Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 33 of 145
Found at i:10705622 original size:20 final size:20
Alignment explanation
Indices: 10705581--10705622 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
10705571 GCTTGAAGAG
* * *
10705581 AAATTAATTTTTTTTGATAT
1 AAATTAATTTGTTTTAAAAT
10705601 AAATTAATTTGTTTTAAAAT
1 AAATTAATTTGTTTTAAAAT
10705621 AA
1 AA
10705623 TTATGGGTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (20 bp):
AAATTAATTTGTTTTAAAAT
Found at i:10710518 original size:174 final size:174
Alignment explanation
Indices: 10710215--10710891 Score: 881
Period size: 174 Copynumber: 3.9 Consensus size: 174
10710205 CCTCAAGGGT
* * * * *
10710215 CCCCATGGCATATTTTGATTCAGGAAATAGTGATTCCGATGAAGATCTTCCTAAAACAGGTTCAA
1 CCCCATGCCATATTTTGGTCCAGGAAATAGTGATTCTGATGAAGATCTTCCTAAAACAAGTTCAA
* * * * * * * * * *
10710280 AGGTTCATACAAGCATTGGTTTTTCTCACAAGACAACTGCCTCCCCGAATTCAGGAAAAGGTTCC
66 AGGCTCATTCAAGCACTAGTTTTTCTCATAAGACAACTGCCTCTCCAAATGCACGAAGAGGTTCC
* * * * * *
10710345 ACTGTTAAAGCTGCAGTTTCCTCCGAATCGACGCTAGTTTCTAA
131 ACTCTTAAAACTACAGTTTCCTCTGAATCGAAGCTAGTTTCTGA
*
10710389 CCCCATACCATATTTTGGTCCAGGAAATAGTGATTCTGATGAAGATCTTCCTAAAACAAGTTCAA
1 CCCCATGCCATATTTTGGTCCAGGAAATAGTGATTCTGATGAAGATCTTCCTAAAACAAGTTCAA
* * * *
10710454 AGGCTCGTTCAAGCACAATTTTTTCTCATAGGACAACTGCCTCTCCAAATGCACGAAGAGGTTCC
66 AGGCTCATTCAAGCACTAGTTTTTCTCATAAGACAACTGCCTCTCCAAATGCACGAAGAGGTTCC
*
10710519 ACTCTTAAAACTACAGTTTCCTCTGAATCGAAGCTAGTTTTTGA
131 ACTCTTAAAACTACAGTTTCCTCTGAATCGAAGCTAGTTTCTGA
**
10710563 CCCCATGCCGCATTTTGGTCCAGGAAATAGTGATTCTGATGAAGATCTTCCTAAAACAAGTTCAA
1 CCCCATGCCATATTTTGGTCCAGGAAATAGTGATTCTGATGAAGATCTTCCTAAAACAAGTTCAA
* * * * *
10710628 AGGCTCGTTCACGCA-TGATTTTTTCTCATAGGACAACTGCCTCTCCAAATGCAAGAAGAGGTTC
66 AGGCTCATTCAAGCACT-AGTTTTTCTCATAAGACAACTGCCTCTCCAAATGCACGAAGAGGTTC
* *
10710692 CACTCTTAAAACTACAGTTTCCTCTGAATCAAAGGTAGTTTCTGA
130 CACTCTTAAAACTACAGTTTCCTCTGAATCGAAGCTAGTTTCTGA
* * * **
10710737 CCCCATGCCATATTTAGGTCCAGGAAACAGTGGTTCTGATGAAGATCTTCCGGAAACAAGTTCAA
1 CCCCATGCCATATTTTGGTCCAGGAAATAGTGATTCTGATGAAGATCTTCCTAAAACAAGTTCAA
* * * *
10710802 AGACTCATTCAAGCACTGGTTTTTCTCATAAGACAA-TGGACTCTCCTTCAAATTCACGAAGAGG
66 AGGCTCATTCAAGCACTAGTTTTTCTCATAAGACAACT-G-C-CT-CTCCAAATGCACGAAGAGG
*
10710866 TTCCACTCTTAAAACTACAGTGTCCT
127 TTCCACTCTTAAAACTACAGTTTCCT
10710892 TTGAGCCAGC
Statistics
Matches: 444, Mismatches: 53, Indels: 9
0.88 0.10 0.02
Matches are distributed among these distances:
173 1 0.00
174 398 0.90
175 2 0.00
176 2 0.00
177 41 0.09
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (174 bp):
CCCCATGCCATATTTTGGTCCAGGAAATAGTGATTCTGATGAAGATCTTCCTAAAACAAGTTCAA
AGGCTCATTCAAGCACTAGTTTTTCTCATAAGACAACTGCCTCTCCAAATGCACGAAGAGGTTCC
ACTCTTAAAACTACAGTTTCCTCTGAATCGAAGCTAGTTTCTGA
Found at i:10712456 original size:17 final size:18
Alignment explanation
Indices: 10712436--10712499 Score: 51
Period size: 17 Copynumber: 3.4 Consensus size: 18
10712426 ATTTGAATTG
10712436 AATTAAAATT-TTATTTA-
1 AATTAAAATTATT-TTTAT
*
10712453 AATTATAATTATTTTTAT
1 AATTAAAATTATTTTTAT
*
10712471 AATATAAAATAAATATTTTAT
1 AAT-TAAAAT-TAT-TTTTAT
10712492 ATATTAAA
1 A-ATTAAA
10712500 TTAGTGAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
17 13 0.34
18 5 0.13
19 5 0.13
20 2 0.05
21 11 0.29
22 2 0.05
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
AATTAAAATTATTTTTAT
Found at i:10713397 original size:26 final size:26
Alignment explanation
Indices: 10713367--10713420 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
10713357 TCGAAATTTT
*
10713367 TTCAAATCGAGTTG-AGTGAAATGAAA
1 TTCAAATCGAGTTGAAATG-AATGAAA
* *
10713393 TTCAAGTTGAGTTGAAATGAATGAAA
1 TTCAAATCGAGTTGAAATGAATGAAA
10713419 TT
1 TT
10713421 GTTCGAGTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.41, C:0.06, G:0.22, T:0.31
Consensus pattern (26 bp):
TTCAAATCGAGTTGAAATGAATGAAA
Found at i:10720293 original size:105 final size:106
Alignment explanation
Indices: 10720109--10720319 Score: 397
Period size: 105 Copynumber: 2.0 Consensus size: 106
10720099 ACGGATCTAG
*
10720109 ATGGAAAACAGAACTGCCGAAATCAAGACCACTTTTCACATAGAAAATGTGTAAAGCATTCATAA
1 ATGGAAAACAGAACTGCCGAAATCAAGACCACTTATCACATAGAAAATGTGTAAAGCATTCATAA
10720174 ATTCGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCAC
66 ATTCGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCAC
10720215 ATGGAAAACAGAACTGCCGAAATCAAGACCA-TTATCACATAGAAAATGTGTAAAGCATTCATAA
1 ATGGAAAACAGAACTGCCGAAATCAAGACCACTTATCACATAGAAAATGTGTAAAGCATTCATAA
*
10720279 ATTCGGGGCGTTCCGAGAATCGAACTCGGGACCTCTCGCAC
66 ATTCGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCAC
10720320 CCAAAGCGAG
Statistics
Matches: 103, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
105 72 0.70
106 31 0.30
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.20
Consensus pattern (106 bp):
ATGGAAAACAGAACTGCCGAAATCAAGACCACTTATCACATAGAAAATGTGTAAAGCATTCATAA
ATTCGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCAC
Found at i:10728000 original size:22 final size:23
Alignment explanation
Indices: 10727961--10728006 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 23
10727951 AATTTAAAAA
10727961 TTTAAAAATATATAAAAATTATT
1 TTTAAAAATATATAAAAATTATT
10727984 TTTAAAAATCAT-T-AAAATTATT
1 TTTAAAAAT-ATATAAAAATTATT
10728006 T
1 T
10728007 AAAAAGTACA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 10 0.45
23 10 0.45
24 2 0.09
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
TTTAAAAATATATAAAAATTATT
Found at i:10731098 original size:27 final size:26
Alignment explanation
Indices: 10731039--10731091 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10731029 TATAGTTCGT
10731039 CAGGACACTAAACACGAGTAGTCCAC
1 CAGGACACTAAACACGAGTAGTCCAC
* * *
10731065 CAAGACACTAAATACAGGGTAGTCCAC
1 CAGGACACTAAACAC-GAGTAGTCCAC
10731092 TGGGACAATC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 13 0.57
27 10 0.43
ACGTcount: A:0.40, C:0.28, G:0.19, T:0.13
Consensus pattern (26 bp):
CAGGACACTAAACACGAGTAGTCCAC
Found at i:10731923 original size:17 final size:17
Alignment explanation
Indices: 10731901--10731934 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
10731891 TCCTTTCTCA
10731901 TAGGCCTTATGAATAGG
1 TAGGCCTTATGAATAGG
*
10731918 TAGGCCTTATGAGTAGG
1 TAGGCCTTATGAATAGG
10731935 ATAACTGTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.12, G:0.32, T:0.29
Consensus pattern (17 bp):
TAGGCCTTATGAATAGG
Found at i:10742170 original size:9 final size:9
Alignment explanation
Indices: 10742153--10742189 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
10742143 TGAGTTTTCG
10742153 AATTCGAAT
1 AATTCGAAT
*
10742162 AACTCGAAT
1 AATTCGAAT
10742171 AATTCGAAT
1 AATTCGAAT
10742180 AATTCGAAT
1 AATTCGAAT
10742189 A
1 A
10742190 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:10742531 original size:17 final size:18
Alignment explanation
Indices: 10742511--10742553 Score: 56
Period size: 17 Copynumber: 2.5 Consensus size: 18
10742501 CACATTTTAT
10742511 ATTATTTATGT-TATTGA
1 ATTATTTATGTATATTGA
10742528 ATTATTTA-GTCATATTGA
1 ATTATTTATGT-ATATTGA
10742546 A-TATTTAT
1 ATTATTTAT
10742554 ATTAAAATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 2 0.09
17 14 0.61
18 7 0.30
ACGTcount: A:0.33, C:0.02, G:0.09, T:0.56
Consensus pattern (18 bp):
ATTATTTATGTATATTGA
Found at i:10743012 original size:5 final size:5
Alignment explanation
Indices: 10743002--10743027 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
10742992 CTCAAAAATT
10743002 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
10743028 CGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:10743310 original size:23 final size:21
Alignment explanation
Indices: 10743283--10743331 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
10743273 ATATATATAT
10743283 TATATAATAAAACTCACACATAA
1 TATATAATAAAAC-CACAC-TAA
* *
10743306 TATAT-ATACAACCACACTCA
1 TATATAATAAAACCACACTAA
10743326 TATATA
1 TATATA
10743332 TATATTATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 7 0.30
21 5 0.22
22 6 0.26
23 5 0.22
ACGTcount: A:0.51, C:0.20, G:0.00, T:0.29
Consensus pattern (21 bp):
TATATAATAAAACCACACTAA
Found at i:10743330 original size:2 final size:2
Alignment explanation
Indices: 10743325--10743384 Score: 70
Period size: 2 Copynumber: 31.0 Consensus size: 2
10743315 AACCACACTC
* * **
10743325 AT AT AT AT AT AT -T AT AT AT AT A- AC AC GC AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
10743365 AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT
10743385 TACTAACTCC
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
1 2 0.04
2 51 0.96
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (2 bp):
AT
Found at i:10743476 original size:55 final size:55
Alignment explanation
Indices: 10743369--10743496 Score: 166
Period size: 55 Copynumber: 2.3 Consensus size: 55
10743359 ATATATATAT
* * * *
10743369 ATATATATATATATATTACTAACTCCCCCATTTATATATTATAAATGCAACACGC
1 ATATATATATGTATATTACCAACTCCCCCATTTATATATTATAAATACAACACAC
* * *
10743424 ATATATATATGTATATTGCCAACTCCCCCATTTATATATTATATATATAACACAC
1 ATATATATATGTATATTACCAACTCCCCCATTTATATATTATAAATACAACACAC
10743479 ACTAATATATATTGTATA
1 A-T-ATATATA-TGTATA
10743497 CAAAATAAAG
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
55 49 0.78
56 1 0.02
57 7 0.11
58 6 0.10
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (55 bp):
ATATATATATGTATATTACCAACTCCCCCATTTATATATTATAAATACAACACAC
Found at i:10747160 original size:16 final size:16
Alignment explanation
Indices: 10747139--10747208 Score: 86
Period size: 16 Copynumber: 4.4 Consensus size: 16
10747129 TGAATTACTG
10747139 ATTACAACTCTATTCC
1 ATTACAACTCTATTCC
* *
10747155 ATTACAACTTTATTTC
1 ATTACAACTCTATTCC
*
10747171 ATTACAACTCTATTCA
1 ATTACAACTCTATTCC
* * *
10747187 ATTACAGCCCTATTCT
1 ATTACAACTCTATTCC
10747203 ATTACA
1 ATTACA
10747209 GTGAACCAAA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.33, C:0.26, G:0.01, T:0.40
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:10748210 original size:5 final size:5
Alignment explanation
Indices: 10748200--10748231 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
10748190 TGCTTTCCTT
10748200 CAATC CAATC CAATC CAATC CAATC CAATC CA
1 CAATC CAATC CAATC CAATC CAATC CAATC CA
10748232 GGTCTCTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.41, G:0.00, T:0.19
Consensus pattern (5 bp):
CAATC
Found at i:10752949 original size:56 final size:56
Alignment explanation
Indices: 10752863--10752969 Score: 180
Period size: 56 Copynumber: 1.9 Consensus size: 56
10752853 AGCATCCACA
* *
10752863 TAAAGCAGGTAGAAGAAACAATTAGAAAGACTTGCATACCTTTCATGCTCAACATT
1 TAAAGCAGGTAGAAGAAACAATAAAAAAGACTTGCATACCTTTCATGCTCAACATT
10752919 TAAAGCAGGTAGAA-AAACTAATAAAAAAGACTTGCATACCTTTCATGCTCA
1 TAAAGCAGGTAGAAGAAAC-AATAAAAAAGACTTGCATACCTTTCATGCTCA
10752970 GAAGCCAAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
55 4 0.08
56 44 0.92
ACGTcount: A:0.43, C:0.18, G:0.15, T:0.24
Consensus pattern (56 bp):
TAAAGCAGGTAGAAGAAACAATAAAAAAGACTTGCATACCTTTCATGCTCAACATT
Found at i:10759219 original size:19 final size:19
Alignment explanation
Indices: 10759195--10759286 Score: 148
Period size: 19 Copynumber: 4.8 Consensus size: 19
10759185 AATTTTTGAG
10759195 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
10759214 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
10759233 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
10759252 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
10759271 GATCTGCAATCTTAGA
1 GATATGCAATCTTAGA
10759287 ATATATGATT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 66 1.00
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:10760957 original size:98 final size:98
Alignment explanation
Indices: 10760841--10761035 Score: 336
Period size: 98 Copynumber: 2.0 Consensus size: 98
10760831 TTTAAAATAA
* * *
10760841 TAAAGGAAATATTTCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
* *
10760906 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATATTAGATAAGTGGATGTTCTTTTAAAG
*
10760939 TAAAGGAAATATTCCGAGTTTGGGATTCTAGAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
10761004 TTAAATATTAGATAAGTGGATGTTCTTTTAAA
66 TTAAATATTAGATAAGTGGATGTTCTTTTAAA
10761036 ATATTATTGT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 91 1.00
ACGTcount: A:0.29, C:0.09, G:0.24, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATATTAGATAAGTGGATGTTCTTTTAAAG
Found at i:10766706 original size:132 final size:132
Alignment explanation
Indices: 10766239--10767125 Score: 1215
Period size: 132 Copynumber: 6.7 Consensus size: 132
10766229 TTGACAGCGA
*
10766239 AGCAGATCGAAGATGACGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
* ** ** * *
10766304 TCTACTTCCCTGGGCAGCAGTGGAATAGATTAAAGATAGCAGATCTTGCCTTCCT--GCATTGAC
66 TCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA--G-T
* *
10766367 AGCGA
128 AGTGG
*
10766372 AGCAGATCGAAAATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
* ** ** * *
10766437 TCTACTTCCCTGGGCAGCAGTGGAATAGATTAAAGATAGCAGATCTTGCCTTCCT--GCATTGAC
66 TCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCA--G-T
* *
10766500 AGCGA
128 AGTGG
* * * *
10766505 AGCTGATCGAAGATGGCGGATTTTACCTCCCAGTGGTTATAGTGGAGTACATTGAAACCAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
*
10766570 TCTACTTCCCTGGGCAGCAGTGGAATATATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
10766635 GG
131 GG
* * * *
10766637 AGCAGATCGAAGATGGCAGATTTTACCTCCCTGTGGTCATAGTAGAGTACATTGAAGCCAATAAC
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
*
10766702 TCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCATATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
10766767 GG
131 GG
* *
10766769 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAATGGAGTACATTGAAGCCAATAAC
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
*
10766834 TCTACTTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
10766899 GG
131 GG
* * * * * *
10766901 AGCAGATTGAAGATAGCGGATTTTACCTCCCTGTGGTTACAGTGCAGTACATTGAAGCTAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
* ** *
10766966 TCTACTTCCCTAGGCAATAGTGGAATAGTTTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
66 TCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
10767031 GG
131 GG
* * * * * * *
10767033 AGTAAATCGAAGATGGTGGATTTTACCTCCCTGTGGTTACAGTGCAGTACATTGAAGCTAGTAAT
1 AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
* **
10767098 TCTACTTCCCTAGGCAATAGTGGAATAG
66 TCTACTTCCCTGGGCAGCAGTGGAATAG
10767126 NNNNNNNNNN
Statistics
Matches: 703, Mismatches: 49, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
132 460 0.65
133 240 0.34
135 3 0.00
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (132 bp):
AGCAGATCGAAGATGGCGGATTTTACCTCCCTGTGGTTATAGTGGAGTACATTGAAGCCAATAAT
TCTACTTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGT
GG
Found at i:10766888 original size:44 final size:44
Alignment explanation
Indices: 10766576--10767046 Score: 153
Period size: 44 Copynumber: 10.7 Consensus size: 44
10766566 TAATTCTACT
** * *
10766576 TCCCTGGGCAGCAGTGGAATATATTGAAGATTTCAGATCTTATC
1 TCCCTGGGCAATAGTGGAGTAGATTGAAGATTTCAGATCTTATC
** * * * ** * *
10766620 TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAGATTTTACC
1 TCCCTGGGCAATAGTGGAGTAGATTGAAGATTTCAGATCTTATC
* * *
10766664 TCCCTGTGGTC-ATAGTAGAGTACATTGAAG---CCA-ATAACTCTA-C
1 TCCCTG-GG-CAATAGTGGAGTAGATTGAAGATTTCAGAT--CT-TATC
** * *
10766707 TTCCCTGGGCAGCAGTGGAATAGATTGAAGATTTCATATCTTATC
1 -TCCCTGGGCAATAGTGGAGTAGATTGAAGATTTCAGATCTTATC
** * * * ** * * *
10766752 TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGGATTTTACC
1 TCCCTGGGCAATAGTGGAGTAGATTGAAGATTTCAGATCTTATC
** * * *
10766796 TCCCTGTGGTTATAATGGAGTACATTGAAG---CCA-ATAACTCTA-C
1 TCCCTG-GGCAATAGTGGAGTAGATTGAAGATTTCAGAT--CT-TATC
* *
10766839 TTCCCTGGGCAACAGTGGAATAGATTGAAGATTTCAGATCTTATC
1 -TCCCTGGGCAATAGTGGAGTAGATTGAAGATTTCAGATCTTATC
** * * ** * * *
10766884 TCCCTAAGCAGTAGTGGAGCAGATTGAAGATAGCGGATTTTACC
1 TCCCTGGGCAATAGTGGAGTAGATTGAAGATTTCAGATCTTATC
** * * * * *
10766928 TCCCTGTGGTTACAGTGCAGTACATTGAAGCTAGT-A-AT-TCTA-C
1 TCCCTG-GGCAATAGTGGAGTAGATTGAAGAT-TTCAGATCT-TATC
* * *
10766971 TTCCCTAGGCAATAGTGGAATAGTTTGAAGATTTCAGATCTTATC
1 -TCCCTGGGCAATAGTGGAGTAGATTGAAGATTTCAGATCTTATC
** * * *
10767016 TCCCTAAGCAGTAGTGGAGTAAATCGAAGAT
1 TCCCTGGGCAATAGTGGAGTAGATTGAAGAT
10767047 GGTGGATTTT
Statistics
Matches: 300, Mismatches: 97, Indels: 60
0.66 0.21 0.13
Matches are distributed among these distances:
41 4 0.01
42 5 0.02
43 57 0.19
44 171 0.57
45 54 0.18
46 5 0.02
47 4 0.01
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (44 bp):
TCCCTGGGCAATAGTGGAGTAGATTGAAGATTTCAGATCTTATC
Found at i:10772044 original size:11 final size:11
Alignment explanation
Indices: 10772028--10772057 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
10772018 CAGGAAAGAA
10772028 TCCACCTAGAC
1 TCCACCTAGAC
10772039 TCCACCTAGAC
1 TCCACCTAGAC
10772050 TCCACCTA
1 TCCACCTA
10772058 TTATTCTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.27, C:0.47, G:0.07, T:0.20
Consensus pattern (11 bp):
TCCACCTAGAC
Found at i:10785120 original size:63 final size:63
Alignment explanation
Indices: 10785048--10785175 Score: 256
Period size: 63 Copynumber: 2.0 Consensus size: 63
10785038 ACTACAATAT
10785048 TTAATTTAAATAAGGATTTAGGTCACTTAATTCTAACAAGTTTGATTCTTTTGCTGAGTTTAA
1 TTAATTTAAATAAGGATTTAGGTCACTTAATTCTAACAAGTTTGATTCTTTTGCTGAGTTTAA
10785111 TTAATTTAAATAAGGATTTAGGTCACTTAATTCTAACAAGTTTGATTCTTTTGCTGAGTTTAA
1 TTAATTTAAATAAGGATTTAGGTCACTTAATTCTAACAAGTTTGATTCTTTTGCTGAGTTTAA
10785174 TT
1 TT
10785176 TTCTTGGGAC
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 65 1.00
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.45
Consensus pattern (63 bp):
TTAATTTAAATAAGGATTTAGGTCACTTAATTCTAACAAGTTTGATTCTTTTGCTGAGTTTAA
Found at i:10790472 original size:13 final size:12
Alignment explanation
Indices: 10790447--10790485 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 12
10790437 AGCTTCTCTA
10790447 TCTTTCATCTTCT
1 TCTTTC-TCTTCT
10790460 TCTCTTCTCTTCT
1 TCT-TTCTCTTCT
10790473 TCTTTCTCCTTCT
1 TCTTTCT-CTTCT
10790486 CCCTTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.17
13 17 0.71
14 3 0.12
ACGTcount: A:0.03, C:0.36, G:0.00, T:0.62
Consensus pattern (12 bp):
TCTTTCTCTTCT
Found at i:10797263 original size:21 final size:21
Alignment explanation
Indices: 10797238--10797281 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
10797228 GGTTAGATAC
10797238 ATTTAAGATTTAGTA-TTTAAT
1 ATTTAAGATTTAG-AGTTTAAT
*
10797259 ATTTAAGGTTTAGAGTTTAAT
1 ATTTAAGATTTAGAGTTTAAT
10797280 AT
1 AT
10797282 AATTAAGGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 1 0.05
21 20 0.95
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (21 bp):
ATTTAAGATTTAGAGTTTAAT
Found at i:10797300 original size:23 final size:21
Alignment explanation
Indices: 10797252--10797300 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 21
10797242 AAGATTTAGT
* *
10797252 ATTTAATATTTAAGGTTTAGA
1 ATTTAATATTTAAGGCTTAAA
*
10797273 GTTTAATATAATTAAGGCTTAAA
1 ATTTAATAT--TTAAGGCTTAAA
10797296 ATTTA
1 ATTTA
10797301 GGGTTTTTAA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 8 0.36
23 14 0.64
ACGTcount: A:0.41, C:0.02, G:0.12, T:0.45
Consensus pattern (21 bp):
ATTTAATATTTAAGGCTTAAA
Found at i:10800220 original size:27 final size:27
Alignment explanation
Indices: 10800190--10800346 Score: 93
Period size: 27 Copynumber: 5.9 Consensus size: 27
10800180 CCATTGTAGG
*
10800190 ATTCGCCACAAAGGCCATTCTTTCATA
1 ATTCGCCACAAAGGCTATTCTTTCATA
* * * **
10800217 ATTCACCACAGAGGCGATTCTTGT-AGG
1 ATTCGCCACAAAGGCTATTCTT-TCATA
* *
10800244 ATT-GCCTCAAAGACTATTCTTTCATA
1 ATTCGCCACAAAGGCTATTCTTTCATA
*** *** *
10800270 ATTTTTCACAAATTTTATTCTTTCGTA
1 ATTCGCCACAAAGGCTATTCTTTCATA
* * *
10800297 ATACGCCACAAAGGCTATTCTTTTAGA
1 ATTCGCCACAAAGGCTATTCTTTCATA
* * * *
10800324 CTTTGCCAAAAAGGTTATTCTTT
1 ATTCGCCACAAAGGCTATTCTTT
10800347 TAGGCTTCGC
Statistics
Matches: 93, Mismatches: 34, Indels: 6
0.70 0.26 0.05
Matches are distributed among these distances:
25 1 0.01
26 17 0.18
27 74 0.80
28 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.13, T:0.37
Consensus pattern (27 bp):
ATTCGCCACAAAGGCTATTCTTTCATA
Found at i:10800347 original size:27 final size:27
Alignment explanation
Indices: 10800300--10800374 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
10800290 TTTCGTAATA
*
10800300 CGCCACAAAGGCTATTCTTTTAGACTT
1 CGCCAAAAAGGCTATTCTTTTAGACTT
* * *
10800327 TGCCAAAAAGGTTATTCTTTTAGGCTT
1 CGCCAAAAAGGCTATTCTTTTAGACTT
** *
10800354 CGCCATGAAGGCTACTCTTTT
1 CGCCAAAAAGGCTATTCTTTT
10800375 TTGACATGTT
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (27 bp):
CGCCAAAAAGGCTATTCTTTTAGACTT
Found at i:10802696 original size:101 final size:102
Alignment explanation
Indices: 10802576--10802760 Score: 293
Period size: 102 Copynumber: 1.8 Consensus size: 102
10802566 AAAGTGATGG
* *
10802576 TCACGTGTGTAGTGCTATGTGCAGGCTACTACGTGTA-CCAA-AATGATAGGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCCAATAATGAT-GGTCACATGTGTAGT
*
10802639 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
65 ACTATGTGCAAGCTACTATGCGTACCGGATAGCTTCGA
* * *
10802677 TCACGTGTGTGGTACTATGTGCAGGCTACTACGTGTATCGAATAGTGATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCCAATAATGATGGTCACATGTGTAGTA
10802742 CTATGTGCAAGCTACTATG
66 CTATGTGCAAGCTACTATG
10802761 TGAACCGGTA
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
101 35 0.46
102 36 0.47
103 5 0.07
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCCAATAATGATGGTCACATGTGTAGTA
CTATGTGCAAGCTACTATGCGTACCGGATAGCTTCGA
Found at i:10802704 original size:51 final size:50
Alignment explanation
Indices: 10802576--10802760 Score: 169
Period size: 51 Copynumber: 3.7 Consensus size: 50
10802566 AAAGTGATGG
* * * * * *
10802576 TCACGTGTGTAGTGCTATGTGCAGGCTACTACGTGTACC-AA-AATGATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATAGT-AT-GA
* *
10802626 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCT-TCGA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATAG-TAT-GA
* * * * * *
10802677 TCACGTGTGTGGTACTATGTGCAGGCTACTACGTGTATCGAATAGTGATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATAGT-ATGA
*
10802728 TCACATGTGTAGTACTATGTGCAAGCTACTATG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATG
10802761 TGAACCGGTA
Statistics
Matches: 109, Mismatches: 21, Indels: 9
0.78 0.15 0.06
Matches are distributed among these distances:
50 35 0.32
51 71 0.65
52 2 0.02
53 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (50 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGAATAGTATGA
Found at i:10806894 original size:89 final size:90
Alignment explanation
Indices: 10806744--10806934 Score: 354
Period size: 89 Copynumber: 2.2 Consensus size: 90
10806734 TTTAGATCTG
10806744 TAAATT-TT-TCCTAAAACTAGACTCATATATATTTTTACCATAATTTTTTTGAAATTTTTGGTT
1 TAAATTCTTCTCCTAAAACTAGACTCATATATATTTTTACCATAATTTTTTTGAAATTTTTGGTT
10806807 TGGCCAATTAGTACATTTTATTAGT
66 TGGCCAATTAGTACATTTTATTAGT
10806832 TAAATTCTTCTCCTAAAACT-GACTCATATATATTTTTACCATAATTTTTTTGAAATTTTTGGTT
1 TAAATTCTTCTCCTAAAACTAGACTCATATATATTTTTACCATAATTTTTTTGAAATTTTTGGTT
10806896 TGGCCAATTAGTACATTTTATTAGT
66 TGGCCAATTAGTACATTTTATTAGT
10806921 TAAATTCTTC-CCTA
1 TAAATTCTTCTCCTA
10806935 TTTCACTGAT
Statistics
Matches: 101, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
88 10 0.10
89 81 0.80
90 10 0.10
ACGTcount: A:0.30, C:0.14, G:0.08, T:0.48
Consensus pattern (90 bp):
TAAATTCTTCTCCTAAAACTAGACTCATATATATTTTTACCATAATTTTTTTGAAATTTTTGGTT
TGGCCAATTAGTACATTTTATTAGT
Found at i:10811067 original size:32 final size:32
Alignment explanation
Indices: 10811026--10811086 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
10811016 ATGTTAATGA
10811026 GTGATGATGCAATATAATTAACAATTTCAATT
1 GTGATGATGCAATATAATTAACAATTTCAATT
*
10811058 GTGATGATGCAATATAATTAGCAATTTCA
1 GTGATGATGCAATATAATTAACAATTTCA
10811087 GTTTAAAAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.39, C:0.10, G:0.15, T:0.36
Consensus pattern (32 bp):
GTGATGATGCAATATAATTAACAATTTCAATT
Found at i:10816896 original size:15 final size:15
Alignment explanation
Indices: 10816876--10816918 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
10816866 CATACATTTG
10816876 TTGTTCTGTTCTGCT
1 TTGTTCTGTTCTGCT
*
10816891 TTGTTCTATTCTGCT
1 TTGTTCTGTTCTGCT
*
10816906 CTGCTT-TGTTCTG
1 TTG-TTCTGTTCTG
10816919 TTCTATTCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
15 22 0.92
16 2 0.08
ACGTcount: A:0.02, C:0.21, G:0.19, T:0.58
Consensus pattern (15 bp):
TTGTTCTGTTCTGCT
Found at i:10816928 original size:20 final size:20
Alignment explanation
Indices: 10816877--10816928 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
10816867 ATACATTTGT
10816877 TGTTCTGTTCTGCTTTGTTC
1 TGTTCTGTTCTGCTTTGTTC
* *
10816897 TATTCTGCTCTGCTTTGTTC
1 TGTTCTGTTCTGCTTTGTTC
*
10816917 TGTTCTATTCTG
1 TGTTCTGTTCTG
10816929 TTGTACTACC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.04, C:0.21, G:0.17, T:0.58
Consensus pattern (20 bp):
TGTTCTGTTCTGCTTTGTTC
Found at i:10828346 original size:64 final size:64
Alignment explanation
Indices: 10828221--10828347 Score: 146
Period size: 64 Copynumber: 2.0 Consensus size: 64
10828211 CGAGCATCCC
* * * * * * * **
10828221 GATCGGTATTGATATTGCATGTGTTGCGGGCATACCACAACTCTTTGTGAGCTTCTTGTTATAT
1 GATCGGTATTAATACTGCATATATTGCAGGCATACCACAACTCTTTATGAGCATCCCGTTATAT
* * *
10828285 GATCGGTATTAATCCTGCATATATTGCAGGCATACCTCAACTCTTTATGATCATCCCGTTATA
1 GATCGGTATTAATACTGCATATATTGCAGGCATACCACAACTCTTTATGAGCATCCCGTTATA
10828348 AGGATCTTAA
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
64 51 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (64 bp):
GATCGGTATTAATACTGCATATATTGCAGGCATACCACAACTCTTTATGAGCATCCCGTTATAT
Found at i:10828470 original size:24 final size:25
Alignment explanation
Indices: 10828441--10828540 Score: 69
Period size: 25 Copynumber: 4.0 Consensus size: 25
10828431 GAGTTACCTG
*
10828441 TTAAGCTCACATGAGCTTTCTGTT-
1 TTAAGCTCACATGAGCTTCCTGTTA
***
10828465 TTAAGCTTTTATGAGCTTCCTGTTA
1 TTAAGCTCACATGAGCTTCCTGTTA
* ** * *
10828490 TTAAGCCCGGATAAGCTTCCCGTTA
1 TTAAGCTCACATGAGCTTCCTGTTA
* * *
10828515 -CATGGATCACATGAGCTTCCTGTTA
1 TTA-AGCTCACATGAGCTTCCTGTTA
10828540 T
1 T
10828541 ATGGCTCGAG
Statistics
Matches: 55, Mismatches: 18, Indels: 4
0.71 0.23 0.05
Matches are distributed among these distances:
24 21 0.38
25 34 0.62
ACGTcount: A:0.22, C:0.22, G:0.18, T:0.38
Consensus pattern (25 bp):
TTAAGCTCACATGAGCTTCCTGTTA
Found at i:10829533 original size:42 final size:42
Alignment explanation
Indices: 10829487--10829575 Score: 106
Period size: 42 Copynumber: 2.1 Consensus size: 42
10829477 ACGGGCAGAG
* *
10829487 ACACGTGCATGTCCCTCAGCCGTGTGTCACACACGGCCATGC
1 ACACGAGCATGTCCCTCAGCCGTGTGTCACACACGACCATGC
** ** * *
10829529 ACACGAGTGTGTGTCTCAGTCGTGTGTGACACACGACCATGC
1 ACACGAGCATGTCCCTCAGCCGTGTGTCACACACGACCATGC
10829571 ACACG
1 ACACG
10829576 GGTGTGTGGT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.21, C:0.33, G:0.26, T:0.20
Consensus pattern (42 bp):
ACACGAGCATGTCCCTCAGCCGTGTGTCACACACGACCATGC
Found at i:10829597 original size:42 final size:42
Alignment explanation
Indices: 10829501--10829583 Score: 130
Period size: 42 Copynumber: 2.0 Consensus size: 42
10829491 GTGCATGTCC
* *
10829501 CTCAGCCGTGTGTCACACACGGCCATGCACACGAGTGTGTGT
1 CTCAGTCGTGTGTCACACACGACCATGCACACGAGTGTGTGT
* *
10829543 CTCAGTCGTGTGTGACACACGACCATGCACACGGGTGTGTG
1 CTCAGTCGTGTGTCACACACGACCATGCACACGAGTGTGTG
10829584 GTTTGGTCGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (42 bp):
CTCAGTCGTGTGTCACACACGACCATGCACACGAGTGTGTGT
Found at i:10833780 original size:14 final size:14
Alignment explanation
Indices: 10833763--10833793 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
10833753 ATCTATTAAG
10833763 TCATTTCTATCTAT
1 TCATTTCTATCTAT
*
10833777 TCATTTCTTTCTAT
1 TCATTTCTATCTAT
10833791 TCA
1 TCA
10833794 ATCTTCATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.23, G:0.00, T:0.58
Consensus pattern (14 bp):
TCATTTCTATCTAT
Found at i:10834078 original size:19 final size:19
Alignment explanation
Indices: 10834034--10834078 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
10834024 AATTTGGCAC
*
10834034 CATAGTGCATATTGACACA
1 CATAGTGCATACTGACACA
*
10834053 CGA-AGTGCATACTGATACA
1 C-ATAGTGCATACTGACACA
10834072 CATAGTG
1 CATAGTG
10834079 AATCATTGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 1 0.05
19 20 0.91
20 1 0.05
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (19 bp):
CATAGTGCATACTGACACA
Found at i:10834614 original size:31 final size:31
Alignment explanation
Indices: 10834576--10834636 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
10834566 TACAAATTGA
10834576 GATTGTTCGCTACTTGTCAGCAGGTCTCACT
1 GATTGTTCGCTACTTGTCAGCAGGTCTCACT
10834607 GATTGTTCGCTACTTGTCAGCAGGTCTCAC
1 GATTGTTCGCTACTTGTCAGCAGGTCTCAC
10834637 CTTACCCTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.16, C:0.26, G:0.23, T:0.34
Consensus pattern (31 bp):
GATTGTTCGCTACTTGTCAGCAGGTCTCACT
Found at i:10837917 original size:29 final size:31
Alignment explanation
Indices: 10837853--10837909 Score: 91
Period size: 29 Copynumber: 1.9 Consensus size: 31
10837843 TGGGATGGAG
*
10837853 AAAAAGTATAAACATATTGGGTCATTTACGT
1 AAAAAGTATAAACATATTGGGCCATTTACGT
10837884 AAAAAGTA-AAA-ATATTGGGCCATTTA
1 AAAAAGTATAAACATATTGGGCCATTTA
10837910 TTAGAAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 14 0.56
30 3 0.12
31 8 0.32
ACGTcount: A:0.46, C:0.09, G:0.16, T:0.30
Consensus pattern (31 bp):
AAAAAGTATAAACATATTGGGCCATTTACGT
Found at i:10838086 original size:38 final size:39
Alignment explanation
Indices: 10838039--10838115 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
10838029 TTGTAACAAA
10838039 AATGTTAATGAGTGA-CTAATTTATAACTTTTCGATAAC
1 AATGTTAATGAGTGATCTAATTTATAACTTTTCGATAAC
* * * * *
10838077 AATGTTAATGGGTGATTTGATTTGTCACTTTTCGATAAC
1 AATGTTAATGAGTGATCTAATTTATAACTTTTCGATAAC
10838116 GTTAGTGACC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
38 14 0.42
39 19 0.58
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (39 bp):
AATGTTAATGAGTGATCTAATTTATAACTTTTCGATAAC
Found at i:10848501 original size:20 final size:19
Alignment explanation
Indices: 10848485--10848532 Score: 62
Period size: 18 Copynumber: 2.5 Consensus size: 19
10848475 AAATATATAA
10848485 ATTTTGAAATTTTTATAAAT
1 ATTTTG-AATTTTTATAAAT
10848505 ATTTTGAATTTTTA-AAAT
1 ATTTTGAATTTTTATAAAT
* *
10848523 TTTTTTAATT
1 ATTTTGAATT
10848533 ATTTTGTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 12 0.46
19 8 0.31
20 6 0.23
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.60
Consensus pattern (19 bp):
ATTTTGAATTTTTATAAAT
Found at i:10848503 original size:18 final size:17
Alignment explanation
Indices: 10848480--10848525 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 17
10848470 GTTAAAAATA
10848480 TATAAATTTTGAAATTTT
1 TATAAATTTTG-AATTTT
10848498 TATAAATATTTTGAATTTT
1 TAT-AA-ATTTTGAATTTT
10848517 TA-AAATTTT
1 TATAAATTTT
10848526 TTTAATTATT
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.19
17 2 0.08
18 3 0.12
19 10 0.38
20 6 0.23
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (17 bp):
TATAAATTTTGAATTTT
Found at i:10848522 original size:28 final size:28
Alignment explanation
Indices: 10848450--10848546 Score: 90
Period size: 28 Copynumber: 3.4 Consensus size: 28
10848440 TTATATGTTT
* *
10848450 TTTTAGAATTTTTAGAATTTGTTAAAAATA
1 TTTT-GAATTTTTAAAATTT-TTATAAATA
* * *
10848480 -TAT-AAATTTTGAAATTTTTATAAATA
1 TTTTGAATTTTTAAAATTTTTATAAATA
* *
10848506 TTTTGAATTTTTAAAATTTTTTTAATTA
1 TTTTGAATTTTTAAAATTTTTATAAATA
10848534 TTTTGTAATTTTT
1 TTTTG-AATTTTT
10848547 GTTGGGGAGA
Statistics
Matches: 54, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
26 8 0.15
27 13 0.24
28 24 0.44
29 9 0.17
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (28 bp):
TTTTGAATTTTTAAAATTTTTATAAATA
Found at i:10851331 original size:24 final size:23
Alignment explanation
Indices: 10851300--10851346 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
10851290 TTAATTATGT
*
10851300 TAAAATTTATTT-TTTTATAAATA
1 TAAAATTT-TTTATGTTATAAATA
10851323 TAAATATTTTTTATGTTATAAATA
1 TAAA-ATTTTTTATGTTATAAATA
10851347 GGTGGACGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (23 bp):
TAAAATTTTTTATGTTATAAATA
Found at i:10859508 original size:9 final size:9
Alignment explanation
Indices: 10859494--10859518 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
10859484 AACCCAATTT
10859494 TTTTCTTTA
1 TTTTCTTTA
10859503 TTTTCTTTA
1 TTTTCTTTA
10859512 TTTTCTT
1 TTTTCTT
10859519 ACATGTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.12, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTCTTTA
Found at i:10860439 original size:109 final size:109
Alignment explanation
Indices: 10860275--10860568 Score: 527
Period size: 109 Copynumber: 2.7 Consensus size: 109
10860265 TTTAAAAGAG
* * *
10860275 TGTTGGGCTGAGTAATCGGGGTAGGGTGCTTGGGTTGTCATTCCACTTCGCGTCAAAAGGGCCAA
1 TGTTGGGCTGAGTAACCGAGGTGGGGTGCTT-GGTTGTCATTCCACTTCGCGTCAAAAGGGCCAA
10860340 TACATTCTTAAA-CACAAATATATATAATATAATAAATTAGGAGTA
65 TACATTCTTAAACCA-AAATATATATAATATAATAAATTAGGAGTA
*
10860385 TGTTGGGTTGAGTAACCGAGGTGGGGTGCTTGGTTGTCATTCCACTTCGCGTCAAAAGGGCCAAT
1 TGTTGGGCTGAGTAACCGAGGTGGGGTGCTTGGTTGTCATTCCACTTCGCGTCAAAAGGGCCAAT
10860450 ACATTCTTAAACCAAAATATATATAATATAATAAATTAGGAGTA
66 ACATTCTTAAACCAAAATATATATAATATAATAAATTAGGAGTA
10860494 TGTTGGGCTGAGTAACCGAGGTGGGGTGCTTGGTTGTCATTCCACTTCGCGTCAAAAGGGCCAAT
1 TGTTGGGCTGAGTAACCGAGGTGGGGTGCTTGGTTGTCATTCCACTTCGCGTCAAAAGGGCCAAT
10860559 ACATTCTTAA
66 ACATTCTTAA
10860569 GCATTAAAAA
Statistics
Matches: 178, Mismatches: 5, Indels: 3
0.96 0.03 0.02
Matches are distributed among these distances:
109 149 0.84
110 29 0.16
ACGTcount: A:0.29, C:0.16, G:0.25, T:0.30
Consensus pattern (109 bp):
TGTTGGGCTGAGTAACCGAGGTGGGGTGCTTGGTTGTCATTCCACTTCGCGTCAAAAGGGCCAAT
ACATTCTTAAACCAAAATATATATAATATAATAAATTAGGAGTA
Found at i:10861031 original size:38 final size:39
Alignment explanation
Indices: 10860971--10861051 Score: 155
Period size: 38 Copynumber: 2.1 Consensus size: 39
10860961 TGATCCTACT
10860971 AATTTGGGCTTTTATGGTTTTTTTATATTGTAGGGACTA
1 AATTTGGGCTTTTATGGTTTTTTTATATTGTAGGGACTA
10861010 AATTTGGGCTTTTATGG-TTTTTTATATTGTAGGGACTA
1 AATTTGGGCTTTTATGGTTTTTTTATATTGTAGGGACTA
10861048 AATT
1 AATT
10861052 GAAGGCAAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 25 0.60
39 17 0.40
ACGTcount: A:0.22, C:0.05, G:0.22, T:0.51
Consensus pattern (39 bp):
AATTTGGGCTTTTATGGTTTTTTTATATTGTAGGGACTA
Found at i:10864448 original size:19 final size:19
Alignment explanation
Indices: 10864426--10864483 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 19
10864416 AAATAAAACA
10864426 AATAATAACAATAATTAAT
1 AATAATAACAATAATTAAT
** *
10864445 AATAATAATGATAATAAAT
1 AATAATAACAATAATTAAT
**
10864464 GCTAAT-ACAA-AATTAAT
1 AATAATAACAATAATTAAT
10864481 AAT
1 AAT
10864484 GATAGCATTA
Statistics
Matches: 29, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
17 7 0.24
18 2 0.07
19 20 0.69
ACGTcount: A:0.60, C:0.05, G:0.03, T:0.31
Consensus pattern (19 bp):
AATAATAACAATAATTAAT
Found at i:10866024 original size:16 final size:15
Alignment explanation
Indices: 10865989--10866028 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
10865979 ATTTTTAATT
*
10865989 AAATAATTAAAATAA
1 AAATAATTAAAACAA
*
10866004 AAATAGTTAAAACATA
1 AAATAATTAAAACA-A
10866020 AAATAATTA
1 AAATAATTA
10866029 GGAAATGATC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (15 bp):
AAATAATTAAAACAA
Found at i:10870715 original size:19 final size:19
Alignment explanation
Indices: 10870691--10870727 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
10870681 GATCATAAAT
10870691 TTATAAAACTTA-TTAAAAC
1 TTATAAAA-TTATTTAAAAC
10870710 TTATAAAATTATTTAAAA
1 TTATAAAATTATTTAAAA
10870728 AATCATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 3 0.18
19 14 0.82
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (19 bp):
TTATAAAATTATTTAAAAC
Found at i:10873179 original size:15 final size:15
Alignment explanation
Indices: 10873155--10873185 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10873145 GTATTGGTTG
*
10873155 AATGCTTGTGTATGA
1 AATGCGTGTGTATGA
10873170 AATGCGTGTGTATGA
1 AATGCGTGTGTATGA
10873185 A
1 A
10873186 TTATATGTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.06, G:0.29, T:0.35
Consensus pattern (15 bp):
AATGCGTGTGTATGA
Found at i:10879958 original size:52 final size:55
Alignment explanation
Indices: 10879880--10879984 Score: 171
Period size: 52 Copynumber: 2.0 Consensus size: 55
10879870 CAAAAAAAAG
*
10879880 TTTTTGAGGTTTGGTGGAAGTAAAAGTTTTGGGGA-AAAGT-AAAAAGAAAAATA
1 TTTTTGAGGTTTGGTAGAAGTAAAAGTTTTGGGGAGAAAGTAAAAAAGAAAAATA
*
10879933 TTTTTGGGGTTTGG-AGAAGTAAAAGTTTTGGGGAGAAAGTAAAAAAGAAAAA
1 TTTTTGAGGTTTGGTAGAAGTAAAAGTTTTGGGGAGAAAGTAAAAAAGAAAAA
10879985 AATTGGGGGT
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
52 19 0.40
53 18 0.38
54 11 0.23
ACGTcount: A:0.42, C:0.00, G:0.30, T:0.29
Consensus pattern (55 bp):
TTTTTGAGGTTTGGTAGAAGTAAAAGTTTTGGGGAGAAAGTAAAAAAGAAAAATA
Found at i:10879994 original size:52 final size:52
Alignment explanation
Indices: 10879887--10880015 Score: 163
Period size: 52 Copynumber: 2.4 Consensus size: 52
10879877 AAGTTTTTGA
* *
10879887 GGTTTGGTGGAAGTAAAAGTTTTGGGGAAAAGTAAAAAGAAAAATATTTTTGG
1 GGTTTGG-GGAAGTAAAAGTTTTGGGGAAAAGTAAAAAGAAAAATATATTGGG
*
10879940 GGTTTGGAGAAGTAAAAGTTTTGGGGAGAAAGTAAAAAAGAAAAA-A-ATTGGG
1 GGTTTGGGGAAGTAAAAGTTTTGGGGA-AAAGT-AAAAAGAAAAATATATTGGG
*
10879992 GGTTTAGGGGGAAGTAAAATTTTT
1 GGTTT--GGGGAAGTAAAAGTTTT
10880016 TAGGGGAAGT
Statistics
Matches: 67, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
52 28 0.42
53 13 0.19
54 26 0.39
ACGTcount: A:0.40, C:0.00, G:0.32, T:0.28
Consensus pattern (52 bp):
GGTTTGGGGAAGTAAAAGTTTTGGGGAAAAGTAAAAAGAAAAATATATTGGG
Found at i:10880023 original size:19 final size:21
Alignment explanation
Indices: 10879994--10880034 Score: 68
Period size: 19 Copynumber: 2.0 Consensus size: 21
10879984 AAATTGGGGG
10879994 TTTAGGGGGAAGTAAAA-TTT
1 TTTAGGGGGAAGTAAAAGTTT
10880014 TTTA-GGGGAAGTAAAAGTTT
1 TTTAGGGGGAAGTAAAAGTTT
10880034 T
1 T
10880035 GTTTGGGAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.34, C:0.00, G:0.29, T:0.37
Consensus pattern (21 bp):
TTTAGGGGGAAGTAAAAGTTT
Found at i:10880676 original size:22 final size:22
Alignment explanation
Indices: 10880645--10880700 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 22
10880635 TCTTTGTATT
*
10880645 TTTTTAAAATTT-GTAAT-TTTA
1 TTTTTCAAATTTAGT-ATCTTTA
*
10880666 TTTTTCGAAATTTAGTCTCTTTA
1 TTTTTC-AAATTTAGTATCTTTA
10880689 TTTTTCAAATTT
1 TTTTTCAAATTT
10880701 TAAAATTCGT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
21 5 0.17
22 13 0.43
23 12 0.40
ACGTcount: A:0.27, C:0.07, G:0.05, T:0.61
Consensus pattern (22 bp):
TTTTTCAAATTTAGTATCTTTA
Found at i:10882123 original size:18 final size:19
Alignment explanation
Indices: 10882096--10882134 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
10882086 AATCACTTTT
* *
10882096 TTTTTCATTT-AACATATA
1 TTTTTAATTTCAAAATATA
10882114 TTTTTAATTTCAAAATATA
1 TTTTTAATTTCAAAATATA
10882133 TT
1 TT
10882135 GTGACAAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (19 bp):
TTTTTAATTTCAAAATATA
Found at i:10887935 original size:24 final size:24
Alignment explanation
Indices: 10887893--10888010 Score: 85
Period size: 24 Copynumber: 4.9 Consensus size: 24
10887883 TCACAACCAA
*
10887893 ATCGGGATA-CTCATAAGAGCTATT
1 ATCGGGA-AGCTCATGAGAGCTATT
* * *
10887917 AACGGGAAGCTCGTGAGAGCCATAT
1 ATCGGGAAGCTCATGAGAGCTAT-T
** * *
10887942 ATTAGGAAGCTCAAGAGAGCTAAT
1 ATCGGGAAGCTCATGAGAGCTATT
* *
10887966 ATCGGGATGCTCATGAGAGTTATT
1 ATCGGGAAGCTCATGAGAGCTATT
* * * *
10887990 ATCAGGACGCTCTTGCGAGCT
1 ATCGGGAAGCTCATGAGAGCT
10888011 GTGGTGTGTC
Statistics
Matches: 70, Mismatches: 22, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
23 1 0.01
24 52 0.74
25 17 0.24
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.25
Consensus pattern (24 bp):
ATCGGGAAGCTCATGAGAGCTATT
Found at i:10895476 original size:74 final size:75
Alignment explanation
Indices: 10895306--10895501 Score: 317
Period size: 75 Copynumber: 2.6 Consensus size: 75
10895296 GAGATTTATT
10895306 TTTTCAGTTGAGGACATAAAACATTCCAATTGACAAGGAAGGACTTTCTTTTCTCTGATTTTGAG
1 TTTTCAGTTGAGGACATAAAACATTCCAATTGACAAGGAAGGACTTTCTTTTCTCTGATTTTGAG
10895371 CATAAAAAAG
66 CATAAAAAAG
* *
10895381 TTTTCAATTGAGGACATAAAACACTCCAATTGACAAGGAAGGAC-TTCTTCTTCT-T-ATTTTGA
1 TTTTCAGTTGAGGACATAAAACATTCCAATTGACAAGGAAGGACTTTCTT-TTCTCTGATTTTGA
*
10895443 GCATAAAAAGG
65 GCATAAAAAAG
*
10895454 ATTTTCAGTTGAGGACATAAAACATTCCAATTGACAAGGAAGGGCTTT
1 -TTTTCAGTTGAGGACATAAAACATTCCAATTGACAAGGAAGGACTTT
10895502 TCCAATTTTA
Statistics
Matches: 112, Mismatches: 6, Indels: 6
0.90 0.05 0.05
Matches are distributed among these distances:
73 17 0.15
74 47 0.42
75 48 0.43
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (75 bp):
TTTTCAGTTGAGGACATAAAACATTCCAATTGACAAGGAAGGACTTTCTTTTCTCTGATTTTGAG
CATAAAAAAG
Found at i:10898717 original size:17 final size:18
Alignment explanation
Indices: 10898678--10898717 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
10898668 TTCTCTCTCA
*
10898678 ATTTATTTATTTTTGAAT
1 ATTTATCTATTTTTGAAT
*
10898696 TTTTATCTATTTTT-AAT
1 ATTTATCTATTTTTGAAT
10898713 ATTTA
1 ATTTA
10898718 GAATTTTCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
17 7 0.37
18 12 0.63
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.68
Consensus pattern (18 bp):
ATTTATCTATTTTTGAAT
Found at i:10900620 original size:24 final size:25
Alignment explanation
Indices: 10900567--10900614 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
10900557 TTGGCCCTCT
* *
10900567 CGAGCTTCCCGTTATATGGTTCTTG
1 CGAGCTTCCCGTTATATAGCTCTTG
10900592 CGAGCTTCCCGTTA-ATAGCTCTT
1 CGAGCTTCCCGTTATATAGCTCTT
10900615 CGGAGCATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 7 0.33
25 14 0.67
ACGTcount: A:0.15, C:0.27, G:0.21, T:0.38
Consensus pattern (25 bp):
CGAGCTTCCCGTTATATAGCTCTTG
Found at i:10900798 original size:24 final size:24
Alignment explanation
Indices: 10900771--10900823 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
10900761 TGGCTCTTCG
*
10900771 GAGCTACCC-TTTATTGCCTCGCAT
1 GAGCTACCCAATTA-TGCCTCGCAT
* *
10900795 GAGCTTCCCAATTATGGCTCGCAT
1 GAGCTACCCAATTATGCCTCGCAT
10900819 GAGCT
1 GAGCT
10900824 TCTTGTTATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 22 0.88
25 3 0.12
ACGTcount: A:0.19, C:0.30, G:0.21, T:0.30
Consensus pattern (24 bp):
GAGCTACCCAATTATGCCTCGCAT
Found at i:10905338 original size:258 final size:258
Alignment explanation
Indices: 10904869--10905390 Score: 1008
Period size: 258 Copynumber: 2.0 Consensus size: 258
10904859 TAAAAAACTT
10904869 ACAAAAGAGACCAAATTACTAAATAAAGTTTGTTGTCTCGACTTTAGACCCGAATGAAACTATTT
1 ACAAAAGAGACCAAATTACTAAATAAAGTTTGTTGTCTCGACTTTAGACCCGAATGAAACTATTT
10904934 TGTTACAACATATTCGCCTTTTGTCAAAGTCTCAACGGTACCCCTTCCTTATGTGCCTTACACTT
66 TGTTACAACATATTCGCCTTTTGTCAAAGTCTCAACGGTACCCCTTCCTTATGTGCCTTACACTT
10904999 TCCAGATGAATTTCCTTGATCTCACACGGTCTAACTTGGTCCCTTCTCGAGCTCCTTATCCAATG
131 TCCAGATGAATTTCCTTGATCTCACACGGTCTAACTTGGTCCCTTCTCGAGCTCCTTATCCAATG
*
10905064 AATCTTGTAATCACAAGTCATACCCTTGTAAGTTCGAATGAACTTAGTAAGTTTCTAAGTTAC
196 AATCCTGTAATCACAAGTCATACCCTTGTAAGTTCGAATGAACTTAGTAAGTTTCTAAGTTAC
*
10905127 ACAAAAGAGACCAAATTACTAAATAAAGTTTGTTGTCTCGACTTTAGACCCTAATGAAACTATTT
1 ACAAAAGAGACCAAATTACTAAATAAAGTTTGTTGTCTCGACTTTAGACCCGAATGAAACTATTT
10905192 TGTTACAACATATTCGCCTTTTGTCAAAGTCTCAACGGTACCCCTTCCTTATGTGCCTTACACTT
66 TGTTACAACATATTCGCCTTTTGTCAAAGTCTCAACGGTACCCCTTCCTTATGTGCCTTACACTT
*
10905257 TCCAGATGAATTTCCTTGATCTCACACGGTCTAGCTTGGTCCCTTCTCGAGCTCCTTATCCAATG
131 TCCAGATGAATTTCCTTGATCTCACACGGTCTAACTTGGTCCCTTCTCGAGCTCCTTATCCAATG
*
10905322 AATCCTGTAGTCACAAGTCATACCCTTGTAAGTTCGAATGAACTTAGTAAGTTTCTAAGTTAC
196 AATCCTGTAATCACAAGTCATACCCTTGTAAGTTCGAATGAACTTAGTAAGTTTCTAAGTTAC
10905385 ACAAAA
1 ACAAAA
10905391 TATGCCCCAC
Statistics
Matches: 260, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
258 260 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (258 bp):
ACAAAAGAGACCAAATTACTAAATAAAGTTTGTTGTCTCGACTTTAGACCCGAATGAAACTATTT
TGTTACAACATATTCGCCTTTTGTCAAAGTCTCAACGGTACCCCTTCCTTATGTGCCTTACACTT
TCCAGATGAATTTCCTTGATCTCACACGGTCTAACTTGGTCCCTTCTCGAGCTCCTTATCCAATG
AATCCTGTAATCACAAGTCATACCCTTGTAAGTTCGAATGAACTTAGTAAGTTTCTAAGTTAC
Found at i:10905927 original size:17 final size:18
Alignment explanation
Indices: 10905901--10905965 Score: 53
Period size: 17 Copynumber: 3.6 Consensus size: 18
10905891 TAAACCATAT
*
10905901 TATTTTTATT-TTTTAAA
1 TATTTATATTATTTTAAA
10905918 TATTTATATTATTTTAATTAA
1 TATTTATATTATTTT-A--AA
* *
10905939 TATTTA-ATAATTTTATA
1 TATTTATATTATTTTAAA
*
10905956 TATTTTTATT
1 TATTTATATT
10905966 GAAATTTTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 9
0.73 0.10 0.17
Matches are distributed among these distances:
17 15 0.39
18 6 0.16
19 2 0.05
20 7 0.18
21 8 0.21
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (18 bp):
TATTTATATTATTTTAAA
Found at i:10908936 original size:46 final size:46
Alignment explanation
Indices: 10908869--10908960 Score: 175
Period size: 46 Copynumber: 2.0 Consensus size: 46
10908859 TTCATAAGTA
*
10908869 AATGGATTATGGGTTTCCTAATTACAACCTTCTTATCTGAAGACAG
1 AATGGATTATGGGTTTCCTAATGACAACCTTCTTATCTGAAGACAG
10908915 AATGGATTATGGGTTTCCTAATGACAACCTTCTTATCTGAAGACAG
1 AATGGATTATGGGTTTCCTAATGACAACCTTCTTATCTGAAGACAG
10908961 GACTGGAAGC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (46 bp):
AATGGATTATGGGTTTCCTAATGACAACCTTCTTATCTGAAGACAG
Found at i:10918548 original size:21 final size:21
Alignment explanation
Indices: 10918527--10918568 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10918517 TGATGTATTT
*
10918527 AAATAATATTTTATATTTTTTA
1 AAAT-ATATTTTACATTTTTTA
*
10918549 AAATATTTTTTACATTTTTT
1 AAATATATTTTACATTTTTT
10918569 TTATTTTTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (21 bp):
AAATATATTTTACATTTTTTA
Found at i:10922654 original size:26 final size:26
Alignment explanation
Indices: 10922618--10922669 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
10922608 TGATGACTTC
10922618 GACATTTCTTTACTAAAAATTAATTA
1 GACATTTCTTTACTAAAAATTAATTA
10922644 GACATTTCTTTACTAAAAATTAATTA
1 GACATTTCTTTACTAAAAATTAATTA
10922670 TCTCTTAGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.12, G:0.04, T:0.42
Consensus pattern (26 bp):
GACATTTCTTTACTAAAAATTAATTA
Found at i:10922675 original size:22 final size:23
Alignment explanation
Indices: 10922624--10922675 Score: 61
Period size: 26 Copynumber: 2.2 Consensus size: 23
10922614 CTTCGACATT
*
10922624 TCTTTACTAAAAATTAATTAGACATT
1 TCTTTACTAAAAATTAATT--A-ATC
10922650 TCTTTACTAAAAATTAATT-ATC
1 TCTTTACTAAAAATTAATTAATC
10922672 TCTT
1 TCTT
10922676 AGTACAGGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
22 6 0.24
26 19 0.76
ACGTcount: A:0.38, C:0.13, G:0.02, T:0.46
Consensus pattern (23 bp):
TCTTTACTAAAAATTAATTAATC
Found at i:10923686 original size:23 final size:23
Alignment explanation
Indices: 10923654--10923697 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
10923644 ACTACCATTT
*
10923654 TCTAAATAAAATAATAATAAATA
1 TCTAAATAAAACAATAATAAATA
* *
10923677 TCTAAGTAAAACATTAATAAA
1 TCTAAATAAAACAATAATAAA
10923698 ATAATATTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.30
Consensus pattern (23 bp):
TCTAAATAAAACAATAATAAATA
Found at i:10924158 original size:23 final size:23
Alignment explanation
Indices: 10924126--10924169 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
10924116 ACTACCATTT
*
10924126 TCTAAATAAAATAATAATAAATA
1 TCTAAATAAAACAATAATAAATA
* *
10924149 TCTAAGTAAAACATTAATAAA
1 TCTAAATAAAACAATAATAAA
10924170 ATAATATTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.61, C:0.07, G:0.02, T:0.30
Consensus pattern (23 bp):
TCTAAATAAAACAATAATAAATA
Found at i:10924317 original size:472 final size:472
Alignment explanation
Indices: 10923433--10924376 Score: 1879
Period size: 472 Copynumber: 2.0 Consensus size: 472
10923423 CTACTATTTT
10923433 ATTGCTTCTAAATTGATGAATATATTCTATAGAATCTCTACTTCATCTTCTCTCTTTAATATCTA
1 ATTGCTTCTAAATTGATGAATATATTCTATAGAATCTCTACTTCATCTTCTCTCTTTAATATCTA
10923498 ATAAAATTTTTAAAACTTTTGGGTAAAAAGGTAGGTTTTCATGAAAAAGGACTAAATTGTAAAGA
66 ATAAAATTTTTAAAACTTTTGGGTAAAAAGGTAGGTTTTCATGAAAAAGGACTAAATTGTAAAGA
10923563 AAAGAAAACTTTCTTTCTCACCTTTCCACTCGCGTTGGAAGGAAGGATGATAAATTTCCTTCATC
131 AAAGAAAACTTTCTTTCTCACCTTTCCACTCGCGTTGGAAGGAAGGATGATAAATTTCCTTCATC
*
10923628 CTTCCTTTCTTTTTATACTACCATTTTCTAAATAAAATAATAATAAATATCTAAGTAAAACATTA
196 CTTCCTTTCTTTCTATACTACCATTTTCTAAATAAAATAATAATAAATATCTAAGTAAAACATTA
10923693 ATAAAATAATATTTAACTAATTAATTAATTAAAAAATCACCAAAAAATCATCAACATCATCATTA
261 ATAAAATAATATTTAACTAATTAATTAATTAAAAAATCACCAAAAAATCATCAACATCATCATTA
10923758 CATTTTAGAATTCTCCCTCTTACTAACTGACTATTTTATTCTTTATGATCTTTAAAATTTCATCC
326 CATTTTAGAATTCTCCCTCTTACTAACTGACTATTTTATTCTTTATGATCTTTAAAATTTCATCC
10923823 TTGAATAATCACTTAATTTAGTAAAATTACAATTTAGTCCCTCACAATTCTTCACCTATTCAATT
391 TTGAATAATCACTTAATTTAGTAAAATTACAATTTAGTCCCTCACAATTCTTCACCTATTCAATT
10923888 TGGTCCTTGCATGCCAA
456 TGGTCCTTGCATGCCAA
10923905 ATTGCTTCTAAATTGATGAATATATTCTATAGAATCTCTACTTCATCTTCTCTCTTTAATATCTA
1 ATTGCTTCTAAATTGATGAATATATTCTATAGAATCTCTACTTCATCTTCTCTCTTTAATATCTA
10923970 ATAAAATTTTTAAAACTTTTGGGTAAAAAGGTAGGTTTTCATGAAAAAGGACTAAATTGTAAAGA
66 ATAAAATTTTTAAAACTTTTGGGTAAAAAGGTAGGTTTTCATGAAAAAGGACTAAATTGTAAAGA
10924035 AAAGAAAACTTTCTTTCTCACCTTTCCACTCGCGTTGGAAGGAAGGATGATAAATTTCCTTCATC
131 AAAGAAAACTTTCTTTCTCACCTTTCCACTCGCGTTGGAAGGAAGGATGATAAATTTCCTTCATC
10924100 CTTCCTTTCTTTCTATACTACCATTTTCTAAATAAAATAATAATAAATATCTAAGTAAAACATTA
196 CTTCCTTTCTTTCTATACTACCATTTTCTAAATAAAATAATAATAAATATCTAAGTAAAACATTA
10924165 ATAAAATAATATTTAACTAATTAATTAATTAAAAAATCACCAAAAAATCATCAACATCATCATTA
261 ATAAAATAATATTTAACTAATTAATTAATTAAAAAATCACCAAAAAATCATCAACATCATCATTA
10924230 CATTTTAGAATTCTCCCTCTTACTAACTGACTATTTTATTCTTTATGATCTTTAAAATTTCATCC
326 CATTTTAGAATTCTCCCTCTTACTAACTGACTATTTTATTCTTTATGATCTTTAAAATTTCATCC
10924295 TTGAATAATCACTTAATTTAGTAAAATTACAATTTAGTCCCTCACAATTCTTCACCTATTCAATT
391 TTGAATAATCACTTAATTTAGTAAAATTACAATTTAGTCCCTCACAATTCTTCACCTATTCAATT
10924360 TGGTCCTTGCATGCCAA
456 TGGTCCTTGCATGCCAA
10924377 TTCCATATCT
Statistics
Matches: 471, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
472 471 1.00
ACGTcount: A:0.37, C:0.17, G:0.08, T:0.38
Consensus pattern (472 bp):
ATTGCTTCTAAATTGATGAATATATTCTATAGAATCTCTACTTCATCTTCTCTCTTTAATATCTA
ATAAAATTTTTAAAACTTTTGGGTAAAAAGGTAGGTTTTCATGAAAAAGGACTAAATTGTAAAGA
AAAGAAAACTTTCTTTCTCACCTTTCCACTCGCGTTGGAAGGAAGGATGATAAATTTCCTTCATC
CTTCCTTTCTTTCTATACTACCATTTTCTAAATAAAATAATAATAAATATCTAAGTAAAACATTA
ATAAAATAATATTTAACTAATTAATTAATTAAAAAATCACCAAAAAATCATCAACATCATCATTA
CATTTTAGAATTCTCCCTCTTACTAACTGACTATTTTATTCTTTATGATCTTTAAAATTTCATCC
TTGAATAATCACTTAATTTAGTAAAATTACAATTTAGTCCCTCACAATTCTTCACCTATTCAATT
TGGTCCTTGCATGCCAA
Found at i:10924551 original size:3 final size:3
Alignment explanation
Indices: 10924537--10924571 Score: 61
Period size: 3 Copynumber: 11.3 Consensus size: 3
10924527 TAAAACCTAC
10924537 TTA TTAA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA T
10924572 CATCATCATC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:10924576 original size:3 final size:3
Alignment explanation
Indices: 10924570--10924610 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
10924560 TATTATTATT
10924570 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
10924611 TTTAATACTC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:10925936 original size:61 final size:61
Alignment explanation
Indices: 10925866--10925981 Score: 187
Period size: 61 Copynumber: 1.9 Consensus size: 61
10925856 ATTTAAAATT
10925866 AAATTTAATTCAATATTTATCTAAATAGTATTTTATCAATTGAATATTAATATGAGATATG
1 AAATTTAATTCAATATTTATCTAAATAGTATTTTATCAATTGAATATTAATATGAGATATG
* * * * *
10925927 AAATTTAATTTAATATTTATCTAGATATTATTTTATTAATTTAATATTAATATGA
1 AAATTTAATTCAATATTTATCTAAATAGTATTTTATCAATTGAATATTAATATGA
10925982 TTAATTCTAA
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 50 1.00
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.48
Consensus pattern (61 bp):
AAATTTAATTCAATATTTATCTAAATAGTATTTTATCAATTGAATATTAATATGAGATATG
Found at i:10925967 original size:31 final size:31
Alignment explanation
Indices: 10925870--10925974 Score: 97
Period size: 31 Copynumber: 3.4 Consensus size: 31
10925860 AAAATTAAAT
* * *
10925870 TTAATTCAATATTTATCTAAATAGTATTTTA
1 TTAATTTAATATTTATCTAGATATTATTTTA
* * * * * **
10925901 TCAATTGAATATTAATATGAGATATGA-AAT-
1 TTAATTTAATATTTATCT-AGATATTATTTTA
10925931 TTAATTTAATATTTATCTAGATATTATTTTA
1 TTAATTTAATATTTATCTAGATATTATTTTA
10925962 TTAATTTAATATT
1 TTAATTTAATATT
10925975 AATATGATTA
Statistics
Matches: 55, Mismatches: 16, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
29 7 0.13
30 15 0.27
31 28 0.51
32 5 0.09
ACGTcount: A:0.40, C:0.04, G:0.06, T:0.50
Consensus pattern (31 bp):
TTAATTTAATATTTATCTAGATATTATTTTA
Found at i:10927348 original size:22 final size:20
Alignment explanation
Indices: 10927310--10927350 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
10927300 CATGCCATGC
*
10927310 ATATATTAGAAGCATGTCAT
1 ATATATTAGAAGAATGTCAT
10927330 ATATATTAGGTAAGAATGTCA
1 ATATATTA-G-AAGAATGTCA
10927351 CTAGGACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 1 0.06
22 9 0.50
ACGTcount: A:0.41, C:0.07, G:0.17, T:0.34
Consensus pattern (20 bp):
ATATATTAGAAGAATGTCAT
Found at i:10930223 original size:8 final size:8
Alignment explanation
Indices: 10930212--10930259 Score: 51
Period size: 8 Copynumber: 5.5 Consensus size: 8
10930202 TTAAAATTTC
10930212 AAAAAAAT
1 AAAAAAAT
10930220 AAAAAAAT
1 AAAAAAAT
*
10930228 AAAAAAGTTT
1 AAAAAA--AT
10930238 AATAAAAAAT
1 -A-AAAAAAT
10930248 AAAAAAAT
1 AAAAAAAT
10930256 AAAA
1 AAAA
10930260 TTAGTTTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
8 25 0.74
9 1 0.03
10 2 0.06
11 1 0.03
12 5 0.15
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (8 bp):
AAAAAAAT
Found at i:10930249 original size:28 final size:29
Alignment explanation
Indices: 10930213--10930269 Score: 98
Period size: 28 Copynumber: 2.0 Consensus size: 29
10930203 TAAAATTTCA
10930213 AAAAAATAAAAAAATAAAA-AAGTTTAAT
1 AAAAAATAAAAAAATAAAATAAGTTTAAT
*
10930241 AAAAAATAAAAAAATAAAATTAGTTTAAT
1 AAAAAATAAAAAAATAAAATAAGTTTAAT
10930270 TTTTAAAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 19 0.70
29 8 0.30
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.25
Consensus pattern (29 bp):
AAAAAATAAAAAAATAAAATAAGTTTAAT
Found at i:10931001 original size:5 final size:5
Alignment explanation
Indices: 10930991--10931015 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
10930981 CTTTTACAGT
10930991 AAAAG AAAAG AAAAG AAAAG AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG
10931016 CTGCACCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:10933673 original size:14 final size:14
Alignment explanation
Indices: 10933641--10933674 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
10933631 ATATTTTCAA
10933641 AATATTAAAATATG
1 AATATTAAAATATG
10933655 AATATATAAAATATG
1 AATAT-TAAAATATG
10933670 -ATATT
1 AATATT
10933675 TTACTAATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 1 0.05
14 9 0.47
15 9 0.47
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (14 bp):
AATATTAAAATATG
Found at i:10933757 original size:28 final size:28
Alignment explanation
Indices: 10933724--10933797 Score: 139
Period size: 28 Copynumber: 2.6 Consensus size: 28
10933714 TGCACGTTTT
*
10933724 GAATTTGGTCCCTTACTTCTATTTCCAA
1 GAATTTAGTCCCTTACTTCTATTTCCAA
10933752 GAATTTAGTCCCTTACTTCTATTTCCAA
1 GAATTTAGTCCCTTACTTCTATTTCCAA
10933780 GAATTTAGTCCCTTACTT
1 GAATTTAGTCCCTTACTT
10933798 TTTGGATTTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.43
Consensus pattern (28 bp):
GAATTTAGTCCCTTACTTCTATTTCCAA
Found at i:10941831 original size:31 final size:32
Alignment explanation
Indices: 10941794--10941927 Score: 84
Period size: 31 Copynumber: 4.3 Consensus size: 32
10941784 TCATGATTTT
10941794 TTAAATATTTTTTAATTATTGTTA-AATTTAG
1 TTAAATATTTTTTAATTATTGTTACAATTTAG
** * **
10941825 TTAAATATTTTGAAATT-TTTTTAACAAACTA-
1 TTAAATATTTTTTAATTATTGTT-ACAATTTAG
* * * * * ** *
10941856 CTAAA-AGTATTTTAATAACT-TCATGATTT-T
1 TTAAATA-TTTTTTAATTATTGTTACAATTTAG
10941886 TTAAATATTTTTTAATTATTGTTA-AATTTAG
1 TTAAATATTTTTTAATTATTGTTACAATTTAG
10941917 TTAAATATTTT
1 TTAAATATTTT
10941928 GAAATTTTTT
Statistics
Matches: 72, Mismatches: 23, Indels: 16
0.65 0.21 0.14
Matches are distributed among these distances:
30 26 0.36
31 41 0.57
32 5 0.07
ACGTcount: A:0.37, C:0.04, G:0.05, T:0.54
Consensus pattern (32 bp):
TTAAATATTTTTTAATTATTGTTACAATTTAG
Found at i:10941848 original size:20 final size:19
Alignment explanation
Indices: 10941792--10941848 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 19
10941782 CTTCATGATT
*
10941792 TTTTAAATATTTTTTAATTA
1 TTTTAAAT-TTTTTTAAATA
**
10941812 TTGTTAAATTTAGTTAAATA
1 TT-TTAAATTTTTTTAAATA
10941832 TTTTGAAATTTTTTTAA
1 TTTT-AAATTTTTTTAA
10941849 CAAACTACTA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
19 2 0.07
20 22 0.73
21 6 0.20
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (19 bp):
TTTTAAATTTTTTTAAATA
Found at i:10941874 original size:92 final size:93
Alignment explanation
Indices: 10941761--10941945 Score: 363
Period size: 92 Copynumber: 2.0 Consensus size: 93
10941751 ACACCCTTAA
10941761 TACTAAAAGTAATTTTAATAACTTCATGATTTTTTAAATATTTTTTAATTATTGTTAAATTTAGT
1 TACTAAAAGTAATTTTAATAACTTCATGATTTTTTAAATATTTTTTAATTATTGTTAAATTTAGT
10941826 TAAATATTTTGAAATTTTTTTAACAAAC
66 TAAATATTTTGAAATTTTTTTAACAAAC
10941854 TACTAAAAGT-ATTTTAATAACTTCATGATTTTTTAAATATTTTTTAATTATTGTTAAATTTAGT
1 TACTAAAAGTAATTTTAATAACTTCATGATTTTTTAAATATTTTTTAATTATTGTTAAATTTAGT
10941918 TAAATATTTTGAAATTTTTTTAACAAAC
66 TAAATATTTTGAAATTTTTTTAACAAAC
10941946 AATTTTACAA
Statistics
Matches: 92, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
92 82 0.89
93 10 0.11
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (93 bp):
TACTAAAAGTAATTTTAATAACTTCATGATTTTTTAAATATTTTTTAATTATTGTTAAATTTAGT
TAAATATTTTGAAATTTTTTTAACAAAC
Found at i:10941940 original size:20 final size:19
Alignment explanation
Indices: 10941884--10941940 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 19
10941874 CTTCATGATT
*
10941884 TTTTAAATATTTTTTAATTA
1 TTTTAAAT-TTTTTTAAATA
**
10941904 TTGTTAAATTTAGTTAAATA
1 TT-TTAAATTTTTTTAAATA
10941924 TTTTGAAATTTTTTTAA
1 TTTT-AAATTTTTTTAA
10941941 CAAACAATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
19 2 0.07
20 22 0.73
21 6 0.20
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (19 bp):
TTTTAAATTTTTTTAAATA
Found at i:10951046 original size:16 final size:16
Alignment explanation
Indices: 10951025--10951060 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
10951015 TTTGGTTCGC
10951025 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
10951041 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
10951057 TGTA
1 TGTA
10951061 ATAGCAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:10951312 original size:15 final size:15
Alignment explanation
Indices: 10951277--10951329 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10951267 TTAATCATAT
* *
10951277 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10951293 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10951308 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10951324 TAAAAT
1 TTAAAT
10951330 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10951466 original size:155 final size:155
Alignment explanation
Indices: 10951184--10956501 Score: 10609
Period size: 155 Copynumber: 34.3 Consensus size: 155
10951174 TAGAATACCC
* * *
10951184 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10951249 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10951314 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10951339 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10951404 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10951469 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10951494 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10951559 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10951624 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10951649 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10951714 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10951779 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10951804 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10951869 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10951934 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10951959 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10952024 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10952089 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10952114 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10952179 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10952244 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10952269 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10952334 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10952399 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10952424 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10952489 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10952554 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10952579 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10952644 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10952709 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10952734 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10952799 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10952864 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10952889 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10952954 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10953019 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10953044 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10953109 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10953174 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10953199 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10953264 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10953329 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10953354 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10953419 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10953484 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10953509 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10953574 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10953639 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10953664 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10953729 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10953794 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10953819 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10953884 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10953949 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10953974 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10954039 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10954104 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10954129 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10954194 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10954259 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10954284 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10954349 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10954414 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10954439 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10954504 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10954569 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10954594 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10954659 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10954724 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10954749 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10954814 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10954879 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10954904 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10954969 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10955034 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10955059 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10955124 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10955189 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10955214 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10955279 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10955344 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10955369 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10955434 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10955499 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10955524 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10955589 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10955654 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10955679 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10955744 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10955809 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10955834 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10955899 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10955964 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10955989 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10956054 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10956119 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10956144 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10956209 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10956274 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10956299 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
10956364 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
10956429 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
10956454 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAA
10956502 CACCTTTTCG
Statistics
Matches: 5160, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
155 5160 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (155 bp):
TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
TATAATTTAATAAAATTCTTAATAA
Found at i:10951467 original size:15 final size:15
Alignment explanation
Indices: 10951432--10951484 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10951422 TTAATCATAT
* *
10951432 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10951448 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10951463 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10951479 TAAAAT
1 TTAAAT
10951485 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10951622 original size:15 final size:15
Alignment explanation
Indices: 10951587--10951639 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10951577 TTAATCATAT
* *
10951587 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10951603 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10951618 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10951634 TAAAAT
1 TTAAAT
10951640 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10951777 original size:15 final size:15
Alignment explanation
Indices: 10951742--10951794 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10951732 TTAATCATAT
* *
10951742 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10951758 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10951773 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10951789 TAAAAT
1 TTAAAT
10951795 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10951932 original size:15 final size:15
Alignment explanation
Indices: 10951897--10951949 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10951887 TTAATCATAT
* *
10951897 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10951913 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10951928 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10951944 TAAAAT
1 TTAAAT
10951950 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10952087 original size:15 final size:15
Alignment explanation
Indices: 10952052--10952104 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10952042 TTAATCATAT
* *
10952052 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10952068 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10952083 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10952099 TAAAAT
1 TTAAAT
10952105 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10952242 original size:15 final size:15
Alignment explanation
Indices: 10952207--10952259 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10952197 TTAATCATAT
* *
10952207 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10952223 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10952238 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10952254 TAAAAT
1 TTAAAT
10952260 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10952397 original size:15 final size:15
Alignment explanation
Indices: 10952362--10952414 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10952352 TTAATCATAT
* *
10952362 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10952378 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10952393 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10952409 TAAAAT
1 TTAAAT
10952415 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10952552 original size:15 final size:15
Alignment explanation
Indices: 10952517--10952569 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10952507 TTAATCATAT
* *
10952517 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10952533 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10952548 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10952564 TAAAAT
1 TTAAAT
10952570 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10952707 original size:15 final size:15
Alignment explanation
Indices: 10952672--10952724 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10952662 TTAATCATAT
* *
10952672 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10952688 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10952703 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10952719 TAAAAT
1 TTAAAT
10952725 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10952862 original size:15 final size:15
Alignment explanation
Indices: 10952827--10952879 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10952817 TTAATCATAT
* *
10952827 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10952843 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10952858 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10952874 TAAAAT
1 TTAAAT
10952880 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10953017 original size:15 final size:15
Alignment explanation
Indices: 10952982--10953034 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10952972 TTAATCATAT
* *
10952982 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10952998 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10953013 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10953029 TAAAAT
1 TTAAAT
10953035 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10953172 original size:15 final size:15
Alignment explanation
Indices: 10953137--10953189 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10953127 TTAATCATAT
* *
10953137 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10953153 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10953168 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10953184 TAAAAT
1 TTAAAT
10953190 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10953327 original size:15 final size:15
Alignment explanation
Indices: 10953292--10953344 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10953282 TTAATCATAT
* *
10953292 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10953308 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10953323 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10953339 TAAAAT
1 TTAAAT
10953345 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10953482 original size:15 final size:15
Alignment explanation
Indices: 10953447--10953499 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10953437 TTAATCATAT
* *
10953447 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10953463 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10953478 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10953494 TAAAAT
1 TTAAAT
10953500 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10953637 original size:15 final size:15
Alignment explanation
Indices: 10953602--10953654 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10953592 TTAATCATAT
* *
10953602 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10953618 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10953633 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10953649 TAAAAT
1 TTAAAT
10953655 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10953792 original size:15 final size:15
Alignment explanation
Indices: 10953757--10953809 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10953747 TTAATCATAT
* *
10953757 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10953773 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10953788 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10953804 TAAAAT
1 TTAAAT
10953810 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10953947 original size:15 final size:15
Alignment explanation
Indices: 10953912--10953964 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10953902 TTAATCATAT
* *
10953912 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10953928 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10953943 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10953959 TAAAAT
1 TTAAAT
10953965 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10954102 original size:15 final size:15
Alignment explanation
Indices: 10954067--10954119 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10954057 TTAATCATAT
* *
10954067 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10954083 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10954098 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10954114 TAAAAT
1 TTAAAT
10954120 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10954257 original size:15 final size:15
Alignment explanation
Indices: 10954222--10954274 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10954212 TTAATCATAT
* *
10954222 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10954238 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10954253 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10954269 TAAAAT
1 TTAAAT
10954275 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10954412 original size:15 final size:15
Alignment explanation
Indices: 10954377--10954429 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10954367 TTAATCATAT
* *
10954377 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10954393 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10954408 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10954424 TAAAAT
1 TTAAAT
10954430 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10954567 original size:15 final size:15
Alignment explanation
Indices: 10954532--10954584 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10954522 TTAATCATAT
* *
10954532 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10954548 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10954563 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10954579 TAAAAT
1 TTAAAT
10954585 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10954722 original size:15 final size:15
Alignment explanation
Indices: 10954687--10954739 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10954677 TTAATCATAT
* *
10954687 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10954703 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10954718 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10954734 TAAAAT
1 TTAAAT
10954740 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10954877 original size:15 final size:15
Alignment explanation
Indices: 10954842--10954894 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10954832 TTAATCATAT
* *
10954842 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10954858 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10954873 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10954889 TAAAAT
1 TTAAAT
10954895 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10955032 original size:15 final size:15
Alignment explanation
Indices: 10954997--10955049 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10954987 TTAATCATAT
* *
10954997 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10955013 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10955028 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10955044 TAAAAT
1 TTAAAT
10955050 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10955187 original size:15 final size:15
Alignment explanation
Indices: 10955152--10955204 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10955142 TTAATCATAT
* *
10955152 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10955168 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10955183 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10955199 TAAAAT
1 TTAAAT
10955205 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10955342 original size:15 final size:15
Alignment explanation
Indices: 10955307--10955359 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10955297 TTAATCATAT
* *
10955307 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10955323 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10955338 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10955354 TAAAAT
1 TTAAAT
10955360 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10955497 original size:15 final size:15
Alignment explanation
Indices: 10955462--10955514 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10955452 TTAATCATAT
* *
10955462 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10955478 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10955493 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10955509 TAAAAT
1 TTAAAT
10955515 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10955652 original size:15 final size:15
Alignment explanation
Indices: 10955617--10955669 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10955607 TTAATCATAT
* *
10955617 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10955633 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10955648 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10955664 TAAAAT
1 TTAAAT
10955670 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10955807 original size:15 final size:15
Alignment explanation
Indices: 10955772--10955824 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10955762 TTAATCATAT
* *
10955772 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10955788 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10955803 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10955819 TAAAAT
1 TTAAAT
10955825 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:10955962 original size:15 final size:15
Alignment explanation
Indices: 10955927--10955979 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
10955917 TTAATCATAT
* *
10955927 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
10955943 TTAAATATATTTTAA
1 TTAAATATAATTTAA
10955958 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
10955974 TAAAAT
1 TTAAAT
10955980 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Done.