Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 45 of 145
Found at i:14513911 original size:18 final size:17
Alignment explanation
Indices: 14513869--14513918 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
14513859 TAATATCGAT
14513869 TATTCAAATAA-AAAAG
1 TATTCAAATAACAAAAG
*
14513885 TATTTAAATAACAAAA-
1 TATTCAAATAACAAAAG
*
14513901 TAAATTCAAATTACAAAA
1 T--ATTCAAATAACAAAA
14513919 AAAAGATAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
16 11 0.39
17 4 0.14
18 13 0.46
ACGTcount: A:0.62, C:0.08, G:0.02, T:0.28
Consensus pattern (17 bp):
TATTCAAATAACAAAAG
Found at i:14515934 original size:30 final size:30
Alignment explanation
Indices: 14515898--14515960 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
14515888 ACTTATTTTA
14515898 TTGTTAATTTTATTATTATTTTAAAGGCAT
1 TTGTTAATTTTATTATTATTTTAAAGGCAT
* *
14515928 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTATTATTATTTTAAAGGCAT
14515958 TTG
1 TTG
14515961 CTTGTTTAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.25, C:0.03, G:0.14, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTATTATTATTTTAAAGGCAT
Found at i:14524990 original size:31 final size:32
Alignment explanation
Indices: 14524955--14525014 Score: 79
Period size: 31 Copynumber: 1.9 Consensus size: 32
14524945 ATGTGTATGA
*
14524955 TTGAATCAAAATTAAAA-TTTCAT-GTATACAT
1 TTGAACCAAAA-TAAAAGTTTCATGGTATACAT
*
14524986 TTGAACCATAATAAAAGTTTCATGGTATA
1 TTGAACCAAAATAAAAGTTTCATGGTATA
14525015 ATTACACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 5 0.20
31 15 0.60
32 5 0.20
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.37
Consensus pattern (32 bp):
TTGAACCAAAATAAAAGTTTCATGGTATACAT
Found at i:14525048 original size:29 final size:29
Alignment explanation
Indices: 14525014--14525077 Score: 85
Period size: 31 Copynumber: 2.2 Consensus size: 29
14525004 TTCATGGTAT
*
14525014 AATTACAC-CAAATCAAAATTCATGTATCA
1 AATTACACACAAATCAAAATTCATATAT-A
*
14525043 AATTACACATTAAATCAAAATTCATATATA
1 AATTACACA-CAAATCAAAATTCATATATA
14525073 AATTA
1 AATTA
14525078 AAATTTCTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
29 8 0.26
30 6 0.19
31 17 0.55
ACGTcount: A:0.52, C:0.16, G:0.02, T:0.31
Consensus pattern (29 bp):
AATTACACACAAATCAAAATTCATATATA
Found at i:14535746 original size:26 final size:27
Alignment explanation
Indices: 14535696--14535746 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
14535686 TTTTAAATGT
*
14535696 TCGTGTTCATTAATTTTAAATTTATGC
1 TCGTGTTCATTAATTTTAAAATTATGC
*
14535723 TCGTGTTCATTTA-TTTAAAATTAT
1 TCGTGTTCATTAATTTTAAAATTAT
14535747 ATATTTTGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.27, C:0.10, G:0.10, T:0.53
Consensus pattern (27 bp):
TCGTGTTCATTAATTTTAAAATTATGC
Found at i:14540653 original size:6 final size:6
Alignment explanation
Indices: 14540609--14540649 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
14540599 TTGTAGTTGG
* * *
14540609 AAATGG AAATGA AAATGA AAATGA AAATAA AAATGG AAATG
1 AAATGA AAATGA AAATGA AAATGA AAATGA AAATGA AAATG
14540650 GAAACTTGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (6 bp):
AAATGA
Found at i:14540840 original size:26 final size:25
Alignment explanation
Indices: 14540797--14540868 Score: 85
Period size: 26 Copynumber: 2.8 Consensus size: 25
14540787 AAATTTCTCG
*
14540797 AAAA-TTTACTAGGGGTAAAATCGTC
1 AAAATTTTACTA-GAGTAAAATCGTC
*
14540822 AAAATTTTA-TCATGAGTAAAATCGTT
1 AAAATTTTACT-A-GAGTAAAATCGTC
14540848 AAAATTTTACTAGAGTAAAAT
1 AAAATTTTACTAGAGTAAAAT
14540869 TGGGATGATA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
25 14 0.34
26 26 0.63
27 1 0.02
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.33
Consensus pattern (25 bp):
AAAATTTTACTAGAGTAAAATCGTC
Found at i:14542397 original size:13 final size:13
Alignment explanation
Indices: 14542355--14542439 Score: 66
Period size: 13 Copynumber: 6.4 Consensus size: 13
14542345 TTTAGTGTTA
14542355 TTTTATTATTTAT
1 TTTTATTATTTAT
*
14542368 TTTTCTTAATGTTTAT
1 TTTTATT-A--TTTAT
14542384 TTATT-TTATTTAT
1 TT-TTATTATTTAT
*
14542397 TTTTATTTTTTAT
1 TTTTATTATTTAT
**
14542410 TTTTATT-TTGGT
1 TTTTATTATTTAT
* *
14542422 TTTTATTTTTTCT
1 TTTTATTATTTAT
14542435 TTTTA
1 TTTTA
14542440 CACGTTCTGT
Statistics
Matches: 60, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
12 12 0.20
13 35 0.58
14 1 0.02
15 1 0.02
16 9 0.15
17 2 0.03
ACGTcount: A:0.16, C:0.02, G:0.04, T:0.78
Consensus pattern (13 bp):
TTTTATTATTTAT
Found at i:14542401 original size:19 final size:18
Alignment explanation
Indices: 14542360--14542432 Score: 65
Period size: 19 Copynumber: 3.7 Consensus size: 18
14542350 TGTTATTTTA
*
14542360 TTATTTATTTTTCTTAATGT
1 TTATTTATTTTT-TT-ATTT
14542380 TTATTTATTTTATTTATTT
1 TTATTTATTTT-TTTATTT
*
14542399 TTATTTTTTATTTTTATTT
1 TTATTTATT-TTTTTATTT
*
14542418 TGGTTTTTATTTTTT
1 T--TATTTATTTTTT
14542433 CTTTTTACAC
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
19 19 0.42
20 19 0.42
21 7 0.16
ACGTcount: A:0.16, C:0.01, G:0.04, T:0.78
Consensus pattern (18 bp):
TTATTTATTTTTTTATTT
Found at i:14542403 original size:6 final size:6
Alignment explanation
Indices: 14542379--14542431 Score: 54
Period size: 6 Copynumber: 8.5 Consensus size: 6
14542369 TTTCTTAATG
**
14542379 TTTATT TATT-TT ATTTATT TTTATTT TTTATT TTTATT TTGGTT TTTATT
1 TTTATT T-TTATT -TTTATT TTTA-TT TTTATT TTTATT TTTATT TTTATT
14542429 TTT
1 TTT
14542432 TCTTTTTACA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
6 28 0.72
7 11 0.28
ACGTcount: A:0.15, C:0.00, G:0.04, T:0.81
Consensus pattern (6 bp):
TTTATT
Found at i:14543076 original size:21 final size:21
Alignment explanation
Indices: 14543050--14543104 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
14543040 ACAGGCAACT
14543050 CACACGGGCGTGTGTCCCCTC
1 CACACGGGCGTGTGTCCCCTC
**
14543071 CACACGGGCGTGTGTGGCCTC
1 CACACGGGCGTGTGTCCCCTC
**
14543092 CACATAGGCGTGT
1 CACACGGGCGTGT
14543105 AGACCCCCAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.13, C:0.35, G:0.33, T:0.20
Consensus pattern (21 bp):
CACACGGGCGTGTGTCCCCTC
Found at i:14545961 original size:14 final size:14
Alignment explanation
Indices: 14545942--14545977 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
14545932 TCATTTAATC
*
14545942 ACCAAAATTATTAA
1 ACCAAAATTATCAA
*
14545956 ACCAAAATTATCAG
1 ACCAAAATTATCAA
14545970 ACCAAAAT
1 ACCAAAAT
14545978 CTAATATACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.56, C:0.19, G:0.03, T:0.22
Consensus pattern (14 bp):
ACCAAAATTATCAA
Found at i:14555889 original size:21 final size:21
Alignment explanation
Indices: 14555863--14556016 Score: 98
Period size: 21 Copynumber: 7.3 Consensus size: 21
14555853 CTGAAGGCTT
*
14555863 AACAGAAGCTCATGAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
* * * *
14555884 AACAGAAACCCATAA-AGGTTG
1 AACAGAAGCTCATAAGA-GCTA
* *
14555905 AACAGAAGCTCGTAAGAGCTG
1 AACAGAAGCTCATAAGAGCTA
* * * *
14555926 AAC-GACAACACATAAGGGTTA
1 AACAGA-AGCTCATAAGAGCTA
*
14555947 AACAGAAGCTCAAAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
* * * * *
14555968 AACATAAACTCATATGAGTTG
1 AACAGAAGCTCATAAGAGCTA
*
14555989 AACAGAAGCTTATGAA-AGCTA
1 AACAGAAGCTCAT-AAGAGCTA
14556010 AACAGAA
1 AACAGAA
14556017 AGTAAATACG
Statistics
Matches: 96, Mismatches: 32, Indels: 10
0.70 0.23 0.07
Matches are distributed among these distances:
20 3 0.03
21 89 0.93
22 4 0.04
ACGTcount: A:0.47, C:0.18, G:0.20, T:0.16
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTA
Found at i:14555923 original size:42 final size:42
Alignment explanation
Indices: 14555863--14556017 Score: 163
Period size: 42 Copynumber: 3.7 Consensus size: 42
14555853 CTGAAGGCTT
* *
14555863 AACAGAAGCTCATGAGAGCTAAACAGAAACCCATAAAGGTTG
1 AACAGAAGCTCATAAGAGCTAAACAGAAACACATAAAGGTTG
* * * *
14555905 AACAGAAGCTCGTAAGAGCTGAAC-GACAACACATAAGGGTTA
1 AACAGAAGCTCATAAGAGCTAAACAGA-AACACATAAAGGTTG
* * * *
14555947 AACAGAAGCTCAAAAGAGCTAAACATAAACTCAT-ATGAGTTG
1 AACAGAAGCTCATAAGAGCTAAACAGAAACACATAAAG-GTTG
*
14555989 AACAGAAGCTTATGAA-AGCTAAACAGAAA
1 AACAGAAGCTCAT-AAGAGCTAAACAGAAA
14556018 GTAAATACGA
Statistics
Matches: 93, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
41 4 0.04
42 86 0.92
43 3 0.03
ACGTcount: A:0.47, C:0.17, G:0.20, T:0.15
Consensus pattern (42 bp):
AACAGAAGCTCATAAGAGCTAAACAGAAACACATAAAGGTTG
Found at i:14557539 original size:21 final size:21
Alignment explanation
Indices: 14557509--14557623 Score: 133
Period size: 21 Copynumber: 5.5 Consensus size: 21
14557499 CGTGTTTTAC
14557509 TTTCTGTTCAACTCTTATGAG
1 TTTCTGTTCAACTCTTATGAG
* * *
14557530 TTTATGTTCAGCTCTTACGAG
1 TTTCTGTTCAACTCTTATGAG
*
14557551 CTTT-TGTTTAACTCTTATGAG
1 -TTTCTGTTCAACTCTTATGAG
*
14557572 TTTCTGTTCAACTCTTATAAG
1 TTTCTGTTCAACTCTTATGAG
* *
14557593 TTTCTGTTCAGCTCTTACGAG
1 TTTCTGTTCAACTCTTATGAG
* *
14557614 CTTCTATTCA
1 TTTCTGTTCA
14557624 GGTTTTGAGC
Statistics
Matches: 79, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
20 3 0.04
21 73 0.92
22 3 0.04
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.47
Consensus pattern (21 bp):
TTTCTGTTCAACTCTTATGAG
Found at i:14557624 original size:21 final size:21
Alignment explanation
Indices: 14557510--14557640 Score: 104
Period size: 21 Copynumber: 6.3 Consensus size: 21
14557500 GTGTTTTACT
* * *
14557510 TTCTGTTCAACTCTTATGAGT
1 TTCTGTTCAGCTCTTACGAGC
*
14557531 TTATGTTCAGCTCTTACGAGC
1 TTCTGTTCAGCTCTTACGAGC
* * * * *
14557552 TTTTGTTTAACTCTTATGAGT
1 TTCTGTTCAGCTCTTACGAGC
* ** *
14557573 TTCTGTTCAACTCTTATAAGT
1 TTCTGTTCAGCTCTTACGAGC
14557594 TTCTGTTCAGCTCTTACGAGC
1 TTCTGTTCAGCTCTTACGAGC
* * *
14557615 TTCTATTCAGGT-TT-TGAGC
1 TTCTGTTCAGCTCTTACGAGC
14557634 TTCTGTT
1 TTCTGTT
14557641 AACAATGTAC
Statistics
Matches: 90, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
19 10 0.11
20 2 0.02
21 78 0.87
ACGTcount: A:0.18, C:0.19, G:0.16, T:0.47
Consensus pattern (21 bp):
TTCTGTTCAGCTCTTACGAGC
Found at i:14560707 original size:11 final size:13
Alignment explanation
Indices: 14560687--14560718 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
14560677 AATAAATTAA
14560687 TAAAATATCAT-T
1 TAAAATATCATAT
14560699 TAAAA-ATCATAT
1 TAAAATATCATAT
14560711 TAAAATAT
1 TAAAATAT
14560719 TAATAAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 11 0.61
13 2 0.11
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAAATATCATAT
Found at i:14566008 original size:110 final size:106
Alignment explanation
Indices: 14565805--14566302 Score: 621
Period size: 110 Copynumber: 4.6 Consensus size: 106
14565795 TTATTATTCG
* *
14565805 ATTCGAGGAACGTGCCCTAAGGTGTTGGGTTGCGATTTCTCGTTCAACCAAATGGCTTAATATCC
1 ATTCGAGGAACATGCCCTAAGGTGCTGGGTT-CGATTTCTCGTTCAACCAAATGGCTTAATATCC
*
14565870 TTTTCAAAAATCTCAATATATGGCAATGTTTTGCGTTTGGAA
65 TTTTCAAAAATCTCAAAATATGGCAATGTTTTGCGTTTGGAA
* * *
14565912 ATTCAAGAAAACATGCCCTAAGGTGCTGGGTGTCGATCTTTCTCGTTCAACCAAACGGCTTAATA
1 ATTCGAG-GAACATGCCCTAAGGTGCTGGGT-TCGA--TTTCTCGTTCAACCAAATGGCTTAATA
* * *
14565977 TCTTTTTCAAAAATTTCAAAATAAT-GTAATGTTTTGCGTTTGGAA
62 TCCTTTTCAAAAATCTCAAAAT-ATGGCAATGTTTTGCGTTTGGAA
*
14566022 ATT-GAGGAACGTGCCCTAAGGTGCTGGGTTGCGATTTCTCGTTCAACCAAATGGCTTAATATCC
1 ATTCGAGGAACATGCCCTAAGGTGCTGGGTT-CGATTTCTCGTTCAACCAAATGGCTTAATATCC
*
14566086 TTTTCAAAAATCTCAAAATATGGCAATGTTTTGCGTTTGGAG
65 TTTTCAAAAATCTCAAAATATGGCAATGTTTTGCGTTTGGAA
* * * * *
14566128 ATTCGAGATAACATGCCCTAAGGTGCTGGATGTCGATTTTTCTCGTTCAACTAAATAGCTAAATA
1 ATTCGAG-GAACATGCCCTAAGGTGCTGGGT-TCGA--TTTCTCGTTCAACCAAATGGCTTAATA
*
14566193 TCC-TTTCAAAAAT-TATAAAATGA-GGCAATGTTTTGCGTTTGGAA
62 TCCTTTTCAAAAATCT-CAAAAT-ATGGCAATGTTTTGCGTTTGGAA
* * * * *
14566237 TTTCGAGGAACGTGCCCTAAGGTGTTGGGTTTCGATTTCTCGTTTAACCAAATTG-TTAAATATC
1 ATTCGAGGAACATGCCCTAAGGTGCTGGG-TTCGATTTCTCGTTCAACCAAATGGCTT-AATATC
14566301 CT
64 CT
14566303 CTTGAATTTT
Statistics
Matches: 340, Mismatches: 34, Indels: 34
0.83 0.08 0.08
Matches are distributed among these distances:
105 3 0.01
106 91 0.27
107 10 0.03
108 93 0.27
109 46 0.14
110 95 0.28
111 2 0.01
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (106 bp):
ATTCGAGGAACATGCCCTAAGGTGCTGGGTTCGATTTCTCGTTCAACCAAATGGCTTAATATCCT
TTTCAAAAATCTCAAAATATGGCAATGTTTTGCGTTTGGAA
Found at i:14566247 original size:216 final size:217
Alignment explanation
Indices: 14565805--14566302 Score: 779
Period size: 216 Copynumber: 2.3 Consensus size: 217
14565795 TTATTATTCG
14565805 ATTCGAGGAACGTGCCCTAAGGTGTTGGGTTGCGATTTCTCGTTCAACCAAATGGCTTAATATCC
1 ATTCGAGGAACGTGCCCTAAGGTGTTGGGTTGCGATTTCTCGTTCAACCAAATGGCTTAATATCC
*
14565870 TTTTCAAAAATCTCAATATATGGCAATGTTTTGCGTTTGGAAATTCAAGAAAACATGCCCTAAGG
66 TTTTCAAAAATCTCAAAATATGGCAATGTTTTGCGTTTGGAAATTCAAGAAAACATGCCCTAAGG
* * * *
14565935 TGCTGGGTGTCGATCTTTCTCGTTCAACCAAACGGCTTAATATCTTTTTCAAAAATTTCAAAATA
131 TGCTGGATGTCGATCTTTCTCGTTCAACCAAACAGCTAAATATCTCTTTCAAAAATTTCAAAATA
* *
14566000 ATGTAATGTTTTGCGTTTGGAA
196 AGGCAATGTTTTGCGTTTGGAA
*
14566022 ATT-GAGGAACGTGCCCTAAGGTGCTGGGTTGCGATTTCTCGTTCAACCAAATGGCTTAATATCC
1 ATTCGAGGAACGTGCCCTAAGGTGTTGGGTTGCGATTTCTCGTTCAACCAAATGGCTTAATATCC
* * *
14566086 TTTTCAAAAATCTCAAAATATGGCAATGTTTTGCGTTTGGAGATTCGAGATAACATGCCCTAAGG
66 TTTTCAAAAATCTCAAAATATGGCAATGTTTTGCGTTTGGAAATTCAAGAAAACATGCCCTAAGG
* * *
14566151 TGCTGGATGTCGATTTTTCTCGTTCAACTAAATAGCTAAATATC-CTTTCAAAAATTAT-AAAAT
131 TGCTGGATGTCGATCTTTCTCGTTCAACCAAACAGCTAAATATCTCTTTCAAAAATT-TCAAAAT
*
14566214 GAGGCAATGTTTTGCGTTTGGAA
195 AAGGCAATGTTTTGCGTTTGGAA
* * * *
14566237 TTTCGAGGAACGTGCCCTAAGGTGTTGGGTTTCGATTTCTCGTTTAACCAAATTG-TTAAATATC
1 ATTCGAGGAACGTGCCCTAAGGTGTTGGGTTGCGATTTCTCGTTCAACCAAATGGCTT-AATATC
14566301 CT
65 CT
14566303 CTTGAATTTT
Statistics
Matches: 258, Mismatches: 20, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
215 40 0.16
216 215 0.83
217 3 0.01
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.35
Consensus pattern (217 bp):
ATTCGAGGAACGTGCCCTAAGGTGTTGGGTTGCGATTTCTCGTTCAACCAAATGGCTTAATATCC
TTTTCAAAAATCTCAAAATATGGCAATGTTTTGCGTTTGGAAATTCAAGAAAACATGCCCTAAGG
TGCTGGATGTCGATCTTTCTCGTTCAACCAAACAGCTAAATATCTCTTTCAAAAATTTCAAAATA
AGGCAATGTTTTGCGTTTGGAA
Found at i:14578321 original size:46 final size:44
Alignment explanation
Indices: 14578172--14578812 Score: 243
Period size: 44 Copynumber: 14.7 Consensus size: 44
14578162 GACACTATCC
* * * *
14578172 TATCTCCCTGAAGTTACAGTGGAGCGGAT-TAA-AATAAAGGATCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCAAAGAAT-CA-GATCT
* ** * * * * *
14578216 TATCTCTCAAAAGTTACAGTAGAGTAGATC--A-CATCAGGTCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCAAAGAATCAGATCT
*
14578257 TATCT-CCTCGAGGTTACAGTGGAGCAGACCAAAGAATTTCAGATCT
1 TATCTCCCT-GAGGTTACAGTGGAGCAGATCAAAGAA--TCAGATCT
* * ** * *
14578303 TATCTCCCTAAGGTTACAGTGGAACAGATTGAAGCCA-GAGATCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCAAAG-AATCAGATCT
* * * * * *
14578347 TATCTCCTTGAGATTACAGCGGAGCAGATCGAAG-A-CACTATCC
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCAAAGAATCA-GATCT
* * * *
14578390 TATCTCCCTGAAGTTACAGTGGAGCGGAT-TAA-AATAAAGGATCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCAAAGAAT-CA-GATCT
* ** * * * * *
14578434 TATCTCTCAAAAGTTACAGTAGAGTAGATC--A-CATCAGGTCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCAAAGAATCAGATCT
* * *
14578475 TATCTCTCTGAGGTTATAGTGGAGCAGACCAAAGAATTTCAGATCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCAAAGAA--TCAGATCT
* ** * * *
14578521 TATCTCCCTGAGGTTACAGTGGAACAGATTGAAGCCA-GAGATTT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCAAAG-AATCAGATCT
* ** * * *
14578565 TATCTCCCTGAGATTACAGCAGAGCAGATCGAAG-A-CACTATCC
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCAAAGAATCA-GATCT
* * * *
14578608 TATCTCCCTGAAGTTACAATGGAG-AGGAT-TAA-AATAAAGGATCT
1 TATCTCCCTGAGGTTACAGTGGAGCA-GATCAAAGAAT-CA-GATCT
* ** * * * * *
14578652 TATCTCTCAAAAGTTACAGTAGAGTAGATC--A-CATCAGGTCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCAAAGAATCAGATCT
* * *
14578693 TATCTCTCTGAGGTTACAGTGGAGTAGACCGAAA-AATTTCAGATCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATC-AAAGAA--TCAGATCT
* ** * *
14578739 TATCTCCCTGAGGTTACAGTAGAGCAGATTGAAGCCA-GAGATCT
1 TATCTCCCTGAGGTTACAGTGGAGCAGATCAAAG-AATCAGATCT
* * * *
14578783 TATCTCCCTGAGATTATAGTAGAACAGATC
1 TATCTCCCTGAGGTTACAGTGGAGCAGATC
14578813 GCATCAAGTC
Statistics
Matches: 446, Mismatches: 117, Indels: 68
0.71 0.19 0.11
Matches are distributed among these distances:
40 1 0.00
41 81 0.18
42 14 0.03
43 62 0.14
44 180 0.40
45 3 0.01
46 99 0.22
47 6 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGAGGTTACAGTGGAGCAGATCAAAGAATCAGATCT
Found at i:14578528 original size:218 final size:218
Alignment explanation
Indices: 14578150--14578813 Score: 1179
Period size: 218 Copynumber: 3.0 Consensus size: 218
14578140 NNNNNNNNNN
14578150 GAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATC
1 GAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATC
14578215 TTATCTCTCAAAAGTTACAGTAGAGTAGATCACATCAGGTCTTATCTC-CTCGAGGTTACAGTGG
66 TTATCTCTCAAAAGTTACAGTAGAGTAGATCACATCAGGTCTTATCTCTCT-GAGGTTACAGTGG
*
14578279 AGCAGACCAAAGAATTTCAGATCTTATCTCCCTAAGGTTACAGTGGAACAGATTGAAGCCAGAGA
130 AGCAGACCAAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAACAGATTGAAGCCAGAGA
* *
14578344 TCTTATCTCCTTGAGATTACAGCG
195 TCTTATCTCCCTGAGATTACAGCA
14578368 GAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATC
1 GAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATC
*
14578433 TTATCTCTCAAAAGTTACAGTAGAGTAGATCACATCAGGTCTTATCTCTCTGAGGTTATAGTGGA
66 TTATCTCTCAAAAGTTACAGTAGAGTAGATCACATCAGGTCTTATCTCTCTGAGGTTACAGTGGA
14578498 GCAGACCAAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAACAGATTGAAGCCAGAGAT
131 GCAGACCAAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAACAGATTGAAGCCAGAGAT
*
14578563 TTTATCTCCCTGAGATTACAGCA
196 CTTATCTCCCTGAGATTACAGCA
* *
14578586 GAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAATGGAGAGGATTAAAATAAAGGATC
1 GAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATC
14578651 TTATCTCTCAAAAGTTACAGTAGAGTAGATCACATCAGGTCTTATCTCTCTGAGGTTACAGTGGA
66 TTATCTCTCAAAAGTTACAGTAGAGTAGATCACATCAGGTCTTATCTCTCTGAGGTTACAGTGGA
* * *
14578716 GTAGACCGAAA-AATTTCAGATCTTATCTCCCTGAGGTTACAGTAGAGCAGATTGAAGCCAGAGA
131 GCAGACC-AAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAACAGATTGAAGCCAGAGA
* *
14578780 TCTTATCTCCCTGAGATTATAGTA
195 TCTTATCTCCCTGAGATTACAGCA
*
14578804 GAACAGATCG
1 GAGCAGATCG
14578814 CATCAAGTCT
Statistics
Matches: 429, Mismatches: 15, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
218 424 0.99
219 5 0.01
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (218 bp):
GAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATC
TTATCTCTCAAAAGTTACAGTAGAGTAGATCACATCAGGTCTTATCTCTCTGAGGTTACAGTGGA
GCAGACCAAAGAATTTCAGATCTTATCTCCCTGAGGTTACAGTGGAACAGATTGAAGCCAGAGAT
CTTATCTCCCTGAGATTACAGCA
Found at i:14578865 original size:44 final size:43
Alignment explanation
Indices: 14578813--14578983 Score: 138
Period size: 44 Copynumber: 4.0 Consensus size: 43
14578803 AGAACAGATC
*
14578813 GCATCAAGTCTTATCTCCCTAAGTAGTAGTGGAGCAGACAGAA
1 GCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAA
* * * ***
14578856 GAAATCAAGTCCTATCTTCCC-AAGCAGTAGTGGAGTAGGTTGAA
1 G-CATCAAGTCTTATC-TCCCTAAGCAGTAGTGGAGCAGACAGAA
* * * **
14578900 CCTTGC-AGATTTTATCTCCCTAAGCAGTAACGGAGCAGATC----
1 GCAT-CAAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAGAA
*
14578941 GCATCAAGTCTTATCTCCCTAAGTAGTAGTGGAGCAGACAGAA
1 GCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAA
14578984 CCAATCCTAT
Statistics
Matches: 94, Mismatches: 23, Indels: 22
0.68 0.17 0.16
Matches are distributed among these distances:
39 1 0.01
40 27 0.29
41 4 0.04
43 8 0.09
44 50 0.53
45 4 0.04
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.25
Consensus pattern (43 bp):
GCATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACAGAA
Found at i:14581664 original size:317 final size:317
Alignment explanation
Indices: 14581074--14587448 Score: 12714
Period size: 317 Copynumber: 20.1 Consensus size: 317
14581064 TTTCTAAATA
* * *
14581074 AGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCG
1 AGGCAATATTT-GCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCG
14581139 TTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAAT
65 TTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAAT
14581204 TGAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTT
130 TGAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTT
14581269 CTTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGT
195 CTTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGT
14581334 TGGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
260 TGGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14581392 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14581457 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14581522 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14581587 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14581652 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14581709 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14581774 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14581839 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14581904 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14581969 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14582026 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14582091 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14582156 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14582221 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14582286 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14582343 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14582408 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14582473 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14582538 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14582603 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14582660 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14582725 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14582790 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14582855 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14582920 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14582977 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14583042 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14583107 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14583172 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14583237 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14583294 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14583359 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14583424 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14583489 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14583554 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14583611 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14583676 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14583741 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14583806 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14583871 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14583928 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14583993 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14584058 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14584123 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14584188 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14584245 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14584310 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14584375 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14584440 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14584505 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14584562 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14584627 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14584692 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14584757 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14584822 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14584879 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14584944 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14585009 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14585074 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14585139 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14585196 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14585261 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14585326 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14585391 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14585456 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14585513 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14585578 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14585643 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14585708 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14585773 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14585830 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14585895 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14585960 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14586025 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14586090 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14586147 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14586212 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14586277 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14586342 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14586407 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14586464 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14586529 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14586594 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14586659 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14586724 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14586781 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14586846 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14586911 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14586976 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14587041 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14587098 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
14587163 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
66 TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
14587228 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
131 GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
14587293 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
196 TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
14587358 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
261 GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
14587415 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACG
1 AGGCAATATTTGCGTTTGGAAAATTGAGAAAACG
14587449 AACAAAAATC
Statistics
Matches: 6054, Mismatches: 3, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
317 6043 1.00
318 11 0.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (317 bp):
AGGCAATATTTGCGTTTGGAAAATTGAGAAAACGTGCCCTAACGTGTTGGGTTTCGACTTCTCGT
TCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTGAGGCAATATTTGCGTTTGGAAAATT
GAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTTCTCGTTCGACCAAATAGCCAAATATCCTTC
TTAAACTTTTAAAATAAGGCAATATTTCGCATTTGGAAAATCGAGGAAACGTGCCCTAACGTGTT
GGGTTTCGACTTCTCGTTCGACCAAATAGCCAAATATCCTTTTAAAATTTCAAAGTG
Found at i:14593460 original size:8 final size:8
Alignment explanation
Indices: 14593441--14593547 Score: 56
Period size: 8 Copynumber: 11.8 Consensus size: 8
14593431 AAAAGAAGTT
14593441 TTAATA-A
1 TTAATACA
14593448 TTAATACA
1 TTAATACA
14593456 TTAATATAACA
1 TT-A-AT-ACA
14593467 TGATATATAACA
1 T--TA-ATA-CA
14593479 TTAATACA
1 TTAATACA
14593487 TTAATATAACA
1 TT-A-AT-ACA
14593498 TTAATACA
1 TTAATACA
*
14593506 TTAATATAAA
1 TT-A-ATACA
14593516 GTTTTAATA-A
1 ---TTAATACA
14593526 TTAATACA
1 TTAATACA
14593534 TTAATACA
1 TTAATACA
14593542 TTAATA
1 TTAATA
14593548 TAACATTAAT
Statistics
Matches: 83, Mismatches: 1, Indels: 31
0.72 0.01 0.27
Matches are distributed among these distances:
7 12 0.14
8 27 0.33
9 8 0.10
10 12 0.14
11 13 0.16
12 8 0.10
13 3 0.04
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.39
Consensus pattern (8 bp):
TTAATACA
Found at i:14593495 original size:19 final size:19
Alignment explanation
Indices: 14593471--14593560 Score: 118
Period size: 19 Copynumber: 4.8 Consensus size: 19
14593461 ATAACATGAT
14593471 ATATAACATTAATACATTA
1 ATATAACATTAATACATTA
14593490 ATATAACATTAATACATTA
1 ATATAACATTAATACATTA
14593509 ATATAA-AGTTTTAATA-ATT-
1 ATATAACA---TTAATACATTA
14593528 A-AT-ACATTAATACATTA
1 ATATAACATTAATACATTA
14593545 ATATAACATTAATACA
1 ATATAACATTAATACA
14593561 AGCTTACAAT
Statistics
Matches: 63, Mismatches: 0, Indels: 16
0.80 0.00 0.20
Matches are distributed among these distances:
15 6 0.10
16 3 0.05
17 2 0.03
18 6 0.10
19 37 0.59
20 3 0.05
21 6 0.10
ACGTcount: A:0.52, C:0.09, G:0.01, T:0.38
Consensus pattern (19 bp):
ATATAACATTAATACATTA
Found at i:14593541 original size:36 final size:36
Alignment explanation
Indices: 14593436--14593550 Score: 119
Period size: 36 Copynumber: 3.0 Consensus size: 36
14593426 TAATTAAAAG
*
14593436 AAGTTTTAATAATTAATACATTAATATAACATGATATATA
1 AAGTTTTAATAATTAATACATT-A-AT-ACATTA-ATATA
14593476 ACA---TTAATACATTAATATAACATTAATACATTAATATA
1 A-AGTTTTAATA-ATT-A-AT-ACATTAATACATTAATATA
14593514 AAGTTTTAATAATTAATACATTAATACATTAATATA
1 AAGTTTTAATAATTAATACATTAATACATTAATATA
14593550 A
1 A
14593551 CATTAATACA
Statistics
Matches: 66, Mismatches: 1, Indels: 20
0.76 0.01 0.23
Matches are distributed among these distances:
36 20 0.30
37 3 0.05
38 13 0.20
39 11 0.17
40 10 0.15
41 4 0.06
42 5 0.08
ACGTcount: A:0.51, C:0.07, G:0.03, T:0.39
Consensus pattern (36 bp):
AAGTTTTAATAATTAATACATTAATACATTAATATA
Found at i:14597897 original size:57 final size:58
Alignment explanation
Indices: 14597836--14597992 Score: 205
Period size: 57 Copynumber: 2.8 Consensus size: 58
14597826 ACATTAACCC
* * * **
14597836 ATAAGATTATACCAATTACA-ATTAAATCATTTCAATGACATATCCCA-TTATCAATTT
1 ATAAGGTTATACCAATTACACA-TAATTCATTTCAATGACATATCCAAGTTATCAATCG
* * *
14597893 ATAAGGTTATACTATTTACACATAATTCATTTCAATTACATAT-CAAGTTATCAATCG
1 ATAAGGTTATACCAATTACACATAATTCATTTCAATGACATATCCAAGTTATCAATCG
14597950 ATAAGGTTATACCAATTACACATAATTCATTTCAATG-CATATC
1 ATAAGGTTATACCAATTACACATAATTCATTTCAATGACATATC
14597993 AAATTATTTT
Statistics
Matches: 86, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
56 7 0.08
57 78 0.91
58 1 0.01
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.37
Consensus pattern (58 bp):
ATAAGGTTATACCAATTACACATAATTCATTTCAATGACATATCCAAGTTATCAATCG
Found at i:14610776 original size:45 final size:45
Alignment explanation
Indices: 14610712--14610805 Score: 161
Period size: 45 Copynumber: 2.1 Consensus size: 45
14610702 AACAGATATT
* *
14610712 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
*
14610757 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
14610802 CGGT
1 CGGT
14610806 TCACATAGTA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:14610985 original size:101 final size:101
Alignment explanation
Indices: 14610809--14610993 Score: 257
Period size: 101 Copynumber: 1.8 Consensus size: 101
14610799 GTTCGGTTCA
* * * * * *
14610809 CATAGTAGCCTGCATATAGTACTACGCATGTGACTATTACCATCCAATACACGTAGTAGCCTGCG
1 CATAGTAGCCTGCACATAGTACTACACATGCGACTATTA-CATCCAATACACATACTAGCCTGCA
14610874 CATAGTACTACACACGTGATCGAAACTATCTGGTATG
65 CATAGTACTACACACGTGATCGAAACTATCTGGTATG
**
14610911 CATAGTAGCCTGCACATAGTACTACACATGCGACCT-TT-CATTCCGGTACACATACTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGA-CTATTACA-TCCAATACACATACTAGCCTGC
14610974 ACATAGTACTACACACGTGA
64 ACATAGTACTACACACGTGA
14610994 CCATCACTTT
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
100 2 0.03
101 37 0.51
102 32 0.44
103 2 0.03
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.25
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACTATTACATCCAATACACATACTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACTATCTGGTATG
Found at i:14611016 original size:101 final size:101
Alignment explanation
Indices: 14610808--14611029 Score: 225
Period size: 101 Copynumber: 2.2 Consensus size: 101
14610798 TGTTCGGTTC
* * * * *
14610808 ACATAGTAGCCTGCATATAGTACTACGCATGTGACTATTACCATCCAATACACGTAGTAGCCTGC
1 ACATAGTAGCCTGCACATAGTACTACACATGCGACTATTA-CATCCAATACACATACTAGCCTGC
* * **
14610873 GCATAGTACTACACACGTGATCGAAACTATCTGGTAT
65 ACATAGTACTACACACGTGATCCAAACTATCACGTAT
* **
14610910 GCATAGTAGCCTGCACATAGTACTACACATGCGACCT-TT-CATTCCGGTACACATACTAGCCTG
1 ACATAGTAGCCTGCACATAGTACTACACATGCGA-CTATTACA-TCCAATACACATACTAGCCTG
* * * *
14610973 CACATAGTACTACACACGTGA-CCATCACTTTCACTTTT
64 CACATAGTACTACACACGTGATCCA-AACTATCACGTAT
* *
14611011 ACATAGTGGCCTACACATA
1 ACATAGTAGCCTGCACATA
14611030 ATCCATGCCA
Statistics
Matches: 98, Mismatches: 19, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
100 4 0.04
101 60 0.61
102 32 0.33
103 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (101 bp):
ACATAGTAGCCTGCACATAGTACTACACATGCGACTATTACATCCAATACACATACTAGCCTGCA
CATAGTACTACACACGTGATCCAAACTATCACGTAT
Found at i:14612991 original size:25 final size:25
Alignment explanation
Indices: 14612948--14612999 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
14612938 TGTTTATAAA
14612948 AATATATAAATAATAATTA-ACATAG
1 AATATATAAATAATAATTAGA-ATAG
*
14612973 AATATAT-ACTAATATATTAGAATAG
1 AATATATAAATAATA-ATTAGAATAG
14612998 AA
1 AA
14613000 AAAGAATTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 6 0.25
25 17 0.71
26 1 0.04
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.33
Consensus pattern (25 bp):
AATATATAAATAATAATTAGAATAG
Found at i:14614158 original size:8 final size:8
Alignment explanation
Indices: 14614145--14614170 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
14614135 AGGCTAGGTG
14614145 TTGGGCCA
1 TTGGGCCA
14614153 TTGGGCCA
1 TTGGGCCA
14614161 TTGGGCCA
1 TTGGGCCA
14614169 TT
1 TT
14614171 AGGTTTAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.12, C:0.23, G:0.35, T:0.31
Consensus pattern (8 bp):
TTGGGCCA
Found at i:14616768 original size:16 final size:15
Alignment explanation
Indices: 14616741--14616770 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
14616731 AAATTCACAT
14616741 TTATACTATATATAA
1 TTATACTATATATAA
14616756 TTATACATATATATA
1 TTATAC-TATATATA
14616771 TATATATTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (15 bp):
TTATACTATATATAA
Found at i:14619982 original size:54 final size:55
Alignment explanation
Indices: 14619862--14619982 Score: 131
Period size: 54 Copynumber: 2.2 Consensus size: 55
14619852 GAGTTGGGCA
* * *
14619862 ACACGGCCGTGTCGCAGGCCATGTACGAGACCGTGTAACTCTCTAACTTATGACAC
1 ACACGGTCGTGTCGCAGGCCATGTACGAGACCGTGTAACACACTAACTTA-GACAC
* * * * * *
14619918 ACA-GCT-GTGTCGCAGGTCGTGTGCTAGGCCGTGTAACACACTAACTTA-ACAC
1 ACACGGTCGTGTCGCAGGCCATGTACGAGACCGTGTAACACACTAACTTAGACAC
14619970 ACACGGTCGTGTC
1 ACACGGTCGTGTC
14619983 TCAAACCGTG
Statistics
Matches: 53, Mismatches: 10, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
52 7 0.13
53 2 0.04
54 40 0.75
55 1 0.02
56 3 0.06
ACGTcount: A:0.24, C:0.29, G:0.25, T:0.22
Consensus pattern (55 bp):
ACACGGTCGTGTCGCAGGCCATGTACGAGACCGTGTAACACACTAACTTAGACAC
Found at i:14621621 original size:27 final size:26
Alignment explanation
Indices: 14621574--14621628 Score: 74
Period size: 27 Copynumber: 2.1 Consensus size: 26
14621564 TAGGTTAATT
* *
14621574 TTAAAATAAATAATATGTAAAATAAC
1 TTAAAATAAATAACATATAAAATAAC
*
14621600 TTAAAATAAAATGACATATAAAATAAC
1 TTAAAAT-AAATAACATATAAAATAAC
14621627 TT
1 TT
14621629 GAAACAGTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.60, C:0.05, G:0.04, T:0.31
Consensus pattern (26 bp):
TTAAAATAAATAACATATAAAATAAC
Found at i:14630414 original size:463 final size:464
Alignment explanation
Indices: 14629783--14630711 Score: 1792
Period size: 464 Copynumber: 2.0 Consensus size: 464
14629773 GCCTAAAAAT
*
14629783 TTATAAAAATTATGAAATTACCCCACTGGTAATTTTTGTGAAATTTATTTTGATTCAAAGCGAGC
1 TTATAAAAATTATGAAATTACCCCACTAGTAATTTTTGTGAAATTTATTTTGATTCAAAGCGAGC
*
14629848 CCACACTCGGAAGATGTGAGCTTAAGGATTGCGGAGAAGACTACTCAGTTGAAGCGTTCATCTTA
66 CCACACTCAGAAGATGTGAGCTTAAGGATTGCGGAGAAGACTACTCAGTTGAAGCGTTCATCTTA
14629913 GACGAATCGAAAAGGTACAATTTTGTGATAATGTTTCTTACTTTAGATATCACAATCAAGTTCTT
131 GACGAATCGAAAAGGTACAATTTTGTGATAATGTTTCTTACTTTAGATATCACAATCAAGTTCTT
14629978 GTTTTAG-AAAAAAATTAAAACTCTAGTTTTTCCCTAAATTTA-TTTTCTGCTGCCTTTTCCAAA
196 GTTTTAGAAAAAAAATTAAAACTCTAGTTTTTCCCTAAATTTATTTTTCTGCTG-CTTTTCCAAA
14630041 CCCGATTTTCCAACAAAAATTCTCTCAACAAAAACTTTCCATTTTGATAGACTCCCCTTCAAGAA
260 CCCGATTTTCCAACAAAAATTCTCTCAACAAAAACTTTCCATTTTGATAGACTCCCCTTCAAGAA
14630106 TAACTTCCAACATCATCAAGCATCGTTTCTTTTCTTCCCCTTTTTGGTCAAAAAATGCCAAACTA
325 TAACTTCCAACATCATCAAGCATCGTTTCTTTTCTTCCCCTTTTTGGTCAAAAAATGCCAAACTA
14630171 TTCTTCATCAAGCAAGGCATGAAGATAATGCATTCAAGCCTTCTATTTATCAACTAACTTCCTCA
390 TTCTTCATCAAGCAAGGCATGAAGATAATGCATTCAAGCCTTCTATTTATCAACTAACTTCCTCA
14630236 CAACTTTGGC
455 CAACTTTGGC
14630246 TTATAAAAATTATGAAATTACCCCACTAGTAATTTTTGTGAAATTTATTTTGATTCAAAGCGAGC
1 TTATAAAAATTATGAAATTACCCCACTAGTAATTTTTGTGAAATTTATTTTGATTCAAAGCGAGC
14630311 CCACACTCAGAAGATGTGAGCTTAAGGATTGCGGAGAAGACTACTCAGTTGAAGCGTTCATCTTA
66 CCACACTCAGAAGATGTGAGCTTAAGGATTGCGGAGAAGACTACTCAGTTGAAGCGTTCATCTTA
*
14630376 GACGAATCGAAAAGGTACAATTTTGATTA-AATGTTTCTTACTTTAGATATCACAATCAAGTTCT
131 GACGAATCGAAAAGGTACAATTTTG-TGATAATGTTTCTTACTTTAGATATCACAATCAAGTTCT
14630440 TGTTTTAGAAAAAAAATTAAAACTCTAGTTTTTCCCTAAATTTATTTTTCTGCTGCTTTTCCAAA
195 TGTTTTAGAAAAAAAATTAAAACTCTAGTTTTTCCCTAAATTTATTTTTCTGCTGCTTTTCCAAA
14630505 CCCGATTTTCCAACAAAAATTCTCTCAACAAAAACTTTCCATTTTGATAGACTCCCCTTCAAGAA
260 CCCGATTTTCCAACAAAAATTCTCTCAACAAAAACTTTCCATTTTGATAGACTCCCCTTCAAGAA
14630570 TAACTTCCAACATCATCAAGCATCGTTTCTTTTCTTCCCCTTTTTGGTCAAAAAATGCCAAACTA
325 TAACTTCCAACATCATCAAGCATCGTTTCTTTTCTTCCCCTTTTTGGTCAAAAAATGCCAAACTA
14630635 TTCTTCATCAAGCAAGGCATGAAGATAATGCATTCAAGCCTTCTATTTATCAACTAACTTCCTCA
390 TTCTTCATCAAGCAAGGCATGAAGATAATGCATTCAAGCCTTCTATTTATCAACTAACTTCCTCA
14630700 CAACTTTGGC
455 CAACTTTGGC
14630710 TT
1 TT
14630712 CAACTTGCAG
Statistics
Matches: 460, Mismatches: 3, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
463 196 0.43
464 254 0.55
465 10 0.02
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (464 bp):
TTATAAAAATTATGAAATTACCCCACTAGTAATTTTTGTGAAATTTATTTTGATTCAAAGCGAGC
CCACACTCAGAAGATGTGAGCTTAAGGATTGCGGAGAAGACTACTCAGTTGAAGCGTTCATCTTA
GACGAATCGAAAAGGTACAATTTTGTGATAATGTTTCTTACTTTAGATATCACAATCAAGTTCTT
GTTTTAGAAAAAAAATTAAAACTCTAGTTTTTCCCTAAATTTATTTTTCTGCTGCTTTTCCAAAC
CCGATTTTCCAACAAAAATTCTCTCAACAAAAACTTTCCATTTTGATAGACTCCCCTTCAAGAAT
AACTTCCAACATCATCAAGCATCGTTTCTTTTCTTCCCCTTTTTGGTCAAAAAATGCCAAACTAT
TCTTCATCAAGCAAGGCATGAAGATAATGCATTCAAGCCTTCTATTTATCAACTAACTTCCTCAC
AACTTTGGC
Found at i:14634814 original size:16 final size:17
Alignment explanation
Indices: 14634787--14634835 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
14634777 GTCTAAAATT
*
14634787 ATATGTATTAATTTATA
1 ATATATATTAATTTATA
14634804 ATATA-ATTAATTT-TA
1 ATATATATTAATTTATA
*
14634819 ATTTATATTCAATTTAT
1 ATATATATT-AATTTAT
14634836 TTTGGGTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
15 6 0.22
16 11 0.41
17 9 0.33
18 1 0.04
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.55
Consensus pattern (17 bp):
ATATATATTAATTTATA
Found at i:14634903 original size:14 final size:14
Alignment explanation
Indices: 14634884--14634910 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
14634874 GTGGTCTAGT
14634884 TGAACTGAACCGAG
1 TGAACTGAACCGAG
14634898 TGAACTGAACCGA
1 TGAACTGAACCGA
14634911 CCAAGAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.26, T:0.15
Consensus pattern (14 bp):
TGAACTGAACCGAG
Found at i:14638600 original size:391 final size:391
Alignment explanation
Indices: 14637879--14638660 Score: 1564
Period size: 391 Copynumber: 2.0 Consensus size: 391
14637869 GTACTTATAG
14637879 TATTCGATTTAATCCATAATTCATATTTGTGTAAAATTAAAAAATTACCCCTAACATTTTAACTT
1 TATTCGATTTAATCCATAATTCATATTTGTGTAAAATTAAAAAATTACCCCTAACATTTTAACTT
14637944 TTTACAATTTAGTCCTTAAGCTCCTAATTTGAAATTTAACCATTTTAATCCTCCATACTAGCTAG
66 TTTACAATTTAGTCCTTAAGCTCCTAATTTGAAATTTAACCATTTTAATCCTCCATACTAGCTAG
14638009 CCGAATTTCATAGGAACTCAAACCAACCCACTTAAATCATTATTTCATAATTTTACCATGAAATT
131 CCGAATTTCATAGGAACTCAAACCAACCCACTTAAATCATTATTTCATAATTTTACCATGAAATT
14638074 TTACTATTTTCTCAAATAAATTCCTAAATGCAATTTCATCAAAATCACTTAACAATACATGCTTA
196 TTACTATTTTCTCAAATAAATTCCTAAATGCAATTTCATCAAAATCACTTAACAATACATGCTTA
14638139 TTTTACAACCAAGATTAATAATCCATCAATTAACATCACAAACACATCAAACTCATTCATGAAAA
261 TTTTACAACCAAGATTAATAATCCATCAATTAACATCACAAACACATCAAACTCATTCATGAAAA
14638204 GCCCCTCAATCTTTAACAATTTTGCAAATTAACCCCTAGGCTAGCTAGATTAAGCTAAAACGAAC
326 GCCCCTCAATCTTTAACAATTTTGCAAATTAACCCCTAGGCTAGCTAGATTAAGCTAAAACGAAC
14638269 T
391 T
14638270 TATTCGATTTAATCCATAATTCATATTTGTGTAAAATTAAAAAATTACCCCTAACATTTTAACTT
1 TATTCGATTTAATCCATAATTCATATTTGTGTAAAATTAAAAAATTACCCCTAACATTTTAACTT
14638335 TTTACAATTTAGTCCTTAAGCTCCTAATTTGAAATTTAACCATTTTAATCCTCCATACTAGCTAG
66 TTTACAATTTAGTCCTTAAGCTCCTAATTTGAAATTTAACCATTTTAATCCTCCATACTAGCTAG
14638400 CCGAATTTCATAGGAACTCAAACCAACCCACTTAAATCATTATTTCATAATTTTACCATGAAATT
131 CCGAATTTCATAGGAACTCAAACCAACCCACTTAAATCATTATTTCATAATTTTACCATGAAATT
14638465 TTACTATTTTCTCAAATAAATTCCTAAATGCAATTTCATCAAAATCACTTAACAATACATGCTTA
196 TTACTATTTTCTCAAATAAATTCCTAAATGCAATTTCATCAAAATCACTTAACAATACATGCTTA
14638530 TTTTACAACCAAGATTAATAATCCATCAATTAACATCACAAACACATCAAACTCATTCATGAAAA
261 TTTTACAACCAAGATTAATAATCCATCAATTAACATCACAAACACATCAAACTCATTCATGAAAA
14638595 GCCCCTCAATCTTTAACAATTTTGCAAATTAACCCCTAGGCTAGCTAGATTAAGCTAAAACGAAC
326 GCCCCTCAATCTTTAACAATTTTGCAAATTAACCCCTAGGCTAGCTAGATTAAGCTAAAACGAAC
14638660 T
391 T
14638661 CAAAAACATA
Statistics
Matches: 391, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
391 391 1.00
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.34
Consensus pattern (391 bp):
TATTCGATTTAATCCATAATTCATATTTGTGTAAAATTAAAAAATTACCCCTAACATTTTAACTT
TTTACAATTTAGTCCTTAAGCTCCTAATTTGAAATTTAACCATTTTAATCCTCCATACTAGCTAG
CCGAATTTCATAGGAACTCAAACCAACCCACTTAAATCATTATTTCATAATTTTACCATGAAATT
TTACTATTTTCTCAAATAAATTCCTAAATGCAATTTCATCAAAATCACTTAACAATACATGCTTA
TTTTACAACCAAGATTAATAATCCATCAATTAACATCACAAACACATCAAACTCATTCATGAAAA
GCCCCTCAATCTTTAACAATTTTGCAAATTAACCCCTAGGCTAGCTAGATTAAGCTAAAACGAAC
T
Found at i:14639355 original size:9 final size:9
Alignment explanation
Indices: 14639334--14639382 Score: 55
Period size: 9 Copynumber: 5.4 Consensus size: 9
14639324 TTAATAAATG
14639334 TTTTATATAT
1 TTTTATAT-T
14639344 TTTTATATT
1 TTTTATATT
*
14639353 TTTTGTATT
1 TTTTATATT
*
14639362 TTTTATA-A
1 TTTTATATT
*
14639370 TTTTATAAT
1 TTTTATATT
14639379 TTTT
1 TTTT
14639383 GCAAGTATTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
8 7 0.21
9 19 0.56
10 8 0.24
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (9 bp):
TTTTATATT
Found at i:14639368 original size:26 final size:26
Alignment explanation
Indices: 14639334--14639383 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
14639324 TTAATAAATG
* *
14639334 TTTTATATATTTTTATATTTTTTGTA
1 TTTTATATAATTTTATAATTTTTGTA
*
14639360 TTTTTTATAATTTTATAATTTTTG
1 TTTTATATAATTTTATAATTTTTG
14639384 CAAGTATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (26 bp):
TTTTATATAATTTTATAATTTTTGTA
Found at i:14639372 original size:19 final size:19
Alignment explanation
Indices: 14639319--14639382 Score: 60
Period size: 19 Copynumber: 3.3 Consensus size: 19
14639309 AAATTTCCAA
*
14639319 ATTTTTTAATAAATGTTTTAT
1 ATTTTTT-AT-AATTTTTTAT
*
14639340 ATATTTTTAT-ATTTTTTGT
1 AT-TTTTTATAATTTTTTAT
*
14639359 ATTTTTTATAATTTTATA-
1 ATTTTTTATAATTTTTTAT
14639377 ATTTTT
1 ATTTTT
14639383 GCAAGTATTT
Statistics
Matches: 37, Mismatches: 4, Indels: 7
0.77 0.08 0.15
Matches are distributed among these distances:
18 13 0.35
19 15 0.41
21 4 0.11
22 5 0.14
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (19 bp):
ATTTTTTATAATTTTTTAT
Found at i:14639372 original size:27 final size:28
Alignment explanation
Indices: 14639334--14639410 Score: 77
Period size: 28 Copynumber: 2.8 Consensus size: 28
14639324 TTAATAAATG
* * *
14639334 TTTTATATATTTTTATATTTTTTG-TATT
1 TTTTATA-ATTTTTATAATTTTTGCAAGT
14639362 TTTTATAA-TTTTATAATTTTTGCAAGT
1 TTTTATAATTTTTATAATTTTTGCAAGT
* * *
14639389 ATTTATAATTTTAATACTTTTT
1 TTTTATAATTTTTATAATTTTT
14639411 AAATAAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
26 13 0.32
27 10 0.24
28 18 0.44
ACGTcount: A:0.27, C:0.03, G:0.04, T:0.66
Consensus pattern (28 bp):
TTTTATAATTTTTATAATTTTTGCAAGT
Found at i:14649234 original size:31 final size:31
Alignment explanation
Indices: 14649192--14649257 Score: 105
Period size: 31 Copynumber: 2.1 Consensus size: 31
14649182 CTTAAATATA
* *
14649192 ATAAATTATATTTATATAATTTAATATAATG
1 ATAAATGATATTTAAATAATTTAATATAATG
*
14649223 ATAAATGATATTTAAATAATTTGATATAATG
1 ATAAATGATATTTAAATAATTTAATATAATG
14649254 ATAA
1 ATAA
14649258 TTTAATATTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (31 bp):
ATAAATGATATTTAAATAATTTAATATAATG
Found at i:14649257 original size:16 final size:16
Alignment explanation
Indices: 14649207--14649265 Score: 59
Period size: 16 Copynumber: 3.8 Consensus size: 16
14649197 TTATATTTAT
14649207 ATAATTTAATATAATG
1 ATAATTTAATATAATG
* * *
14649223 ATAAATGATATTTAA--
1 ATAATTTA-ATATAATG
*
14649238 ATAATTTGATATAATG
1 ATAATTTAATATAATG
14649254 ATAATTTAATAT
1 ATAATTTAATAT
14649266 TTTTTAGATT
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
14 5 0.16
15 5 0.16
16 17 0.53
17 5 0.16
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (16 bp):
ATAATTTAATATAATG
Found at i:14650111 original size:39 final size:39
Alignment explanation
Indices: 14650068--14650145 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
14650058 TAGTTATAAT
14650068 CACGATATGAGTGGTTTCATATAAAATCAATATCTAAAC
1 CACGATATGAGTGGTTTCATATAAAATCAATATCTAAAC
*
14650107 CACGATATGAGTGGTTTCATATAAAATTAATATCTAAAC
1 CACGATATGAGTGGTTTCATATAAAATCAATATCTAAAC
14650146 ATCATTAAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.32
Consensus pattern (39 bp):
CACGATATGAGTGGTTTCATATAAAATCAATATCTAAAC
Found at i:14650519 original size:17 final size:17
Alignment explanation
Indices: 14650497--14650529 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14650487 ATAATTTATT
*
14650497 TTTCTTTTTATAAAATA
1 TTTCTTTTTAAAAAATA
14650514 TTTCTTTTTAAAAAAT
1 TTTCTTTTTAAAAAAT
14650530 CGTGGCTCCG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTCTTTTTAAAAAATA
Found at i:14655486 original size:96 final size:96
Alignment explanation
Indices: 14655383--14655696 Score: 462
Period size: 96 Copynumber: 3.3 Consensus size: 96
14655373 AACAGCTACC
* * *
14655383 TTTATTTGA-TTTTTCCTTAAAAACCCTAAATACTAAA-CCTCAAACTAATTTTTTTAAAATTTA
1 TTTATTTGATTTTTTCCTTCAAAACCCTAAACACTAAACCCT-AATCTAA-TTTTTTAAAATTTA
14655446 TAATTAATTTACTCAAGTAACCCTAAACCCTAA
64 TAATTAATTTACTCAAGTAACCCTAAACCCTAA
* *
14655479 TTTATTTGATTTTTTTCTTCAAAATCCTAAACACTAAACCCTAATCTAATTTTTTAAAATTTATA
1 TTTATTTGATTTTTTCCTTCAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAAAATTTATA
14655544 ATTAATTTACTCAAGTAACCCTAAACCCTAA
66 ATTAATTTACTCAAGTAACCCTAAACCCTAA
* *
14655575 TTTATTTGATTTTTTTCTTCAAAATCCTAAACACTAAACCCTAATCTAATTTTTTAAAATTTATA
1 TTTATTTGATTTTTTCCTTCAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAAAATTTATA
* * *
14655640 ATTAATTTAATTAAGAAACCCTAAACCC---
66 ATTAATTTACTCAAGTAACCCTAAACCCTAA
*
14655668 -TTATTTAATTTTTTCCTT-AAAACCCTAAA
1 TTTATTTGATTTTTTCCTTCAAAACCCTAAA
14655697 ATCTAAAAAC
Statistics
Matches: 205, Mismatches: 11, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
91 10 0.05
92 16 0.08
96 146 0.71
97 30 0.15
98 3 0.01
ACGTcount: A:0.38, C:0.18, G:0.02, T:0.42
Consensus pattern (96 bp):
TTTATTTGATTTTTTCCTTCAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAAAATTTATA
ATTAATTTACTCAAGTAACCCTAAACCCTAA
Found at i:14655518 original size:44 final size:44
Alignment explanation
Indices: 14655468--14655619 Score: 130
Period size: 44 Copynumber: 3.3 Consensus size: 44
14655458 TCAAGTAACC
14655468 CTAAACCCTAATTTATTTGATTTTTTTCTTCAAAATCCTAAACA
1 CTAAACCCTAATTTATTTGATTTTTTTCTTCAAAATCCTAAACA
* * ** * *
14655512 CTAAACCCTAATCTAATTT--TTTAAAATTTATAATT-AATTTACTCAAGTAACC
1 CTAAACCCTAAT-TTATTTGATTT----TTT-T-CTTCAAAAT-C-CTA--AACA
14655564 CTAAACCCTAATTTATTTGATTTTTTTCTTCAAAATCCTAAACA
1 CTAAACCCTAATTTATTTGATTTTTTTCTTCAAAATCCTAAACA
14655608 CTAAACCCTAAT
1 CTAAACCCTAAT
14655620 CTAATTTTTT
Statistics
Matches: 82, Mismatches: 12, Indels: 28
0.67 0.10 0.23
Matches are distributed among these distances:
43 3 0.04
44 27 0.33
45 5 0.06
46 2 0.02
47 6 0.07
48 8 0.10
49 6 0.07
50 2 0.02
51 5 0.06
52 15 0.18
53 3 0.04
ACGTcount: A:0.37, C:0.20, G:0.02, T:0.41
Consensus pattern (44 bp):
CTAAACCCTAATTTATTTGATTTTTTTCTTCAAAATCCTAAACA
Found at i:14655571 original size:52 final size:51
Alignment explanation
Indices: 14655512--14655681 Score: 135
Period size: 52 Copynumber: 3.4 Consensus size: 51
14655502 ATCCTAAACA
14655512 CTAAACCCTAATCTAATTTTTTAAAATTTATAATTAATTTACTCAAGTAACC
1 CTAAACCCTAATCTAATTTTTTAAAATTTATAATTAATTTACTCAAG-AACC
* * ** * *
14655564 CTAAACCCTAAT-TTATTTGATTT----TTT-T-CTTCAAAAT-C-CTA-AACA
1 CTAAACCCTAATCTAATTT--TTTAAAATTTATAATT-AATTTACTCAAGAACC
* *
14655608 CTAAACCCTAATCTAATTTTTTAAAATTTATAATTAATTTAATTAAGAAACC
1 CTAAACCCTAATCTAATTTTTTAAAATTTATAATTAATTTACTCAAG-AACC
* *
14655660 CTAAACCCTTATTTAATTTTTT
1 CTAAACCCTAATCTAATTTTTT
14655682 CCTTAAAACC
Statistics
Matches: 88, Mismatches: 16, Indels: 28
0.67 0.12 0.21
Matches are distributed among these distances:
43 3 0.03
44 15 0.17
45 5 0.06
46 2 0.02
47 6 0.07
48 8 0.09
49 5 0.06
50 1 0.01
51 5 0.06
52 35 0.40
53 3 0.03
ACGTcount: A:0.38, C:0.17, G:0.02, T:0.43
Consensus pattern (51 bp):
CTAAACCCTAATCTAATTTTTTAAAATTTATAATTAATTTACTCAAGAACC
Found at i:14656205 original size:61 final size:60
Alignment explanation
Indices: 14656133--14656300 Score: 154
Period size: 57 Copynumber: 2.8 Consensus size: 60
14656123 AATATGATAT
14656133 TAAATTGATTATAACTAATAATTTTATAATATAATTAAAAAGTTGATGATAAGTAATATTA
1 TAAATTGATTATAACTAATAATTTTATAATATAA-TAAAAAGTTGATGATAAGTAATATTA
** * *
14656194 TAAATTGATTATTCCTTAA-AATTATTA-AA-ATAAAAAGAAAATTGA--A-AAGTAATATTA
1 TAAATTGATTATAAC-TAATAATT-TTATAATATAATAA-AAAGTTGATGATAAGTAATATTA
* * * *
14656251 TAACATGGA--ATAAATAATAAGTCTATAATATAAGTAAAAAGTTGATGATA
1 TAA-ATTGATTATAACTAATAATTTTATAATATAA-TAAAAAGTTGATGATA
14656301 TCATTGTTCC
Statistics
Matches: 84, Mismatches: 12, Indels: 23
0.71 0.10 0.19
Matches are distributed among these distances:
55 5 0.06
56 7 0.08
57 25 0.30
58 7 0.08
59 3 0.04
60 12 0.14
61 19 0.23
62 6 0.07
ACGTcount: A:0.52, C:0.03, G:0.10, T:0.36
Consensus pattern (60 bp):
TAAATTGATTATAACTAATAATTTTATAATATAATAAAAAGTTGATGATAAGTAATATTA
Found at i:14657273 original size:22 final size:22
Alignment explanation
Indices: 14657231--14657274 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
14657221 TTATTTAATC
*
14657231 AATTACTCTAATTAATTAAATT
1 AATTACTCTAATTAATAAAATT
*
14657253 AATTTCTC-AATTAAATAAAATT
1 AATTACTCTAATT-AATAAAATT
14657275 TTCAACTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (22 bp):
AATTACTCTAATTAATAAAATT
Found at i:14657815 original size:15 final size:15
Alignment explanation
Indices: 14657795--14657846 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
14657785 ACTACAAAAC
14657795 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
14657810 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
14657829 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
14657844 ATT
1 ATT
14657847 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:14660624 original size:13 final size:13
Alignment explanation
Indices: 14660606--14660631 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14660596 ATCAGGCTTG
14660606 TAATTAATTTTAA
1 TAATTAATTTTAA
14660619 TAATTAATTTTAA
1 TAATTAATTTTAA
14660632 CCCAATTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TAATTAATTTTAA
Found at i:14662365 original size:43 final size:43
Alignment explanation
Indices: 14662262--14662357 Score: 138
Period size: 43 Copynumber: 2.2 Consensus size: 43
14662252 AAACCTACAG
14662262 GGGACACACGGCCGTGTCGCATAGCCGTGTGTCACACATGGCT
1 GGGACACACGGCCGTGTCGCATAGCCGTGTGTCACACATGGCT
** * * * *
14662305 AAGACACACGGCCGTGTCGCATGGCTGTGTGTCATATATGGCT
1 GGGACACACGGCCGTGTCGCATAGCCGTGTGTCACACATGGCT
14662348 GGGACACACG
1 GGGACACACG
14662358 ATCGTGTCTT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.21, C:0.27, G:0.32, T:0.20
Consensus pattern (43 bp):
GGGACACACGGCCGTGTCGCATAGCCGTGTGTCACACATGGCT
Found at i:14663353 original size:30 final size:29
Alignment explanation
Indices: 14663314--14663596 Score: 146
Period size: 30 Copynumber: 9.5 Consensus size: 29
14663304 AATGGTTGTC
*
14663314 ACCATCCCTTTTCATAGTTCGATAGCCGA
1 ACCATCCCTTTTCATAGTTCGATAGTCGA
* * * *
14663343 AGCTATCCCTTTTCATATTTCGATGGTCGTC
1 A-CCATCCCTTTTCATAGTTCGATAGTCG-A
* *
14663374 TCCATCCCTTTTCATTGTT-GATAGTC-A
1 ACCATCCCTTTTCATAGTTCGATAGTCGA
** *
14663401 TCACCATCTGTTTTCATAATTCGATAG-CTGA
1 --ACCATCCCTTTTCATAGTTCGATAGTC-GA
* * ** *
14663432 AGCTATCCCTTTTCATATTTAAATGGTC-A
1 A-CCATCCCTTTTCATAGTTCGATAGTCGA
* * * *
14663461 TTACCATCCTTTTTCATAATTCGATAGCCAA
1 --ACCATCCCTTTTCATAGTTCGATAGTCGA
* * *
14663492 AGCTATCCCTTTTCATAGTTCGATGGTCGTC
1 A-CCATCCCTTTTCATAGTTCGATAGTCG-A
* * * *
14663523 ACCATCCTTTTTCATGGTT-GATGGTCGTC
1 ACCATCCCTTTTCATAGTTCGATAGTCG-A
* *
14663552 ACCATCCCTTTTCATATTTTGATAG-CTGA
1 ACCATCCCTTTTCATAGTTCGATAGTC-GA
*
14663581 AGCTATCCCTTTTCAT
1 A-CCATCCCTTTTCAT
14663597 TGGTCGATGA
Statistics
Matches: 191, Mismatches: 46, Indels: 33
0.71 0.17 0.12
Matches are distributed among these distances:
29 53 0.28
30 133 0.70
31 5 0.03
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (29 bp):
ACCATCCCTTTTCATAGTTCGATAGTCGA
Found at i:14663468 original size:89 final size:89
Alignment explanation
Indices: 14663312--14663477 Score: 244
Period size: 89 Copynumber: 1.9 Consensus size: 89
14663302 ACAATGGTTG
* ** *
14663312 TCACCATCCCTTTTCATAGTTCGATAGCCGAAGCTATCCCTTTTCATATTTCGATGGTCGTCTCC
1 TCACCATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCATATTTAAATGGTCATCTCC
14663377 ATCCCTTTTCATTGTTGATAGTCA
66 ATCCCTTTTCATTGTTGATAGTCA
** *
14663401 TCACCATCTGTTTTCATAATTCGATAGCTGAAGCTATCCCTTTTCATATTTAAATGGTCAT-TAC
1 TCACCATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCATATTTAAATGGTCATCT-C
*
14663465 CATCCTTTTTCAT
65 CATCCCTTTTCAT
14663478 AATTCGATAG
Statistics
Matches: 68, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
88 1 0.01
89 67 0.99
ACGTcount: A:0.22, C:0.26, G:0.11, T:0.41
Consensus pattern (89 bp):
TCACCATCCCTTTTCATAATTCGATAGCCGAAGCTATCCCTTTTCATATTTAAATGGTCATCTCC
ATCCCTTTTCATTGTTGATAGTCA
Found at i:14663477 original size:60 final size:60
Alignment explanation
Indices: 14663377--14663537 Score: 209
Period size: 60 Copynumber: 2.7 Consensus size: 60
14663367 GGTCGTCTCC
* * * **
14663377 ATCCCTTTTCATTGTT-GATAGTCATCACCAT-CTGTTTTCATAATTCGATAGCTGAAGCT
1 ATCCCTTTTCATAGTTAAATGGTCATCACCATCCT-TTTTCATAATTCGATAGCCAAAGCT
* *
14663436 ATCCCTTTTCATATTTAAATGGTCATTACCATCCTTTTTCATAATTCGATAGCCAAAGCT
1 ATCCCTTTTCATAGTTAAATGGTCATCACCATCCTTTTTCATAATTCGATAGCCAAAGCT
** *
14663496 ATCCCTTTTCATAGTTCGATGGTCGTCACCATCCTTTTTCAT
1 ATCCCTTTTCATAGTTAAATGGTCATCACCATCCTTTTTCAT
14663538 GGTTGATGGT
Statistics
Matches: 88, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
59 14 0.16
60 72 0.82
61 2 0.02
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.41
Consensus pattern (60 bp):
ATCCCTTTTCATAGTTAAATGGTCATCACCATCCTTTTTCATAATTCGATAGCCAAAGCT
Found at i:14663532 original size:89 final size:89
Alignment explanation
Indices: 14663436--14663605 Score: 214
Period size: 89 Copynumber: 1.9 Consensus size: 89
14663426 AGCTGAAGCT
* * * *
14663436 ATCCCTTTTCATATTTAAATGGTCATTACCATCCTTTTTCATAATTCGATAGCCAAAGCTATCCC
1 ATCCTTTTTCATAGTT-AATGGTCATCACCATCCCTTTTCATAATTCGATAGCCAAAGCTATCCC
*
14663501 TTTTCATAGTTCGATGGTCGTCACC
65 TTTTCATAGGTCGATGGTCGTCACC
* * * * * **
14663526 ATCCTTTTTCATGGTTGATGGTCGTCACCATCCCTTTTCATATTTTGATAGCTGAAGCTATCCCT
1 ATCCTTTTTCATAGTTAATGGTCATCACCATCCCTTTTCATAATTCGATAGCCAAAGCTATCCCT
*
14663591 TTTCATTGGTCGATG
66 TTTCATAGGTCGATG
14663606 ATTGTCGATA
Statistics
Matches: 67, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
89 54 0.81
90 13 0.19
ACGTcount: A:0.21, C:0.24, G:0.14, T:0.41
Consensus pattern (89 bp):
ATCCTTTTTCATAGTTAATGGTCATCACCATCCCTTTTCATAATTCGATAGCCAAAGCTATCCCT
TTTCATAGGTCGATGGTCGTCACC
Found at i:14663545 original size:29 final size:30
Alignment explanation
Indices: 14663305--14663567 Score: 178
Period size: 30 Copynumber: 8.8 Consensus size: 30
14663295 TAAAATTACA
*
14663305 ATGGTTGTCACCATCCCTTTTCATAGTTCG
1 ATGGTCGTCACCATCCCTTTTCATAGTTCG
* * * * *
14663335 ATAGCCG-AAGCTATCCCTTTTCATATTTCG
1 ATGGTCGTCA-CCATCCCTTTTCATAGTTCG
* *
14663365 ATGGTCGTCTCCATCCCTTTTCATTGTT-G
1 ATGGTCGTCACCATCCCTTTTCATAGTTCG
* * ** *
14663394 ATAGTCATCACCATCTGTTTTCATAATTCG
1 ATGGTCGTCACCATCCCTTTTCATAGTTCG
* * * * **
14663424 ATAG-C-TGAAGCTATCCCTTTTCATATTTAA
1 ATGGTCGT-CA-CCATCCCTTTTCATAGTTCG
* * * *
14663454 ATGGTCATTACCATCCTTTTTCATAATTCG
1 ATGGTCGTCACCATCCCTTTTCATAGTTCG
* *** *
14663484 ATAG-CCAAAGCTATCCCTTTTCATAGTTCG
1 ATGGTCGTCA-CCATCCCTTTTCATAGTTCG
* *
14663514 ATGGTCGTCACCATCCTTTTTCATGGTT-G
1 ATGGTCGTCACCATCCCTTTTCATAGTTCG
14663543 ATGGTCGTCACCATCCCTTTTCATA
1 ATGGTCGTCACCATCCCTTTTCATA
14663568 TTTTGATAGC
Statistics
Matches: 174, Mismatches: 50, Indels: 19
0.72 0.21 0.08
Matches are distributed among these distances:
28 1 0.01
29 51 0.29
30 117 0.67
31 4 0.02
32 1 0.01
ACGTcount: A:0.21, C:0.25, G:0.14, T:0.40
Consensus pattern (30 bp):
ATGGTCGTCACCATCCCTTTTCATAGTTCG
Found at i:14663576 original size:149 final size:149
Alignment explanation
Indices: 14663314--14663596 Score: 449
Period size: 149 Copynumber: 1.9 Consensus size: 149
14663304 AATGGTTGTC
* * * *
14663314 ACCATCCCTTTTCATAGTTCGATAGCCGAAGCTATCCCTTTTCATATTTCGATGGTCGTCTCCAT
1 ACCATCCCTTTTCATAATTCGATAGCCAAAGCTATCCCTTTTCATAGTTCGATGGTCGTCACCAT
* **
14663379 CCCTTTTCATTGTTGATAGTCATCACCATCTGTTTTCATAATTCGATAGCTGAAGCTATCCCTTT
66 CCCTTTTCATGGTTGATAGTCATCACCATCCCTTTTCATAATTCGATAGCTGAAGCTATCCCTTT
14663444 TCATATTTAAATGGTCATT
131 TCATATTTAAATGGTCATT
*
14663463 ACCATCCTTTTTCATAATTCGATAGCCAAAGCTATCCCTTTTCATAGTTCGATGGTCGTCACCAT
1 ACCATCCCTTTTCATAATTCGATAGCCAAAGCTATCCCTTTTCATAGTTCGATGGTCGTCACCAT
* * * * *
14663528 CCTTTTTCATGGTTGATGGTCGTCACCATCCCTTTTCATATTTTGATAGCTGAAGCTATCCCTTT
66 CCCTTTTCATGGTTGATAGTCATCACCATCCCTTTTCATAATTCGATAGCTGAAGCTATCCCTTT
14663593 TCAT
131 TCAT
14663597 TGGTCGATGA
Statistics
Matches: 121, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
149 121 1.00
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (149 bp):
ACCATCCCTTTTCATAATTCGATAGCCAAAGCTATCCCTTTTCATAGTTCGATGGTCGTCACCAT
CCCTTTTCATGGTTGATAGTCATCACCATCCCTTTTCATAATTCGATAGCTGAAGCTATCCCTTT
TCATATTTAAATGGTCATT
Found at i:14672890 original size:29 final size:29
Alignment explanation
Indices: 14672831--14672998 Score: 87
Period size: 29 Copynumber: 5.7 Consensus size: 29
14672821 AGTCGAAGCT
* *
14672831 ATCCCTTTTCATATTTCGATGGTCGTTACC
1 ATCCC-TTTCATATTTCGATGGTCATCACC
*
14672861 ATCCCTTT-ATATTGTTGATGGTCATCACC
1 ATCCCTTTCATATT-TCGATGGTCATCACC
* *** *
14672890 ATCCCTTTTTATAATTT-GATAACCGA--AGCT
1 ATCCC-TTTCAT-ATTTCGATGGTC-ATCA-CC
* *
14672920 ATCCCTTTCCATGTTTCGATGGTCGTCACC
1 ATCCCTTT-CATATTTCGATGGTCATCACC
**
14672950 ATCCCTTTTCATGGTT-GATGGTCATCA-C
1 ATCCC-TTTCATATTTCGATGGTCATCACC
*
14672978 AGTCCCATTTCATAATTCGAT
1 A-TCCC-TTTCATATTTCGAT
14672999 AGCCGAAGCT
Statistics
Matches: 106, Mismatches: 19, Indels: 26
0.70 0.13 0.17
Matches are distributed among these distances:
28 7 0.07
29 49 0.46
30 39 0.37
31 8 0.08
32 3 0.03
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.40
Consensus pattern (29 bp):
ATCCCTTTCATATTTCGATGGTCATCACC
Found at i:14672940 original size:89 final size:88
Alignment explanation
Indices: 14672796--14673063 Score: 360
Period size: 89 Copynumber: 3.0 Consensus size: 88
14672786 ACAATGGTTG
* * * *
14672796 TCACCATCCCTTTTTATAGTTCGATAGTCGAAGCTATCCCTTTTCATATTTCGATGGTCGTTACC
1 TCACCATCCCTTTTTATAATTCGATAGCCGAAGCTATCCCTTTTCATGTTTCGATGGTCGTCACC
*
14672861 ATCCCTTTATATTGTTGATGGTCA
66 ATCCCTTT-TATGGTTGATGGTCA
* * *
14672885 TCACCATCCCTTTTTATAATTTGATAACCGAAGCTATCCCTTTCCATGTTTCGATGGTCGTCACC
1 TCACCATCCCTTTTTATAATTCGATAGCCGAAGCTATCCCTTTTCATGTTTCGATGGTCGTCACC
14672950 ATCCCTTTTCATGGTTGATGGTCA
66 ATCCCTTTT-ATGGTTGATGGTCA
* * * *
14672974 TCA-CAGTCCCATTTCATAATTCGATAGCCGAAGCTTTCCTTTTTCATAG-TTCGATGGTCGTCA
1 TCACCA-TCCCTTTTTATAATTCGATAGCCGAAGCTATCCCTTTTCAT-GTTTCGATGGTCGTCA
*
14673037 CCATCCCTTTCCATGGTTGATGGTCA
64 CCATCCCTTT-TATGGTTGATGGTCA
14673063 T
1 T
14673064 TACCGTCTAT
Statistics
Matches: 159, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
88 3 0.02
89 155 0.97
90 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.15, T:0.39
Consensus pattern (88 bp):
TCACCATCCCTTTTTATAATTCGATAGCCGAAGCTATCCCTTTTCATGTTTCGATGGTCGTCACC
ATCCCTTTTATGGTTGATGGTCA
Found at i:14673058 original size:29 final size:30
Alignment explanation
Indices: 14672789--14673090 Score: 145
Period size: 30 Copynumber: 10.2 Consensus size: 30
14672779 TAAAATAACA
* * *
14672789 ATGGTTGTCACCATCCCTTTTTATAGTTCG
1 ATGGTCGTCACCATCCCTTTTCATGGTTCG
* * * **
14672819 ATAGTCG-AAGCTATCCCTTTTCATATTTCG
1 ATGGTCGTCA-CCATCCCTTTTCATGGTTCG
* *
14672849 ATGGTCGTTACCATCCCTTTAT-ATTGTT-G
1 ATGGTCGTCACCATCCCTTT-TCATGGTTCG
* * ** *
14672878 ATGGTCATCACCATCCCTTTTTATAATTTG
1 ATGGTCGTCACCATCCCTTTTCATGGTTCG
*** * * * *
14672908 ATAACCG-AAGCTATCCCTTTCCATGTTTCG
1 ATGGTCGTCA-CCATCCCTTTTCATGGTTCG
14672938 ATGGTCGTCACCATCCCTTTTCATGGTT-G
1 ATGGTCGTCACCATCCCTTTTCATGGTTCG
* * **
14672967 ATGGTCATCA-CAGTCCCATTTCATAATTCG
1 ATGGTCGTCACCA-TCCCTTTTCATGGTTCG
* * * ** * *
14672997 ATAGCCG-AAGCTTTCCTTTTTCATAGTTCG
1 ATGGTCGTCA-CCATCCCTTTTCATGGTTCG
*
14673027 ATGGTCGTCACCATCCCTTTCCATGGTT-G
1 ATGGTCGTCACCATCCCTTTTCATGGTTCG
* * * **
14673056 ATGGTCATTACCGTCTATTTTCATGGTT-G
1 ATGGTCGTCACCATCCCTTTTCATGGTTCG
14673085 ATGGTC
1 ATGGTC
14673091 ATCCCTTTTC
Statistics
Matches: 200, Mismatches: 60, Indels: 25
0.70 0.21 0.09
Matches are distributed among these distances:
28 3 0.01
29 78 0.39
30 115 0.57
31 4 0.02
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.39
Consensus pattern (30 bp):
ATGGTCGTCACCATCCCTTTTCATGGTTCG
Found at i:14673100 original size:23 final size:23
Alignment explanation
Indices: 14673038--14673113 Score: 80
Period size: 23 Copynumber: 3.0 Consensus size: 23
14673028 TGGTCGTCAC
*
14673038 CATCCCTTTCCATGGTTGATGGT
1 CATCCCTTTTCATGGTTGATGGT
14673061 CATTACCGTCTATTTTCATGGTTGATGGT
1 CA-T-CC--C--TTTTCATGGTTGATGGT
*
14673090 CATCCCTTTTCATTGTTGATGGT
1 CATCCCTTTTCATGGTTGATGGT
14673113 C
1 C
14673114 GATACGCCAT
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
23 19 0.42
24 1 0.02
25 3 0.07
27 3 0.07
28 1 0.02
29 18 0.40
ACGTcount: A:0.14, C:0.22, G:0.20, T:0.43
Consensus pattern (23 bp):
CATCCCTTTTCATGGTTGATGGT
Found at i:14679841 original size:23 final size:23
Alignment explanation
Indices: 14679811--14679863 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
14679801 TTATGGAGGC
14679811 TGAATTGTTCGATGTTTGGGGTA
1 TGAATTGTTCGATGTTTGGGGTA
14679834 TGAATTGTTCGATGTTTGGGGTA
1 TGAATTGTTCGATGTTTGGGGTA
*
14679857 TGGATTG
1 TGAATTG
14679864 AAGCTGTTGC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.17, C:0.04, G:0.36, T:0.43
Consensus pattern (23 bp):
TGAATTGTTCGATGTTTGGGGTA
Found at i:14683186 original size:17 final size:17
Alignment explanation
Indices: 14683164--14683206 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
14683154 CACATTATCG
*
14683164 TTGCATTTTTATTTTCA
1 TTGCATTTTTATTGTCA
14683181 TTGCATTTTTATTGTCA
1 TTGCATTTTTATTGTCA
14683198 TTGCATTTT
1 TTGCATTTT
14683207 AATGTTAGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.16, C:0.12, G:0.09, T:0.63
Consensus pattern (17 bp):
TTGCATTTTTATTGTCA
Found at i:14686795 original size:19 final size:19
Alignment explanation
Indices: 14686768--14686804 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14686758 TGCACGCACG
* *
14686768 ATTCTACTAATCAAACACA
1 ATTCCACTAATAAAACACA
14686787 ATTCCACTAATAAAACAC
1 ATTCCACTAATAAAACAC
14686805 CATTAACGAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.49, C:0.27, G:0.00, T:0.24
Consensus pattern (19 bp):
ATTCCACTAATAAAACACA
Found at i:14698467 original size:12 final size:12
Alignment explanation
Indices: 14698450--14698475 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14698440 CACTGTGACA
14698450 CCCAAGACAATG
1 CCCAAGACAATG
14698462 CCCAAGACAATG
1 CCCAAGACAATG
14698474 CC
1 CC
14698476 TTCACGGACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.38, G:0.15, T:0.08
Consensus pattern (12 bp):
CCCAAGACAATG
Found at i:14703650 original size:42 final size:42
Alignment explanation
Indices: 14703589--14703697 Score: 164
Period size: 42 Copynumber: 2.6 Consensus size: 42
14703579 ACGACCAAGC
*
14703589 CACACACCCATGTGCCAAGCTGTGTAACACTCGAAATGGCCT
1 CACACACCCATGTGCCAAGCCGTGTAACACTCGAAATGGCCT
* *
14703631 CACACACCCGTGTGTCAAGCCGTGTAACACTCGAAATGGCCT
1 CACACACCCATGTGCCAAGCCGTGTAACACTCGAAATGGCCT
* * *
14703673 CACACATCCACGTGCCAGGCCGTGT
1 CACACACCCATGTGCCAAGCCGTGT
14703698 GCTAGGCCAT
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.26, C:0.35, G:0.21, T:0.18
Consensus pattern (42 bp):
CACACACCCATGTGCCAAGCCGTGTAACACTCGAAATGGCCT
Found at i:14705186 original size:50 final size:50
Alignment explanation
Indices: 14705122--14705300 Score: 184
Period size: 50 Copynumber: 3.6 Consensus size: 50
14705112 AGAGGTACAT
* * ** *
14705122 GTAAGACCAAGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCC
1 GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAACTCCCAC
* * *
14705172 GTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCAT
1 GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAACTCCCAC
* * * * *
14705222 GTAAGACCATATCTGGGATATGGCATTGGCA--GTACA-GAAAACATCCCAT
1 GTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAAC-TCCCAC
* *
14705271 GTAAGACCATGTCAGGGACATGGCTTTGGC
1 GTAAGACCATGTCTGGGACATGGCATTGGC
14705301 TTGTTATTAT
Statistics
Matches: 110, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
48 6 0.05
49 34 0.31
50 70 0.64
ACGTcount: A:0.28, C:0.23, G:0.29, T:0.20
Consensus pattern (50 bp):
GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAACTCCCAC
Found at i:14710127 original size:43 final size:44
Alignment explanation
Indices: 14710066--14710181 Score: 153
Period size: 48 Copynumber: 2.6 Consensus size: 44
14710056 TTTGAGTACT
14710066 TCTGATCAGTGACAAGTGATAAGTGGTAGC-TTAGCTACACTTA
1 TCTGATCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
14710109 TCTGATCGGTGACAAGTGACAAGTAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAGTGACAAGTG---A-TAAGTGGTAGCTTTAGCTACACTTA
* * *
14710157 TCTGATTAGTGATAAGTGACAAGTG
1 TCTGATCAGTGACAAGTGATAAGTG
14710182 ACAAGTGATA
Statistics
Matches: 63, Mismatches: 5, Indels: 9
0.82 0.06 0.12
Matches are distributed among these distances:
43 17 0.27
44 5 0.08
45 1 0.02
46 1 0.02
47 11 0.17
48 28 0.44
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (44 bp):
TCTGATCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:14710205 original size:58 final size:58
Alignment explanation
Indices: 14710117--14710253 Score: 217
Period size: 58 Copynumber: 2.4 Consensus size: 58
14710107 TATCTGATCG
* *
14710117 GTGACAAGTGACAA--G-TAAGTGGTAGCTTTAGCTACACTTATCTGATTAGTGATAA
1 GTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAA
14710172 GTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAA
1 GTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAA
* *
14710230 GTGACAAGTAACAAGTGACAAGTG
1 GTGACAAGTGACAAGTGATAAGTG
14710254 ACAAGTGATA
Statistics
Matches: 75, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
55 14 0.19
57 1 0.01
58 60 0.80
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (58 bp):
GTGACAAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAA
Found at i:14710234 original size:7 final size:7
Alignment explanation
Indices: 14710222--14710261 Score: 71
Period size: 7 Copynumber: 5.7 Consensus size: 7
14710212 TTATCTGATC
14710222 AGTGACA
1 AGTGACA
14710229 AGTGACA
1 AGTGACA
*
14710236 AGTAACA
1 AGTGACA
14710243 AGTGACA
1 AGTGACA
14710250 AGTGACA
1 AGTGACA
14710257 AGTGA
1 AGTGA
14710262 TAAATGTGAT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.45, C:0.12, G:0.28, T:0.15
Consensus pattern (7 bp):
AGTGACA
Found at i:14715910 original size:50 final size:50
Alignment explanation
Indices: 14715835--14716075 Score: 229
Period size: 50 Copynumber: 4.9 Consensus size: 50
14715825 CATTTGGGTA
* *
14715835 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGAT
1 AAGAGGTCCTATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGAT
* *
14715885 AAGAGGTCCTATGTAAGACCATGTCTAGGACATGGCGTTGGCAGC-GAGAT
1 AAGAGGTCCTATGTAAGACCATGTCTGGGACATGGCATTGGCA-CTGAGAT
* ** * * *
14715935 GAGAGGTCCTCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATAT
1 AAGAGGTCCTATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGAT
* ** * * * * *
14715985 GAGAACTCTTATGTAAGA-CATATCTGGGATATGGCATTGGCAGTACAGA-
1 AAGAGGTCCTATGTAAGACCATGTCTGGGACATGGCATTGGCACT-GAGAT
** * * *
14716034 AA-ACATCCCATGTAAGACCATGTGTGGGACATGGCTTTGGCA
1 AAGAGGTCCTATGTAAGACCATGTCTGGGACATGGCATTGGCA
14716076 TGTTATTATC
Statistics
Matches: 157, Mismatches: 30, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
48 11 0.07
49 43 0.27
50 102 0.65
51 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.23
Consensus pattern (50 bp):
AAGAGGTCCTATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGAT
Found at i:14721397 original size:50 final size:53
Alignment explanation
Indices: 14721343--14721474 Score: 171
Period size: 50 Copynumber: 2.5 Consensus size: 53
14721333 ATGGGTGCCC
* * **
14721343 ATGCCATGTCCCAAACATGGTCTTACGGGGGACCTCTCAT-CTCGGT-A-CCA
1 ATGCCATGTCCCAGACATGGTCTTACGGGAGACCTCTCATACTCAATAAGCCA
*
14721393 ATGCCATGTCCCAGACATGGTCTTACGTGAGACCTCTCATAACCTCAATAATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACGGGAGACCTCTCAT-A-CTCAATAA-GCCA
14721449 ATGCCATGTCCCAGACATGGTCTTAC
1 ATGCCATGTCCCAGACATGGTCTTAC
14721475 ATGGGGTCTC
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
50 37 0.52
53 4 0.06
54 1 0.01
56 29 0.41
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (53 bp):
ATGCCATGTCCCAGACATGGTCTTACGGGAGACCTCTCATACTCAATAAGCCA
Found at i:14725303 original size:9 final size:9
Alignment explanation
Indices: 14725289--14725337 Score: 53
Period size: 9 Copynumber: 5.1 Consensus size: 9
14725279 AAGCACCGGG
14725289 CTTTCAATT
1 CTTTCAATT
14725298 CTTTCAATT
1 CTTTCAATT
* *
14725307 CTTGCAACTCAG
1 CTTTCAA-T--T
14725319 CTTTCAATT
1 CTTTCAATT
14725328 CTTTCAATT
1 CTTTCAATT
14725337 C
1 C
14725338 CAACGGGGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 25 0.76
10 1 0.03
11 1 0.03
12 6 0.18
ACGTcount: A:0.22, C:0.27, G:0.04, T:0.47
Consensus pattern (9 bp):
CTTTCAATT
Found at i:14728982 original size:50 final size:49
Alignment explanation
Indices: 14728861--14728986 Score: 141
Period size: 49 Copynumber: 2.6 Consensus size: 49
14728851 AATAACATGC
* * *
14728861 CAAA-GCCATGTCCCAGACATGGTCTCACATGAGATGTTTCCTGTACTG
1 CAAATGCCATGTCCCAGACATGGTCTTACATGAGATGTTTCATATACTG
* *
14728909 CAAATGCCATATCCCAGATATGGTCTTACATGAGA-GTTCTCATAT-CGGTG
1 CAAATGCCATGTCCCAGACATGGTCTTACATGAGATGTT-TCATATAC--TG
**
14728959 CCCATGCCATGTCCCAGACATGGTCTTA
1 CAAATGCCATGTCCCAGACATGGTCTTA
14728987 TGGGGGACCT
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
48 8 0.12
49 31 0.48
50 26 0.40
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (49 bp):
CAAATGCCATGTCCCAGACATGGTCTTACATGAGATGTTTCATATACTG
Found at i:14731089 original size:105 final size:107
Alignment explanation
Indices: 14730958--14731173 Score: 337
Period size: 105 Copynumber: 2.0 Consensus size: 107
14730948 CTTCAATTAA
* *
14730958 ATCCTTTATCATCTAAAACTCATATTTACCCACTTTTGCAATTGAACTCTAATATGCAATTCAGA
1 ATCCTTTATCATCTAAAACTCATATTTACCCACTTTTGCAATTAAACCCTAATATGCAATTCAGA
14731023 CATGCAATCGCTGAAATTTCTTATCGGTATTCTAACACATGC
66 CATGCAATCGCTGAAATTTCTTATCGGTATTCTAACACATGC
* *
14731065 ATCC-TTATCATCT-AAACTCATATTTACCCACTTTTGGAATTAAACCCTAATATTCAATTCAGA
1 ATCCTTTATCATCTAAAACTCATATTTACCCACTTTTGCAATTAAACCCTAATATGCAATTCAGA
* * * * *
14731128 TATGTAATCGTTGAAATTTCTTATTGGTATTTTAACACATGC
66 CATGCAATCGCTGAAATTTCTTATCGGTATTCTAACACATGC
14731170 ATCC
1 ATCC
14731174 AATCAATCGG
Statistics
Matches: 100, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
105 87 0.87
106 9 0.09
107 4 0.04
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.38
Consensus pattern (107 bp):
ATCCTTTATCATCTAAAACTCATATTTACCCACTTTTGCAATTAAACCCTAATATGCAATTCAGA
CATGCAATCGCTGAAATTTCTTATCGGTATTCTAACACATGC
Found at i:14738850 original size:51 final size:54
Alignment explanation
Indices: 14738758--14738901 Score: 156
Period size: 56 Copynumber: 2.7 Consensus size: 54
14738748 AAAATAACAT
* * **
14738758 GCCAAA-GCCATGTCCCAGACATGGTCTTAC-GGGGAACCTCTCAT-CTCGGT-A
1 GCCAAATGCCATGTCCCAGACATGGTCTTACATGGG-ATCTCTCATACTCAATAA
*
14738809 -CCAAATGCCATGTCCCAGACATGATCTTACATGGGATCTCTCATAAACTCAATAA
1 GCCAAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCAT--ACTCAATAA
*
14738864 TGCC-AATGCCATGTCCCAGACTTGGTCTTACATGGGAT
1 -GCCAAATGCCATGTCCCAGACATGGTCTTACATGGGAT
14738902 TTCATTTCCC
Statistics
Matches: 78, Mismatches: 7, Indels: 11
0.81 0.07 0.11
Matches are distributed among these distances:
50 5 0.06
51 31 0.40
52 3 0.04
54 4 0.05
55 1 0.01
56 32 0.41
57 2 0.03
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.25
Consensus pattern (54 bp):
GCCAAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCTCATACTCAATAA
Found at i:14740701 original size:645 final size:635
Alignment explanation
Indices: 14739472--14740742 Score: 1665
Period size: 645 Copynumber: 2.0 Consensus size: 635
14739462 NNNNNNNNGG
14739472 TTTAACATAATTTCAAGCTTCATATTCTACCATAAAACACCAAAATAAACACATTTCAACTATGG
1 TTTAACATAATTTCAAGCTTCATATTCTACCATAAAACACCAAAATAAACACATTTCAACTATGG
* * * *
14739537 GTGTTTTTCCAAATATGAACCTTAACATGAATTAATGGTTGAATAAGCTAAATCGAGCTACAAGG
66 GTATTTTTCCAAATATGAACCCTAACATGAATTAATGGTAGAATAAGCTAAACCGAGCTACAAGG
* * * *
14739602 ACTCCAAAAACATAAAAAAACATTAAAAATGGGGCTTGTATGTACTTACAATCAAGCTTGAAAGT
131 ACTCCAAAAACATAAAAAAACATTAAAAACGGGGATTGGATGCACTTACAATCAAGCTTGAAAGT
* * * *
14739667 GGCCAAAACCCTAGCCATGGAGAACTTGTAAGTTTCCACTATGGTGGAAGAAATATGAGCACATT
196 GGCAAAAACCCTAGCCATGGAGAACTTGTAAGTTTCCACTATGATGGAAGAAAGATGAGCACATG
* *
14739732 TTGGCTTTATTTTCCCTTTTAATTCATTTAATTACCAAATGACAAAAATGCCCCTAACTTAAAAA
261 TTGCCTCTATTTTCCCTTTTAATTCATTTAATTACCAAATGACAAAAATGCCCCTAACTTAAAAA
* * * *
14739797 TATCCTATTTCACCTATCTCTTGTCCATTTTTGTCTATGAAAATCTAATGGTCTAATTACCATTT
326 TATCCTATTTCACCTATCGCATGCCCATTTTTGTCCATGAAAATCTAATGGTCTAATTACCATTT
*
14739862 AAGGACCTCTACTTCAATTAAATATTTTATCATCTAAAACTCATATTTACGCACTTTTGCAATTA
391 AAGGACCTCTACTTCAATTAAATATTTTATCATCTAAAACTCATATTTACCCACTTTTGCAATTA
** *
14739927 AACCCTAATATGCAATTCAGACATGCAATTTCTAAAATTTCTTATCGGTATTCTAACACATGCAT
456 AACCCTAATATGCAATTCAGACATGCAATCGCTAAAATTTCTTATCGATATTCTAACACATGCAT
* * * *
14739992 CCAATCAATTGGTAAATAATAAAAATTAATCACAATAAACTTTTCTATCTCAAAATCGTGGTTTC
521 CCAATAAATCGATAAATAATAAAAATTAATCACAATAAACTTTTCTATCTCAAAATCATGGTTTC
* *
14740057 GCAACCACTATTTTGTTTAGGCCCTATTTCGGGATGTTACACAAAAGTTT
586 GCAACCACTATTTCGTTTAGGCCCTATTTCGAGATGTTACACAAAAGTTT
** *
14740107 TTTAACATAATTTCAAGCTTCATATTCTACCATAAAACATTAAAATAAACACATTTC-ACTTTTG
1 TTTAACATAATTTCAAGCTTCATATTCTACCATAAAACACCAAAATAAACACATTTCAAC-TATG
14740171 GGTATTTTTCCAAATATGAACCCTAACATGAATTAATGGTAGAATAAGCTAAACCGAGCTACGAA
65 GGTATTTTTCCAAATATGAACCCTAACATGAATTAATGGTAGAATAAGCTAAACCGAGCTAC-AA
* * * *
14740236 -GACTCGAAAAAC-TTAAAAAA-ATTAAAAACGGGGATTGGATGCACTTACTAT-GAGCTTGAGA
129 GGACTCCAAAAACATAAAAAAACATTAAAAACGGGGATTGGATGCACTTACAATCAAGCTT--GA
* **
14740297 AAGT-G-AAGAAACCCTAGCTATGGAGTCCTT-TAAAGTTTTGGCC-CT-T-ATGGAAG-AAGAT
192 AAGTGGCAA-AAACCCTAGCCATGGAGAACTTGT-AAG-TTT--CCACTATGATGGAAGAAAGAT
* * * * *
14740355 GAGCACATGTTGCCATCT-TTTTCCCTTTTAATT-ATTTTTATTACCAAATGACTATAATGCTCT
252 GAGCACATGTTGCC-TCTATTTTCCCTTTTAATTCA-TTTAATTACCAAATGACAAAAATGCCCC
* * * ** * * *
14740418 TCA-TTAAAACTTTAGTTATTTTTATCTAT-GCATGCCCATTTTTGTCCATGAAAATCTACTGGT
315 TAACTTAAAAATAT-CCTA-TTTCACCTATCGCATGCCCATTTTTGTCCATGAAAATCTAATGGT
*
14740481 CTAATTATCATTTAAGGACCTCTACTTCAATTACGCACTTCAATTAAATCCTTTATCATCTAAAA
378 CTAATTACCATTTAAGGACCTCTACTTCAATT----A----AA-T--AT--TTTATCATCTAAAA
*
14740546 CTCATATTTACCCACTTTTGTAATTAAACCCTAATATGCAATTCAGACATGCAATCGCTAAAATT
430 CTCATATTTACCCACTTTTGCAATTAAACCCTAATATGCAATTCAGACATGCAATCGCTAAAATT
* * *
14740611 TCTTATCGATATTCTAACATATGCATCTAATAAATCGATAAATTATAAAAATTAATCACAATAAA
495 TCTTATCGATATTCTAACACATGCATCCAATAAATCGATAAATAATAAAAATTAATCACAATAAA
* * *
14740676 CTTTTCTATCTCAAATTCATGGTTTCGCAACCACTGTTTCGTTTAGGCCCTATTTCGAGATTTTA
560 CTTTTCTATCTCAAAATCATGGTTTCGCAACCACTATTTCGTTTAGGCCCTATTTCGAGATGTTA
14740741 CA
625 CA
14740743 TTACCGTAAA
Statistics
Matches: 551, Mismatches: 59, Indels: 42
0.85 0.09 0.06
Matches are distributed among these distances:
631 9 0.02
632 125 0.23
633 65 0.12
634 19 0.03
635 129 0.23
636 5 0.01
640 2 0.00
641 1 0.00
643 2 0.00
645 194 0.35
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.34
Consensus pattern (635 bp):
TTTAACATAATTTCAAGCTTCATATTCTACCATAAAACACCAAAATAAACACATTTCAACTATGG
GTATTTTTCCAAATATGAACCCTAACATGAATTAATGGTAGAATAAGCTAAACCGAGCTACAAGG
ACTCCAAAAACATAAAAAAACATTAAAAACGGGGATTGGATGCACTTACAATCAAGCTTGAAAGT
GGCAAAAACCCTAGCCATGGAGAACTTGTAAGTTTCCACTATGATGGAAGAAAGATGAGCACATG
TTGCCTCTATTTTCCCTTTTAATTCATTTAATTACCAAATGACAAAAATGCCCCTAACTTAAAAA
TATCCTATTTCACCTATCGCATGCCCATTTTTGTCCATGAAAATCTAATGGTCTAATTACCATTT
AAGGACCTCTACTTCAATTAAATATTTTATCATCTAAAACTCATATTTACCCACTTTTGCAATTA
AACCCTAATATGCAATTCAGACATGCAATCGCTAAAATTTCTTATCGATATTCTAACACATGCAT
CCAATAAATCGATAAATAATAAAAATTAATCACAATAAACTTTTCTATCTCAAAATCATGGTTTC
GCAACCACTATTTCGTTTAGGCCCTATTTCGAGATGTTACACAAAAGTTT
Found at i:14744713 original size:35 final size:35
Alignment explanation
Indices: 14744654--14744722 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
14744644 TTGGTTGGAT
*
14744654 AAATAATCTACTGGCACTACGTAGTGGCATCATGA
1 AAATAATCTACTGGCACTAAGTAGTGGCATCATGA
* * *
14744689 AAATAGTCTATTGGCTCTAAGTAGTGGCATCATG
1 AAATAATCTACTGGCACTAAGTAGTGGCATCATG
14744723 GAGTGATCTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (35 bp):
AAATAATCTACTGGCACTAAGTAGTGGCATCATGA
Found at i:14745274 original size:27 final size:28
Alignment explanation
Indices: 14745242--14745305 Score: 87
Period size: 27 Copynumber: 2.3 Consensus size: 28
14745232 TATACCAAGG
14745242 ACTATCTTATGATGGAA-GTCT-CCAAAA
1 ACTATCTTATG-TGGAATGTCTGCCAAAA
**
14745269 ACTATCTTATGTGGAATGTCTGCCAAGG
1 ACTATCTTATGTGGAATGTCTGCCAAAA
14745297 ACTATCTTA
1 ACTATCTTA
14745306 AAGACAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
26 5 0.15
27 15 0.45
28 13 0.39
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (28 bp):
ACTATCTTATGTGGAATGTCTGCCAAAA
Found at i:14745303 original size:28 final size:27
Alignment explanation
Indices: 14745210--14745305 Score: 104
Period size: 28 Copynumber: 3.5 Consensus size: 27
14745200 GAAGCCTACT
* ** *
14745210 AAGGACTATCTTATGCGGGCTGTATACC
1 AAGGACTATCTTATGTGGAATGTCT-CC
14745238 AAGGACTATCTTATGATGGAA-GTCTCC
1 AAGGACTATCTTATG-TGGAATGTCTCC
**
14745265 AAAAACTATCTTATGTGGAATGTCTGCC
1 AAGGACTATCTTATGTGGAATGTCT-CC
14745293 AAGGACTATCTTA
1 AAGGACTATCTTA
14745306 AAGACAAAAA
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
26 5 0.09
27 19 0.33
28 31 0.54
29 2 0.04
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (27 bp):
AAGGACTATCTTATGTGGAATGTCTCC
Found at i:14747288 original size:27 final size:28
Alignment explanation
Indices: 14747217--14747291 Score: 75
Period size: 27 Copynumber: 2.8 Consensus size: 28
14747207 AATCAAGGTA
* *
14747217 TGCCACAAAGGCA-GTCTATTTAGAGTT
1 TGCCACAAAGGCATTTCTATTCAGAGTT
* **
14747244 TTCCACAAA-GTTTATTCT-TTCAGAGTT
1 TGCCACAAAGGCAT-TTCTATTCAGAGTT
14747271 TGCCACAAAGGCATTTCTATT
1 TGCCACAAAGGCATTTCTATT
14747292 GTCAGGTTTA
Statistics
Matches: 36, Mismatches: 8, Indels: 7
0.71 0.16 0.14
Matches are distributed among these distances:
26 1 0.03
27 28 0.78
28 7 0.19
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.36
Consensus pattern (28 bp):
TGCCACAAAGGCATTTCTATTCAGAGTT
Found at i:14754049 original size:5 final size:5
Alignment explanation
Indices: 14754039--14754064 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14754029 TGAGCATTCG
14754039 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
14754065 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:14754853 original size:9 final size:9
Alignment explanation
Indices: 14754839--14754875 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
14754829 TATAGTTTGA
14754839 TATTCGAAT
1 TATTCGAAT
14754848 TATTCGAAT
1 TATTCGAAT
*
14754857 TATTCGAGT
1 TATTCGAAT
14754866 TATTCGAAT
1 TATTCGAAT
14754875 T
1 T
14754876 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:14754946 original size:9 final size:9
Alignment explanation
Indices: 14754929--14754959 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
14754919 TCGAGTTGAT
14754929 TCGAATAAC
1 TCGAATAAC
*
14754938 TCGATTAAC
1 TCGAATAAC
14754947 TCGAATAAC
1 TCGAATAAC
14754956 TCGA
1 TCGA
14754960 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:14761061 original size:27 final size:27
Alignment explanation
Indices: 14760864--14761057 Score: 289
Period size: 27 Copynumber: 7.2 Consensus size: 27
14760854 ATATGCCACG
* *
14760864 AATGGCCGAAATACCCTCGAAGGGTAA
1 AATGACCGAAATACCCTCAAAGGGTAA
* * *
14760891 AATAATCGAAATACCCTCGAAGGGTAA
1 AATGACCGAAATACCCTCAAAGGGTAA
*
14760918 AATGACCAAAATACCCTCAAAGGGTAA
1 AATGACCGAAATACCCTCAAAGGGTAA
*
14760945 AATGACCGAAATACCCTCGAAGGGTAA
1 AATGACCGAAATACCCTCAAAGGGTAA
14760972 AATGACCGAAATACCCTCAAAGGGTAA
1 AATGACCGAAATACCCTCAAAGGGTAA
*
14760999 AATGACCGAAATACCCTCAAAGGGTTA
1 AATGACCGAAATACCCTCAAAGGGTAA
* * *
14761026 AATAATCGAAATACCCTCCAAGGGTAA
1 AATGACCGAAATACCCTCAAAGGGTAA
14761053 AATGA
1 AATGA
14761058 TCGATTTGCT
Statistics
Matches: 151, Mismatches: 16, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 151 1.00
ACGTcount: A:0.43, C:0.21, G:0.19, T:0.16
Consensus pattern (27 bp):
AATGACCGAAATACCCTCAAAGGGTAA
Found at i:14761215 original size:27 final size:27
Alignment explanation
Indices: 14761170--14761243 Score: 71
Period size: 26 Copynumber: 2.8 Consensus size: 27
14761160 ATAGGGGAAG
**
14761170 TATACTG-TACTGGTGGCTTTGCCACA
1 TATACTGTTACTGGCAGCTTTGCCACA
* **
14761196 TATACTGTTACTGGCAGCTTCGCTGCA
1 TATACTGTTACTGGCAGCTTTGCCACA
* *
14761223 -ATACTATTACTGGCAGATTTG
1 TATACTGTTACTGGCAGCTTTG
14761244 TTGCGATATT
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
26 25 0.64
27 14 0.36
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (27 bp):
TATACTGTTACTGGCAGCTTTGCCACA
Found at i:14764560 original size:412 final size:405
Alignment explanation
Indices: 14763602--14764722 Score: 1176
Period size: 412 Copynumber: 2.7 Consensus size: 405
14763592 CTATCTTAGA
* * * ** ** *
14763602 AAAAAAACATATCGACTAGTTGGAGTTGAGATTCTTCATGGGTTGGTCTTTTCAAAACTTGTACC
1 AAAAAAACATATAGATTAGTTGGAGCTGAGATTCTTGGT-GGTTGGTCTTTTTGAAACTTGTAAC
* * * * * *
14763667 CAAGCAAGATAATGTTTGGGCTAAAACTCTTTCTCAAAAGGTTGGGAGGAG-TCATCATAAGTGG
65 CACGTAGGATAATGTTTGGGCT-AAACTCTCTATCAAAAGGCTGGGAGGAGCT-ATCATAAGTGG
* * * * * * * *
14763731 TTGGGTTGACTCAAGAATAGAGGTGCCAACAATTGTAAAGTTAGGTTTAATTGAGGAAGAATCC-
128 TTGGGCTAACTCAAGAACAGGGGTGTCAACAATTGTAAAGTTAGGTTGAATCGAGGGAGAA-CCT
* * * ** * *
14763795 ATGGCTTTTTAGTTTAGTATTCTCCCAGATTGTGCCAATTGTTGATGTCTCTTTCACTGGGCTTG
192 ATGGC-TTTTAGTTTAATATTCTCACAAACAGTGCCAATTGTTGATGTCTCTTTTATTGGGCTTG
* * * * * *
14763860 GAGATTGGTTTAGCTAAACTTTATAGCTAGAAAATCTACAAAGTGTACTAGCAATATGGGTAGTC
256 GAGACTAGTTGAGCT-AACTTTATAGC-AGAAAATCGACAAAGTATACTAGCAATATGGATAGTC
* * *
14763925 ATGGTTGATGGTAGATATGATTGTGAGAACTTGTACTCAATATTTGGTAATGATCGTATGGCAAC
319 ATGGTTGATGGTAAAGATGATTGTGAGAACTTGTACTCAATATTTGGTAATGATCGTATGGAAAC
*
14763990 CAATTATTATTAGAAGTATCTT
384 CAATTACTATTAGAAGTATCTT
* * * * * * * * *
14764012 AGAAAAACATACAAATTTGTTGGAGCTGAGATTATTGGTGGACTGGTCTTTCTGGAACTTGTCAC
1 AAAAAAACATATAGATTAGTTGGAGCTGAGATTCTTGGTGG-TTGGTCTTTTTGAAACTTGTAAC
* * * ** ** *
14764077 CACGTAGGAAAATGTTTCGGCTCAAACTCTCAATCAAAA-GCTTAAGAACAGCCATCATAAGTGG
65 CACGTAGGATAATGTTTGGGCT-AAACTCTCTATCAAAAGGC-TGGGAGGAGCTATCATAAGTGG
* * *
14764141 TTGGGCTAACTCAAGAACAGGGGTGTTAGCAATTGTAAAGTTAGCTTGAATCGAGGGAGAACCTA
128 TTGGGCTAACTCAAGAACAGGGGTGTCAACAATTGTAAAGTTAGGTTGAATCGAGGGAGAACCTA
* * * *
14764206 -GAGCTTTTAGTTTAATATTCTCATAAACAGTGCCACTTGTTGATGACTCTTTTATTGGGCTTAG
193 TG-GCTTTTAGTTTAATATTCTCACAAACAGTGCCAATTGTTGATGTCTCTTTTATTGGGCTTGG
* * *
14764270 AGACTAGTTGAGCTACACTTTATAGCCGAACAATCGGCAAAGTATTCTAGCAATATGGATAGTCA
257 AGACTAGTTGAGCTA-ACTTTATAGCAGAA-AATCGACAAAGTATACTAGCAATATGGATAGTCA
*
14764335 TGGTTGATGGTAAAGATGGTTGTGAAGAACTTGTACTCAAAATATTTTGGTAATGATCGTATGGA
320 TGGTTGATGGTAAAGATGATTGTG-AGAACTTGTACTC--AATA-TTTGGTAATGATCGTATGGA
**
14764400 AACTGATTACTATT-GAAAGTATC-T
381 AACCAATTACTATTAG-AAGTATCTT
* * *
14764424 AAAAAAACATATTGATTGGTTGGAGCTGAGATTCTAGGTAGGTTGGTCTTTTTGAAACTTGTAAC
1 AAAAAAACATATAGATTAGTTGGAGCTGAGATTCTTGGT-GGTTGGTCTTTTTGAAACTTGTAAC
* * * * * *
14764489 CACGTAGGGTAATGTTTGGGCTAGTACTCTCTATCAAAAGGCTGGGAGGAGCTGTCGTAAGTAGA
65 CACGTAGGATAATGTTTGGGCTA-AACTCTCTATCAAAAGGCTGGGAGGAGCTATCATAAGTGGT
* * ** * * *
14764554 TGGGCTAATTAAAGAACAGGGGTGTCAATTACTATAAAGTTAGGTTGAATCGAGAGAGAACCTAT
129 TGGGCTAACTCAAGAACAGGGGTGTCAACAATTGTAAAGTTAGGTTGAATCGAGGGAGAACCTAT
* * *
14764619 GGCTTTTAGTTCAATATTCTCACAAACAGTGCCAATTATTGATGTCTCTTTTGTTGGGCTTGGAT
194 GGCTTTTAGTTTAATATTCTCACAAACAGTGCCAATTGTTGATGTCTCTTTTATTGGGCTTGGA-
* *
14764684 G-CTAGTTGAGCTAAGCTTTATAGCTGAAAAATCTACAAA
258 GACTAGTTGAGCTAA-CTTTATAGCAG-AAAATCGACAAA
14764723 AAAAGGATAA
Statistics
Matches: 577, Mismatches: 115, Indels: 36
0.79 0.16 0.05
Matches are distributed among these distances:
408 4 0.01
409 126 0.22
410 157 0.27
411 2 0.00
412 243 0.42
413 45 0.08
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (405 bp):
AAAAAAACATATAGATTAGTTGGAGCTGAGATTCTTGGTGGTTGGTCTTTTTGAAACTTGTAACC
ACGTAGGATAATGTTTGGGCTAAACTCTCTATCAAAAGGCTGGGAGGAGCTATCATAAGTGGTTG
GGCTAACTCAAGAACAGGGGTGTCAACAATTGTAAAGTTAGGTTGAATCGAGGGAGAACCTATGG
CTTTTAGTTTAATATTCTCACAAACAGTGCCAATTGTTGATGTCTCTTTTATTGGGCTTGGAGAC
TAGTTGAGCTAACTTTATAGCAGAAAATCGACAAAGTATACTAGCAATATGGATAGTCATGGTTG
ATGGTAAAGATGATTGTGAGAACTTGTACTCAATATTTGGTAATGATCGTATGGAAACCAATTAC
TATTAGAAGTATCTT
Found at i:14766651 original size:21 final size:21
Alignment explanation
Indices: 14766625--14766696 Score: 83
Period size: 21 Copynumber: 3.4 Consensus size: 21
14766615 TCATATGAGT
14766625 TTTCGTTCAGCTCTTACGAGC
1 TTTCGTTCAGCTCTTACGAGC
* * * *
14766646 TTTCGTTCAACCCTTATG-GG
1 TTTCGTTCAGCTCTTACGAGC
14766666 TTTCCGTTCAGCTCTTACGAGC
1 TTT-CGTTCAGCTCTTACGAGC
*
14766688 TTCCGTTCA
1 TTTCGTTCA
14766697 ACCCTTATGG
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
20 4 0.10
21 33 0.82
22 3 0.08
ACGTcount: A:0.14, C:0.29, G:0.18, T:0.39
Consensus pattern (21 bp):
TTTCGTTCAGCTCTTACGAGC
Found at i:14766711 original size:42 final size:42
Alignment explanation
Indices: 14766586--14766711 Score: 162
Period size: 42 Copynumber: 3.0 Consensus size: 42
14766576 GTTTACTTTT
* * ** * * * * *
14766586 CGTTTAGCTCTCACGAGCTTCTATTTAACTCATATGAGTTTT
1 CGTTCAGCTCTTACGAGCTTCCGTTCAACCCTTATGGGTTTC
*
14766628 CGTTCAGCTCTTACGAGCTTTCGTTCAACCCTTATGGGTTTC
1 CGTTCAGCTCTTACGAGCTTCCGTTCAACCCTTATGGGTTTC
14766670 CGTTCAGCTCTTACGAGCTTCCGTTCAACCCTTATGGGTTTC
1 CGTTCAGCTCTTACGAGCTTCCGTTCAACCCTTATGGGTTTC
14766712 TGTTTAGTTC
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 73 1.00
ACGTcount: A:0.17, C:0.27, G:0.17, T:0.39
Consensus pattern (42 bp):
CGTTCAGCTCTTACGAGCTTCCGTTCAACCCTTATGGGTTTC
Found at i:14766730 original size:42 final size:42
Alignment explanation
Indices: 14766586--14766730 Score: 155
Period size: 42 Copynumber: 3.5 Consensus size: 42
14766576 GTTTACTTTT
* ** * * * * *
14766586 CGTTTAGCTCTCACGAGCTTCTATTTAACTCATATGAGTTTT
1 CGTTCAGCTCTCACGAGCTTCCGTTCAACCCTTATGGGTTTC
* *
14766628 CGTTCAGCTCTTACGAGCTTTCGTTCAACCCTTATGGGTTTC
1 CGTTCAGCTCTCACGAGCTTCCGTTCAACCCTTATGGGTTTC
*
14766670 CGTTCAGCTCTTACGAGCTTCCGTTCAACCCTTATGGGTTTC
1 CGTTCAGCTCTCACGAGCTTCCGTTCAACCCTTATGGGTTTC
* * * *
14766712 TGTTTAGTTCTCATGAGCT
1 CGTTCAGCTCTCACGAGCT
14766731 ACTATTCAGG
Statistics
Matches: 87, Mismatches: 16, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 87 1.00
ACGTcount: A:0.17, C:0.26, G:0.18, T:0.40
Consensus pattern (42 bp):
CGTTCAGCTCTCACGAGCTTCCGTTCAACCCTTATGGGTTTC
Found at i:14770396 original size:42 final size:43
Alignment explanation
Indices: 14770334--14770490 Score: 144
Period size: 42 Copynumber: 3.7 Consensus size: 43
14770324 TCGTGTTTAC
* * * *
14770334 TTTTCGTTTAGCTCTCACGAGCTTCT-ATTTAACTCATATGAG
1 TTTTCGTTCAGCTCTTACGAGCTTCTCATTCAACCCATATGAG
* * *
14770376 TTTTCGTTCAGCTCTTACGAGCTT-TCGTTCAACCCTTATGGG
1 TTTTCGTTCAGCTCTTACGAGCTTCTCATTCAACCCATATGAG
* * *
14770418 TTTCCGTTCAGCTCTTACGAGCTTC-CGTTCAACCCTTATG-G
1 TTTTCGTTCAGCTCTTACGAGCTTCTCATTCAACCCATATGAG
* * * *
14770459 GTTTCTGTTTAGCTCTCATGAGCTTCT-ATTCA
1 TTTTC-GTTCAGCTCTTACGAGCTTCTCATTCA
14770491 GCCTTCGGGC
Statistics
Matches: 97, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
41 5 0.05
42 92 0.95
ACGTcount: A:0.17, C:0.25, G:0.17, T:0.41
Consensus pattern (43 bp):
TTTTCGTTCAGCTCTTACGAGCTTCTCATTCAACCCATATGAG
Found at i:14770403 original size:21 final size:21
Alignment explanation
Indices: 14770377--14770448 Score: 83
Period size: 21 Copynumber: 3.4 Consensus size: 21
14770367 TCATATGAGT
14770377 TTTCGTTCAGCTCTTACGAGC
1 TTTCGTTCAGCTCTTACGAGC
* * * *
14770398 TTTCGTTCAACCCTTATG-GG
1 TTTCGTTCAGCTCTTACGAGC
14770418 TTTCCGTTCAGCTCTTACGAGC
1 TTT-CGTTCAGCTCTTACGAGC
*
14770440 TTCCGTTCA
1 TTTCGTTCA
14770449 ACCCTTATGG
Statistics
Matches: 40, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
20 4 0.10
21 33 0.82
22 3 0.08
ACGTcount: A:0.14, C:0.29, G:0.18, T:0.39
Consensus pattern (21 bp):
TTTCGTTCAGCTCTTACGAGC
Found at i:14772224 original size:44 final size:44
Alignment explanation
Indices: 14772171--14772254 Score: 114
Period size: 44 Copynumber: 1.9 Consensus size: 44
14772161 TTATTAGTTA
* * * * *
14772171 AAAATTTGTGATAGTTATATATTTAAAAATAATTATAATTTAAT
1 AAAAGTTGTGATAATTACACATTTAAAAATAATTAGAATTTAAT
*
14772215 AAAAGTTGTGATAATTACACGTTTAAAAATAATTAGAATT
1 AAAAGTTGTGATAATTACACATTTAAAAATAATTAGAATT
14772255 CAAATTCAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
44 34 1.00
ACGTcount: A:0.48, C:0.02, G:0.10, T:0.40
Consensus pattern (44 bp):
AAAAGTTGTGATAATTACACATTTAAAAATAATTAGAATTTAAT
Found at i:14779780 original size:2 final size:2
Alignment explanation
Indices: 14779773--14779801 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
14779763 AACACAGCTT
14779773 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
14779802 GTAGAGAACC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:14779958 original size:2 final size:2
Alignment explanation
Indices: 14779951--14779986 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
14779941 TTGATTCCTT
14779951 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
14779987 CCCAATTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:14780823 original size:25 final size:25
Alignment explanation
Indices: 14780782--14780832 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
14780772 GCTTTTAATT
* *
14780782 ATTATTTTCAAGTTTTTCTTTTTTA
1 ATTATTTTCAAGTTTTTATCTTTTA
*
14780807 ATTATTTTTAA-TATTTTATCTTTTA
1 ATTATTTTCAAGT-TTTTATCTTTTA
14780832 A
1 A
14780833 GAGTATCAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (25 bp):
ATTATTTTCAAGTTTTTATCTTTTA
Found at i:14781938 original size:15 final size:15
Alignment explanation
Indices: 14781898--14781938 Score: 57
Period size: 14 Copynumber: 2.8 Consensus size: 15
14781888 TTTGCTCCAC
*
14781898 AAAAATAATTTTTAG
1 AAAAATAAATTTTAG
*
14781913 AAAAA-AGATTTTAG
1 AAAAATAAATTTTAG
14781927 AAAAATAAATTT
1 AAAAATAAATTT
14781939 ATTTTTTACA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
14 12 0.55
15 10 0.45
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (15 bp):
AAAAATAAATTTTAG
Found at i:14787324 original size:39 final size:39
Alignment explanation
Indices: 14787303--14787419 Score: 180
Period size: 39 Copynumber: 3.0 Consensus size: 39
14787293 CCATATTACA
* *
14787303 CATATAACCACATAACCTTTAAGCATATATCACAATACT
1 CATATAATCACATAACATTTAAGCATATATCACAATACT
* *
14787342 CATATAATTACATAACATTCAAGCATATATCACAATACT
1 CATATAATCACATAACATTTAAGCATATATCACAATACT
* *
14787381 CATATAATCACATAACATTCAAGCATACATCACAATACT
1 CATATAATCACATAACATTTAAGCATATATCACAATACT
14787420 AAAAAACATG
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 72 1.00
ACGTcount: A:0.45, C:0.24, G:0.03, T:0.28
Consensus pattern (39 bp):
CATATAATCACATAACATTTAAGCATATATCACAATACT
Found at i:14797745 original size:16 final size:16
Alignment explanation
Indices: 14797724--14797755 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14797714 GTTTTGTTGC
*
14797724 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
14797740 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
14797756 CTTCCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:14797936 original size:46 final size:43
Alignment explanation
Indices: 14797893--14797977 Score: 116
Period size: 46 Copynumber: 1.9 Consensus size: 43
14797883 CATGGTGGAT
*
14797893 TCAGCACACAGCAACCACCCTTTGTAATCAATGATATCCGGTGGGA
1 TCAGCACACAGCAACCA-CC-TTATAATCAATGATA-CCGGTGGGA
* *
14797939 TCAGCACATAGCAACCACCTTATAATTAATGATACCGGT
1 TCAGCACACAGCAACCACCTTATAATCAATGATACCGGT
14797978 TCACATAGTA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 5 0.14
44 13 0.36
45 2 0.06
46 16 0.44
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (43 bp):
TCAGCACACAGCAACCACCTTATAATCAATGATACCGGTGGGA
Found at i:14798037 original size:51 final size:51
Alignment explanation
Indices: 14797979--14798173 Score: 236
Period size: 51 Copynumber: 3.8 Consensus size: 51
14797969 GATACCGGTT
*
14797979 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATA
* * *
14798030 CACATAGTAGCCTGCACATAGTAGTACACACGTGA--TTGAAGCTATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCAT-CA-CTATCCGATA
* * * * * *
14798081 CGCATAGTAGCTTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTATCCGATA
*
14798131 CACGTAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
14798174 TTCACTTTCA
Statistics
Matches: 120, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
49 5 0.04
50 39 0.32
51 74 0.62
53 1 0.01
54 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATA
Found at i:14798150 original size:101 final size:102
Alignment explanation
Indices: 14797981--14798165 Score: 293
Period size: 101 Copynumber: 1.8 Consensus size: 102
14797971 TACCGGTTCA
*
14797981 CATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACATAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACATAGTAGCCTGCA
*
14798046 CATAGTAGTACACACGTGATTGAAGCTATCCGATACG
66 CATAGTACTACACACGTGATTGAAGCTATCCGATACG
* * * *
14798083 CATAGTAGCTTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCCGATACACATAGTAGCCTGC
14798146 ACATAGTACTACACACGTGA
65 ACATAGTACTACACACGTGA
14798166 CCATCACTTT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
101 38 0.50
102 34 0.45
103 4 0.05
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.24
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACATAGTAGCCTGCA
CATAGTACTACACACGTGATTGAAGCTATCCGATACG
Found at i:14805221 original size:17 final size:17
Alignment explanation
Indices: 14805199--14805232 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
14805189 CACTCACATG
*
14805199 AAAATGTAATGACAATA
1 AAAATGCAATGACAATA
14805216 AAAATGCAATGACAATA
1 AAAATGCAATGACAATA
14805233 TATACTTACC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.09, G:0.12, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:14805726 original size:21 final size:20
Alignment explanation
Indices: 14805681--14805747 Score: 61
Period size: 18 Copynumber: 3.5 Consensus size: 20
14805671 TTTTTCTTTT
* *
14805681 TCAGCAACCACTTCCTCTTC
1 TCAGCAACAACTTCATCTTC
14805701 T--GCAACAACTTCATCTTC
1 TCAGCAACAACTTCATCTTC
*
14805719 TACAGCAACAAATTC--CTTC
1 T-CAGCAACAACTTCATCTTC
*
14805738 TCAACAACAA
1 TCAGCAACAA
14805748 TGTCCTCTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
18 24 0.60
19 5 0.12
20 1 0.03
21 10 0.25
ACGTcount: A:0.33, C:0.36, G:0.04, T:0.27
Consensus pattern (20 bp):
TCAGCAACAACTTCATCTTC
Found at i:14824907 original size:29 final size:29
Alignment explanation
Indices: 14824865--14824924 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
14824855 GAAAATTTGG
14824865 ACTGTAGGGGTCACACGGCTGAGACACAC
1 ACTGTAGGGGTCACACGGCTGAGACACAC
14824894 ACTGTAGGGGTCACACGGCTGAGACACAC
1 ACTGTAGGGGTCACACGGCTGAGACACAC
14824923 AC
1 AC
14824925 CCGTGTCTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.28, C:0.28, G:0.30, T:0.13
Consensus pattern (29 bp):
ACTGTAGGGGTCACACGGCTGAGACACAC
Found at i:14829035 original size:28 final size:28
Alignment explanation
Indices: 14828997--14829051 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
14828987 TTACCCTTGT
*
14828997 TCTCCGGTCCTCACTTCTCTTTCCAATC
1 TCTCCAGTCCTCACTTCTCTTTCCAATC
14829025 TCTCCAGTCCTCACTTCTCTTTCCAAT
1 TCTCCAGTCCTCACTTCTCTTTCCAAT
14829052 ATCAATATTC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.13, C:0.42, G:0.05, T:0.40
Consensus pattern (28 bp):
TCTCCAGTCCTCACTTCTCTTTCCAATC
Found at i:14845048 original size:176 final size:176
Alignment explanation
Indices: 14844754--14845111 Score: 565
Period size: 176 Copynumber: 2.0 Consensus size: 176
14844744 ATCTAGATTG
* * *
14844754 GGTTGGGGAGGTTACACTAGAGGAGAAAGGCAAACTAACATTGACCAAAACACTAAGAGATTTAG
1 GGTTGGGGAGGTTACACTAGAGGAGAAAGGCAAACTAACACTAACCAAAACAATAAGAGATTTAG
* * *
14844819 AAACTAACCAAAGATGTTGATTGAGTCTTAACTCAATTGGCATCAGCATTGTTGCCAGTGCAAGA
66 AAACTAACCAAAGATATTGATTGAGTCTTAACTCAATTGGCATCAACATTGTTGCCAATGCAAGA
*
14844884 GGACATGGGTTTGAGTGTGCTGAAGCACATTATCCTCTTATTTAAA
131 GGACATGGGTTTGAGCGTGCTGAAGCACATTATCCTCTTATTTAAA
* * *
14844930 GGTTGGGGAGGTTACACTAGAGGAGAAAGGCAAATTAACACTAACCACAACAATAGGATG-TTTA
1 GGTTGGGGAGGTTACACTAGAGGAGAAAGGCAAACTAACACTAACCAAAACAATAAGA-GATTTA
* *
14844994 GAAACTAACCAAATATATTGATTGAGTCTTAGCTCAATTGGCATCAACATTGTTGCCAATGCAAG
65 GAAACTAACCAAAGATATTGATTGAGTCTTAACTCAATTGGCATCAACATTGTTGCCAATGCAAG
* * *
14845059 AGGACGTGGGTTTGAGCGTGCTGAAGCGCATTATCCTCTTATTTAAG
130 AGGACATGGGTTTGAGCGTGCTGAAGCACATTATCCTCTTATTTAAA
14845106 GGTTGG
1 GGTTGG
14845112 AAAGGGGTTG
Statistics
Matches: 166, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
176 165 0.99
177 1 0.01
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.27
Consensus pattern (176 bp):
GGTTGGGGAGGTTACACTAGAGGAGAAAGGCAAACTAACACTAACCAAAACAATAAGAGATTTAG
AAACTAACCAAAGATATTGATTGAGTCTTAACTCAATTGGCATCAACATTGTTGCCAATGCAAGA
GGACATGGGTTTGAGCGTGCTGAAGCACATTATCCTCTTATTTAAA
Found at i:14845686 original size:13 final size:13
Alignment explanation
Indices: 14845670--14845694 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14845660 TTATTTTCAT
14845670 TTTTTAAAAATTA
1 TTTTTAAAAATTA
14845683 TTTTTAAAAATT
1 TTTTTAAAAATT
14845695 TTAACTGAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTTTAAAAATTA
Found at i:14847519 original size:89 final size:89
Alignment explanation
Indices: 14847416--14847595 Score: 324
Period size: 89 Copynumber: 2.0 Consensus size: 89
14847406 AGTTAGAAAT
14847416 TTTGGTAAACATTAGACATTTTGGTATTGGTATAACGTCATAAATTTTAGTATAAAGTTAAAAAA
1 TTTGGTAAACATTAGACATTTTGGTATTGGTATAACGTCATAAATTTTAGTATAAAGTTAAAAAA
14847481 ATTTATATGTCTATAAGCGCATAG
66 ATTTATATGTCTATAAGCGCATAG
* **
14847505 TTTGGTAAACATTAGACATTTTGGTATTGGTATAGCGTCATAAATTTTAGTATAAAGTTAAAATT
1 TTTGGTAAACATTAGACATTTTGGTATTGGTATAACGTCATAAATTTTAGTATAAAGTTAAAAAA
*
14847570 TTTTATATGTCTATAAGCGCATAG
66 ATTTATATGTCTATAAGCGCATAG
14847594 TT
1 TT
14847596 GAAACCCCGA
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 87 1.00
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.41
Consensus pattern (89 bp):
TTTGGTAAACATTAGACATTTTGGTATTGGTATAACGTCATAAATTTTAGTATAAAGTTAAAAAA
ATTTATATGTCTATAAGCGCATAG
Found at i:14849843 original size:92 final size:92
Alignment explanation
Indices: 14849734--14849917 Score: 368
Period size: 92 Copynumber: 2.0 Consensus size: 92
14849724 TATATATTTT
14849734 TTAAATTATTAAAAATCATATATATCTAATATATATCATTCATATATATTCTAAGTTAGTTTAAG
1 TTAAATTATTAAAAATCATATATATCTAATATATATCATTCATATATATTCTAAGTTAGTTTAAG
14849799 TTTTAATATATATTTAATTCTATTTAA
66 TTTTAATATATATTTAATTCTATTTAA
14849826 TTAAATTATTAAAAATCATATATATCTAATATATATCATTCATATATATTCTAAGTTAGTTTAAG
1 TTAAATTATTAAAAATCATATATATCTAATATATATCATTCATATATATTCTAAGTTAGTTTAAG
14849891 TTTTAATATATATTTAATTCTATTTAA
66 TTTTAATATATATTTAATTCTATTTAA
14849918 AATTGATCCC
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 92 1.00
ACGTcount: A:0.41, C:0.07, G:0.03, T:0.49
Consensus pattern (92 bp):
TTAAATTATTAAAAATCATATATATCTAATATATATCATTCATATATATTCTAAGTTAGTTTAAG
TTTTAATATATATTTAATTCTATTTAA
Found at i:14852673 original size:124 final size:123
Alignment explanation
Indices: 14852482--14852827 Score: 559
Period size: 123 Copynumber: 2.8 Consensus size: 123
14852472 TTTCGAGTTG
* *
14852482 ACGTTTCTAATCAAATAGTATAAAATCGCTTTTAGCTGGATGCTATTTGAGAAGAATTTGTGAAA
1 ACGTTTCTAAGCAAATAGTATAAAATCGCTTCTAGCTGGATGCTATTTGAGAAGAATTTGTGAAA
14852547 TCGCGCCCTCGTGGACGCGCTTTTGCTA-AGTAGGTCATGGAAGAAATAATTTTTTTTTC
66 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGGAAGAAAT--TTTTTTTTTC
* * *
14852606 ACGTTTCTGAGGAAATAGTATAAAATCGCTTCTAGTTGGATGCTATTTGAGAAGAATTTGTGAAA
1 ACGTTTCTAAGCAAATAGTATAAAATCGCTTCTAGCTGGATGCTATTTGAGAAGAATTTGTGAAA
* *
14852671 TCGCGCCCTCGTGGACGCGCTTTTGCTACAATAGGTCATGGAAGAAATTTTTTTTTTG
66 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGGAAGAAATTTTTTTTTTC
* **
14852729 ACGTTTCTAAGCAAATAGTATAAAATGGCTTCTAGCAAGATGCTATTTGAGAAGAATTTGTGAAA
1 ACGTTTCTAAGCAAATAGTATAAAATCGCTTCTAGCTGGATGCTATTTGAGAAGAATTTGTGAAA
* *
14852794 TCGTGCCCTTGTGGACGCGCTTTTGCTACAGTAG
66 TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
14852828 CATGTTTGGG
Statistics
Matches: 205, Mismatches: 16, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
123 99 0.48
124 88 0.43
125 18 0.09
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (123 bp):
ACGTTTCTAAGCAAATAGTATAAAATCGCTTCTAGCTGGATGCTATTTGAGAAGAATTTGTGAAA
TCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCATGGAAGAAATTTTTTTTTTC
Found at i:14857415 original size:22 final size:22
Alignment explanation
Indices: 14857387--14857439 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 22
14857377 TAAGAGGGGA
*
14857387 TAAAATATAAATTTTATGTGGC
1 TAAAATATAAATATTATGTGGC
* *
14857409 TAAAATACAAAATATTATGTGGT
1 TAAAATA-TAAATATTATGTGGC
*
14857432 TGAAATAT
1 TAAAATAT
14857440 GAAAATGACT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
22 7 0.28
23 18 0.72
ACGTcount: A:0.45, C:0.04, G:0.13, T:0.38
Consensus pattern (22 bp):
TAAAATATAAATATTATGTGGC
Found at i:14857438 original size:23 final size:23
Alignment explanation
Indices: 14857387--14857430 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
14857377 TAAGAGGGGA
* *
14857387 TAAAATA-TAAATTTTATGTGGC
1 TAAAATACAAAATATTATGTGGC
14857409 TAAAATACAAAATATTATGTGG
1 TAAAATACAAAATATTATGTGG
14857431 TTGAAATATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.45, C:0.05, G:0.14, T:0.36
Consensus pattern (23 bp):
TAAAATACAAAATATTATGTGGC
Found at i:14858814 original size:27 final size:27
Alignment explanation
Indices: 14858776--14858831 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
14858766 ATTGCTAAAC
14858776 TGCGAACTGTCCCATAGACACCTATAT
1 TGCGAACTGTCCCATAGACACCTATAT
* ** *
14858803 TGCGGACTGTCCTGTGGACACCTATAT
1 TGCGAACTGTCCCATAGACACCTATAT
14858830 TG
1 TG
14858832 TGGAAGGTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (27 bp):
TGCGAACTGTCCCATAGACACCTATAT
Found at i:14858851 original size:27 final size:27
Alignment explanation
Indices: 14858791--14858895 Score: 86
Period size: 27 Copynumber: 3.9 Consensus size: 27
14858781 ACTGTCCCAT
** ** *
14858791 AGACACCTATATTGCGGACTGTCCTGT
1 AGACACCTATATTGTAGAAGGTCCTGC
* * *
14858818 GGACACCTATATTGTGGAAGGTCTTGC
1 AGACACCTATATTGTAGAAGGTCCTGC
* * *
14858845 A-ATCACCTATGTTGCAGAATGTCCTGC
1 AGA-CACCTATATTGTAGAAGGTCCTGC
*
14858872 AGACACCTATATTGTAGAATGTCC
1 AGACACCTATATTGTAGAAGGTCC
14858896 CATAGACATT
Statistics
Matches: 62, Mismatches: 14, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
26 1 0.02
27 60 0.97
28 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.30
Consensus pattern (27 bp):
AGACACCTATATTGTAGAAGGTCCTGC
Found at i:14858902 original size:27 final size:27
Alignment explanation
Indices: 14858783--14858903 Score: 75
Period size: 27 Copynumber: 4.5 Consensus size: 27
14858773 AACTGCGAAC
* *
14858783 TGTCCCATAGACACCTATATTGCGGAC
1 TGTCCCATAGACACCTATATTGCAGAA
** * **
14858810 TGTCCTGTGGACACCTATATTGTGGAA
1 TGTCCCATAGACACCTATATTGCAGAA
* * * *
14858837 GGTCTTGCA-A-TCACCTATGTTGCAGAA
1 TGTC--CCATAGACACCTATATTGCAGAA
*** *
14858864 TGTCCTGCAGACACCTATATTGTAGAA
1 TGTCCCATAGACACCTATATTGCAGAA
14858891 TGTCCCATAGACA
1 TGTCCCATAGACA
14858904 TTTAACCATG
Statistics
Matches: 66, Mismatches: 24, Indels: 8
0.67 0.24 0.08
Matches are distributed among these distances:
26 1 0.02
27 65 0.98
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (27 bp):
TGTCCCATAGACACCTATATTGCAGAA
Done.