCACATAAGGGTTCG
Found at i:8917341 original size:148 final size:149
Alignment explanation
Indices: 8917070--8917352 Score: 361
Period size: 148 Copynumber: 1.9 Consensus size: 149
8917060 TACATTAAAG
** * * *
8917070 GGGTTCACCTATAGGGGATTTCATACAATAGTTTGCACATGCAAACAAGGAGGTTCGCATAAAGG
1 GGGTTCACCTATAGAAGATTTCATACAAGAGTTCGCACATGCAAACAAGGAGGTTCACATAAAGG
* * * *
8917135 TTCGCATACATCAAGAGGATTCGCCTATGGGGGTTTTCATGCAAGGTTTTACACATGCAAATAGA
66 TTCGCATACATCAAGAGGATTCGCCTATGGGGGATTTCATGCAAGGGTTCACACATGCAAACAGA
8917200 GGGTTTACATGCATCAAGT
131 GGGTTTACATGCATCAAGT
* * * * * *
8917219 GGGTTCGCCTATAGAAGATTTCATGCAAGCGTTCGCACATGCAAA-TAGGGGGTTCACATAAGGG
1 GGGTTCACCTATAGAAGATTTCATACAAGAGTTCGCACATGCAAACAAGGAGGTTCACATAAAGG
* * * * * * *
8917283 TTCGCATGCATCAAGGGGCTTCTCCTATGGGGGATTTCATGCAAGGGTTCGCATATGCAAACAGG
66 TTCGCATACATCAAGAGGATTCGCCTATGGGGGATTTCATGCAAGGGTTCACACATGCAAACAGA
8917348 GGGTT
131 GGGTT
8917353 CGCATAAGGG
Statistics
Matches: 112, Mismatches: 22, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
148 74 0.66
149 38 0.34
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.27
Consensus pattern (149 bp):
GGGTTCACCTATAGAAGATTTCATACAAGAGTTCGCACATGCAAACAAGGAGGTTCACATAAAGG
TTCGCATACATCAAGAGGATTCGCCTATGGGGGATTTCATGCAAGGGTTCACACATGCAAACAGA
GGGTTTACATGCATCAAGT
Found at i:8929785 original size:13 final size:13
Alignment explanation
Indices: 8929767--8929791 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8929757 ATTTATTATT
8929767 TTATTTATTTTAG
1 TTATTTATTTTAG
8929780 TTATTTATTTTA
1 TTATTTATTTTA
8929792 ATTGTTTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (13 bp):
TTATTTATTTTAG
Found at i:8934561 original size:83 final size:83
Alignment explanation
Indices: 8934474--8934660 Score: 284
Period size: 83 Copynumber: 2.3 Consensus size: 83
8934464 TAGTCTACTC
** * * *
8934474 CACTGCAACTTCAGGGAGATAACACTAGATGCGATCTGCTCTCTGCAACTTCAGAAAGATAAGAT
1 CACTGCAACTTCAGCAAGATAAAACTAAATACGATCTGCTCTCTGCAACTTCAGAAAGATAAGAT
8934539 CTAAGGTTTTAATCCGCT
66 CTAAGGTTTTAATCCGCT
* * *
8934557 CACTGCAACTTTAGCAAGATAAAACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATGAGAT
1 CACTGCAACTTCAGCAAGATAAAACTAAATACGATCTGCTCTCTGCAACTTCAGAAAGATAAGAT
8934622 CTAAGGTTTTAATCCGCT
66 CTAAGGTTTTAATCCGCT
* *
8934640 TACTGCAACTTCAGCTAGATA
1 CACTGCAACTTCAGCAAGATA
8934661 GGATTATCGG
Statistics
Matches: 93, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
83 93 1.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (83 bp):
CACTGCAACTTCAGCAAGATAAAACTAAATACGATCTGCTCTCTGCAACTTCAGAAAGATAAGAT
CTAAGGTTTTAATCCGCT
Found at i:8934577 original size:43 final size:43
Alignment explanation
Indices: 8934511--8934708 Score: 163
Period size: 43 Copynumber: 4.7 Consensus size: 43
8934501 GATGCGATCT
* *
8934511 GCTCTCTGCAACTTCAGAAAGATAAGATCTAAGGTTTTAATCC
1 GCTCACTGCAACTTCAGCAAGATAAGATCTAAGGTTTTAATCC
* * * *** *
8934554 GCTCACTGCAACTTTAGCAAGATAA-AACTAA--ATACGATCT
1 GCTCACTGCAACTTCAGCAAGATAAGATCTAAGGTTTTAATCC
* *
8934594 GCTCTCTGCAACTTCAG-AGAGATGAGATCTAAGGTTTTAATCC
1 GCTCACTGCAACTTCAGCA-AGATAAGATCTAAGGTTTTAATCC
* * * * * *
8934637 GCTTACTGCAACTTCAGCTAGATAGGAT-TATCGGCTTTAATCT
1 GCTCACTGCAACTTCAGCAAGATAAGATCTA-AGGTTTTAATCC
**
8934680 GCTTCACTGCAACTTCAGGGAGATAAGAT
1 GC-TCACTGCAACTTCAGCAAGATAAGAT
8934709 TTGCCCTCTT
Statistics
Matches: 118, Mismatches: 30, Indels: 13
0.73 0.19 0.08
Matches are distributed among these distances:
39 1 0.01
40 24 0.20
41 5 0.04
42 7 0.06
43 59 0.50
44 22 0.19
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.29
Consensus pattern (43 bp):
GCTCACTGCAACTTCAGCAAGATAAGATCTAAGGTTTTAATCC
Found at i:8934802 original size:299 final size:298
Alignment explanation
Indices: 8934263--8934876 Score: 978
Period size: 299 Copynumber: 2.1 Consensus size: 298
8934253 ACTCCTGGTG
** *
8934263 CAACTTCAGGGAGATAAGACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAG
1 CAACTTCAGCAAGATAAAACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAG
*
8934328 GTTTTAATCCACTCCTCTGCAACTTCAGGAAGATAGGATTATCGACTTTAATCTGCTCCACTGCA
66 GTTTTAATCCACT-CTCTGCAACTTCAGCAAGATAGGATTATCGACTTTAATCTGCTCCACTGCA
* *
8934393 ACTTCAGTGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTT
130 ACTTCAGGGAGATAAGATTTGCCATCTTCAGTCCGCCTCACTGCAACTTCAGGAGGATAAGACTT
* * *
8934458 GCTACTTAGTCTACTCCACTGCAACTTCAGGGAGATAACACTAGATGCGATCTGCTCTCTGCAAC
195 GCTACTTAGTCTACTCCACTGCAACTTCAAGGAGATAACACTAGATACGATCTGATCTCTGCAAC
* * *
8934523 TTCAGAAAGATAAGATCTAAGGTTTTAATCCGCTCACTG
260 TTCAGAAAGATAAGACCTAAGGTTTCAATCCGCTCACTC
* *
8934562 CAACTTTAGCAAGATAAAACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATGAGATCTAAG
1 CAACTTCAGCAAGATAAAACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAG
* * * *
8934627 GTTTTAATCCGCT-TACTGCAACTTCAGCTAGATAGGATTATCGGCTTTAATCTGCTTCACTGCA
66 GTTTTAATCCACTCT-CTGCAACTTCAGCAAGATAGGATTATCGACTTTAATCTGCTCCACTGCA
* *
8934691 ACTTCAGGGAGATAAGATTTGCCCTCTTCAGTCCGTCTCACTGCAACTTCAGGAGGATAAGACTT
130 ACTTCAGGGAGATAAGATTTGCCATCTTCAGTCCGCCTCACTGCAACTTCAGGAGGATAAGACTT
* *
8934756 GCCTACTTAGTCTGCTCCACTGCAACTTCAAGGAGATAAGACTAGATACGATCTGATCTCTGCAA
195 G-CTACTTAGTCTACTCCACTGCAACTTCAAGGAGATAACACTAGATACGATCTGATCTCTGCAA
*
8934821 CTTCAGAGAGATAAGACCTAAGGTTTCAATCCGCTCACTC
259 CTTCAGAAAGATAAGACCTAAGGTTTCAATCCGCTCACTC
*
8934861 CAACTTCAGCGAGATA
1 CAACTTCAGCAAGATA
8934877 GGATTATCGG
Statistics
Matches: 288, Mismatches: 25, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
297 1 0.00
298 107 0.37
299 180 0.62
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (298 bp):
CAACTTCAGCAAGATAAAACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTAAG
GTTTTAATCCACTCTCTGCAACTTCAGCAAGATAGGATTATCGACTTTAATCTGCTCCACTGCAA
CTTCAGGGAGATAAGATTTGCCATCTTCAGTCCGCCTCACTGCAACTTCAGGAGGATAAGACTTG
CTACTTAGTCTACTCCACTGCAACTTCAAGGAGATAACACTAGATACGATCTGATCTCTGCAACT
TCAGAAAGATAAGACCTAAGGTTTCAATCCGCTCACTC
Found at i:8934818 original size:216 final size:216
Alignment explanation
Indices: 8934573--8935014 Score: 713
Period size: 216 Copynumber: 2.0 Consensus size: 216
8934563 AACTTTAGCA
* * * * *
8934573 AGATAAAACTAAATACGATCTGCTCTCTGCAACTTCAGAGAGATGAGATCTAAGGTTTTAATCCG
1 AGATAAGACTAAATACGATCTGATCTCTGCAACTTCAGAGAGATAAGACCTAAGGTTTCAATCCG
* * * * *
8934638 CTTACTGCAACTTCAGCTAGATAGGATTATCGGCTTTAATCTGCTTCACTGCAACTTCAGGGAGA
66 CTCACTCCAACTTCAGCGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGA
* * *
8934703 TAAGATTTGCCCTCTTCAGTCCGTCTCACTGCAACTTCAGGAGGATAAGACTTGCCTACTTAGTC
131 TAAGATTTGCCATCTTCAGTCCGCCTCACCGCAACTTCAGGAGGATAAGACTTGCCTACTTAGTC
8934768 TGCTCCACTGCAACTTCAAGG
196 TGCTCCACTGCAACTTCAAGG
*
8934789 AGATAAGACTAGATACGATCTGATCTCTGCAACTTCAGAGAGATAAGACCTAAGGTTTCAATCCG
1 AGATAAGACTAAATACGATCTGATCTCTGCAACTTCAGAGAGATAAGACCTAAGGTTTCAATCCG
* *
8934854 CTCACTCCAACTTCAGCGAGATAGGATTATCGGCTTTAATCTGCTCCACTGTAATTTCAGAGAGA
66 CTCACTCCAACTTCAGCGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGA
*
8934919 TAAGATTTGCCATCTTCAGTCTGCCTCACCGCAACTTCAGGAGGATAAGACTTGCCTACTTAGTC
131 TAAGATTTGCCATCTTCAGTCCGCCTCACCGCAACTTCAGGAGGATAAGACTTGCCTACTTAGTC
* *
8934984 TGCTCCATTGCAACTTCAGGG
196 TGCTCCACTGCAACTTCAAGG
8935005 AGATAAGACT
1 AGATAAGACT
8935015 CGATCTGTTA
Statistics
Matches: 207, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
216 207 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (216 bp):
AGATAAGACTAAATACGATCTGATCTCTGCAACTTCAGAGAGATAAGACCTAAGGTTTCAATCCG
CTCACTCCAACTTCAGCGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGAGAGA
TAAGATTTGCCATCTTCAGTCCGCCTCACCGCAACTTCAGGAGGATAAGACTTGCCTACTTAGTC
TGCTCCACTGCAACTTCAAGG
Found at i:8934999 original size:44 final size:45
Alignment explanation
Indices: 8934339--8935014 Score: 219
Period size: 44 Copynumber: 15.7 Consensus size: 45
8934329 TTTTAATCCA
* * ** * *
8934339 CTCCTCTGCAACTTCAGGA-AGATAGGA-TTATCGACTTTAATCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTGCCTAC-TTAGTCTG
* *
8934383 CTCCACTGCAACTTCA-GTGAGATAAGATTTGCC-ATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTGCCTA-CTT-AGTCTG
*
8934428 C-CTCACTGCAACTTCAGGAG-GATAAGACTTG-CTACTTAGTCTA
1 CTC-CACTGCAACTTCAGGAGAGATAAGACTTGCCTACTTAGTCTG
* * * * *
8934471 CTCCACTGCAACTTCAGG-GAGATAACACTAG-ATGC-GA-TCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTGCCTACTTAGTCTG
* * * * * * *
8934512 CT-CTCTGCAACTTCA-GAAAGATAAGATCTAAG-GT-TTTAATCCG
1 CTCCACTGCAACTTCAGGAGAGATAAGA-CT-TGCCTACTTAGTCTG
* * * *** *
8934555 CT-CACTGCAACTTTAGCA-AGATAAAAC-TAAATAC-GA-TCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTGCCTACTTAGTCTG
* * * * * * *
8934595 CT-CTCTGCAACTTCA-GAGAGATGAGATCTAAG-GT-TTTAATCCG
1 CTCCACTGCAACTTCAGGAGAGATAAGA-CT-TGCCTACTTAGTCTG
* ** * * * *
8934638 CT-TACTGCAACTTCA-GCTAGATAGGATTATCGGCT--TTAATCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACT-T-GCCTACTTAGTCTG
* * *
8934681 CTTCACTGCAACTTCAGG-GAGATAAGATTTGCCCT-CTTCAGTCCG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTG-CCTACTT-AGTCTG
8934726 -TCTCACTGCAACTTCAGGAG-GATAAGACTTGCCTACTTAGTCTG
1 CTC-CACTGCAACTTCAGGAGAGATAAGACTTGCCTACTTAGTCTG
* * * *
8934770 CTCCACTGCAACTTCAAG-GAGATAAGACTAG-ATAC-GA-TCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTGCCTACTTAGTCTG
* * * * * *
8934811 AT-CTCTGCAACTTCA-GAGAGATAAGACCTAAG-GT--TTCAATCCG
1 CTCCACTGCAACTTCAGGAGAGATAAGA-CT-TGCCTACTT-AGTCTG
* * * * * *
8934854 CT-CACTCCAACTTCA-GCGAGATAGGATTATCGGCT--TTAATCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACT-T-GCCTACTTAGTCTG
* * *
8934897 CTCCACTGTAATTTCA-GAGAGATAAGATTTGCC-ATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGAGAGATAAGACTTGCCTA-CTT-AGTCTG
*
8934942 C-CTCACCGCAACTTCAGGAG-GATAAGACTTGCCTACTTAGTCTG
1 CTC-CACTGCAACTTCAGGAGAGATAAGACTTGCCTACTTAGTCTG
*
8934986 CTCCATTGCAACTTCAGG-GAGATAAGACT
1 CTCCACTGCAACTTCAGGAGAGATAAGACT
8935015 CGATCTGTTA
Statistics
Matches: 486, Mismatches: 93, Indels: 106
0.71 0.14 0.15
Matches are distributed among these distances:
39 3 0.01
40 62 0.13
41 17 0.03
42 21 0.04
43 130 0.27
44 145 0.30
45 101 0.21
46 7 0.01
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (45 bp):
CTCCACTGCAACTTCAGGAGAGATAAGACTTGCCTACTTAGTCTG
Found at i:8946333 original size:98 final size:98
Alignment explanation
Indices: 8946170--8947132 Score: 1791
Period size: 98 Copynumber: 9.8 Consensus size: 98
8946160 CAATGAAAAC
* * * **** *
8946170 TTAAAAGAATATCCATTTATTCAAGATTTAAGAAATTGTGGCCCAATACGTTAGGGCACAATTCC
1 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAA-TCACACCCAATACGTTAGGGCACGATTCC
* *
8946235 TCCAAAATCCCAAACTCGGAATATTTCCTTTACT
65 TCTAGAATCCCAAACTCGGAATATTTCCTTTACT
8946269 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
1 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
8946334 CTAGAATCCCAAACTCGGAATATTTCCTTTACT
66 CTAGAATCCCAAACTCGGAATATTTCCTTTACT
8946367 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
1 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
8946432 CTAGAATCCCAAACTCGGAATATTTCCTTTACT
66 CTAGAATCCCAAACTCGGAATATTTCCTTTACT
8946465 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
1 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
8946530 CTAGAATCCCAAACTCGGAATATTTCCTTTACT
66 CTAGAATCCCAAACTCGGAATATTTCCTTTACT
8946563 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
1 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
8946628 CTAGAATCCCAAACTCGGAATATTTCCTTTACT
66 CTAGAATCCCAAACTCGGAATATTTCCTTTACT
8946661 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
1 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
8946726 CTAGAATCCCAAACTCGGAATATTTCCTTTACT
66 CTAGAATCCCAAACTCGGAATATTTCCTTTACT
8946759 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
1 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
8946824 CTAGAATCCCAAACTCGGAATATTTCCTTTACT
66 CTAGAATCCCAAACTCGGAATATTTCCTTTACT
8946857 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
1 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
8946922 CTAGAATCCCAAACTCGGAATATTTCCTTTACT
66 CTAGAATCCCAAACTCGGAATATTTCCTTTACT
8946955 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
1 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
8947020 CTAGAATCCCAAACTCGGAATATTTCCTTTACT
66 CTAGAATCCCAAACTCGGAATATTTCCTTTACT
* *
8947053 TTAAAAGAACATCCATTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCCT
1 TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
* *
8947118 TTAAAATCCCAAACT
66 CTAGAATCCCAAACT
8947133 NNNNNNNNNN
Statistics
Matches: 850, Mismatches: 14, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
98 818 0.96
99 32 0.04
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.28
Consensus pattern (98 bp):
TTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATTCCT
CTAGAATCCCAAACTCGGAATATTTCCTTTACT
Found at i:8956127 original size:34 final size:31
Alignment explanation
Indices: 8956085--8956166 Score: 103
Period size: 34 Copynumber: 2.6 Consensus size: 31
8956075 GGAATATCTA
*
8956085 AATATATTATATATCTTTTGGGTATATATTTAAG
1 AATATATTATATATCTTTT---CATATATTTAAG
*
8956119 AATATATTATATATCTTTTCATATATTTAGG
1 AATATATTATATATCTTTTCATATATTTAAG
*
8956150 AAT-TATCATATATCTTT
1 AATATATTATATATCTTT
8956167 CCTATAAATA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
30 13 0.29
31 13 0.29
34 19 0.42
ACGTcount: A:0.35, C:0.06, G:0.07, T:0.51
Consensus pattern (31 bp):
AATATATTATATATCTTTTCATATATTTAAG
Found at i:8967519 original size:25 final size:26
Alignment explanation
Indices: 8967491--8967614 Score: 112
Period size: 25 Copynumber: 4.9 Consensus size: 26
8967481 CACACCACAA
8967491 CTCTCATGAGCTTCCCGATTA-ATAG
1 CTCTCATGAGCTTCCCGATTATATAG
* * * *
8967516 CTCTCTTTAGCTTCTCGA-TATTTAG
1 CTCTCATGAGCTTCCCGATTATATAG
* *
8967541 CTCGCATGAGCTTCCC-ATTATACAG
1 CTCTCATGAGCTTCCCGATTATATAG
* *
8967566 CTCACATGAGCTTCCCG-TTATATGG
1 CTCTCATGAGCTTCCCGATTATATAG
** * *
8967591 CTCGAAAGAGCTTCCCGTTTATAT
1 CTCTCATGAGCTTCCCGATTATAT
8967615 GTTTGTATGA
Statistics
Matches: 79, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
24 3 0.04
25 70 0.89
26 6 0.08
ACGTcount: A:0.22, C:0.27, G:0.16, T:0.35
Consensus pattern (26 bp):
CTCTCATGAGCTTCCCGATTATATAG
Found at i:8979152 original size:16 final size:16
Alignment explanation
Indices: 8979133--8979166 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8979123 GATGAAAGCA
* *
8979133 AAAGTGCAAGCTCTGC
1 AAAGTACAAGCTCAGC
8979149 AAAGTACAAGCTCAGC
1 AAAGTACAAGCTCAGC
8979165 AA
1 AA
8979167 GATGTGTGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.24, G:0.21, T:0.15
Consensus pattern (16 bp):
AAAGTACAAGCTCAGC
Found at i:8980464 original size:26 final size:27
Alignment explanation
Indices: 8980424--8980518 Score: 140
Period size: 27 Copynumber: 3.6 Consensus size: 27
8980414 AGGAGGGTAA
* *
8980424 CCCATAGGCGACACCAAAGGTGCCATT
1 CCCATGGGCGGCACCAAAGGTGCCATT
8980451 CCCAT-GGCGGCACCAAA-GTGCCATT
1 CCCATGGGCGGCACCAAAGGTGCCATT
* *
8980476 CCCATGGGCGGCACCGATGGTGCCATT
1 CCCATGGGCGGCACCAAAGGTGCCATT
8980503 CCCATGGGCGGCACCA
1 CCCATGGGCGGCACCA
8980519 CTCGTGTTAT
Statistics
Matches: 62, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
25 13 0.21
26 21 0.34
27 28 0.45
ACGTcount: A:0.22, C:0.36, G:0.27, T:0.15
Consensus pattern (27 bp):
CCCATGGGCGGCACCAAAGGTGCCATT
Found at i:8980862 original size:42 final size:40
Alignment explanation
Indices: 8980789--8980922 Score: 123
Period size: 39 Copynumber: 3.2 Consensus size: 40
8980779 TAGATGTTAC
*
8980789 TTAG-TATTATTGTTAGTAAAAGCCTAGTATTATTATTATGG
1 TTAGTTATTATT-TTAGTAAAA-CCTATTATTATTATTATGG
*
8980830 TTAGTTATTATTTTAGTAAAACCCTAATTATTATTGTTA--G
1 TTAGTTATTATTTTAGTAAAA-CCT-ATTATTATTATTATGG
* * *
8980870 TTA-CTATTATTTTGAGTATAAAACTATTATTATTTTTATTGTG
1 TTAGTTATTATTTT-AGTA-AAACCTATTATTATTATTA-TG-G
8980913 TTAGTTATTA
1 TTAGTTATTA
8980923 GGATTAGTGG
Statistics
Matches: 77, Mismatches: 7, Indels: 15
0.78 0.07 0.15
Matches are distributed among these distances:
39 21 0.27
40 10 0.13
41 19 0.25
42 18 0.23
43 4 0.05
44 5 0.06
ACGTcount: A:0.31, C:0.05, G:0.12, T:0.51
Consensus pattern (40 bp):
TTAGTTATTATTTTAGTAAAACCTATTATTATTATTATGG
Found at i:8981295 original size:14 final size:15
Alignment explanation
Indices: 8981262--8981312 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 15
8981252 GTGGGATTAG
8981262 AAATAAAACTAGAAT
1 AAATAAAACTAGAAT
* *
8981277 AAATAAAATTAG-TT
1 AAATAAAACTAGAAT
8981291 AAATAATAA-TA-AAT
1 AAATAA-AACTAGAAT
8981305 AAATAAAA
1 AAATAAAA
8981313 AGAAGAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 2 0.06
14 16 0.52
15 13 0.42
ACGTcount: A:0.69, C:0.02, G:0.04, T:0.25
Consensus pattern (15 bp):
AAATAAAACTAGAAT
Found at i:8990541 original size:4 final size:4
Alignment explanation
Indices: 8990527--8990671 Score: 64
Period size: 4 Copynumber: 37.2 Consensus size: 4
8990517 AAAAAATTAC
* * **
8990527 CTTT TTTT CTTT CTTT -TTT C-TT CTTC CCCT C-TT C-TT C-TT CTTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT
*
8990570 -TTT -TTCT CTTCT CCTTT CTTT --TT CTTT CCTT C-TT -TTT CTTT CTTT
1 CTTT CTT-T CTT-T C-TTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT
*
8990615 CCTCTC CTTT CCTTTT CTTT CCTTTT CTTT CTTT CTTT CTTT CTTT C-TT
1 -CT-TT CTTT -C-TTT CTTT -C-TTT CTTT CTTT CTTT CTTT CTTT CTTT
8990664 C-TT CTTT C
1 CTTT CTTT C
8990672 CCTCTCCTTC
Statistics
Matches: 114, Mismatches: 10, Indels: 34
0.72 0.06 0.22
Matches are distributed among these distances:
2 2 0.02
3 29 0.25
4 59 0.52
5 15 0.13
6 9 0.08
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (4 bp):
CTTT
Found at i:8990550 original size:10 final size:11
Alignment explanation
Indices: 8990529--8990670 Score: 53
Period size: 10 Copynumber: 12.3 Consensus size: 11
8990519 AAAATTACCT
8990529 TTTTTTCTTTC
1 TTTTTTCTTTC
8990540 TTTTTTC-TTC
1 TTTTTTCTTTC
*
8990550 TTCCCCTCTTC-TTC
1 TT----TTTTCTTTC
*
8990564 TTCTTTTTTTTC
1 TT-TTTTCTTTC
* *
8990576 TCTTCTCCTTTC
1 T-TTTTTCTTTC
8990588 -TTTTTCTTTCC
1 TTTTTTCTTT-C
8990599 TTCTTTTTCTTTC
1 -T-TTTTTCTTTC
*
8990612 TTTCCTCTCCTTTC
1 TTT--T-TTCTTTC
*
8990626 -CTTTTCTTTC
1 TTTTTTCTTTC
*
8990636 -CTTTTCTTTC
1 TTTTTTCTTTC
8990646 TTTCTTTCTTTC
1 TTT-TTTCTTTC
*
8990658 TTTCTTC-TTC
1 TTTTTTCTTTC
8990668 TTT
1 TTT
8990671 CCCTCTCCTT
Statistics
Matches: 103, Mismatches: 13, Indels: 31
0.70 0.09 0.21
Matches are distributed among these distances:
10 34 0.33
11 19 0.18
12 22 0.21
13 4 0.04
14 24 0.23
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (11 bp):
TTTTTTCTTTC
Found at i:8990550 original size:14 final size:14
Alignment explanation
Indices: 8990528--8990671 Score: 66
Period size: 14 Copynumber: 9.9 Consensus size: 14
8990518 AAAAATTACC
8990528 TTTTT-TTCTTTCT
1 TTTTTCTTCTTTCT
*
8990541 TTTTTCTTCTTCCCCT
1 TTTTTCTTCTT--TCT
*
8990557 CTTCTTCTTCTTT-T
1 -TTTTTCTTCTTTCT
*
8990571 TTTTCTCTTC-TCCT
1 TTTT-TCTTCTTTCT
8990585 TTCTTT-TTCTTTCCT
1 TT-TTTCTTCTTT-CT
*
8990600 TCTTT-TTCTTTCT
1 TTTTTCTTCTTTCT
** *
8990613 TTCCTCTCCTTTCCT
1 TTTTTCTTCTTT-CT
*
8990628 TTTCTT-TCCTTTTCT
1 TTT-TTCTTC-TTTCT
8990643 TTCTTTCTTTCTTTCT
1 TT-TTTC-TTCTTTCT
*
8990659 TTCTTCTTCTTTC
1 TTTTTCTTCTTTC
8990672 CCTCTCCTTC
Statistics
Matches: 100, Mismatches: 15, Indels: 31
0.68 0.10 0.21
Matches are distributed among these distances:
13 16 0.16
14 37 0.37
15 21 0.21
16 14 0.14
17 12 0.12
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTTCTTCTTTCT
Found at i:8990569 original size:27 final size:27
Alignment explanation
Indices: 8990537--8990596 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
8990527 CTTTTTTTCT
8990537 TTCTTTTTTCT-TCTTCCCCTCTTCTTC
1 TTCTTTTTTCTCTCTTCCCCT-TTCTTC
* * *
8990564 TTCTTTTTTTTCTCTTCTCCTTTCTTT
1 TTCTTTTTTCTCTCTTCCCCTTTCTTC
8990591 TTCTTT
1 TTCTTT
8990597 CCTTCTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 21 0.72
28 8 0.28
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (27 bp):
TTCTTTTTTCTCTCTTCCCCTTTCTTC
Found at i:8990578 original size:20 final size:20
Alignment explanation
Indices: 8990555--8990670 Score: 80
Period size: 20 Copynumber: 5.8 Consensus size: 20
8990545 TCTTCTTCCC
8990555 CTCTTCTTCTTCTTTTTTTT
1 CTCTTCTTCTTCTTTTTTTT
*
8990575 CTCTTCTCCTTTCTTTTTCTTT
1 CTCTTCTTC-TTCTTTTT-TTT
* * *
8990597 C-CTTCTTTTTCTTTCTTTC
1 CTCTTCTTCTTCTTTTTTTT
* * *
8990616 CTCTCCTT-TCCTTTTCTTT
1 CTCTTCTTCTTCTTTTTTTT
8990635 C-CTT-TTCTTTCTTTCTTTCTT
1 CTCTTCTTC-TTCTTT-TTT-TT
8990656 -TCTTTCTTCTTCTTT
1 CTC-TTCTTCTTCTTT
8990671 CCCTCTCCTT
Statistics
Matches: 73, Mismatches: 13, Indels: 18
0.70 0.12 0.17
Matches are distributed among these distances:
17 2 0.03
18 2 0.03
19 16 0.22
20 22 0.30
21 16 0.22
22 12 0.16
23 3 0.04
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (20 bp):
CTCTTCTTCTTCTTTTTTTT
Found at i:8990579 original size:17 final size:17
Alignment explanation
Indices: 8990559--8990612 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 17
8990549 CTTCCCCTCT
8990559 TCTTCTTCTTTTTTTTC
1 TCTTCTTCTTTTTTTTC
*
8990576 TCTTCTCCTTTCTTTTTC
1 TCTTCTTCTTT-TTTTTC
8990594 T-TTCCTTCTTTTTCTTTC
1 TCTT-CTTCTTTTT-TTTC
8990612 T
1 T
8990613 TTCCTCTCCT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
17 14 0.44
18 18 0.56
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (17 bp):
TCTTCTTCTTTTTTTTC
Found at i:8990602 original size:38 final size:39
Alignment explanation
Indices: 8990560--8990672 Score: 148
Period size: 38 Copynumber: 3.0 Consensus size: 39
8990550 TTCCCCTCTT
8990560 CTTCTTCTTT-TTT-TTCTCTTCTCCTTTCTTTTTCTTTC
1 CTTCTTCTTTCTTTCTT-TCTTCTCCTTTCTTTTTCTTTC
* *
8990598 CTTCTT-TTTCTTTCTTTCCTCTCCTTTCCTTTTCTTTC
1 CTTCTTCTTTCTTTCTTTCTTCTCCTTTCTTTTTCTTTC
*
8990636 CTT-TTCTTTCTTTCTTTCTT-T-CTTTCTTCTTCTTTC
1 CTTCTTCTTTCTTTCTTTCTTCTCCTTTCTTTTTCTTTC
8990672 C
1 C
8990673 CTCTCCTTCT
Statistics
Matches: 67, Mismatches: 5, Indels: 8
0.84 0.06 0.10
Matches are distributed among these distances:
36 14 0.21
37 6 0.09
38 45 0.67
39 2 0.03
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (39 bp):
CTTCTTCTTTCTTTCTTTCTTCTCCTTTCTTTTTCTTTC
Found at i:8990682 original size:20 final size:20
Alignment explanation
Indices: 8990544--8990682 Score: 53
Period size: 18 Copynumber: 7.0 Consensus size: 20
8990534 TCTTTCTTTT
* *
8990544 TTCTTCTTCCCCTCTTCTTC
1 TTCTTCTTTCCCTCTCCTTC
* *
8990564 TTCTTTTTTTTCTCTTCTCCTTTC
1 TTC--TTCTTTC-CCTCTCC-TTC
* *
8990588 TTTTTCTTT-CCT-T-CTTT
1 TTCTTCTTTCCCTCTCCTTC
8990605 TTCTTTCTTT-CCTCTCCTTTCC
1 TTC-TTCTTTCCCTCTCC-TT-C
* * *
8990627 TT-TTCTTTCCTTTTCTTTC
1 TTCTTCTTTCCCTCTCCTTC
* *
8990646 -T-TTCTTT--CTTTCTTTC
1 TTCTTCTTTCCCTCTCCTTC
8990662 TTCTTCTTTCCCTCTCCTTC
1 TTCTTCTTTCCCTCTCCTTC
8990682 T
1 T
8990683 CTCCCCCCCA
Statistics
Matches: 89, Mismatches: 16, Indels: 28
0.67 0.12 0.21
Matches are distributed among these distances:
16 8 0.09
17 5 0.06
18 23 0.26
19 3 0.03
20 22 0.25
21 6 0.07
22 12 0.13
23 5 0.06
24 5 0.06
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (20 bp):
TTCTTCTTTCCCTCTCCTTC
Found at i:8997933 original size:9 final size:9
Alignment explanation
Indices: 8997919--8997944 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
8997909 AAATCAAAGT
8997919 TAATAATAC
1 TAATAATAC
8997928 TAATAATAC
1 TAATAATAC
8997937 TAATAATA
1 TAATAATA
8997945 AACTATATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.35
Consensus pattern (9 bp):
TAATAATAC
Found at i:9000018 original size:23 final size:22
Alignment explanation
Indices: 8999968--9000018 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
8999958 ATTTTGTTCA
8999968 ATTTTAATTTTTATTCAAAAAC
1 ATTTTAATTTTTATTCAAAAAC
* *
8999990 ACTTTAATTTATTATATC-TAAAC
1 ATTTTAATTT-TTAT-TCAAAAAC
9000013 ATTTTA
1 ATTTTA
9000019 TCAAACAAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 9 0.38
23 13 0.54
24 2 0.08
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (22 bp):
ATTTTAATTTTTATTCAAAAAC
Found at i:9000128 original size:21 final size:21
Alignment explanation
Indices: 9000102--9000147 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
9000092 ATTGCTCCCC
9000102 TTAATAAAAGTCATTTTGAAT
1 TTAATAAAAGTCATTTTGAAT
9000123 TTAATAAAAGTCATTTTGAAT
1 TTAATAAAAGTCATTTTGAAT
9000144 TTAA
1 TTAA
9000148 GGCCAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.43
Consensus pattern (21 bp):
TTAATAAAAGTCATTTTGAAT
Found at i:9005929 original size:22 final size:22
Alignment explanation
Indices: 9005904--9005947 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
9005894 AGATGCTTTT
9005904 GATGATTATCATGAACTTTAAA
1 GATGATTATCATGAACTTTAAA
9005926 GATGATTATCATGAACTTTAAA
1 GATGATTATCATGAACTTTAAA
9005948 AAGCAAATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (22 bp):
GATGATTATCATGAACTTTAAA
Found at i:9006728 original size:6 final size:6
Alignment explanation
Indices: 9006717--9006780 Score: 128
Period size: 6 Copynumber: 10.7 Consensus size: 6
9006707 ATTGATGATT
9006717 TTGAGC TTGAGC TTGAGC TTGAGC TTGAGC TTGAGC TTGAGC TTGAGC
1 TTGAGC TTGAGC TTGAGC TTGAGC TTGAGC TTGAGC TTGAGC TTGAGC
9006765 TTGAGC TTGAGC TTGA
1 TTGAGC TTGAGC TTGA
9006781 ATTGAAGAAA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 58 1.00
ACGTcount: A:0.17, C:0.16, G:0.33, T:0.34
Consensus pattern (6 bp):
TTGAGC
Found at i:9010180 original size:27 final size:27
Alignment explanation
Indices: 9010097--9010173 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 27
9010087 CAAGTTGCGG
* *
9010097 CTATTTGATAGGCACGACTAGTTGAGC
1 CTATCTGATAGGCGCGACTAGTTGAGC
* *
9010124 TTATCTCATAGGCGCGACTAGTTGAGC
1 CTATCTGATAGGCGCGACTAGTTGAGC
*
9010151 CTATCTGACAGGCGCGACTAGTT
1 CTATCTGATAGGCGCGACTAGTT
9010174 ATGCCTAACT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (27 bp):
CTATCTGATAGGCGCGACTAGTTGAGC
Found at i:9010192 original size:27 final size:27
Alignment explanation
Indices: 9010111--9010194 Score: 80
Period size: 27 Copynumber: 3.1 Consensus size: 27
9010101 TTGATAGGCA
* * * *
9010111 CGACTAGTTGAGCTTATCTCATAGGCG
1 CGACTAGTTGAGCCTAACTCACAAGCG
* * *
9010138 CGACTAGTTGAGCCTATCTGACAGGCG
1 CGACTAGTTGAGCCTAACTCACAAGCG
*
9010165 CGACTAGTT-ATGCCTAACTCAGAAGCG
1 CGACTAGTTGA-GCCTAACTCACAAGCG
9010192 CGA
1 CGA
9010195 ATGGTGGGGC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
26 1 0.02
27 48 0.98
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (27 bp):
CGACTAGTTGAGCCTAACTCACAAGCG
Found at i:9011237 original size:33 final size:33
Alignment explanation
Indices: 9011211--9011287 Score: 120
Period size: 33 Copynumber: 2.3 Consensus size: 33
9011201 AGTATGGCGA
9011211 TGGATAC-AGGCCGGAAGAAGCAGAGTACTGAGG
1 TGGATACGA-GCCGGAAGAAGCAGAGTACTGAGG
* *
9011244 TGGATACGAGCCGGAAGGAGCGGAGTACTGAGG
1 TGGATACGAGCCGGAAGAAGCAGAGTACTGAGG
9011277 TGGATACGAGC
1 TGGATACGAGC
9011288 TAGGATGACT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
33 40 0.98
34 1 0.02
ACGTcount: A:0.30, C:0.16, G:0.42, T:0.13
Consensus pattern (33 bp):
TGGATACGAGCCGGAAGAAGCAGAGTACTGAGG
Found at i:9011302 original size:33 final size:33
Alignment explanation
Indices: 9011223--9011312 Score: 112
Period size: 33 Copynumber: 2.7 Consensus size: 33
9011213 GATACAGGCC
* * *
9011223 GGAAGAAGCAGAGTACTGAGGTGGATACGAGCC
1 GGAAGGAGCGGAGTACTGAGGTGGATACGAGCA
9011256 GGAAGGAGCGGAGTACTGAGGTGGATACGAGCTA
1 GGAAGGAGCGGAGTACTGAGGTGGATACGAGC-A
*
9011290 GG-ATGA-CTGGAGTACTGAGGTGG
1 GGAAGGAGC-GGAGTACTGAGGTGG
9011313 TAGTGGGCTG
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
32 1 0.02
33 48 0.94
34 2 0.04
ACGTcount: A:0.29, C:0.12, G:0.43, T:0.16
Consensus pattern (33 bp):
GGAAGGAGCGGAGTACTGAGGTGGATACGAGCA
Found at i:9013456 original size:42 final size:42
Alignment explanation
Indices: 9013409--9013493 Score: 161
Period size: 42 Copynumber: 2.0 Consensus size: 42
9013399 GGAGGGGGAA
9013409 TGCATGCAGCAACAGCAGACCATTCGCGCCTACTTGTCAGGC
1 TGCATGCAGCAACAGCAGACCATTCGCGCCTACTTGTCAGGC
*
9013451 TGCATGTAGCAACAGCAGACCATTCGCGCCTACTTGTCAGGC
1 TGCATGCAGCAACAGCAGACCATTCGCGCCTACTTGTCAGGC
9013493 T
1 T
9013494 CGATTAGTCG
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.24, C:0.32, G:0.24, T:0.21
Consensus pattern (42 bp):
TGCATGCAGCAACAGCAGACCATTCGCGCCTACTTGTCAGGC
Found at i:9013526 original size:27 final size:27
Alignment explanation
Indices: 9013488--9013543 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
9013478 GCCTACTTGT
* *
9013488 CAGGCTCGATTAGTCGTGTCTATCTGA
1 CAGGCTCGATTAATCGCGTCTATCTGA
9013515 CAGGCTCGATTAATCGCGTCTATCTGA
1 CAGGCTCGATTAATCGCGTCTATCTGA
9013542 CA
1 CA
9013544 AGCGCGACCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.30
Consensus pattern (27 bp):
CAGGCTCGATTAATCGCGTCTATCTGA
Found at i:9014355 original size:7 final size:7
Alignment explanation
Indices: 9014345--9014376 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
9014335 CTAAACATAA
9014345 ATAATTT
1 ATAATTT
9014352 ATAATTT
1 ATAATTT
9014359 ATAATTT
1 ATAATTT
*
9014366 ATAATTA
1 ATAATTT
9014373 ATAA
1 ATAA
9014377 CAAAAAAATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (7 bp):
ATAATTT
Found at i:9014478 original size:19 final size:22
Alignment explanation
Indices: 9014449--9014492 Score: 67
Period size: 20 Copynumber: 2.1 Consensus size: 22
9014439 AATACATTAC
9014449 CTTTTTCTTCTTT-CTTTCT-T
1 CTTTTTCTTCTTTCCTTTCTCT
9014469 CTTTTT-TTCTTTCCTTTCTCT
1 CTTTTTCTTCTTTCCTTTCTCT
9014490 CTT
1 CTT
9014493 CAAGTGGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 6 0.27
20 12 0.55
21 4 0.18
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (22 bp):
CTTTTTCTTCTTTCCTTTCTCT
Found at i:9014664 original size:42 final size:42
Alignment explanation
Indices: 9014617--9014827 Score: 404
Period size: 42 Copynumber: 5.0 Consensus size: 42
9014607 GGAGGGGGAA
*
9014617 TGCATGCAGCAACAGCAGACCATTCGCGCCTACTTGTCAGGC
1 TGCATGTAGCAACAGCAGACCATTCGCGCCTACTTGTCAGGC
9014659 TGCATGTAGCAACAGCAGACCATTCGCGCCTACTTGTCAGGC
1 TGCATGTAGCAACAGCAGACCATTCGCGCCTACTTGTCAGGC
*
9014701 TCCATGTAGCAACAGCAGACCATTCGCGCCTACTTGTCAGGC
1 TGCATGTAGCAACAGCAGACCATTCGCGCCTACTTGTCAGGC
9014743 TGCATGTAGCAACAGCAGACCATTCGCGCCTACTTGTCAGGC
1 TGCATGTAGCAACAGCAGACCATTCGCGCCTACTTGTCAGGC
9014785 TGCATGTAGCAACAGCAGACCATTCGCGCCTACTTGTCAGGC
1 TGCATGTAGCAACAGCAGACCATTCGCGCCTACTTGTCAGGC
9014827 T
1 T
9014828 CGATTAGTCG
Statistics
Matches: 166, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 166 1.00
ACGTcount: A:0.24, C:0.32, G:0.23, T:0.21
Consensus pattern (42 bp):
TGCATGTAGCAACAGCAGACCATTCGCGCCTACTTGTCAGGC
Found at i:9014860 original size:27 final size:27
Alignment explanation
Indices: 9014822--9014877 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
9014812 GCCTACTTGT
* *
9014822 CAGGCTCGATTAGTCGTGTCTATCTGA
1 CAGGCTCGATTAATCGCGTCTATCTGA
9014849 CAGGCTCGATTAATCGCGTCTATCTGA
1 CAGGCTCGATTAATCGCGTCTATCTGA
9014876 CA
1 CA
9014878 AGCGCGACCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.30
Consensus pattern (27 bp):
CAGGCTCGATTAATCGCGTCTATCTGA
Found at i:9016098 original size:43 final size:41
Alignment explanation
Indices: 9016050--9016140 Score: 157
Period size: 40 Copynumber: 2.2 Consensus size: 41
9016040 CATCCATTTA
9016050 TAAGAAATTAGAATAATACCATACAAAAACAAGCAAGAAGCCT
1 TAAGAAATT--AATAATACCATACAAAAACAAGCAAGAAGCCT
9016093 TAAGAAA-TAATAATACCATACAAAAACAAGCAAGAAGCCT
1 TAAGAAATTAATAATACCATACAAAAACAAGCAAGAAGCCT
9016133 TAAGAAAT
1 TAAGAAAT
9016141 GGTTTTCTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
40 39 0.83
42 1 0.02
43 7 0.15
ACGTcount: A:0.57, C:0.15, G:0.11, T:0.16
Consensus pattern (41 bp):
TAAGAAATTAATAATACCATACAAAAACAAGCAAGAAGCCT
Found at i:9016113 original size:40 final size:40
Alignment explanation
Indices: 9016061--9016140 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
9016051 AAGAAATTAG
9016061 AATAATACCATACAAAAACAAGCAAGAAGCCTTAAGAAAT
1 AATAATACCATACAAAAACAAGCAAGAAGCCTTAAGAAAT
9016101 AATAATACCATACAAAAACAAGCAAGAAGCCTTAAGAAAT
1 AATAATACCATACAAAAACAAGCAAGAAGCCTTAAGAAAT
9016141 GGTTTTCTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.57, C:0.17, G:0.10, T:0.15
Consensus pattern (40 bp):
AATAATACCATACAAAAACAAGCAAGAAGCCTTAAGAAAT
Found at i:9018487 original size:18 final size:18
Alignment explanation
Indices: 9018464--9018499 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
9018454 CAATACCCCT
9018464 TCATCCTCGCCGCTCTCA
1 TCATCCTCGCCGCTCTCA
9018482 TCATCCTCGCCGCTCTCA
1 TCATCCTCGCCGCTCTCA
9018500 AAACCGACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.50, G:0.11, T:0.28
Consensus pattern (18 bp):
TCATCCTCGCCGCTCTCA
Found at i:9027767 original size:34 final size:34
Alignment explanation
Indices: 9027725--9027814 Score: 137
Period size: 34 Copynumber: 2.6 Consensus size: 34
9027715 TATTAAAAAA
9027725 CTAAACCCTAATTTAATTAATTAATTTAAAA-TCC
1 CTAAACCCTAATTTAATTAATTAATTTAAAACT-C
*
9027759 CTAAACCCTAATTTAATTAATTTATTTAAAACTC
1 CTAAACCCTAATTTAATTAATTAATTTAAAACTC
* *
9027793 CAAAAACCTAATTTAATTAATT
1 CTAAACCCTAATTTAATTAATT
9027815 TTAAAAAAAG
Statistics
Matches: 52, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
34 51 0.98
35 1 0.02
ACGTcount: A:0.44, C:0.17, G:0.00, T:0.39
Consensus pattern (34 bp):
CTAAACCCTAATTTAATTAATTAATTTAAAACTC
Found at i:9028241 original size:16 final size:16
Alignment explanation
Indices: 9028212--9028270 Score: 82
Period size: 16 Copynumber: 3.6 Consensus size: 16
9028202 TTTGGTTCGC
* *
9028212 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
*
9028228 CGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
9028244 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
9028260 TGTAATAGGAA
1 TGTAAT-GGAA
9028271 ATCAACTGTT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
16 34 0.89
17 4 0.11
ACGTcount: A:0.36, C:0.02, G:0.36, T:0.27
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:9028310 original size:45 final size:44
Alignment explanation
Indices: 9028244--9028334 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 44
9028234 GGAATAGAGG
*
9028244 TGTAATGGAATAGAGGTGTAATAGGAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATA-GAAATCAACTGTTTGGTTGAA
* ***
9028289 TGTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
9028333 TG
1 TG
9028335 GAATAGAGGT
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 19 0.46
45 22 0.54
ACGTcount: A:0.32, C:0.04, G:0.30, T:0.34
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGAAATCAACTGTTTGGTTGAA
Found at i:9028349 original size:39 final size:42
Alignment explanation
Indices: 9028244--9028351 Score: 123
Period size: 45 Copynumber: 2.6 Consensus size: 42
9028234 GGAATAGAGG
9028244 TGTAATGGAATAGAGGTGTAATAGGAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGTGTAATA-GAAATCAACTGTTTGGTT--A
* * ***
9028289 TGTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGTGTAATAGAAATCAACTGTTTGGTTA
9028329 TG-AATGGAATAGAGGTGTAATAG
1 TGTAATGGAATAGAGGTGTAATAG
9028352 CATAATGGAA
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 1 0.02
44 12 0.21
45 22 0.39
ACGTcount: A:0.33, C:0.04, G:0.31, T:0.32
Consensus pattern (42 bp):
TGTAATGGAATAGAGGTGTAATAGAAATCAACTGTTTGGTTA
Found at i:9037867 original size:117 final size:118
Alignment explanation
Indices: 9037660--9037894 Score: 463
Period size: 117 Copynumber: 2.0 Consensus size: 118
9037650 GGGCCAAATT
9037660 TGCCCGGCCTACGTGAAGCTAAACAGTCCAAATACAACAGTTTTTTTTGGACCCAAAACAAAATA
1 TGCCCGGCCTACGTGAAGCTAAACAGTCCAAATACAACAGTTTTTTTTGGACCCAAAACAAAATA
9037725 CAATAACGAATGACCCAAAATTAACCCCCAGGCCCAAGAACAATTTCAAAAAC
66 CAATAACGAATGACCCAAAATTAACCCCCAGGCCCAAGAACAATTTCAAAAAC
9037778 TGCCCGGCCT-CGTGAAGCTAAACAGTCCAAATACAACAGTTTTTTTTGGACCCAAAACAAAATA
1 TGCCCGGCCTACGTGAAGCTAAACAGTCCAAATACAACAGTTTTTTTTGGACCCAAAACAAAATA
9037842 CAATAACGAATGACCCAAAATTAACCCCCAGGCCCAAGAACAATTTCAAAAAC
66 CAATAACGAATGACCCAAAATTAACCCCCAGGCCCAAGAACAATTTCAAAAAC
9037895 CCTAGAGTTC
Statistics
Matches: 117, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
117 107 0.91
118 10 0.09
ACGTcount: A:0.41, C:0.27, G:0.13, T:0.19
Consensus pattern (118 bp):
TGCCCGGCCTACGTGAAGCTAAACAGTCCAAATACAACAGTTTTTTTTGGACCCAAAACAAAATA
CAATAACGAATGACCCAAAATTAACCCCCAGGCCCAAGAACAATTTCAAAAAC
Done.