Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 3 of 145
Found at i:888203 original size:23 final size:21
Alignment explanation
Indices: 888157--888205 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
888147 CTCTCTGAAT
*
888157 AAAAATTAAATAAATCCCCAA
1 AAAAATTAAATAAATACCCAA
*
888178 AAAAATTAAAAATAAA-ACCCAG
1 AAAAATT--AAATAAATACCCAA
888200 AAAAAT
1 AAAAAT
888206 AGTAGCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 7 0.29
22 10 0.42
23 7 0.29
ACGTcount: A:0.67, C:0.14, G:0.02, T:0.16
Consensus pattern (21 bp):
AAAAATTAAATAAATACCCAA
Found at i:889216 original size:215 final size:215
Alignment explanation
Indices: 888835--889337 Score: 720
Period size: 215 Copynumber: 2.3 Consensus size: 215
888825 CGAACATAGG
* * * * *
888835 TACTACAAGTAAAATGAAGAGTCTGAGCATCATAGCTTAGCATGAACTAAAACTAGGTAATGGCA
1 TACTTCAAGAAAAATGAAGAGTCCGAGCATCATAGCTTAGCACGAACTAAAACTAGGTAATGGTA
* * * *
888900 GTGATAAAATCTTGATCTCTTAGTTGGAATTTTACTTAGCACCTATGTTGCTCCGATTTGGGTGT
66 GTGATAAAATCATGATCTCTTAGTTGGAAATTTACTTAGCACCTATATTACTCCGATTTGGGTGT
* * * * * *
888965 AGTTGTCCAATACTGGTAGTGTCTGATATGAGTTTAGAGGTTGTATCTCTGTATTTG-TGTGTCG
131 AGTTGTCCAATAATAGTAGTGTCGGACACGAGTTTAGAGGTTGTATCTCTGTA-TTGCAGTGTCG
889029 GACATGAGGGTCAGACACAGA
195 GACATGAGGGTCAGACACAGA
*
889050 TACTTCAAGAAAAATGAAGAGTCCGAGCATCATAGCTTAGCACGAACCAAAACTAGGTAATGGTA
1 TACTTCAAGAAAAATGAAGAGTCCGAGCATCATAGCTTAGCACGAACTAAAACTAGGTAATGGTA
* * * * *
889115 GTGATAAAATCATGTTTTCTTATTTGGAAATTTACTTAGCACCTGTATTACTCGGATTTGGGTGT
66 GTGATAAAATCATGATCTCTTAGTTGGAAATTTACTTAGCACCTATATTACTCCGATTTGGGTGT
** *
889180 AGTTGTCTGATAATAGTAGTGTCGGACACGAGTTTAGAGGTTGTATCTCTGTATTGCAGTGTTGG
131 AGTTGTCCAATAATAGTAGTGTCGGACACGAGTTTAGAGGTTGTATCTCTGTATTGCAGTGTCGG
* *
889245 ACATGAGTGTCAGGCACAGA
196 ACATGAGGGTCAGACACAGA
* * * *
889265 TACTTCAAGAAAAATGAAGAGTTCGAGCATCATAGCTTAGGACAAACTAAAACTATGTAATGGTA
1 TACTTCAAGAAAAATGAAGAGTCCGAGCATCATAGCTTAGCACGAACTAAAACTAGGTAATGGTA
889330 GTGATAAA
66 GTGATAAA
889338 GTCTTGGAAC
Statistics
Matches: 256, Mismatches: 31, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
214 3 0.01
215 253 0.99
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.31
Consensus pattern (215 bp):
TACTTCAAGAAAAATGAAGAGTCCGAGCATCATAGCTTAGCACGAACTAAAACTAGGTAATGGTA
GTGATAAAATCATGATCTCTTAGTTGGAAATTTACTTAGCACCTATATTACTCCGATTTGGGTGT
AGTTGTCCAATAATAGTAGTGTCGGACACGAGTTTAGAGGTTGTATCTCTGTATTGCAGTGTCGG
ACATGAGGGTCAGACACAGA
Found at i:893603 original size:12 final size:12
Alignment explanation
Indices: 893586--893610 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
893576 AAACAGGGAT
893586 TCATCATCTTCA
1 TCATCATCTTCA
893598 TCATCATCTTCA
1 TCATCATCTTCA
893610 T
1 T
893611 TCGGTTCAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.44
Consensus pattern (12 bp):
TCATCATCTTCA
Found at i:895852 original size:31 final size:31
Alignment explanation
Indices: 895783--895852 Score: 95
Period size: 31 Copynumber: 2.3 Consensus size: 31
895773 ATTAACAGTC
* *
895783 CAGTGGCTTAAATAAAAATTTTCAAATAGTT
1 CAGTGACTTAAATAAAAATTTTCAAATAATT
* *
895814 CAATGACTTAAATGAAAATTTTCAAATAATT
1 CAGTGACTTAAATAAAAATTTTCAAATAATT
*
895845 TAGTGACT
1 CAGTGACT
895853 ATTTTGTAAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.43, C:0.10, G:0.11, T:0.36
Consensus pattern (31 bp):
CAGTGACTTAAATAAAAATTTTCAAATAATT
Found at i:903077 original size:29 final size:27
Alignment explanation
Indices: 903031--903084 Score: 81
Period size: 29 Copynumber: 1.9 Consensus size: 27
903021 TTTCTAAATC
903031 TAAAAAAAAAATCGAGGACTAAATTAT
1 TAAAAAAAAAATCGAGGACTAAATTAT
*
903058 TAAAAATAAAAATAGGAGGACTAAATT
1 TAAAAA-AAAAAT-CGAGGACTAAATT
903085 CCAAATAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 6 0.25
28 6 0.25
29 12 0.50
ACGTcount: A:0.59, C:0.06, G:0.13, T:0.22
Consensus pattern (27 bp):
TAAAAAAAAAATCGAGGACTAAATTAT
Found at i:904168 original size:31 final size:31
Alignment explanation
Indices: 904106--904169 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 31
904096 AAAATAGCAG
* * * *
904106 TTCGACTTTTTTTGAAAGGTTGATGATCAAA
1 TTCGACTCTTTTTAAAAGATTGATGACCAAA
904137 TTCGACTCTTTTTAAAAGATTGA-GAGCCAAA
1 TTCGACTCTTTTTAAAAGATTGATGA-CCAAA
904168 TT
1 TT
904170 TAGCTTAAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 2 0.07
31 26 0.93
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.39
Consensus pattern (31 bp):
TTCGACTCTTTTTAAAAGATTGATGACCAAA
Found at i:904810 original size:2 final size:2
Alignment explanation
Indices: 904803--904829 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
904793 TTTACAATGG
904803 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
904830 AAGGAAAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:905172 original size:17 final size:17
Alignment explanation
Indices: 905150--905182 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
905140 AAGCAAATAA
905150 TAATAAA-AGAAGTAAAC
1 TAATAAATAGAA-TAAAC
905167 TAATAAATAGAATAAA
1 TAATAAATAGAATAAA
905183 GGGTAAATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.67, C:0.03, G:0.09, T:0.21
Consensus pattern (17 bp):
TAATAAATAGAATAAAC
Found at i:909310 original size:41 final size:40
Alignment explanation
Indices: 909215--909312 Score: 144
Period size: 40 Copynumber: 2.4 Consensus size: 40
909205 ATGCATGCAT
* *
909215 GCATACATGCATACATATTAAGACAAATGTAAAAAGAATG
1 GCATGCATGCATACATATTAAGAAAAATGTAAAAAGAATG
*
909255 GCATGCATGCATACATATTAAGAAAAAAATGTAAAAA-AGTG
1 GCATGCATGCATACATATTAAG--AAAAATGTAAAAAGAATG
909296 GCATGCATGCATACATA
1 GCATGCATGCATACATA
909313 CATATATACA
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
40 21 0.40
41 20 0.38
42 12 0.23
ACGTcount: A:0.48, C:0.13, G:0.16, T:0.22
Consensus pattern (40 bp):
GCATGCATGCATACATATTAAGAAAAATGTAAAAAGAATG
Found at i:921663 original size:49 final size:48
Alignment explanation
Indices: 921584--921681 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 48
921574 GATTCAATTG
*
921584 GTTCTGTCAGTTTTTTCGATTTACTTGATCTTTGGTTTATGGTTATTA
1 GTTCTGTCAGTTTTTTCGATTTACTCGATCTTTGGTTTATGGTTATTA
921632 GTTCTGTCAGTTTTTTTCGATTTACTCGATCTTTGGTTTATGGTTATTA
1 GTTCTGTCAG-TTTTTTCGATTTACTCGATCTTTGGTTTATGGTTATTA
921681 G
1 G
921682 GTTAAGTTTA
Statistics
Matches: 48, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 10 0.21
49 38 0.79
ACGTcount: A:0.14, C:0.11, G:0.19, T:0.55
Consensus pattern (48 bp):
GTTCTGTCAGTTTTTTCGATTTACTCGATCTTTGGTTTATGGTTATTA
Found at i:922681 original size:40 final size:40
Alignment explanation
Indices: 922621--922704 Score: 159
Period size: 40 Copynumber: 2.1 Consensus size: 40
922611 TATGAATCAG
922621 ATTGCATTTTACCTTCTATACTAAAAAAAAGAAGAAATAA
1 ATTGCATTTTACCTTCTATACTAAAAAAAAGAAGAAATAA
*
922661 ATTGTATTTTACCTTCTATACTAAAAAAAAGAAGAAATAA
1 ATTGCATTTTACCTTCTATACTAAAAAAAAGAAGAAATAA
922701 ATTG
1 ATTG
922705 GTTATTCCTA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.49, C:0.11, G:0.08, T:0.32
Consensus pattern (40 bp):
ATTGCATTTTACCTTCTATACTAAAAAAAAGAAGAAATAA
Found at i:923215 original size:31 final size:30
Alignment explanation
Indices: 923175--923234 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 30
923165 GTAAAAATTA
* *
923175 AAATTATACATAAATTTTGATTCAATATAC
1 AAATTATACATAAACTTTCATTCAATATAC
* *
923205 AAATTGATACATGAACTTTCATTTAATATA
1 AAATT-ATACATAAACTTTCATTCAATATA
923235 ATTATATATG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 5 0.20
31 20 0.80
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (30 bp):
AAATTATACATAAACTTTCATTCAATATAC
Found at i:923463 original size:72 final size:73
Alignment explanation
Indices: 923373--923519 Score: 287
Period size: 72 Copynumber: 2.0 Consensus size: 73
923363 TATATGCAAT
923373 ATATAAACATAAAATGTTACTATATCAATAATTATATTAATAATTTATGAGGATTGAATCAAATC
1 ATATAAACATAAAATGTTACTATATCAATAATTATATTAATAATTTATGAGGATTGAATCAAATC
923438 AAAATTTC
66 AAAATTTC
923446 ATATAAACAT-AAATGTTACTATATCAATAATTATATTAATAATTTATGAGGATTGAATCAAATC
1 ATATAAACATAAAATGTTACTATATCAATAATTATATTAATAATTTATGAGGATTGAATCAAATC
923510 AAAATTTC
66 AAAATTTC
923518 AT
1 AT
923520 GTATAAAATT
Statistics
Matches: 74, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
72 64 0.86
73 10 0.14
ACGTcount: A:0.48, C:0.08, G:0.07, T:0.37
Consensus pattern (73 bp):
ATATAAACATAAAATGTTACTATATCAATAATTATATTAATAATTTATGAGGATTGAATCAAATC
AAAATTTC
Found at i:923836 original size:30 final size:33
Alignment explanation
Indices: 923766--923842 Score: 106
Period size: 30 Copynumber: 2.4 Consensus size: 33
923756 TTATATTATG
*
923766 GTCACTGAACTATTTGAAAGTTTTCAGTTATAA
1 GTCACTGAACTATTTGAAAATTTTCAGTTATAA
* *
923799 CTCACTGAACTATTT-AAAATTTTTA-TT-TAA
1 GTCACTGAACTATTTGAAAATTTTCAGTTATAA
923829 GTCACTGAACTATT
1 GTCACTGAACTATT
923843 AATTTTTTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
30 16 0.40
31 2 0.05
32 8 0.20
33 14 0.35
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.42
Consensus pattern (33 bp):
GTCACTGAACTATTTGAAAATTTTCAGTTATAA
Found at i:924574 original size:18 final size:19
Alignment explanation
Indices: 924551--924591 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
924541 TCACTTAATT
924551 TTTTTAAATATTTTTTA-A
1 TTTTTAAATATTTTTTAGA
**
924569 TTTTTATGTATTTTTTAGA
1 TTTTTAAATATTTTTTAGA
924588 TTTT
1 TTTT
924592 ATATAAAACT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (19 bp):
TTTTTAAATATTTTTTAGA
Found at i:927391 original size:24 final size:24
Alignment explanation
Indices: 927359--927408 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
927349 ATACAATTAC
*
927359 ATATTAGACTAAAATTAATGTATA
1 ATATTAGACCAAAATTAATGTATA
*
927383 ATATTAGACCAGAATTAATGTATA
1 ATATTAGACCAAAATTAATGTATA
927407 AT
1 AT
927409 TTATTTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.36
Consensus pattern (24 bp):
ATATTAGACCAAAATTAATGTATA
Found at i:928232 original size:22 final size:21
Alignment explanation
Indices: 928203--928244 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
928193 CTTGATGTGA
*
928203 ATTAAAAATAATTATTTATTC
1 ATTAAAAAAAATTATTTATTC
928224 ATTATAAAAAAATTATTTATT
1 ATTA-AAAAAAATTATTTATT
928245 TAGATGTGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
ATTAAAAAAAATTATTTATTC
Found at i:929062 original size:15 final size:15
Alignment explanation
Indices: 929015--929055 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
929005 TTGGTTGGTC
* *
929015 AGAAAAGGATGGAAA
1 AGAAAAGAAAGGAAA
929030 AGAAAAGAAAGGAAA
1 AGAAAAGAAAGGAAA
929045 AGAAAAGAAAG
1 AGAAAAGAAAG
929056 TGGAAGACTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.68, C:0.00, G:0.29, T:0.02
Consensus pattern (15 bp):
AGAAAAGAAAGGAAA
Found at i:946943 original size:12 final size:12
Alignment explanation
Indices: 946912--946944 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
946902 ATTGCAGATA
*
946912 AATTAAAATTTT
1 AATTATAATTTT
946924 AATT-TAATTTT
1 AATTATAATTTT
946935 AATTATAATT
1 AATTATAATT
946945 ATTTAGCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
AATTATAATTTT
Found at i:949724 original size:2 final size:2
Alignment explanation
Indices: 949717--949753 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
949707 ATTTGTATGC
949717 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
949754 AACAAAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:951598 original size:31 final size:32
Alignment explanation
Indices: 951545--951615 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
951535 CTTAACAACC
*
951545 CAATGACTTAAATAAAAAAACTTTTAAATAATT
1 CAATGACTTAAAT-AAAAAACTTTCAAATAATT
* *
951578 CAATGATTTAAAT-AAAAACTTTCAAATAGTT
1 CAATGACTTAAATAAAAAACTTTCAAATAATT
*
951609 CGATGAC
1 CAATGAC
951616 CATTTTGTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
31 21 0.64
33 12 0.36
ACGTcount: A:0.49, C:0.11, G:0.07, T:0.32
Consensus pattern (32 bp):
CAATGACTTAAATAAAAAACTTTCAAATAATT
Found at i:952943 original size:32 final size:31
Alignment explanation
Indices: 952907--952969 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
952897 CTTAACAGTC
*
952907 CAATGACTTAAAACAAAAACTTTCAAATAGTT
1 CAATGACCT-AAACAAAAACTTTCAAATAGTT
** *
952939 CAATGACCTAAATGAAAACTTTCGAATAGTT
1 CAATGACCTAAACAAAAACTTTCAAATAGTT
952970 TAGTGATCAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
31 19 0.70
32 8 0.30
ACGTcount: A:0.46, C:0.16, G:0.10, T:0.29
Consensus pattern (31 bp):
CAATGACCTAAACAAAAACTTTCAAATAGTT
Found at i:955225 original size:4 final size:4
Alignment explanation
Indices: 955218--955278 Score: 56
Period size: 4 Copynumber: 15.0 Consensus size: 4
955208 TTTCTCCTTC
*
955218 CTTT CTTT CCTT -TTT CTTTT CTTT CTTT CTTT C-TT -TTT CTTT CTGTTT
1 CTTT CTTT CTTT CTTT C-TTT CTTT CTTT CTTT CTTT CTTT CTTT C--TTT
955266 CGTTT CTTT CTTT
1 C-TTT CTTT CTTT
955279 TTATTTATTC
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
3 6 0.12
4 30 0.61
5 9 0.18
6 4 0.08
ACGTcount: A:0.00, C:0.23, G:0.03, T:0.74
Consensus pattern (4 bp):
CTTT
Found at i:955246 original size:24 final size:24
Alignment explanation
Indices: 955207--955280 Score: 96
Period size: 24 Copynumber: 3.0 Consensus size: 24
955197 AAAACCGTGG
*
955207 CTTTCTCCTTCCTTTCTTTCCTTTTT
1 CTTTCT-CTTTCTTTCTTT-CTTTTT
955233 CTTT-TCTTTCTTTCTTTCTTTTT
1 CTTTCTCTTTCTTTCTTTCTTTTT
*
955256 CTTTCTGTTTCGTTTCTTTCTTTTT
1 CTTTCTCTTTC-TTTCTTTCTTTTT
955281 ATTTATTCTT
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
23 10 0.23
24 16 0.36
25 14 0.32
26 4 0.09
ACGTcount: A:0.00, C:0.26, G:0.03, T:0.72
Consensus pattern (24 bp):
CTTTCTCTTTCTTTCTTTCTTTTT
Found at i:958164 original size:12 final size:12
Alignment explanation
Indices: 958149--958180 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
958139 AAAAAAAAAT
958149 TGAAAATTTTAA
1 TGAAAATTTTAA
958161 TGAAAATTTTAA
1 TGAAAATTTTAA
958173 --AAAATTTT
1 TGAAAATTTT
958181 GGAGGATCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
10 8 0.40
12 12 0.60
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (12 bp):
TGAAAATTTTAA
Found at i:958198 original size:31 final size:30
Alignment explanation
Indices: 958158--958269 Score: 97
Period size: 31 Copynumber: 3.7 Consensus size: 30
958148 TTGAAAATTT
*
958158 TAATGAAAATTTTAAAAAATTTTGGAGGATC
1 TAATTAAAATTTT-AAAAATTTTGGAGGATC
** * *
958189 TAATTAAAA-TTTAAACCTTTTGAAAGGCTC
1 TAATTAAAATTTTAAAAATTTTG-GAGGATC
* *
958219 -AATTAGAATTTCTAAAAATTTT-GAGGGGTC
1 TAATTAAAATTT-TAAAAATTTTGGA-GGATC
958249 TAATTAAAATTTT-AAAATTTT
1 TAATTAAAATTTTAAAAATTTT
958270 CTAAAGCTTT
Statistics
Matches: 65, Mismatches: 11, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
29 24 0.37
30 15 0.23
31 26 0.40
ACGTcount: A:0.42, C:0.06, G:0.12, T:0.39
Consensus pattern (30 bp):
TAATTAAAATTTTAAAAATTTTGGAGGATC
Found at i:960510 original size:366 final size:367
Alignment explanation
Indices: 959827--960560 Score: 1461
Period size: 366 Copynumber: 2.0 Consensus size: 367
959817 TTTTATTAAT
959827 ATATAATATTATACATTTTTAAAGAGTAAAAAAGTAATTTTTTAAATTGAGCCCTCTCCCGCCTT
1 ATATAATATTATACATTTTTAAAGAGTAAAAAAGTAATTTTTTAAATTGAGCCCTCTCCCGCCTT
959892 TCCTGTTGATGTGTGACAACTCACGTGGCAGCTTATCCATATTTCAAAATTTTCAAAAATTTTTA
66 TCCTGTTGATGTGTGACAACTCACGTGGCAGCTTATCCATATTTCAAAATTTTCAAAAATTTTTA
959957 TAAAGTTCATAAATTAAAAGAATTTTAGTGTAATAATAAAGTACACGCTTAAAATTGGACTTACC
131 TAAAGTTCATAAATTAAAAGAATTTTAGTGTAATAATAAAGTACACGCTTAAAATTGGACTTACC
960022 TAATATATATGAATAGAACATAAAATATAATTGTCGGGTTATTAAAATTAAAGCCGATTAAGTTT
196 TAATATATATGAATAGAACATAAAATATAATTGTCGGGTTATTAAAATTAAAGCCGATTAAGTTT
960087 TAGCTCAATTGATATGAGTATTGTTGTTAATGTAAGAGGACGTGGGTTCAAGTCCTCTCGTCTAT
261 TAGCTCAATTGATATGAGTATTGTTGTTAATGTAAGAGGACGTGGGTTCAAGTCCTCTCGTCTAT
960152 TTATTGAAGACAGGTATAGATAGTTAGTAGGTAGAAAGTCAA
326 TTATTGAAGACAGGTATAGATAGTTAGTAGGTAGAAAGTCAA
960194 ATATAATATT-TACATTTTTAAAGAGTAAAAAAGTAATTTTTTAAATTGAGCCCTCTCCCGCCTT
1 ATATAATATTATACATTTTTAAAGAGTAAAAAAGTAATTTTTTAAATTGAGCCCTCTCCCGCCTT
960258 TCCTGTTGATGTGTGACAACTCACGTGGCAGCTTATCCATATTTCAAAATTTTCAAAAATTTTTA
66 TCCTGTTGATGTGTGACAACTCACGTGGCAGCTTATCCATATTTCAAAATTTTCAAAAATTTTTA
960323 TAAAGTTCATAAATTAAAAGAATTTTAGTGTAATAATAAAGTACACGCTTAAAATTGGACTTACC
131 TAAAGTTCATAAATTAAAAGAATTTTAGTGTAATAATAAAGTACACGCTTAAAATTGGACTTACC
960388 TAATATATATGAATAGAACATAAAATATAATTGTCGGGTTATTAAAATTAAAGCCGATTAAGTTT
196 TAATATATATGAATAGAACATAAAATATAATTGTCGGGTTATTAAAATTAAAGCCGATTAAGTTT
960453 TAGCTCAATTGATATGAGTATTGTTGTTAATGTAAGAGGACGTGGGTTCAAGTCCTCTCGTCTAT
261 TAGCTCAATTGATATGAGTATTGTTGTTAATGTAAGAGGACGTGGGTTCAAGTCCTCTCGTCTAT
960518 TTATTGAAGACAGGTATAGATAGTTAGTAGGTAGAAAGTCAA
326 TTATTGAAGACAGGTATAGATAGTTAGTAGGTAGAAAGTCAA
960560 A
1 A
960561 ATTGAAATGC
Statistics
Matches: 367, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
366 357 0.97
367 10 0.03
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (367 bp):
ATATAATATTATACATTTTTAAAGAGTAAAAAAGTAATTTTTTAAATTGAGCCCTCTCCCGCCTT
TCCTGTTGATGTGTGACAACTCACGTGGCAGCTTATCCATATTTCAAAATTTTCAAAAATTTTTA
TAAAGTTCATAAATTAAAAGAATTTTAGTGTAATAATAAAGTACACGCTTAAAATTGGACTTACC
TAATATATATGAATAGAACATAAAATATAATTGTCGGGTTATTAAAATTAAAGCCGATTAAGTTT
TAGCTCAATTGATATGAGTATTGTTGTTAATGTAAGAGGACGTGGGTTCAAGTCCTCTCGTCTAT
TTATTGAAGACAGGTATAGATAGTTAGTAGGTAGAAAGTCAA
Found at i:966797 original size:16 final size:16
Alignment explanation
Indices: 966772--966802 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
966762 TTTTATCATT
966772 TATTAATATAAAAAGC
1 TATTAATATAAAAAGC
*
966788 TATTATTATAAAAAG
1 TATTAATATAAAAAG
966803 TAAAATTTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.35
Consensus pattern (16 bp):
TATTAATATAAAAAGC
Found at i:975484 original size:2 final size:2
Alignment explanation
Indices: 975477--975504 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
975467 CTTTTATCTC
975477 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
975505 GAGATAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:979352 original size:123 final size:122
Alignment explanation
Indices: 979058--979419 Score: 399
Period size: 124 Copynumber: 2.9 Consensus size: 122
979048 CATATATATG
* * * ** *
979058 TAGTATTTACAGCATTTAGGTGCAAGCAATCTCATATTCTATCAATTGAAAGGCAAATCATACAT
1 TAGTATTTACAGCATTTAGATGCAAGAAAACTCATATTCTATCAATTCTAAGGCAAATCATAAAT
* * * *
979123 AAGCAACTATGGGACAACTAATTATTCATTGACATAACTGCAGTGTATACATATACGTC
66 AAGCAACTATGGGTCAACTTATCATTCATTGACATAACTGCA--ATATACATATACGTC
* * *
979182 TAGTATTTACAGCATGTAGATGCAAGAAACCTCATATTTTATCAATTCTAAGGCAAATCATAAAT
1 TAGTATTTACAGCATTTAGATGCAAGAAAACTCATATTCTATCAATTCTAAGGCAAATCATAAAT
* * * * *
979247 CAGCAACTA-GGGTCAACTTGTCATTCATTGGCATAACAGCAACATACATACATACAGAT-
66 AAGCAACTATGGGTCAACTTATCATTCATTGACATAACTGCAATATACAT--ATAC-G-TC
* * * * * *
979306 T-GTATTTGCAGCATTTAGATGCAATAAAACTCAAATTCTATTAATTCTGAGGCAAATAATAAAT
1 TAGTATTTACAGCATTTAGATGCAAGAAAACTCATATTCTATCAATTCTAAGGCAAATCATAAAT
* *
979370 AAGCATCTATGGGTCAA-TTAATCATTCAGTGACATAACTGCAATATACAT
66 AAGCAACTATGGGTCAACTT-ATCATTCATTGACATAACTGCAATATACAT
979420 GTACAATCAT
Statistics
Matches: 199, Mismatches: 33, Indels: 12
0.82 0.14 0.05
Matches are distributed among these distances:
121 6 0.03
123 93 0.47
124 99 0.50
125 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.14, T:0.30
Consensus pattern (122 bp):
TAGTATTTACAGCATTTAGATGCAAGAAAACTCATATTCTATCAATTCTAAGGCAAATCATAAAT
AAGCAACTATGGGTCAACTTATCATTCATTGACATAACTGCAATATACATATACGTC
Found at i:979596 original size:8 final size:8
Alignment explanation
Indices: 979585--979613 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
979575 TATACATGCA
979585 TACATATC
1 TACATATC
979593 TACATATC
1 TACATATC
979601 TACATATC
1 TACATATC
979609 TACAT
1 TACAT
979614 CCATACATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.24, G:0.00, T:0.38
Consensus pattern (8 bp):
TACATATC
Found at i:979596 original size:16 final size:16
Alignment explanation
Indices: 979577--979623 Score: 60
Period size: 16 Copynumber: 2.9 Consensus size: 16
979567 CATATACATA
*
979577 TACATGCATACATATC
1 TACATCCATACATATC
*
979593 TACATATC-TACATATC
1 TACAT-CCATACATATC
979609 TACATCCATACATAT
1 TACATCCATACATAT
979624 AGTATTTACA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 1 0.04
16 25 0.93
17 1 0.04
ACGTcount: A:0.38, C:0.26, G:0.02, T:0.34
Consensus pattern (16 bp):
TACATCCATACATATC
Found at i:979732 original size:168 final size:165
Alignment explanation
Indices: 979454--979764 Score: 460
Period size: 168 Copynumber: 1.9 Consensus size: 165
979444 ATACATATAA
* * *
979454 ATAGTATTTACAGCATTTAGATACAAGAAAACTCGTATTCTATCAATTCTAAGGCAAATTATAGA
1 ATAGTATTTACAGCATTTAGATACAAGAAAACTCATATTCTATCAATTCTAAGGCAAATCATAAA
* * *
979519 AAACCAACTATGGGTCAACTAACCATTCATTGACATAGCTGCAATATACATATACATATACATGC
66 AAACCAACTATGGGTCAACTAACCATTCATTAACATAACTGCAATATACATATAC-TACACATGC
979584 ATACATATCTACATATCTACATATCTACATCCATACAT
130 ATACATA-C-ACATATCTACATATCTACATCCATACAT
* * * * * *
979622 ATAGTATTTACAGCATTTATATGCGAGAGAACTCATATTCTGTCAGTTCTAAGGCAAATCATAAA
1 ATAGTATTTACAGCATTTAGATACAAGAAAACTCATATTCTATCAATTCTAAGGCAAATCATAAA
** *
979687 AAACCAACTATGGGTCAACTAGTCATTCATTAACATAATTGCAATATACATATACTACACATGCA
66 AAACCAACTATGGGTCAACTAACCATTCATTAACATAACTGCAATATACATATACTACACATGCA
979752 TACATACACATAT
131 TACATACACATAT
979765 ATAGTATTTA
Statistics
Matches: 128, Mismatches: 15, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
165 6 0.05
166 1 0.01
167 15 0.12
168 106 0.83
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (165 bp):
ATAGTATTTACAGCATTTAGATACAAGAAAACTCATATTCTATCAATTCTAAGGCAAATCATAAA
AAACCAACTATGGGTCAACTAACCATTCATTAACATAACTGCAATATACATATACTACACATGCA
TACATACACATATCTACATATCTACATCCATACAT
Found at i:979869 original size:4 final size:4
Alignment explanation
Indices: 979862--979906 Score: 90
Period size: 4 Copynumber: 11.2 Consensus size: 4
979852 TAATTGATTG
979862 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
979907 TACAGTATTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 41 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:979906 original size:143 final size:141
Alignment explanation
Indices: 979745--980017 Score: 340
Period size: 143 Copynumber: 1.9 Consensus size: 141
979735 CATATACTAC
*
979745 ACATGCATACATAC--ACATATATAGTATTTACAGCATTTAGATGCAAGAAATCTCATATTCTAT
1 ACATACATACATACATACATATATAGTATTTACAGCATTTAGATGCAAGAAA-CTCATATTCTAT
* *
979808 CAATTCTAAGGCATATATAAAGAAACCAACTATGGGTCAACTAATAATTGATTGACAT-ACATAC
65 CAATTCTAAGGCATATATAAA-AAACCAACTATGGGTCAACTAATCATTAATTGACATAAC-TAC
979872 ATACATACATACAT
128 ATACATACATACAT
* * * * * *
979886 ACATACATACATACATACATATACAGTATTCAAAGTATTTAGATGCAATAAAACTCGTATTCTAT
1 ACATACATACATACATACATATATAGTATTTACAGCATTTAGATGCAA-GAAACTCATATTCTAT
* * *
979951 CAATTCTAAGGC-TAATTATTGAAAAACCAACTAT-GGTCAAGTAATCATCAATTGACATAACTA
65 CAATTCTAAGGCAT-A-TA-TAAAAAACCAACTATGGGTCAACTAATCATTAATTGACATAACTA
980014 CATA
127 CATA
980018 TATAGAGAAT
Statistics
Matches: 113, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
141 13 0.12
142 1 0.01
143 78 0.69
144 18 0.16
145 3 0.03
ACGTcount: A:0.43, C:0.18, G:0.10, T:0.30
Consensus pattern (141 bp):
ACATACATACATACATACATATATAGTATTTACAGCATTTAGATGCAAGAAACTCATATTCTATC
AATTCTAAGGCATATATAAAAAACCAACTATGGGTCAACTAATCATTAATTGACATAACTACATA
CATACATACAT
Found at i:981109 original size:18 final size:20
Alignment explanation
Indices: 981073--981109 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
981063 TAAAAATTTA
*
981073 TATATTATATACATTTATTG
1 TATATTATATACATATATTG
981093 TATATTATA-A-ATATATT
1 TATATTATATACATATATT
981110 TTAAAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 6 0.38
19 1 0.06
20 9 0.56
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (20 bp):
TATATTATATACATATATTG
Found at i:985637 original size:68 final size:67
Alignment explanation
Indices: 985532--985770 Score: 178
Period size: 68 Copynumber: 3.4 Consensus size: 67
985522 TTCTTCTATC
* *
985532 AATCT-ACCAATTAGTTTATACGAGCTAAATGGTAGTTTAGATACGATATGAAACATATTTTAAA
1 AATCTAACC-ATTAATTTATACGAGTTAAAT-GTAGTTTAGATA-GATATGAAACATATTTTAAA
*
985596 ATAT-
63 ACATA
* * * * ** * *
985600 GATTTAACCATTAATTTATACGAGTTAAATATCAGTTTAAAATAGATAAAAAAAAACATATCTAA
1 AATCTAACCATTAATTTATACGAGTTAAATGT-AGTTT-AGATAGAT---ATGAAACATATTTTA
985665 AACACATA
61 AA-ACATA
* * * *
985673 AATCTAACCATTAATTTAGACGAGTTAAATGTAAGATTAGATATGAAATGAAGCATATTTTAAAA
1 AATCTAACCATTAATTTATACGAGTTAAATGT-AGTTTAGATA-GATATGAAACATATTTTAAAA
*
985738 CA-C
64 CATA
* * * *
985741 AGTCTAACCATTAGTTTGTACGAGCTAAAT
1 AATCTAACCATTAATTTATACGAGTTAAAT
985771 ACCAATTCTT
Statistics
Matches: 132, Mismatches: 30, Indels: 18
0.73 0.17 0.10
Matches are distributed among these distances:
67 1 0.01
68 55 0.42
69 10 0.08
70 12 0.09
71 13 0.10
72 7 0.05
73 34 0.26
ACGTcount: A:0.45, C:0.11, G:0.12, T:0.32
Consensus pattern (67 bp):
AATCTAACCATTAATTTATACGAGTTAAATGTAGTTTAGATAGATATGAAACATATTTTAAAACA
TA
Found at i:986480 original size:8 final size:8
Alignment explanation
Indices: 986450--986496 Score: 51
Period size: 8 Copynumber: 5.6 Consensus size: 8
986440 CTTTTTTCAG
986450 AAAAAAGCA
1 AAAAAAG-A
*
986459 AGAAAAACGC
1 A-AAAAA-GA
986469 AAAAAA-A
1 AAAAAAGA
986476 AAAAAAGA
1 AAAAAAGA
986484 AAAAAAGA
1 AAAAAAGA
986492 AAAAA
1 AAAAA
986497 GATAGAGAAC
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
7 6 0.18
8 14 0.42
9 6 0.18
10 6 0.18
11 1 0.03
ACGTcount: A:0.83, C:0.06, G:0.11, T:0.00
Consensus pattern (8 bp):
AAAAAAGA
Found at i:986487 original size:15 final size:15
Alignment explanation
Indices: 986469--986498 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
986459 AGAAAAACGC
986469 AAAAAAAAAAAAAGA
1 AAAAAAAAAAAAAGA
*
986484 AAAAAAGAAAAAAGA
1 AAAAAAAAAAAAAGA
986499 TAGAGAACTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAAAGA
Found at i:986494 original size:22 final size:26
Alignment explanation
Indices: 986450--986496 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
986440 CTTTTTTCAG
986450 AAAAAAGCAAGAAAAACGCAAAAAAA
1 AAAAAAGCAAGAAAAACGCAAAAAAA
986476 AAAAAAG-AA-AAAAA-G-AAAAAA
1 AAAAAAGCAAGAAAAACGCAAAAAA
986497 GATAGAGAAC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 6 0.29
23 1 0.05
24 5 0.24
25 2 0.10
26 7 0.33
ACGTcount: A:0.83, C:0.06, G:0.11, T:0.00
Consensus pattern (26 bp):
AAAAAAGCAAGAAAAACGCAAAAAAA
Found at i:988518 original size:20 final size:22
Alignment explanation
Indices: 988493--988533 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
988483 CAATTGAACC
988493 GAAATTTTAA-AATTT-TTTAG
1 GAAATTTTAATAATTTATTTAG
988513 GAAATTTTAATAATTTATTTA
1 GAAATTTTAATAATTTATTTA
988534 ATCGAGCCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
21 5 0.26
22 4 0.21
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.51
Consensus pattern (22 bp):
GAAATTTTAATAATTTATTTAG
Found at i:991012 original size:20 final size:20
Alignment explanation
Indices: 990987--991027 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
990977 GTTTTTTAAA
990987 TTTTC-TAGTATTTTATTTCT
1 TTTTCTTAGTATTTT-TTTCT
991007 TTTTCTTAGTATTTTTTTCT
1 TTTTCTTAGTATTTTTTTCT
991027 T
1 T
991028 AATTTTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.12, C:0.10, G:0.05, T:0.73
Consensus pattern (20 bp):
TTTTCTTAGTATTTTTTTCT
Found at i:994277 original size:49 final size:49
Alignment explanation
Indices: 994222--994321 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
994212 TCATTAAATT
994222 TTTAGGTTATGTTTCTATTAAGGTTAAAATACCCAATAAGTCTTTATAC
1 TTTAGGTTATGTTTCTATTAAGGTTAAAATACCCAATAAGTCTTTATAC
*
994271 TTTAGGTTATGTTTCTATTAAGGTTAAAATACCCTATAAGTCTTTATAC
1 TTTAGGTTATGTTTCTATTAAGGTTAAAATACCCAATAAGTCTTTATAC
994320 TT
1 TT
994322 CATAAATTTG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.31, C:0.12, G:0.12, T:0.45
Consensus pattern (49 bp):
TTTAGGTTATGTTTCTATTAAGGTTAAAATACCCAATAAGTCTTTATAC
Found at i:999908 original size:32 final size:33
Alignment explanation
Indices: 999840--999908 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
999830 TTACGGTTAG
** * *
999840 TGTAAAAATAATGATGATAATAAAATTAAATAC
1 TGTAAAAATAACAATGACAATAAAATAAAATAC
999873 TGTAAAAATAACAATGACAATAAAA-AAAATAC
1 TGTAAAAATAACAATGACAATAAAATAAAATAC
999905 TGTA
1 TGTA
999909 TCGTACCGTA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
32 10 0.31
33 22 0.69
ACGTcount: A:0.59, C:0.06, G:0.09, T:0.26
Consensus pattern (33 bp):
TGTAAAAATAACAATGACAATAAAATAAAATAC
Found at i:1000926 original size:21 final size:21
Alignment explanation
Indices: 1000902--1000943 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
1000892 AAATCACTTA
1000902 AACAAGTCTTTGCATAGCAAT
1 AACAAGTCTTTGCATAGCAAT
1000923 AACAAGTCTTTGCATAGCAAT
1 AACAAGTCTTTGCATAGCAAT
1000944 GTGAAAACTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (21 bp):
AACAAGTCTTTGCATAGCAAT
Found at i:1005337 original size:16 final size:16
Alignment explanation
Indices: 1005318--1005366 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
1005308 GCTTAAAACA
1005318 ACTCAAACTCAAAATG
1 ACTCAAACTCAAAATG
* *
1005334 ACTCGAACTTAAAATG
1 ACTCAAACTCAAAATG
*
1005350 AC-CAAAATCCAAAATG
1 ACTCAAACT-CAAAATG
1005366 A
1 A
1005367 TCATAAAATT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 4 0.15
16 23 0.85
ACGTcount: A:0.51, C:0.22, G:0.08, T:0.18
Consensus pattern (16 bp):
ACTCAAACTCAAAATG
Found at i:1008836 original size:19 final size:19
Alignment explanation
Indices: 1008812--1008851 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
1008802 TATATTGTTA
1008812 TTTTAATACATTATATAAT
1 TTTTAATACATTATATAAT
*
1008831 TTTTAATATATTATATAAT
1 TTTTAATACATTATATAAT
1008850 TT
1 TT
1008852 ATAACACAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (19 bp):
TTTTAATACATTATATAAT
Found at i:1009766 original size:84 final size:84
Alignment explanation
Indices: 1009612--1009807 Score: 230
Period size: 84 Copynumber: 2.3 Consensus size: 84
1009602 AATTAGCTGT
* * * * * * * *
1009612 CTTTAAGATGTTTGATAAAATGTTTGTGTTGGGCCAAATCGACTTGTAGAAGAAATATTAGTGAC
1 CTTTCAGATGTTTGATAATATGTTTGTGTTAGACCAAATCAACTTGTAGAAGAAAAATTAATGAA
*
1009677 CCAAAGTCAAATAAGTTGC
66 CCAAAGACAAATAAGTTGC
* * * *
1009696 CTTTCAGATGTTTGATAATATGTTTGTGTTAGACTAATTCAAGTTTTAGAAGAAAAATTAATGAA
1 CTTTCAGATGTTTGATAATATGTTTGTGTTAGACCAAATCAACTTGTAGAAGAAAAATTAATGAA
* * *
1009761 GCAAAGACAAATTAGTTGT
66 CCAAAGACAAATAAGTTGC
* *
1009780 CTTTCAGATGTTTGAGAATATATTTGTG
1 CTTTCAGATGTTTGATAATATGTTTGTG
1009808 AAGTGTGGTC
Statistics
Matches: 94, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
84 94 1.00
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.36
Consensus pattern (84 bp):
CTTTCAGATGTTTGATAATATGTTTGTGTTAGACCAAATCAACTTGTAGAAGAAAAATTAATGAA
CCAAAGACAAATAAGTTGC
Found at i:1028452 original size:15 final size:15
Alignment explanation
Indices: 1028432--1028460 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
1028422 TTGGCTTGTA
1028432 TTAATTTTTTATATT
1 TTAATTTTTTATATT
1028447 TTAATTTTTTATAT
1 TTAATTTTTTATAT
1028461 AAAAATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (15 bp):
TTAATTTTTTATATT
Found at i:1028761 original size:8 final size:8
Alignment explanation
Indices: 1028744--1028776 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
1028734 GTTCTTATTC
*
1028744 TTATTTTT
1 TTATTGTT
1028752 TTATTGTT
1 TTATTGTT
1028760 TTATTGTT
1 TTATTGTT
1028768 TTATT-TT
1 TTATTGTT
1028775 TT
1 TT
1028777 CACAAAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
7 4 0.17
8 20 0.83
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.82
Consensus pattern (8 bp):
TTATTGTT
Found at i:1032419 original size:2 final size:2
Alignment explanation
Indices: 1032412--1032437 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
1032402 ATCTGTGCAA
1032412 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
1032438 GTCTTTCGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1037430 original size:3 final size:3
Alignment explanation
Indices: 1037422--1037452 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
1037412 TTTCTTGTTT
1037422 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1037453 CAAGACAGCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:1043043 original size:74 final size:75
Alignment explanation
Indices: 1042921--1043069 Score: 291
Period size: 74 Copynumber: 2.0 Consensus size: 75
1042911 TATAATTTTG
1042921 CTCTACAATTGAAGATTTGGGCCCCCCCCCCCAATGGGTCCAAGATGATTAGTGAACAGACAAAA
1 CTCTACAATTGAAGATTTGGGCCCCCCCCCCCAATGGGTCCAAGATGATTAGTGAACAGACAAAA
1042986 GCCTCGATTT
66 GCCTCGATTT
1042996 CTCTACAA-TGAAGATTTGGGCCCCCCCCCCCAATGGGTCCAAGATGATTAGTGAACAGACAAAA
1 CTCTACAATTGAAGATTTGGGCCCCCCCCCCCAATGGGTCCAAGATGATTAGTGAACAGACAAAA
1043060 GCCTCGATTT
66 GCCTCGATTT
1043070 GATCAATCAT
Statistics
Matches: 74, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
74 66 0.89
75 8 0.11
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (75 bp):
CTCTACAATTGAAGATTTGGGCCCCCCCCCCCAATGGGTCCAAGATGATTAGTGAACAGACAAAA
GCCTCGATTT
Found at i:1056656 original size:49 final size:48
Alignment explanation
Indices: 1056597--1056776 Score: 213
Period size: 49 Copynumber: 3.7 Consensus size: 48
1056587 GGCAGTGAGT
1056597 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACAGACCGATGA
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACAGA-CGATGA
* *
1056646 GTGCTGGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGA
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-ACAGAC-GATGA
* * * * * *
1056696 GAG-TCAGTGTAATACCATGTTTGAGACATGACATCGG-CTCGA-GATGA
1 GTGCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGAC-AGACGATGA
*
1056743 GTGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 GTGCTAGTGTAAGACCATGTCTGGGACATGGCAT
1056777 TGGCACCGAC
Statistics
Matches: 110, Mismatches: 16, Indels: 12
0.80 0.12 0.09
Matches are distributed among these distances:
47 31 0.28
48 1 0.01
49 40 0.36
50 38 0.35
ACGTcount: A:0.27, C:0.19, G:0.32, T:0.22
Consensus pattern (48 bp):
GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACAGACGATGA
Found at i:1056713 original size:50 final size:49
Alignment explanation
Indices: 1056597--1056787 Score: 219
Period size: 50 Copynumber: 3.9 Consensus size: 49
1056587 GGCAGTGAGT
*
1056597 GTGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-ACAGACCGATGA
1 GTGC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGATGA
* *
1056646 GTGCTGGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGAGGA
1 GTGC-AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGATGA
* * * * * *
1056696 GAGTCAGTGTAATACCATGTTTGAGACATGACATCGGCTC-G--AGATGA
1 GTG-CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGATGA
* *
1056743 GTGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCACCGACA
1 GTG-CAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACA
1056788 TGTGATCCCA
Statistics
Matches: 118, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
47 37 0.31
48 1 0.01
49 37 0.31
50 42 0.36
51 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.32, T:0.21
Consensus pattern (49 bp):
GTGCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGACAGATGA
Found at i:1058405 original size:15 final size:15
Alignment explanation
Indices: 1058385--1058415 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1058375 GTCCAGTTTA
*
1058385 ATTAAATGATTCAAT
1 ATTAAATGAATCAAT
1058400 ATTAAATGAATCAAT
1 ATTAAATGAATCAAT
1058415 A
1 A
1058416 AAATTCATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.35
Consensus pattern (15 bp):
ATTAAATGAATCAAT
Found at i:1059584 original size:29 final size:29
Alignment explanation
Indices: 1059552--1059608 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
1059542 ATTTTTTTAA
1059552 TTTTTTAATTTTTCAATATTTTAAAATACT
1 TTTTTTAATTTTTCAAT-TTTTAAAATACT
* **
1059582 TTTTTTTATTTTTTTATTTTTAAAATA
1 TTTTTTAATTTTTCAATTTTTAAAATA
1059609 AATTTTTGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.67
Consensus pattern (29 bp):
TTTTTTAATTTTTCAATTTTTAAAATACT
Found at i:1059614 original size:29 final size:30
Alignment explanation
Indices: 1059550--1059615 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
1059540 ATATTTTTTT
1059550 AATTTTTTAATTTTTCAATATTTTAAAATA
1 AATTTTTTAATTTTTCAATATTTTAAAATA
** * **
1059580 CTTTTTTTTATTTTTTTAT-TTTTAAAATA
1 AATTTTTTAATTTTTCAATATTTTAAAATA
1059609 AATTTTT
1 AATTTTT
1059616 GGTGTTTATT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
29 15 0.52
30 14 0.48
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (30 bp):
AATTTTTTAATTTTTCAATATTTTAAAATA
Found at i:1072168 original size:7 final size:7
Alignment explanation
Indices: 1072156--1072192 Score: 74
Period size: 7 Copynumber: 5.3 Consensus size: 7
1072146 GAATTCAAAA
1072156 AAAAATT
1 AAAAATT
1072163 AAAAATT
1 AAAAATT
1072170 AAAAATT
1 AAAAATT
1072177 AAAAATT
1 AAAAATT
1072184 AAAAATT
1 AAAAATT
1072191 AA
1 AA
1072193 TTATAAAATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AAAAATT
Found at i:1072211 original size:14 final size:13
Alignment explanation
Indices: 1072156--1072213 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 13
1072146 GAATTCAAAA
1072156 AAAAATTAAAAATT
1 AAAAATT-AAAATT
1072170 AAAAATTAAAAATT
1 AAAAATT-AAAATT
1072184 AAAAATT--AATT
1 AAAAATTAAAATT
1072195 ATAAAATTATAAATAT
1 A-AAAATTA-AAAT-T
1072211 AAA
1 AAA
1072214 TAATATGTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
11 5 0.13
12 6 0.15
14 21 0.54
15 5 0.13
16 2 0.05
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAAATTAAAATT
Found at i:1077313 original size:18 final size:19
Alignment explanation
Indices: 1077276--1077314 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
1077266 ATACAAAAAT
*
1077276 AATTAAAAATAATTTTTAA
1 AATTAAAAATAATTTATAA
*
1077295 AATTCAAAAT-ATTTATAA
1 AATTAAAAATAATTTATAA
1077313 AA
1 AA
1077315 ATGTTAATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (19 bp):
AATTAAAAATAATTTATAA
Found at i:1078965 original size:91 final size:91
Alignment explanation
Indices: 1078810--1078992 Score: 294
Period size: 91 Copynumber: 2.0 Consensus size: 91
1078800 GTAGACTAGC
* * *
1078810 AAGAGTTTATAAGGAATTCAAAATGTGTCTTATGAAGTGTGTACTATTCTAGAAGACACCCATGA
1 AAGAGTGTACAAGGAATTCAAAATGTGTCTTATGAAGTGTGGACTATTCTAGAAGACACCCATGA
1078875 AGGAACTTATACAGTCAAGCTATCAA
66 AGGAACTTATACAGTCAAGCTATCAA
* * *
1078901 AAGAGTGTACAAGGAATTCAAAATGTGTCTTATGAATTGTGGACTATTCTATAAGCCACCCATGA
1 AAGAGTGTACAAGGAATTCAAAATGTGTCTTATGAAGTGTGGACTATTCTAGAAGACACCCATGA
* *
1078966 AGTAACTTATACGGTCAAGCTATCAA
66 AGGAACTTATACAGTCAAGCTATCAA
1078992 A
1 A
1078993 GCTCCACATG
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
91 84 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (91 bp):
AAGAGTGTACAAGGAATTCAAAATGTGTCTTATGAAGTGTGGACTATTCTAGAAGACACCCATGA
AGGAACTTATACAGTCAAGCTATCAA
Found at i:1082605 original size:117 final size:118
Alignment explanation
Indices: 1082467--1082701 Score: 463
Period size: 117 Copynumber: 2.0 Consensus size: 118
1082457 ATAAAAGTAG
1082467 AATAATTATGTTAAAAATTTTAAAAAATACTAAAATTAAATAAAAATAATTTTTGAAATTTAATT
1 AATAATTATGTTAAAAATTTTAAAAAATACTAAAATTAAATAAAAATAATTTTTGAAATTTAATT
1082532 TTTTTATCTTAGAGTGGGACCATGTGTATTAAATCAAATAAAATTATGAAGAA
66 TTTTTATCTTAGAGTGGGACCATGTGTATTAAATCAAATAAAATTATGAAGAA
1082585 AATAATTATG-TAAAAATTTTAAAAAATACTAAAATTAAATAAAAATAATTTTTGAAATTTAATT
1 AATAATTATGTTAAAAATTTTAAAAAATACTAAAATTAAATAAAAATAATTTTTGAAATTTAATT
1082649 TTTTTATCTTAGAGTGGGACCATGTGTATTAAATCAAATAAAATTATGAAGAA
66 TTTTTATCTTAGAGTGGGACCATGTGTATTAAATCAAATAAAATTATGAAGAA
1082702 TGATAAGTTT
Statistics
Matches: 117, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
117 107 0.91
118 10 0.09
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.38
Consensus pattern (118 bp):
AATAATTATGTTAAAAATTTTAAAAAATACTAAAATTAAATAAAAATAATTTTTGAAATTTAATT
TTTTTATCTTAGAGTGGGACCATGTGTATTAAATCAAATAAAATTATGAAGAA
Found at i:1084332 original size:39 final size:39
Alignment explanation
Indices: 1084265--1084344 Score: 106
Period size: 39 Copynumber: 2.1 Consensus size: 39
1084255 TGCAATTATA
* * * * *
1084265 AAGCGTAGAATTAAACTATTATAGCACAAATGGATTAAG
1 AAGCGTAGAATCAAACAATTACAACACAAATAGATTAAG
*
1084304 AAGCGTAGCATCAAACAATTACAACACAAATAGATTAAG
1 AAGCGTAGAATCAAACAATTACAACACAAATAGATTAAG
1084343 AA
1 AA
1084345 TCAGAATAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.50, C:0.14, G:0.15, T:0.21
Consensus pattern (39 bp):
AAGCGTAGAATCAAACAATTACAACACAAATAGATTAAG
Found at i:1087413 original size:29 final size:29
Alignment explanation
Indices: 1087355--1087415 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
1087345 ATAAATTAAT
*
1087355 AAATGATTAAATTATTTTTAGTCCTCTTA
1 AAATGATTAAATTATTTTTAATCCTCTTA
*
1087384 AAATGA-TAAATTTTTAATTTAATCCT-TTA
1 AAATGATTAAATTATT--TTTAATCCTCTTA
1087413 AAA
1 AAA
1087416 ATTATAAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 8 0.29
29 12 0.43
30 8 0.29
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (29 bp):
AAATGATTAAATTATTTTTAATCCTCTTA
Found at i:1094484 original size:22 final size:22
Alignment explanation
Indices: 1094459--1094501 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
1094449 TATTCAAATA
1094459 ATAACAATAAAAT-AGTAGTAAC
1 ATAACAATAAAATGA-TAGTAAC
*
1094481 ATAACAATGAAATGATAGTAA
1 ATAACAATAAAATGATAGTAA
1094502 AACAGTGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.58, C:0.07, G:0.12, T:0.23
Consensus pattern (22 bp):
ATAACAATAAAATGATAGTAAC
Found at i:1094536 original size:22 final size:22
Alignment explanation
Indices: 1094511--1094555 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
1094501 AAACAGTGAG
1094511 AAAACAACAAAAAAAATAGCAAA
1 AAAACAA-AAAAAAAATAGCAAA
* *
1094534 AAAACAAAAAGAAAATATCAAA
1 AAAACAAAAAAAAAATAGCAAA
1094556 TTTCTTTTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.78, C:0.11, G:0.04, T:0.07
Consensus pattern (22 bp):
AAAACAAAAAAAAAATAGCAAA
Found at i:1095661 original size:23 final size:24
Alignment explanation
Indices: 1095623--1095668 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
1095613 ATACTCTAGT
*
1095623 AAAAAAATATAAGTACTAAATTAA
1 AAAAAAATATAAGTACCAAATTAA
*
1095647 AAAAAAAT-TAGGTACCAAATTA
1 AAAAAAATATAAGTACCAAATTA
1095669 TATATTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.24
Consensus pattern (24 bp):
AAAAAAATATAAGTACCAAATTAA
Found at i:1099495 original size:17 final size:20
Alignment explanation
Indices: 1099454--1099496 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
1099444 TTGCTACTAC
1099454 TTTGTTGTTATTGTATAACT
1 TTTGTTGTTATTGTATAACT
*
1099474 CTTGTT-TTATTGT-TAA-T
1 TTTGTTGTTATTGTATAACT
1099491 TTTGTT
1 TTTGTT
1099497 ACTACTTTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 6 0.29
18 3 0.14
19 7 0.33
20 5 0.24
ACGTcount: A:0.16, C:0.05, G:0.14, T:0.65
Consensus pattern (20 bp):
TTTGTTGTTATTGTATAACT
Found at i:1103495 original size:24 final size:25
Alignment explanation
Indices: 1103468--1103523 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
1103458 TAAATTGTGT
*
1103468 ATTTTTATTA-TATATAATTTTATA
1 ATTTTTAATAGTATATAATTTTATA
* *
1103492 A-TTTTAATAGTTTATATTTTTATA
1 ATTTTTAATAGTATATAATTTTATA
1103516 ATTTTTAA
1 ATTTTTAA
1103524 ATTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 7 0.26
24 14 0.52
25 6 0.22
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (25 bp):
ATTTTTAATAGTATATAATTTTATA
Found at i:1104878 original size:28 final size:28
Alignment explanation
Indices: 1104841--1104908 Score: 95
Period size: 30 Copynumber: 2.4 Consensus size: 28
1104831 TATTTTAAAT
*
1104841 ATTTTAAAAATATTTTAAAATTAAAAAA
1 ATTTAAAAAATATTTTAAAATTAAAAAA
1104869 ATTTAAAAAAAGTATTTTAAAATTAAAAAA
1 ATTT-AAAAAA-TATTTTAAAATTAAAAAA
1104899 A--TAAAAAATA
1 ATTTAAAAAATA
1104909 AAAATATTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
26 2 0.05
27 6 0.16
28 5 0.14
29 5 0.14
30 19 0.51
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (28 bp):
ATTTAAAAAATATTTTAAAATTAAAAAA
Found at i:1107997 original size:28 final size:27
Alignment explanation
Indices: 1107957--1108030 Score: 94
Period size: 29 Copynumber: 2.6 Consensus size: 27
1107947 CACGACCTAC
* *
1107957 CACATGGCCGTGTGGTCATCGTGTGGAT
1 CACATGGCCGTGTGGTC-CCATGTGGAT
1107985 CACATGGCCGTGTGGTTGCCCATGTGGAT
1 CACATGGCCGTGTGG-T-CCCATGTGGAT
*
1108014 CACACGGCCGTGTGGTC
1 CACATGGCCGTGTGGTC
1108031 GCCCGTGTGG
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
27 1 0.02
28 16 0.39
29 23 0.56
30 1 0.02
ACGTcount: A:0.14, C:0.26, G:0.35, T:0.26
Consensus pattern (27 bp):
CACATGGCCGTGTGGTCCCATGTGGAT
Found at i:1108022 original size:29 final size:29
Alignment explanation
Indices: 1107978--1108040 Score: 99
Period size: 29 Copynumber: 2.2 Consensus size: 29
1107968 GTGGTCATCG
* *
1107978 TGTGGATCACATGGCCGTGTGGTTGCCCA
1 TGTGGATCACACGGCCGTGTGGTCGCCCA
*
1108007 TGTGGATCACACGGCCGTGTGGTCGCCCG
1 TGTGGATCACACGGCCGTGTGGTCGCCCA
1108036 TGTGG
1 TGTGG
1108041 CTCCTATGGC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.11, C:0.25, G:0.38, T:0.25
Consensus pattern (29 bp):
TGTGGATCACACGGCCGTGTGGTCGCCCA
Found at i:1117674 original size:20 final size:20
Alignment explanation
Indices: 1117619--1117674 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
1117609 TATGTTGAAC
1117619 ATCATAGAAAATTA-TTAAAA
1 ATCATA-AAAATTATTTAAAA
**
1117639 ATCATATTAATTATTTAAAA
1 ATCATAAAAATTATTTAAAA
*
1117659 CTCATAAAAATTATTT
1 ATCATAAAAATTATTT
1117675 TTTTGGCATC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 5 0.17
20 25 0.83
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.39
Consensus pattern (20 bp):
ATCATAAAAATTATTTAAAA
Found at i:1117763 original size:20 final size:21
Alignment explanation
Indices: 1117738--1117787 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
1117728 GTTTCCAATA
1117738 AAAATTTGAGTTTTT-A-TTAG
1 AAAA-TTGAGTTTTTCATTTAG
*
1117758 AAAATTGTGTTTTTCATTTAG
1 AAAATTGAGTTTTTCATTTAG
1117779 -AAATTGAGT
1 AAAATTGAGT
1117788 AAATAGTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 9 0.35
20 13 0.50
21 4 0.15
ACGTcount: A:0.34, C:0.02, G:0.16, T:0.48
Consensus pattern (21 bp):
AAAATTGAGTTTTTCATTTAG
Found at i:1117778 original size:21 final size:20
Alignment explanation
Indices: 1117738--1117781 Score: 54
Period size: 19 Copynumber: 2.1 Consensus size: 20
1117728 GTTTCCAATA
1117738 AAAATTTGAGTTTTTATTAG
1 AAAATTTGAGTTTTTATTAG
*
1117758 AAAA-TTGTGTTTTTCATTTAG
1 AAAATTTGAGTTTTT-A-TTAG
1117779 AAA
1 AAA
1117782 TTGAGTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 9 0.43
20 5 0.24
21 7 0.33
ACGTcount: A:0.36, C:0.02, G:0.14, T:0.48
Consensus pattern (20 bp):
AAAATTTGAGTTTTTATTAG
Found at i:1119291 original size:18 final size:18
Alignment explanation
Indices: 1119268--1119303 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
1119258 TGAATTTTAG
*
1119268 ACCTTCATACATATCAAT
1 ACCTTCACACATATCAAT
*
1119286 ACCTTCACATATATCAAT
1 ACCTTCACACATATCAAT
1119304 TACTTCATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.28, G:0.00, T:0.33
Consensus pattern (18 bp):
ACCTTCACACATATCAAT
Found at i:1121025 original size:18 final size:18
Alignment explanation
Indices: 1121002--1121037 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
1120992 TGAATTTTAG
*
1121002 ACCTTCATACATATCAAT
1 ACCTTCACACATATCAAT
*
1121020 ACCTTCACATATATCAAT
1 ACCTTCACACATATCAAT
1121038 TACTTCATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.28, G:0.00, T:0.33
Consensus pattern (18 bp):
ACCTTCACACATATCAAT
Found at i:1122759 original size:18 final size:18
Alignment explanation
Indices: 1122736--1122771 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
1122726 TGAATTTTAG
*
1122736 ACCTTCATACATATCAAT
1 ACCTTCACACATATCAAT
*
1122754 ACCTTCACATATATCAAT
1 ACCTTCACACATATCAAT
1122772 TACTTCATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.28, G:0.00, T:0.33
Consensus pattern (18 bp):
ACCTTCACACATATCAAT
Found at i:1123093 original size:14 final size:14
Alignment explanation
Indices: 1123074--1123102 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
1123064 TTAAGTAAAA
1123074 CAACCAAACTGGCC
1 CAACCAAACTGGCC
1123088 CAACCAAACTGGCC
1 CAACCAAACTGGCC
1123102 C
1 C
1123103 GGTGATTGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.45, G:0.14, T:0.07
Consensus pattern (14 bp):
CAACCAAACTGGCC
Found at i:1123796 original size:20 final size:20
Alignment explanation
Indices: 1123741--1123796 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
1123731 TATGTTGAAC
1123741 ATCATAGAAAATTA-TTAAAA
1 ATCATA-AAAATTATTTAAAA
**
1123761 ATCATATTAATTATTTAAAA
1 ATCATAAAAATTATTTAAAA
*
1123781 CTCATAAAAATTATTT
1 ATCATAAAAATTATTT
1123797 TTTTGGCATC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
19 5 0.17
20 25 0.83
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.39
Consensus pattern (20 bp):
ATCATAAAAATTATTTAAAA
Found at i:1123885 original size:20 final size:21
Alignment explanation
Indices: 1123860--1123909 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
1123850 GTTTCCAATA
1123860 AAAATTTGAGTTTTT-A-TTAG
1 AAAA-TTGAGTTTTTCATTTAG
*
1123880 AAAATTGTGTTTTTCATTTAG
1 AAAATTGAGTTTTTCATTTAG
1123901 -AAATTGAGT
1 AAAATTGAGT
1123910 AAATAGTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 9 0.35
20 13 0.50
21 4 0.15
ACGTcount: A:0.34, C:0.02, G:0.16, T:0.48
Consensus pattern (21 bp):
AAAATTGAGTTTTTCATTTAG
Found at i:1123900 original size:21 final size:20
Alignment explanation
Indices: 1123860--1123903 Score: 54
Period size: 19 Copynumber: 2.1 Consensus size: 20
1123850 GTTTCCAATA
1123860 AAAATTTGAGTTTTTATTAG
1 AAAATTTGAGTTTTTATTAG
*
1123880 AAAA-TTGTGTTTTTCATTTAG
1 AAAATTTGAGTTTTT-A-TTAG
1123901 AAA
1 AAA
1123904 TTGAGTAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 9 0.43
20 5 0.24
21 7 0.33
ACGTcount: A:0.36, C:0.02, G:0.14, T:0.48
Consensus pattern (20 bp):
AAAATTTGAGTTTTTATTAG
Found at i:1131211 original size:41 final size:41
Alignment explanation
Indices: 1131129--1131224 Score: 129
Period size: 41 Copynumber: 2.3 Consensus size: 41
1131119 CATCGGCACG
* **
1131129 AAGCCTGCTAGGCATAAAGCCTGATCTAATACACCAACATA
1 AAGCCTGCTAGGCATAAAGCCCGATAAAATACACCAACATA
** **
1131170 AAGCCTGCTAGGCATAAAGCCCGATAAAATTTACCGGCATA
1 AAGCCTGCTAGGCATAAAGCCCGATAAAATACACCAACATA
1131211 AAGCCTGCTAGGCA
1 AAGCCTGCTAGGCA
1131225 CAGAGCCTGA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 48 1.00
ACGTcount: A:0.36, C:0.26, G:0.19, T:0.19
Consensus pattern (41 bp):
AAGCCTGCTAGGCATAAAGCCCGATAAAATACACCAACATA
Found at i:1141365 original size:18 final size:18
Alignment explanation
Indices: 1141342--1141377 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
1141332 TGAATTTTAG
*
1141342 ACCTTCATACATATCAAT
1 ACCTTCACACATATCAAT
*
1141360 ACCTTCACATATATCAAT
1 ACCTTCACACATATCAAT
1141378 TACTTCATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.28, G:0.00, T:0.33
Consensus pattern (18 bp):
ACCTTCACACATATCAAT
Found at i:1142874 original size:21 final size:23
Alignment explanation
Indices: 1142849--1142892 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
1142839 AAAATAACTT
*
1142849 TTTTTTAT-CATTAAATATATGA
1 TTTTCTATCCATTAAATATATGA
* *
1142871 TTTTCTCTCCATTATATATATG
1 TTTTCTATCCATTAAATATATG
1142893 GTTACAGATT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.30, C:0.11, G:0.05, T:0.55
Consensus pattern (23 bp):
TTTTCTATCCATTAAATATATGA
Found at i:1151664 original size:16 final size:17
Alignment explanation
Indices: 1151643--1151674 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
1151633 TTATAAACAA
1151643 AAGAAAGAAA-AGAAAT
1 AAGAAAGAAACAGAAAT
1151659 AAGAAAGAAACAGAAA
1 AAGAAAGAAACAGAAA
1151675 GCTCAAAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.75, C:0.03, G:0.19, T:0.03
Consensus pattern (17 bp):
AAGAAAGAAACAGAAAT
Found at i:1152707 original size:106 final size:107
Alignment explanation
Indices: 1152575--1152804 Score: 435
Period size: 106 Copynumber: 2.2 Consensus size: 107
1152565 GGATTGAAAA
* *
1152575 ATTGATTTGAATTGTGACCATGAGAAATTGTGAATTGAATGAAATTAAAATGAAGTATGAATATG
1 ATTGAATTAAATTGTGACCATGAGAAATTGTGAATTGAATGAAATTAAAATGAAGTATGAATATG
1152640 TATGAGCATTTGATGGTTTACTGATTGGAAAGTGAAAAATGT
66 TATGAGCATTTGATGGTTTACTGATTGGAAAGTGAAAAATGT
1152682 ATTGAATTAAATTGTGA-CATGAGAAATTGTGAATTGAATGAAATTAAAATGAAGTATGAATATG
1 ATTGAATTAAATTGTGACCATGAGAAATTGTGAATTGAATGAAATTAAAATGAAGTATGAATATG
1152746 TATGAGCATTTGATGGTTTACTGATTGGAAAGTGAAAAATGT
66 TATGAGCATTTGATGGTTTACTGATTGGAAAGTGAAAAATGT
1152788 ATTGAATTAAATTGTGA
1 ATTGAATTAAATTGTGA
1152805 TTAAATTGGA
Statistics
Matches: 121, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
106 106 0.88
107 15 0.12
ACGTcount: A:0.40, C:0.03, G:0.23, T:0.35
Consensus pattern (107 bp):
ATTGAATTAAATTGTGACCATGAGAAATTGTGAATTGAATGAAATTAAAATGAAGTATGAATATG
TATGAGCATTTGATGGTTTACTGATTGGAAAGTGAAAAATGT
Found at i:1156119 original size:50 final size:50
Alignment explanation
Indices: 1156044--1156147 Score: 199
Period size: 50 Copynumber: 2.1 Consensus size: 50
1156034 CCATAAAAAG
1156044 ATCAACAATGAATTAATAGCATTTCCAACTTCTGTATGTTATTAATGGAA
1 ATCAACAATGAATTAATAGCATTTCCAACTTCTGTATGTTATTAATGGAA
*
1156094 ATCAACAATGAATTAATAGCATTTCCAACTTCTGTATGTTATTAATGGCA
1 ATCAACAATGAATTAATAGCATTTCCAACTTCTGTATGTTATTAATGGAA
1156144 ATCA
1 ATCA
1156148 GTTTGGTTAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.36
Consensus pattern (50 bp):
ATCAACAATGAATTAATAGCATTTCCAACTTCTGTATGTTATTAATGGAA
Found at i:1158023 original size:162 final size:162
Alignment explanation
Indices: 1157736--1158060 Score: 510
Period size: 162 Copynumber: 2.0 Consensus size: 162
1157726 GTAAACCACA
* * *
1157736 CAGTTGGTCACTCAACTTTTATATGTATTCATTTTGGGCACCAAATTTAAAAGTTTACAATTTAG
1 CAGTTGGCCACTCAACTTTTATAAGTATTCATTTTGGACACCAAATTTAAAAGTTTACAATTTAG
* * *
1157801 GTACTGTCGTTATATACTTTTATCATTTTAGTCACTATCATTACATACTTTTTTTATCATTTTAG
66 GTACTGTCATTATATACTTTTATCATTTTAGCCACTATCATTACATACTTTTTATATCATTTTAG
* *
1157866 TCACCCATCGTTAATTTGT-CATTAAATATACT
131 TCACCCACCATTAATTT-TCCATTAAATATACT
* *
1157898 CAGTTGGCCACTTAACTTTTATAAGTATTCATTTTGGACACCAAAATTTAAAAGTTTGCAATTTA
1 CAGTTGGCCACTCAACTTTTATAAGTATTCATTTTGGACACC-AAATTTAAAAGTTTACAATTTA
* *
1157963 GGTACTGTTATTATATACTTTTATCATTTTAGCCACTATCGTTACATAC-TTTTATATCATTTTA
65 GGTACTGTCATTATATACTTTTATCATTTTAGCCACTATCATTACATACTTTTTATATCATTTTA
1158027 GTCACCCACCATTAATTTTCCATTAAATATACT
130 GTCACCCACCATTAATTTTCCATTAAATATACT
1158060 C
1 C
1158061 TTTTTTAATC
Statistics
Matches: 149, Mismatches: 12, Indels: 4
0.90 0.07 0.02
Matches are distributed among these distances:
161 1 0.01
162 82 0.55
163 66 0.44
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.44
Consensus pattern (162 bp):
CAGTTGGCCACTCAACTTTTATAAGTATTCATTTTGGACACCAAATTTAAAAGTTTACAATTTAG
GTACTGTCATTATATACTTTTATCATTTTAGCCACTATCATTACATACTTTTTATATCATTTTAG
TCACCCACCATTAATTTTCCATTAAATATACT
Found at i:1158187 original size:23 final size:23
Alignment explanation
Indices: 1158161--1158206 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
1158151 TCTAAAAAGA
*
1158161 TAAATTAGTTTTTC-AGTAAAAAC
1 TAAAGTAGTTTTTCTA-TAAAAAC
*
1158184 TAAAGTATTTTTTCTATAAAAAC
1 TAAAGTAGTTTTTCTATAAAAAC
1158207 CTAGGTAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (23 bp):
TAAAGTAGTTTTTCTATAAAAAC
Found at i:1159631 original size:14 final size:13
Alignment explanation
Indices: 1159612--1159645 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
1159602 TTTAGAAATA
1159612 AAAAAAATAGATTC
1 AAAAAAA-AGATTC
1159626 -AAAAAAAGATTC
1 AAAAAAAAGATTC
1159638 AAAAAAAA
1 AAAAAAAA
1159646 CTAAATGTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.32
13 13 0.68
ACGTcount: A:0.74, C:0.06, G:0.06, T:0.15
Consensus pattern (13 bp):
AAAAAAAAGATTC
Found at i:1159635 original size:12 final size:12
Alignment explanation
Indices: 1159613--1159644 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
1159603 TTAGAAATAA
1159613 AAAAAATAGATTC
1 AAAAAA-AGATTC
1159626 AAAAAAAGATTC
1 AAAAAAAGATTC
1159638 AAAAAAA
1 AAAAAAA
1159645 ACTAAATGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.68
13 6 0.32
ACGTcount: A:0.72, C:0.06, G:0.06, T:0.16
Consensus pattern (12 bp):
AAAAAAAGATTC
Found at i:1160460 original size:3 final size:3
Alignment explanation
Indices: 1160447--1160494 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
1160437 AGATTTCTAC
* * * *
1160447 TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT CAT TAT TAC TGT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1160495 ATTTATCTTT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:1161772 original size:19 final size:19
Alignment explanation
Indices: 1161748--1161786 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
1161738 TCACATATAG
*
1161748 TTATATGTCTCATCAATAA
1 TTATATGTCACATCAATAA
1161767 TTATATGTCACATCAATAA
1 TTATATGTCACATCAATAA
1161786 T
1 T
1161787 ACAAATAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.38, C:0.15, G:0.05, T:0.41
Consensus pattern (19 bp):
TTATATGTCACATCAATAA
Found at i:1163768 original size:15 final size:15
Alignment explanation
Indices: 1163754--1163806 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 15
1163744 GTTATTTTTT
1163754 CTTCTTTTTTCTTTTC
1 CTTCTTTTTTC-TTTC
*
1163770 ATTCTCTTTTTCTTCTC
1 CTTCT-TTTTTCTT-TC
* *
1163787 CCTCTATTTTCTTTC
1 CTTCTTTTTTCTTTC
1163802 CTTCT
1 CTTCT
1163807 CCATTTCTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
15 6 0.20
16 13 0.43
17 11 0.37
ACGTcount: A:0.04, C:0.30, G:0.00, T:0.66
Consensus pattern (15 bp):
CTTCTTTTTTCTTTC
Found at i:1169562 original size:169 final size:169
Alignment explanation
Indices: 1169245--1169562 Score: 381
Period size: 169 Copynumber: 1.9 Consensus size: 169
1169235 ATAATTATAG
* * * * * *
1169245 GTAAACATAAGTAGGAATGTGATGAGTTATATAAACTTCTAATGGAGTTGCTTTAGGACTCATTA
1 GTAAACAAAAGCAGGAAGGCGAGGAGTTATATAAACTTCTAATGGAGTTGCTTTAGAACTCATTA
*** * ** * *
1169310 ATTTGACTGCTTCAGACATATCGACTGGATTGTTTGATGGAGTTTCAAACTCGAACCAATGCAGC
66 ATCCAACTCCTTCAGACATATCGACTGGATTGCCTGATGGAGTTTCAAACTCAAACCAATGCAAC
**
1169375 AAATTACCCAGGGTAAGCTCTAATGGAGTTAGTGGAATT
131 AAATTACCCAACGTAAGCTCTAATGGAGTTAGTGGAATT
* *
1169414 GTAAACAAAAGCAGGAAGGCGAGGAGTTATATGAACTTCTAATGGAGTTGCTTTAGAACTCGTT-
1 GTAAACAAAAGCAGGAAGGCGAGGAGTTATATAAACTTCTAATGGAGTTGCTTTAGAACTCATTA
* * *
1169478 ATCCCAAGTCCTTCATG-CATATCGACT-GCTATGCCTGATGGGGTTTCAAACTCAAACCAATGC
66 AT-CCAACTCCTTCA-GACATATCGACTGGAT-TGCCTGATGGAGTTTCAAACTCAAACCAATGC
* *
1169541 AACACATTAGCCAACGTAAGCT
128 AACAAATTACCCAACGTAAGCT
1169563 GTAAAACTTG
Statistics
Matches: 123, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
168 4 0.03
169 118 0.96
170 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.29
Consensus pattern (169 bp):
GTAAACAAAAGCAGGAAGGCGAGGAGTTATATAAACTTCTAATGGAGTTGCTTTAGAACTCATTA
ATCCAACTCCTTCAGACATATCGACTGGATTGCCTGATGGAGTTTCAAACTCAAACCAATGCAAC
AAATTACCCAACGTAAGCTCTAATGGAGTTAGTGGAATT
Found at i:1171358 original size:19 final size:18
Alignment explanation
Indices: 1171335--1171379 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 18
1171325 AAAAAAAAAG
*
1171335 ATTTTTGAAAAAAGATTT-
1 ATTTTTTAAAAAA-ATTTA
1171353 ATTTTTATAAAAAAATTTA
1 ATTTTT-TAAAAAAATTTA
1171372 ATTTTTTA
1 ATTTTTTA
1171380 TGGTGTTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 12 0.50
19 12 0.50
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (18 bp):
ATTTTTTAAAAAAATTTA
Found at i:1171664 original size:44 final size:43
Alignment explanation
Indices: 1171615--1171748 Score: 126
Period size: 44 Copynumber: 3.0 Consensus size: 43
1171605 ATTATTAAGC
1171615 TAGAATACAAACAATAACAAATTAGAAAAATTACCCTTCTAAAT
1 TAGAATACAAACAATAACAAATTA-AAAAATTACCCTTCTAAAT
* * * * * * **
1171659 TAGAATACAAATAATAACAAAATATATAA-TACTCAATTATTAAGC
1 TAGAATACAAACAATAACAAATTAAAAAATTAC-C-CTT-CTAAAT
* *
1171704 TAGAATACAAACAATAACAACTTAAAAAAATTACACTTCTAAAT
1 TAGAATACAAACAATAACAAATT-AAAAAATTACCCTTCTAAAT
1171748 T
1 T
1171749 CTTTTATACC
Statistics
Matches: 67, Mismatches: 18, Indels: 10
0.71 0.19 0.11
Matches are distributed among these distances:
42 3 0.04
43 4 0.06
44 28 0.42
45 25 0.37
46 4 0.06
47 3 0.04
ACGTcount: A:0.55, C:0.14, G:0.04, T:0.27
Consensus pattern (43 bp):
TAGAATACAAACAATAACAAATTAAAAAATTACCCTTCTAAAT
Found at i:1171713 original size:45 final size:45
Alignment explanation
Indices: 1171590--1171723 Score: 139
Period size: 44 Copynumber: 3.0 Consensus size: 45
1171580 CAAATTAAAT
*
1171590 ATATAATATTACTCAATTATTAAGCTAGAATACAAACAATAACAAA
1 ATAT-ATAATACTCAATTATTAAGCTAGAATACAAACAATAACAAA
* * * * * ** *
1171636 TTAGAAAAATTAC-C-CTT-CTAAATTAGAATACAAATAATAACAAA
1 ATA-TATAA-TACTCAATTATTAAGCTAGAATACAAACAATAACAAA
1171680 ATATATAATACTCAATTATTAAGCTAGAATACAAACAATAACAA
1 ATATATAATACTCAATTATTAAGCTAGAATACAAACAATAACAA
1171724 CTTAAAAAAA
Statistics
Matches: 66, Mismatches: 17, Indels: 11
0.70 0.18 0.12
Matches are distributed among these distances:
42 3 0.05
43 4 0.06
44 27 0.41
45 24 0.36
46 5 0.08
47 3 0.05
ACGTcount: A:0.54, C:0.13, G:0.04, T:0.28
Consensus pattern (45 bp):
ATATATAATACTCAATTATTAAGCTAGAATACAAACAATAACAAA
Found at i:1172599 original size:17 final size:17
Alignment explanation
Indices: 1172553--1172605 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 17
1172543 TTATTTTCAA
1172553 AATTTATTATTAAAATAA-
1 AATTTA-TATT-AAATAAT
1172571 AATTAATATATTAAATAAT
1 AATT--TATATTAAATAAT
1172590 AATTTATATT-AATAAT
1 AATTTATATTAAATAAT
1172606 TTATTATATG
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
16 6 0.19
17 6 0.19
18 10 0.31
19 8 0.25
20 2 0.06
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
AATTTATATTAAATAAT
Found at i:1175219 original size:50 final size:50
Alignment explanation
Indices: 1175160--1175263 Score: 199
Period size: 50 Copynumber: 2.1 Consensus size: 50
1175150 CTATAAAAAG
*
1175160 ATCAACAATGAATTAATAGCATTTCCAACTTCTGTATGTTATTAATGGCA
1 ATCAACAATGAATTAATAGCATTTCCAACTTCTGTATGATATTAATGGCA
1175210 ATCAACAATGAATTAATAGCATTTCCAACTTCTGTATGATATTAATGGCA
1 ATCAACAATGAATTAATAGCATTTCCAACTTCTGTATGATATTAATGGCA
1175260 ATCA
1 ATCA
1175264 GTTTGGTTAA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.35
Consensus pattern (50 bp):
ATCAACAATGAATTAATAGCATTTCCAACTTCTGTATGATATTAATGGCA
Found at i:1176849 original size:31 final size:32
Alignment explanation
Indices: 1176814--1176875 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 32
1176804 TTAGGTACTG
*
1176814 TCGTTATATAC-TTTTATCATTTTAGTCACTA
1 TCGTTACATACTTTTTATCATTTTAGTCACTA
1176845 TCGTTACATACTTTTTTATCATTTTAGTCAC
1 TCGTTACATAC-TTTTTATCATTTTAGTCAC
1176876 CCACTGTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 10 0.36
33 18 0.64
ACGTcount: A:0.24, C:0.18, G:0.06, T:0.52
Consensus pattern (32 bp):
TCGTTACATACTTTTTATCATTTTAGTCACTA
Found at i:1177655 original size:21 final size:22
Alignment explanation
Indices: 1177613--1177662 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 22
1177603 CACATGCGTG
*
1177613 GGATTTTTCTTGAAATTATCTT
1 GGATTTTTCTGGAAATTATCTT
* *
1177635 GGATTTTTC-GGATATTTTCTT
1 GGATTTTTCTGGAAATTATCTT
1177656 GG-TTTTT
1 GGATTTTT
1177663 ATTGAGTTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 5 0.20
21 11 0.44
22 9 0.36
ACGTcount: A:0.16, C:0.08, G:0.18, T:0.58
Consensus pattern (22 bp):
GGATTTTTCTGGAAATTATCTT
Found at i:1177707 original size:15 final size:16
Alignment explanation
Indices: 1177679--1177711 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
1177669 TTAATTTTGA
1177679 TTATAATTAATTAAAT
1 TTATAATTAATTAAAT
*
1177695 TTAT-ATTATTTAAAT
1 TTATAATTAATTAAAT
1177710 TT
1 TT
1177712 CTGATCAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
TTATAATTAATTAAAT
Found at i:1178251 original size:19 final size:19
Alignment explanation
Indices: 1178227--1178265 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
1178217 TAACAGATAG
*
1178227 TTATATTTCTCATCAATAA
1 TTATATCTCTCATCAATAA
1178246 TTATATCTCTCATCAATAA
1 TTATATCTCTCATCAATAA
1178265 T
1 T
1178266 ACAAATAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.36, C:0.18, G:0.00, T:0.46
Consensus pattern (19 bp):
TTATATCTCTCATCAATAA
Found at i:1179546 original size:46 final size:45
Alignment explanation
Indices: 1179475--1179604 Score: 172
Period size: 46 Copynumber: 2.8 Consensus size: 45
1179465 ACAATGCTAT
*
1179475 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTT-ACTGAAATACCATACCTACGTTTCAC
* *
1179521 GACTCAGTACGGTTTTCTTAGCTGAAATACCATACCTACGTTTCAC
1 AACTCAGTATGGTTTTCTTA-CTGAAATACCATACCTACGTTTCAC
* * *
1179567 AACTCAATATGGTTTACTTTACTGAAATA-CTTACCTAC
1 AACTCAGTATGGTTTTC-TTACTGAAATACCATACCTAC
1179605 ATTCCACACT
Statistics
Matches: 74, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
45 9 0.12
46 62 0.84
47 3 0.04
ACGTcount: A:0.29, C:0.25, G:0.11, T:0.35
Consensus pattern (45 bp):
AACTCAGTATGGTTTTCTTACTGAAATACCATACCTACGTTTCAC
Found at i:1194222 original size:145 final size:146
Alignment explanation
Indices: 1193948--1194238 Score: 575
Period size: 145 Copynumber: 2.0 Consensus size: 146
1193938 ACACATTAGC
1193948 CAACGTAAGCTGTAAAACTTGAAGTGCAAATGAAACTCCGGGGCACATTCTTCTACCACTTCCAA
1 CAACGTAAGCTGTAAAACTTGAAGTGCAAATGAAACTCCGGGGCACATTCTTCTACCACTTCCAA
1194013 ATGGAACTAGTTCAAAATTCTGTCCCCTCACATCAATGTCTTTGTGGGTAGTTATAAATCTTTCA
66 ATGGAACTAGTTCAAAATTCTGTCCCCTCACATCAATGTCTTTGTGGGTAGTTATAAATCTTTCA
1194078 GGTTGAAATTCAAAAG
131 GGTTGAAATTCAAAAG
1194094 CAACGTAAGC-GTAAAACTTGAAGTGCAAATGAAACTCCGGGGCACATTCTTCTACCACTTCCAA
1 CAACGTAAGCTGTAAAACTTGAAGTGCAAATGAAACTCCGGGGCACATTCTTCTACCACTTCCAA
1194158 ATGGAACTAGTTCAAAATTCTGTCCCCTCACATCAATGTCTTTGTGGGTAGTTATAAATCTTTCA
66 ATGGAACTAGTTCAAAATTCTGTCCCCTCACATCAATGTCTTTGTGGGTAGTTATAAATCTTTCA
1194223 GGTTGAAATTCAAAAG
131 GGTTGAAATTCAAAAG
1194239 GGTTTGCCCA
Statistics
Matches: 145, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
145 135 0.93
146 10 0.07
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.29
Consensus pattern (146 bp):
CAACGTAAGCTGTAAAACTTGAAGTGCAAATGAAACTCCGGGGCACATTCTTCTACCACTTCCAA
ATGGAACTAGTTCAAAATTCTGTCCCCTCACATCAATGTCTTTGTGGGTAGTTATAAATCTTTCA
GGTTGAAATTCAAAAG
Found at i:1195919 original size:17 final size:17
Alignment explanation
Indices: 1195870--1195926 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
1195860 TTGAAAATGA
*
1195870 TTTTCAAAAAAATTGAT
1 TTTTCAAAAAAATTTAT
* *
1195887 TTTTGAAAAATGATTTAT
1 TTTTCAAAAA-AATTTAT
*
1195905 TTTTCTAAAAAATTTAAT
1 TTTTCAAAAAAATTT-AT
1195923 TTTT
1 TTTT
1195927 TATGGTGTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
17 13 0.41
18 19 0.59
ACGTcount: A:0.40, C:0.04, G:0.05, T:0.51
Consensus pattern (17 bp):
TTTTCAAAAAAATTTAT
Found at i:1196187 original size:22 final size:22
Alignment explanation
Indices: 1196162--1196232 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
1196152 ATTATTAAGC
1196162 TAGAATACAAACAATAACAAAT
1 TAGAATACAAACAATAACAAAT
** *
1196184 TAGAA-A-AATTACCCT-TCTAAAT
1 TAGAATACAA--ACAATAAC-AAAT
*
1196206 TAGAATACAAATAATAACAAAT
1 TAGAATACAAACAATAACAAAT
1196228 TAGAA
1 TAGAA
1196233 GACCAAGTAC
Statistics
Matches: 36, Mismatches: 7, Indels: 12
0.65 0.13 0.22
Matches are distributed among these distances:
20 2 0.06
21 2 0.06
22 28 0.78
23 2 0.06
24 2 0.06
ACGTcount: A:0.58, C:0.13, G:0.06, T:0.24
Consensus pattern (22 bp):
TAGAATACAAACAATAACAAAT
Found at i:1199499 original size:15 final size:16
Alignment explanation
Indices: 1199473--1199506 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
1199463 TACATAAACA
1199473 TAAATGAATAATAAAT
1 TAAATGAATAATAAAT
*
1199489 TAAAT-AATAATATAT
1 TAAATGAATAATAAAT
1199504 TAA
1 TAA
1199507 CATTTTCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (16 bp):
TAAATGAATAATAAAT
Found at i:1205224 original size:2 final size:2
Alignment explanation
Indices: 1205217--1205270 Score: 99
Period size: 2 Copynumber: 27.0 Consensus size: 2
1205207 ATGTATATCA
*
1205217 AG AG AG AG AG GG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1205259 AG AG AG AG AG AG
1 AG AG AG AG AG AG
1205271 CTATTTTCTA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1214630 original size:16 final size:18
Alignment explanation
Indices: 1214595--1214632 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
1214585 ATCCTTATTT
1214595 AAATAAAATACAATAGTA
1 AAATAAAATACAATAGTA
1214613 AAATAAAATA-AA-AGTA
1 AAATAAAATACAATAGTA
1214629 AAAT
1 AAAT
1214633 CCATATAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.21
Consensus pattern (18 bp):
AAATAAAATACAATAGTA
Found at i:1220661 original size:18 final size:19
Alignment explanation
Indices: 1220632--1220675 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
1220622 CTTAGTAGAC
*
1220632 TGAAAAAGAAATTGAAAAGA
1 TGAAAAAGAAATAG-AAAGA
1220652 T-AAAAA-AAATAGAAAGA
1 TGAAAAAGAAATAGAAAGA
1220669 TGAAAAA
1 TGAAAAA
1220676 TATTTTTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 6 0.27
18 10 0.45
19 5 0.23
20 1 0.05
ACGTcount: A:0.70, C:0.00, G:0.16, T:0.14
Consensus pattern (19 bp):
TGAAAAAGAAATAGAAAGA
Found at i:1226996 original size:3 final size:3
Alignment explanation
Indices: 1226988--1227020 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
1226978 TGGCTGATAT
*
1226988 TGA TGA TGA TGA TGC TGA TGA TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA
1227021 ACCATTTCAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.30, C:0.03, G:0.33, T:0.33
Consensus pattern (3 bp):
TGA
Found at i:1229881 original size:17 final size:19
Alignment explanation
Indices: 1229854--1229891 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
1229844 AGTTTTAATT
1229854 TTTTTTAATC-ATTTCAAG
1 TTTTTTAATCAATTTCAAG
1229872 TTTTTT-ATCAATTTCAAG
1 TTTTTTAATCAATTTCAAG
1229890 TT
1 TT
1229892 CGAATCATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 3 0.16
18 16 0.84
ACGTcount: A:0.26, C:0.11, G:0.05, T:0.58
Consensus pattern (19 bp):
TTTTTTAATCAATTTCAAG
Found at i:1234260 original size:3 final size:3
Alignment explanation
Indices: 1234252--1234285 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
1234242 CCACAACACA
*
1234252 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1234286 TTCAATGACC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:1234499 original size:21 final size:21
Alignment explanation
Indices: 1234475--1234516 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
1234465 ACAAAATAAC
* *
1234475 AAATCAGTCCTTATATGTTAG
1 AAATCAGTCCCTATACGTTAG
1234496 AAATCAGTCCCTATACGTTAG
1 AAATCAGTCCCTATACGTTAG
1234517 CATGAGTTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (21 bp):
AAATCAGTCCCTATACGTTAG
Found at i:1237435 original size:31 final size:32
Alignment explanation
Indices: 1237397--1237472 Score: 100
Period size: 32 Copynumber: 2.4 Consensus size: 32
1237387 TTAATATAAC
*
1237397 ATTTGGTACCTGAACTTGAC-AATTTTTCCTA
1 ATTTGGTACCTAAACTTGACTAATTTTTCCTA
**
1237428 ATTTGGTACCTAAACTTGACTCTTTTTTCCTA
1 ATTTGGTACCTAAACTTGACTAATTTTTCCTA
**
1237460 ATTTTATACCTAA
1 ATTTGGTACCTAA
1237473 TCTTTTTCTT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
31 19 0.49
32 20 0.51
ACGTcount: A:0.26, C:0.20, G:0.09, T:0.45
Consensus pattern (32 bp):
ATTTGGTACCTAAACTTGACTAATTTTTCCTA
Found at i:1243842 original size:58 final size:58
Alignment explanation
Indices: 1243777--1243900 Score: 248
Period size: 58 Copynumber: 2.1 Consensus size: 58
1243767 GTCATCTTAC
1243777 TTGAAAATAATGTGAATCTTTGAAATTTGGTCTTACTAGTAGATGAATGAACTTATAT
1 TTGAAAATAATGTGAATCTTTGAAATTTGGTCTTACTAGTAGATGAATGAACTTATAT
1243835 TTGAAAATAATGTGAATCTTTGAAATTTGGTCTTACTAGTAGATGAATGAACTTATAT
1 TTGAAAATAATGTGAATCTTTGAAATTTGGTCTTACTAGTAGATGAATGAACTTATAT
1243893 TTGAAAAT
1 TTGAAAAT
1243901 GTGGCAATGA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 66 1.00
ACGTcount: A:0.37, C:0.06, G:0.17, T:0.40
Consensus pattern (58 bp):
TTGAAAATAATGTGAATCTTTGAAATTTGGTCTTACTAGTAGATGAATGAACTTATAT
Done.