Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 53 of 145
Found at i:17279752 original size:28 final size:29
Alignment explanation
Indices: 17279720--17279790 Score: 110
Period size: 28 Copynumber: 2.5 Consensus size: 29
17279710 TTAGTTTTTT
*
17279720 TATATATTTTGGTAAAT-AAAAAAATTTA
1 TATATATTTTGGTAAATAAAAAAAATGTA
17279748 TATATATTTTGGTAAATAAAAAAAATGTA
1 TATATATTTTGGTAAATAAAAAAAATGTA
*
17279777 TA-ACATTTTGGTAA
1 TATATATTTTGGTAA
17279791 TTTTTTATTT
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 28 0.70
29 12 0.30
ACGTcount: A:0.48, C:0.01, G:0.10, T:0.41
Consensus pattern (29 bp):
TATATATTTTGGTAAATAAAAAAAATGTA
Found at i:17286342 original size:41 final size:42
Alignment explanation
Indices: 17286297--17286380 Score: 134
Period size: 42 Copynumber: 2.0 Consensus size: 42
17286287 TTAATTTCTA
* * *
17286297 TAATTCAAATT-AGATGTTTTGGTCCTTCTACTTTTAAAATG
1 TAATTCAAATTGACATGTTTTGATACTTCTACTTTTAAAATG
17286338 TAATTCAAATTGACATGTTTTGATACTTCTACTTTTAAAATG
1 TAATTCAAATTGACATGTTTTGATACTTCTACTTTTAAAATG
17286380 T
1 T
17286381 TATAATCATC
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
41 11 0.28
42 28 0.72
ACGTcount: A:0.31, C:0.12, G:0.11, T:0.46
Consensus pattern (42 bp):
TAATTCAAATTGACATGTTTTGATACTTCTACTTTTAAAATG
Found at i:17289533 original size:76 final size:74
Alignment explanation
Indices: 17289383--17289536 Score: 175
Period size: 76 Copynumber: 2.1 Consensus size: 74
17289373 TCATAAAAGT
* * * * *
17289383 TATTTTATTGTATTTTACATCAATAATATATTTATTTACAATCTAAGAAAAAAATCAAAAAATTA
1 TATTCTATTGTATTTCACATAAATAATATACTTATTTACAATATAAGAAAAAAATCAAAAAATTA
* **
17289448 TTTGTATTG
66 CTTACATTG
* * *
17289457 TATTCTATTGTATTTCATATAAATAATATAGACTTATTTACAATATATGAAAAAAAAT-GAAAAA
1 TATTCTATTGTATTTCACATAAATAATAT--ACTTATTTACAATATAAG-AAAAAAATCAAAAAA
17289521 TTACTTACATTG
63 TTACTTACATTG
17289533 TATT
1 TATT
17289537 TTACATCAAT
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
74 25 0.38
76 33 0.50
77 8 0.12
ACGTcount: A:0.44, C:0.07, G:0.06, T:0.43
Consensus pattern (74 bp):
TATTCTATTGTATTTCACATAAATAATATACTTATTTACAATATAAGAAAAAAATCAAAAAATTA
CTTACATTG
Found at i:17301710 original size:3 final size:3
Alignment explanation
Indices: 17301702--17301729 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
17301692 TTTAAAAACC
17301702 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
17301730 TTAAAAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:17302478 original size:12 final size:12
Alignment explanation
Indices: 17302448--17302504 Score: 78
Period size: 12 Copynumber: 4.6 Consensus size: 12
17302438 CGCCTTCTTC
17302448 TCCCCTTTCCCCTT
1 TCCCCTTT-CCC-T
17302462 TCCCCTTTCCCT
1 TCCCCTTTCCCT
*
17302474 TCCCCTTCCCCT
1 TCCCCTTTCCCT
*
17302486 TCCCTTTTCCCT
1 TCCCCTTTCCCT
17302498 TCCCCTT
1 TCCCCTT
17302505 GGGTTGCAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
12 28 0.72
13 3 0.08
14 8 0.21
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (12 bp):
TCCCCTTTCCCT
Found at i:17302479 original size:6 final size:6
Alignment explanation
Indices: 17302448--17302504 Score: 69
Period size: 6 Copynumber: 9.2 Consensus size: 6
17302438 CGCCTTCTTC
* * *
17302448 TCCCCTT TCCCCTT TCCCCT TTCCCT TCCCCT TCCCCT TCCCTT TTCCCT
1 TCCCC-T TCCCC-T TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT
17302498 TCCCCT T
1 TCCCCT T
17302505 GGGTTGCAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
6 32 0.73
7 12 0.27
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (6 bp):
TCCCCT
Found at i:17302820 original size:11 final size:11
Alignment explanation
Indices: 17302804--17302829 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
17302794 TTGCTGGATG
17302804 ATATTTTGGTT
1 ATATTTTGGTT
17302815 ATATTTTGGTT
1 ATATTTTGGTT
17302826 ATAT
1 ATAT
17302830 ACAGATGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (11 bp):
ATATTTTGGTT
Found at i:17305267 original size:20 final size:20
Alignment explanation
Indices: 17305242--17305281 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
17305232 AATATTTTCC
* *
17305242 AGTAAATCATTTTATAGAAA
1 AGTAAAACATTTTACAGAAA
17305262 AGTAAAACATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
17305282 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.53, C:0.07, G:0.10, T:0.30
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:17305288 original size:14 final size:14
Alignment explanation
Indices: 17305265--17305304 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
17305255 ATAGAAAAGT
17305265 AAAACATTTTACAG
1 AAAACATTTTACAG
* *
17305279 AAATCATTTTACGG
1 AAAACATTTTACAG
17305293 AAAACATTTTAC
1 AAAACATTTTAC
17305305 TGCCAATCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.45, C:0.15, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:17305296 original size:34 final size:35
Alignment explanation
Indices: 17305230--17305296 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
17305220 CAAACACTAG
* * *
17305230 AAAATATTTTCCAGTAAATCATTTTATAGAAAAGT
1 AAAACATTTTACAGTAAATCATTTTACAGAAAAGT
*
17305265 AAAACATTTTACAG-AAATCATTTTACGGAAAA
1 AAAACATTTTACAGTAAATCATTTTACAGAAAA
17305297 CATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.48, C:0.10, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAACATTTTACAGTAAATCATTTTACAGAAAAGT
Found at i:17305606 original size:23 final size:23
Alignment explanation
Indices: 17305579--17305629 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
17305569 AGATTTAAAT
17305579 AAATACTCATA-TTTATATTACTA
1 AAATACTCATATTTTATATTA-TA
* *
17305602 AAATATTTATATTTTATATTATA
1 AAATACTCATATTTTATATTATA
17305625 AAATA
1 AAATA
17305630 TTTTTTAATC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 16 0.64
24 9 0.36
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (23 bp):
AAATACTCATATTTTATATTATA
Found at i:17305738 original size:22 final size:21
Alignment explanation
Indices: 17305696--17305745 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
17305686 ATTTTTTTAA
*
17305696 TATTTTAAAATATTAAAATTT
1 TATTTTAAAATAATAAAATTT
* *
17305717 TATTATTAATATAATAATATTT
1 TATT-TTAAAATAATAAAATTT
*
17305739 GATTTTA
1 TATTTTA
17305746 TTTAAGTTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (21 bp):
TATTTTAAAATAATAAAATTT
Found at i:17306174 original size:21 final size:19
Alignment explanation
Indices: 17306131--17306175 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
17306121 TTATTTTTAT
**
17306131 TTTTTAAATTTAAAATACT
1 TTTTTAAATTTAAAATAAA
17306150 TTTTTAAATTTTTAAAATAAA
1 TTTTTAAA--TTTAAAATAAA
17306171 TTTTT
1 TTTTT
17306176 GGTGTTTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 8 0.36
21 14 0.64
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTTTAAATTTAAAATAAA
Found at i:17307565 original size:14 final size:14
Alignment explanation
Indices: 17307546--17307582 Score: 74
Period size: 14 Copynumber: 2.6 Consensus size: 14
17307536 ACTAGTAATT
17307546 GAATTTAACCAAAA
1 GAATTTAACCAAAA
17307560 GAATTTAACCAAAA
1 GAATTTAACCAAAA
17307574 GAATTTAAC
1 GAATTTAAC
17307583 TGCTTCTGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.54, C:0.14, G:0.08, T:0.24
Consensus pattern (14 bp):
GAATTTAACCAAAA
Found at i:17311754 original size:29 final size:29
Alignment explanation
Indices: 17311669--17311832 Score: 109
Period size: 29 Copynumber: 5.9 Consensus size: 29
17311659 AACACCGTAA
* *
17311669 ATGTGGAAAGTCCGCCAAAACTATCT--T
1 ATGTGGAAAGTCTGCCAGAACTATCTGAT
* *
17311696 ATGTGGAAA-TCCATG--AGGATTATCTGAT
1 ATGTGGAAAGT-C-TGCCAGAACTATCTGAT
17311724 ATGTGGAAAGTCTGCCAGAACTATCTGAT
1 ATGTGGAAAGTCTGCCAGAACTATCTGAT
17311753 ATGTGGAAAGT-TCGCCA-AGACTATCT--T
1 ATGTGGAAAGTCT-GCCAGA-ACTATCTGAT
*** * *
17311780 ATGT-G-AAGTCTATGAGGACTATATGAT
1 ATGTGGAAAGTCTGCCAGAACTATCTGAT
*
17311807 ATGTGGAAAGTCAGCCA-AGACTATCT
1 ATGTGGAAAGTCTGCCAGA-ACTATCT
17311833 TAATATGGGA
Statistics
Matches: 104, Mismatches: 17, Indels: 30
0.69 0.11 0.20
Matches are distributed among these distances:
25 11 0.11
26 10 0.10
27 22 0.21
28 15 0.14
29 46 0.44
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (29 bp):
ATGTGGAAAGTCTGCCAGAACTATCTGAT
Found at i:17311832 original size:83 final size:84
Alignment explanation
Indices: 17311669--17311832 Score: 242
Period size: 83 Copynumber: 2.0 Consensus size: 84
17311659 AACACCGTAA
* *
17311669 ATGTGGAAAGTCCGCCAAAACTATCTTATGTGGAAATCCATGAGGATTATCTGATATGTGGAAAG
1 ATGTGGAAAGTCCGCCAAAACTATCTTATGTGGAAATCCATGAGGACTATATGATATGTGGAAAG
*
17311734 TCTGCCAGAACTATCTGAT
66 TCAGCCAGAACTATCTGAT
* * * *
17311753 ATGTGGAAAGTTCGCCAAGACTATCTTATGT-GAAGTCTATGAGGACTATATGATATGTGGAAAG
1 ATGTGGAAAGTCCGCCAAAACTATCTTATGTGGAAATCCATGAGGACTATATGATATGTGGAAAG
17311817 TCAGCCA-AGACTATCT
66 TCAGCCAGA-ACTATCT
17311833 TAATATGGGA
Statistics
Matches: 72, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
82 1 0.01
83 42 0.58
84 29 0.40
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (84 bp):
ATGTGGAAAGTCCGCCAAAACTATCTTATGTGGAAATCCATGAGGACTATATGATATGTGGAAAG
TCAGCCAGAACTATCTGAT
Found at i:17312889 original size:4 final size:4
Alignment explanation
Indices: 17312880--17312906 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
17312870 ATTTTAGTGT
17312880 TTAA TTAA TTAA TTAA TTAA TTAA TTA
1 TTAA TTAA TTAA TTAA TTAA TTAA TTA
17312907 GGATTAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (4 bp):
TTAA
Found at i:17317115 original size:22 final size:22
Alignment explanation
Indices: 17317090--17317143 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
17317080 CAAGGCGATG
*
17317090 ATGGCATGTTCTATTAGCTTTT
1 ATGGCATATTCTATTAGCTTTT
* *
17317112 ATGGCATATTCTTTTAGTTTTT
1 ATGGCATATTCTATTAGCTTTT
* *
17317134 GTGGCGTATT
1 ATGGCATATT
17317144 TCATATGTTG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.17, C:0.11, G:0.20, T:0.52
Consensus pattern (22 bp):
ATGGCATATTCTATTAGCTTTT
Found at i:17321706 original size:27 final size:27
Alignment explanation
Indices: 17321645--17321707 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
17321635 TAACATCCTA
* *
17321645 ATGGACTATCTCGTTTTTAATATCCCG
1 ATGGACTATCTCATGTTTAATATCCCG
*** *
17321672 ACAAACTATCTCATGTTTAATGTCCCG
1 ATGGACTATCTCATGTTTAATATCCCG
17321699 ATGGACTAT
1 ATGGACTAT
17321708 TTATGGTGCT
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.22, G:0.14, T:0.37
Consensus pattern (27 bp):
ATGGACTATCTCATGTTTAATATCCCG
Found at i:17324006 original size:24 final size:24
Alignment explanation
Indices: 17323964--17324021 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
17323954 ACCGAGGTAA
*
17323964 CTTGTTGG-CTTATCGTAGTAGAC
1 CTTGGTGGCCTTATCGTAGTAGAC
*
17323987 CTTGGTGGCCTTATCTTAGTAGAC
1 CTTGGTGGCCTTATCGTAGTAGAC
17324011 CTTGGTGGCCT
1 CTTGGTGGCCT
17324022 ACTTTTTCGA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 7 0.22
24 25 0.78
ACGTcount: A:0.14, C:0.21, G:0.28, T:0.38
Consensus pattern (24 bp):
CTTGGTGGCCTTATCGTAGTAGAC
Found at i:17333338 original size:55 final size:55
Alignment explanation
Indices: 17333279--17333390 Score: 197
Period size: 55 Copynumber: 2.0 Consensus size: 55
17333269 ATGATAAGAT
* *
17333279 AATGATGATAAATGAAATAAATAATTAAAATAAGTCATTTTTCATCATCTTTCCC
1 AATGATGATAAAAGAAACAAATAATTAAAATAAGTCATTTTTCATCATCTTTCCC
*
17333334 AATGATGATAAAAGAAACAAATAATTAAAATAAGTCATTTTTCATTATCTTTCCC
1 AATGATGATAAAAGAAACAAATAATTAAAATAAGTCATTTTTCATCATCTTTCCC
17333389 AA
1 AA
17333391 ATAAAAACAT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.35
Consensus pattern (55 bp):
AATGATGATAAAAGAAACAAATAATTAAAATAAGTCATTTTTCATCATCTTTCCC
Found at i:17334271 original size:49 final size:48
Alignment explanation
Indices: 17334194--17334289 Score: 115
Period size: 49 Copynumber: 2.0 Consensus size: 48
17334184 TATATATATA
*
17334194 GCTCTTATGAGCATCCCGATTAAAGGCTCTC-TGGAGCTTCCCGATTATG
1 GCTCTTATGAGCATCCCGATTAAAGGCTCACAT-GAGCTTCCCG-TTATG
* * *
17334243 GCTCTTATGAGC-TTCCTATTACATGGCTCACATGAGCTTCCCGTTAT
1 GCTCTTATGAGCATCCCGATTA-AAGGCTCACATGAGCTTCCCGTTAT
17334290 ATGGCACGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
48 11 0.27
49 29 0.71
50 1 0.02
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (48 bp):
GCTCTTATGAGCATCCCGATTAAAGGCTCACATGAGCTTCCCGTTATG
Found at i:17334293 original size:25 final size:25
Alignment explanation
Indices: 17334227--17334294 Score: 75
Period size: 25 Copynumber: 2.8 Consensus size: 25
17334217 AGGCTCTCTG
* **
17334227 GAGCTTCCCGAT-TATGGCTCTTAT
1 GAGCTTCCCGTTATATGGCTCACAT
** *
17334251 GAGCTTCCTATTACATGGCTCACAT
1 GAGCTTCCCGTTATATGGCTCACAT
17334276 GAGCTTCCCGTTATATGGC
1 GAGCTTCCCGTTATATGGC
17334295 ACGAGAGAGA
Statistics
Matches: 34, Mismatches: 9, Indels: 1
0.77 0.20 0.02
Matches are distributed among these distances:
24 9 0.26
25 25 0.74
ACGTcount: A:0.19, C:0.26, G:0.21, T:0.34
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGGCTCACAT
Found at i:17338359 original size:16 final size:16
Alignment explanation
Indices: 17338313--17338365 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 16
17338303 ACAACGGATA
17338313 AAAGAGAAAACATGAT
1 AAAGAGAAAACATGAT
**** *
17338329 AAAGATTCCATATGAT
1 AAAGAGAAAACATGAT
17338345 AAAGAGAAAACATGAT
1 AAAGAGAAAACATGAT
17338361 AAAGA
1 AAAGA
17338366 CAACGGAAGT
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.58, C:0.08, G:0.17, T:0.17
Consensus pattern (16 bp):
AAAGAGAAAACATGAT
Found at i:17350865 original size:29 final size:30
Alignment explanation
Indices: 17350806--17350872 Score: 102
Period size: 29 Copynumber: 2.3 Consensus size: 30
17350796 ATTTAAAAAA
*
17350806 CAATAAATTTATTTCAGAAATAAAAACAAT
1 CAATAAATTTATTTCAGAAAAAAAAACAAT
17350836 CAATAAATTT-TGTTCA-AAAAAAAAACAAT
1 CAATAAATTTAT-TTCAGAAAAAAAAACAAT
17350865 CAATAAAT
1 CAATAAAT
17350873 AATAGTGAGA
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
29 21 0.60
30 14 0.40
ACGTcount: A:0.58, C:0.10, G:0.03, T:0.28
Consensus pattern (30 bp):
CAATAAATTTATTTCAGAAAAAAAAACAAT
Found at i:17351669 original size:2 final size:2
Alignment explanation
Indices: 17351664--17351688 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
17351654 ATTTTTTTTC
17351664 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
17351689 GAAATAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:17354543 original size:2 final size:2
Alignment explanation
Indices: 17354536--17354560 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
17354526 ACCATCCTTT
17354536 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
17354561 TTGAAGTTAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:17355518 original size:86 final size:85
Alignment explanation
Indices: 17355376--17355542 Score: 210
Period size: 86 Copynumber: 2.0 Consensus size: 85
17355366 GTAAAAGGCT
* * * * * ** * *
17355376 CTTAATTTTTTCAAAAAAGTAATTCAACCCCTTTTTTTTTTGCGCTGGATTGGGTACTTGAACTT
1 CTTAATTTTTTCAAAAAAGCAATTAAACCCCCTTTCTTTTTGCACTCAATTAGGTACTT-AAATT
* *
17355441 -TTAAAATGCATCAAAAGACC
65 GTCAAAATGCATAAAAAGACC
17355461 CTTAATTTTTTCAAAAAAAGCAATTAAACCCCCTTTCTTTTTGCACTCAATTAGGTACTTAAATT
1 CTTAATTTTTTC-AAAAAAGCAATTAAACCCCCTTTCTTTTTGCACTCAATTAGGTACTTAAATT
17355526 GTCAAAATGCATAAAAA
65 GTCAAAATGCATAAAAA
17355543 AAATACTCTT
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
85 16 0.23
86 53 0.77
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (85 bp):
CTTAATTTTTTCAAAAAAGCAATTAAACCCCCTTTCTTTTTGCACTCAATTAGGTACTTAAATTG
TCAAAATGCATAAAAAGACC
Found at i:17366129 original size:18 final size:18
Alignment explanation
Indices: 17366106--17366148 Score: 86
Period size: 18 Copynumber: 2.4 Consensus size: 18
17366096 CCTGGTCACG
17366106 CCAATGGCATTGGCGGCA
1 CCAATGGCATTGGCGGCA
17366124 CCAATGGCATTGGCGGCA
1 CCAATGGCATTGGCGGCA
17366142 CCAATGG
1 CCAATGG
17366149 TGCCAATACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.23, C:0.28, G:0.33, T:0.16
Consensus pattern (18 bp):
CCAATGGCATTGGCGGCA
Found at i:17366226 original size:4 final size:4
Alignment explanation
Indices: 17366217--17366373 Score: 94
Period size: 4 Copynumber: 37.8 Consensus size: 4
17366207 GAAGGAGAGG
* *
17366217 GAAA GAAA GAAA GAAA GGAGAG GAAA GAAA GGTAAA GAAG GAAA GAAAA
1 GAAA GAAA GAAA GAAA -GA-AA GAAA GAAA -G-AAA GAAA GAAA G-AAA
* *
17366266 GTAAA G-GA GAAGA GAAA AAAA GAAA GAAA GAAA G-AA G-AA GAAAA GGAAAA
1 G-AAA GAAA GAA-A GAAA GAAA GAAA GAAA GAAA GAAA GAAA G-AAA -G-AAA
* *
17366316 GAGAA GAAA -AAA GAAA GAAA GAAG GAAA GAAA GGAAA G-GA GAAGA GAAA
1 GA-AA GAAA GAAA GAAA GAAA GAAA GAAA GAAA -GAAA GAAA GAA-A GAAA
17366365 -AAA -AAA GAA
1 GAAA GAAA GAA
17366374 GAGGGAAGGA
Statistics
Matches: 124, Mismatches: 13, Indels: 32
0.73 0.08 0.19
Matches are distributed among these distances:
3 19 0.15
4 63 0.51
5 33 0.27
6 9 0.07
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (4 bp):
GAAA
Found at i:17366235 original size:23 final size:23
Alignment explanation
Indices: 17366208--17366360 Score: 95
Period size: 23 Copynumber: 6.7 Consensus size: 23
17366198 GGTGGGGCAG
*
17366208 AAGGAGAGGGAAAGAAAGAAAGA
1 AAGGAGAAGGAAAGAAAGAAAGA
17366231 AAGGAG-AGGAAAGAAAGGTAAAG-
1 AAGGAGAAGGAAAGAAA-G-AAAGA
* *
17366254 AAGGA-AAGAAAAGTAAAG-GAG-
1 AAGGAGAAGGAAAG-AAAGAAAGA
**
17366275 AA-GAGAAAAAAAGAAAGAAAGA
1 AAGGAGAAGGAAAGAAAGAAAGA
* *
17366297 AAGAAGAAGAAAAGGAAAAGAGAAGA
1 AAGGAGAAGGAAA-G-AAAGA-AAGA
** * *
17366323 AAAAAGAAAGAAAGAAGGAAAGA
1 AAGGAGAAGGAAAGAAAGAAAGA
17366346 AAGGA-AAGGAGAAGA
1 AAGGAGAAGGA-AAGA
17366361 GAAAAAAAAA
Statistics
Matches: 104, Mismatches: 14, Indels: 24
0.73 0.10 0.17
Matches are distributed among these distances:
20 6 0.06
21 13 0.12
22 15 0.14
23 38 0.37
24 12 0.12
25 6 0.06
26 14 0.13
ACGTcount: A:0.66, C:0.00, G:0.33, T:0.01
Consensus pattern (23 bp):
AAGGAGAAGGAAAGAAAGAAAGA
Found at i:17366242 original size:18 final size:16
Alignment explanation
Indices: 17366221--17366353 Score: 101
Period size: 18 Copynumber: 7.8 Consensus size: 16
17366211 GAGAGGGAAA
17366221 GAAAGAAAGAAAGGAGAG
1 GAAAGAAAGAAA-GA-AG
17366239 GAAAGAAAGGTAAAGAAG
1 GAAAGAAA-G-AAAGAAG
*
17366257 GAAAGAAAAGTAAAGGA-
1 GAAAG-AAAG-AAAGAAG
* *
17366274 GAAGAGAAAAAAAGAAA
1 GAA-AGAAAGAAAGAAG
17366291 GAAAGAAAG-AAGAAG
1 GAAAGAAAGAAAGAAG
*
17366306 AAAAGGAAAAGAGAAGAA-
1 GAAA-G-AAAGA-AAGAAG
*
17366324 AAAAGAAAGAAAGAAG
1 GAAAGAAAGAAAGAAG
17366340 GAAAGAAAGGAAAG
1 GAAAGAAA-GAAAG
17366354 GAGAAGAGAA
Statistics
Matches: 97, Mismatches: 7, Indels: 23
0.76 0.06 0.18
Matches are distributed among these distances:
15 13 0.13
16 23 0.24
17 19 0.20
18 28 0.29
19 11 0.11
20 3 0.03
ACGTcount: A:0.68, C:0.00, G:0.31, T:0.02
Consensus pattern (16 bp):
GAAAGAAAGAAAGAAG
Found at i:17366271 original size:5 final size:5
Alignment explanation
Indices: 17366258--17366404 Score: 54
Period size: 5 Copynumber: 28.8 Consensus size: 5
17366248 GTAAAGAAGG
* *
17366258 AAAGA AAAGTA AAGGA GAAGA GAAA-A AAAG- AAAG- AAAG- AAAGA AGAAGA
1 AAAGA AAAG-A AAAGA AAAGA -AAAGA AAAGA AAAGA AAAGA AAAGA A-AAGA
* * * *
17366307 AAAGGA AAAGA GAAGA AAAAA GAAAGAA AGAAGG AAAGA AAGGA AAGGAGA
1 AAA-GA AAAGA AAAGA AAAGA -AAAG-A A-AAGA AAAGA AAAGA AA--AGA
* * * * * * *
17366358 AGAGA AAAAA AAAGA AGAGG GAAGG AAGGA AAA-A AAAGA AAA-A AAAG
1 AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAGA AAAG
17366405 GTAATTTTAT
Statistics
Matches: 105, Mismatches: 24, Indels: 26
0.68 0.15 0.17
Matches are distributed among these distances:
4 23 0.22
5 54 0.51
6 21 0.20
7 7 0.07
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.01
Consensus pattern (5 bp):
AAAGA
Found at i:17366292 original size:38 final size:37
Alignment explanation
Indices: 17366221--17366368 Score: 140
Period size: 38 Copynumber: 3.8 Consensus size: 37
17366211 GAGAGGGAAA
*
17366221 GAAAGAAA-GAAAGGAG-AG-GAAAGAAAGGTAAAGAAG
1 GAAAGAAAGGAAAGGAGAAGAGAAA-AAAAG-AAAGAAG
*
17366257 GAAAGAAAAGTAAAGGAGAAGAGAAAAAAAGAAAGAAAG
1 GAAAG-AAAGGAAAGGAGAAGAGAAAAAAAGAAAG-AAG
* *
17366296 AAAGAAGAAGAAAAGGAAAAGAGAAGAAAAAAGAAAGAAAGAAG
1 ---G-A-AAG-AAAGGAAAGGAGAAGAGAAAA-AAAGAAAGAAG
17366340 GAAAGAAAGGAAAGGAGAAGAGAAAAAAA
1 GAAAGAAAGGAAAGGAGAAGAGAAAAAAA
17366369 AAGAAGAGGG
Statistics
Matches: 94, Mismatches: 7, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
36 5 0.05
37 6 0.06
38 30 0.32
39 12 0.13
40 5 0.05
41 1 0.01
42 1 0.01
43 1 0.01
44 25 0.27
45 8 0.09
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.01
Consensus pattern (37 bp):
GAAAGAAAGGAAAGGAGAAGAGAAAAAAAGAAAGAAG
Found at i:17367284 original size:22 final size:22
Alignment explanation
Indices: 17367259--17367302 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
17367249 TGATATTTTT
*
17367259 TAAAGTAATAAAATGCGGAGAA
1 TAAAGTAACAAAATGCGGAGAA
17367281 TAAAGTAACAAAATGCGGAGAA
1 TAAAGTAACAAAATGCGGAGAA
17367303 AAAAATACGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.55, C:0.07, G:0.23, T:0.16
Consensus pattern (22 bp):
TAAAGTAACAAAATGCGGAGAA
Found at i:17367592 original size:7 final size:8
Alignment explanation
Indices: 17367563--17367589 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
17367553 GAAATAATAT
17367563 AAAATTAG
1 AAAATTAG
17367571 AAAATTAG
1 AAAATTAG
17367579 AAAATTAG
1 AAAATTAG
17367587 AAA
1 AAA
17367590 TTATGATATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.11, T:0.22
Consensus pattern (8 bp):
AAAATTAG
Found at i:17370100 original size:34 final size:34
Alignment explanation
Indices: 17370061--17370130 Score: 122
Period size: 34 Copynumber: 2.1 Consensus size: 34
17370051 CACATGGTAT
17370061 TTTATAACTTAATCTGGAAACAATTTGGATACAA
1 TTTATAACTTAATCTGGAAACAATTTGGATACAA
* *
17370095 TTTATAACTTAATCTGTATACAATTTGGATACAA
1 TTTATAACTTAATCTGGAAACAATTTGGATACAA
17370129 TT
1 TT
17370131 ACCTTTTATA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.40
Consensus pattern (34 bp):
TTTATAACTTAATCTGGAAACAATTTGGATACAA
Found at i:17373170 original size:19 final size:21
Alignment explanation
Indices: 17373146--17373184 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
17373136 ACTAAAACAA
*
17373146 AAAAT-ATTACAA-AATATAC
1 AAAATAATAACAACAATATAC
17373165 AAAATAATAACAACAATATA
1 AAAATAATAACAACAATATA
17373185 ATCAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 6 0.35
21 6 0.35
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (21 bp):
AAAATAATAACAACAATATAC
Found at i:17373363 original size:27 final size:27
Alignment explanation
Indices: 17373317--17373393 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
17373307 AATACGAATA
17373317 GTGCCGCCAAT--CAATATGGCACCATTG
1 GTGCCGCCAATGGC-AT-TGGCACCATTG
17373344 GTGCCGCCAATGGCATTGGCACCATTG
1 GTGCCGCCAATGGCATTGGCACCATTG
* **
17373371 GTACCGCCAATGGTTTTGGCACC
1 GTGCCGCCAATGGCATTGGCACC
17373394 TTGACCAAGG
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
27 42 0.93
28 2 0.04
29 1 0.02
ACGTcount: A:0.21, C:0.30, G:0.26, T:0.23
Consensus pattern (27 bp):
GTGCCGCCAATGGCATTGGCACCATTG
Found at i:17373516 original size:27 final size:22
Alignment explanation
Indices: 17373452--17373496 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
17373442 TGTTTTTTTG
17373452 ATATATTTTGGTAAATAAAAAA
1 ATATATTTTGGTAAATAAAAAA
17373474 ATATATTTTGGTAAATAAAAAA
1 ATATATTTTGGTAAATAAAAAA
17373496 A
1 A
17373497 GTTATAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.36
Consensus pattern (22 bp):
ATATATTTTGGTAAATAAAAAA
Found at i:17375817 original size:27 final size:22
Alignment explanation
Indices: 17375753--17375797 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
17375743 TGTTTTTTTG
17375753 ATATATTTTGGTAAATAAAAAA
1 ATATATTTTGGTAAATAAAAAA
17375775 ATATATTTTGGTAAATAAAAAA
1 ATATATTTTGGTAAATAAAAAA
17375797 A
1 A
17375798 GTTATAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.36
Consensus pattern (22 bp):
ATATATTTTGGTAAATAAAAAA
Found at i:17376122 original size:153 final size:154
Alignment explanation
Indices: 17375844--17376150 Score: 607
Period size: 153 Copynumber: 2.0 Consensus size: 154
17375834 TATTTTTGTA
17375844 AAAAACCCGGGAAAGTATCTATAATTTTTTTAAAAACTGAATATATTTTAATATACAAATTAAAT
1 AAAAACCCGGGAAAGTATCTATAATTTTTTTAAAAACTGAATATATTTTAATATACAAATTAAAT
17375909 AAATAATTAAATAAAGGGGGAGGACAATGATCCCTAATTACATCACCAGCCTATGATTAATATCT
66 AAATAATTAAATAAAGGGGGAGGACAATGATCCCTAATTACATCACCAGCCTATGATTAATATCT
17375974 ACCTCCATTTT-AATTTCCCGCTG
131 ACCTCCATTTTAAATTTCCCGCTG
17375997 AAAAACCCGGGAAAGTATCTATAATTTTTTTAAAAACTGAATATATTTTAATATACAAATTAAAT
1 AAAAACCCGGGAAAGTATCTATAATTTTTTTAAAAACTGAATATATTTTAATATACAAATTAAAT
17376062 AAATAATTAAATAAAGGGGGAGGACAATGATCCCTAATTACATCACCAGCCTATGATTAATATCT
66 AAATAATTAAATAAAGGGGGAGGACAATGATCCCTAATTACATCACCAGCCTATGATTAATATCT
17376127 ACCTCCATTTTAAATTTCCCGCTG
131 ACCTCCATTTTAAATTTCCCGCTG
17376151 TCACTAATTA
Statistics
Matches: 153, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
153 141 0.92
154 12 0.08
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (154 bp):
AAAAACCCGGGAAAGTATCTATAATTTTTTTAAAAACTGAATATATTTTAATATACAAATTAAAT
AAATAATTAAATAAAGGGGGAGGACAATGATCCCTAATTACATCACCAGCCTATGATTAATATCT
ACCTCCATTTTAAATTTCCCGCTG
Found at i:17381820 original size:18 final size:17
Alignment explanation
Indices: 17381799--17381834 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
17381789 TTTAATGCAA
17381799 TATTATATATTAAAATTT
1 TATTATA-ATTAAAATTT
*
17381817 TATTTTAATTAAAATTT
1 TATTATAATTAAAATTT
17381834 T
1 T
17381835 CAAAAATAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TATTATAATTAAAATTT
Found at i:17388445 original size:21 final size:22
Alignment explanation
Indices: 17388421--17388462 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
17388411 TGATTTTTTA
17388421 AAATATTAAAATATT-AATATC
1 AAATATTAAAATATTCAATATC
*
17388442 AAATATTATAATATTCAATAT
1 AAATATTAAAATATTCAATAT
17388463 TATTTAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (22 bp):
AAATATTAAAATATTCAATATC
Found at i:17388509 original size:19 final size:19
Alignment explanation
Indices: 17388480--17388537 Score: 68
Period size: 19 Copynumber: 3.1 Consensus size: 19
17388470 AATACATGTT
17388480 AAATT-ATTTATATTTAATA
1 AAATTAATTTAT-TTTAATA
*
17388499 ATA-TAATTTATTATTAATA
1 AAATTAATTTATT-TTAATA
17388518 AAATTAA-TTATTTTAATA
1 AAATTAATTTATTTTAATA
17388536 AA
1 AA
17388538 TTNNNNNNNN
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
18 10 0.29
19 21 0.62
20 3 0.09
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
AAATTAATTTATTTTAATA
Found at i:17389321 original size:17 final size:18
Alignment explanation
Indices: 17389301--17389338 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
17389291 TTTATATATG
*
17389301 ATATTAAT-TATTATAGA
1 ATATTAATGTATTATAAA
17389318 ATATTAATGTATTATAAA
1 ATATTAATGTATTATAAA
17389336 ATA
1 ATA
17389339 AATTTTGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 8 0.42
18 11 0.58
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (18 bp):
ATATTAATGTATTATAAA
Found at i:17389960 original size:22 final size:23
Alignment explanation
Indices: 17389907--17389962 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
17389897 CCCGTTTTTA
* * *
17389907 ATTAAAATTAAAATTATTTTTTT
1 ATTAAAATTAAAACTATATTGTT
*
17389930 AATAAAATTAAAACTA-ATTGTT
1 ATTAAAATTAAAACTATATTGTT
17389952 ATTAAAATTAA
1 ATTAAAATTAA
17389963 TTGTTAGTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTAAAATTAAAACTATATTGTT
Found at i:17389975 original size:16 final size:16
Alignment explanation
Indices: 17389938--17389977 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
17389928 TTAATAAAAT
* *
17389938 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
17389954 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
17389970 TAAAATTA
1 TAAAATTA
17389978 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:17393883 original size:23 final size:25
Alignment explanation
Indices: 17393857--17393904 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
17393847 TCAATTTTTT
17393857 TAATTAAA-ATATTAATA-AATATC
1 TAATTAAATATATTAATATAATATC
17393880 TAATTAAATTATATTAATATAATAT
1 TAATTAAA-TATATTAATATAATAT
17393905 TTTTTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 8 0.36
25 9 0.41
26 5 0.23
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (25 bp):
TAATTAAATATATTAATATAATATC
Found at i:17395495 original size:20 final size:21
Alignment explanation
Indices: 17395450--17395495 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
17395440 AATCTCTTAA
17395450 TCTTTTAGTGGTTGCTTTGTG
1 TCTTTTAGTGGTTGCTTTGTG
* * *
17395471 T-TTTTGGTGTTTTCTTTGT-
1 TCTTTTAGTGGTTGCTTTGTG
17395490 TCTTTT
1 TCTTTT
17395496 CCAGATTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
19 1 0.05
20 19 0.90
21 1 0.05
ACGTcount: A:0.02, C:0.09, G:0.22, T:0.67
Consensus pattern (21 bp):
TCTTTTAGTGGTTGCTTTGTG
Found at i:17399066 original size:20 final size:21
Alignment explanation
Indices: 17399037--17399080 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
17399027 GAACAAAAAA
17399037 AAAAGAAGGAAGA-GAAGAAG
1 AAAAGAAGGAAGAGGAAGAAG
* * *
17399057 AAAAGTAGGATGAGGAGGAAG
1 AAAAGAAGGAAGAGGAAGAAG
17399078 AAA
1 AAA
17399081 TTGAAGATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
20 11 0.55
21 9 0.45
ACGTcount: A:0.59, C:0.00, G:0.36, T:0.05
Consensus pattern (21 bp):
AAAAGAAGGAAGAGGAAGAAG
Found at i:17413475 original size:21 final size:21
Alignment explanation
Indices: 17413449--17413490 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
17413439 GTAATTTTGT
17413449 AATTAAA-TGGAAATTAAAACA
1 AATTAAAGT-GAAATTAAAACA
17413470 AATTAAAGTGAAATTAAAACA
1 AATTAAAGTGAAATTAAAACA
17413491 TTTTAACTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.24
Consensus pattern (21 bp):
AATTAAAGTGAAATTAAAACA
Found at i:17414444 original size:33 final size:33
Alignment explanation
Indices: 17414400--17414469 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 33
17414390 TACACTATGT
* *
17414400 TTGGTGTGTTGGTTAGATTAGCTCTTATGAGCA
1 TTGGTGCGTTGGTTAGATTAACTCTTATGAGCA
*
17414433 TTGGTGCGTTGGTTGGATTAACTCTTATGAGCA
1 TTGGTGCGTTGGTTAGATTAACTCTTATGAGCA
17414466 TTGG
1 TTGG
17414470 AGTGATGGAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.17, C:0.10, G:0.31, T:0.41
Consensus pattern (33 bp):
TTGGTGCGTTGGTTAGATTAACTCTTATGAGCA
Found at i:17414484 original size:33 final size:33
Alignment explanation
Indices: 17414415--17414484 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
17414405 GTGTTGGTTA
* * * **
17414415 GATTAGCTCTTATGAGCATTGGTGCGTTGGTTG
1 GATTAACTCTTATGAGCATTGGAGCGATGGAGG
*
17414448 GATTAACTCTTATGAGCATTGGAGTGATGGAGG
1 GATTAACTCTTATGAGCATTGGAGCGATGGAGG
17414481 GATT
1 GATT
17414485 GGCTCATGTG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.21, C:0.10, G:0.33, T:0.36
Consensus pattern (33 bp):
GATTAACTCTTATGAGCATTGGAGCGATGGAGG
Found at i:17414969 original size:11 final size:10
Alignment explanation
Indices: 17414938--17414971 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
17414928 TATTATACAA
17414938 AAGAAACGGT
1 AAGAAACGGT
*
17414948 AAGAAAAGGT
1 AAGAAACGGT
17414958 AATGAAACGGT
1 AA-GAAACGGT
17414969 AAG
1 AAG
17414972 TTCATAATTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.53, C:0.06, G:0.29, T:0.12
Consensus pattern (10 bp):
AAGAAACGGT
Found at i:17416183 original size:13 final size:13
Alignment explanation
Indices: 17416165--17416202 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
17416155 ACACGGGCGT
17416165 GTGTCTCAGCCGA
1 GTGTCTCAGCCGA
17416178 GTGTCTCAGCCGA
1 GTGTCTCAGCCGA
17416191 GTGTCTCAGCCG
1 GTGTCTCAGCCG
17416203 TGTGAGTTAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.13, C:0.32, G:0.32, T:0.24
Consensus pattern (13 bp):
GTGTCTCAGCCGA
Found at i:17418051 original size:11 final size:11
Alignment explanation
Indices: 17418020--17418055 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
17418010 AAGTGAACGT
*
17418020 AAGAAAAGCTA
1 AAGAAAAACTA
17418031 AAGTAAAAACTA
1 AAG-AAAAACTA
17418043 AAGAAAAACTA
1 AAGAAAAACTA
17418054 AA
1 AA
17418056 AATTTAAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 13 0.57
12 10 0.43
ACGTcount: A:0.69, C:0.08, G:0.11, T:0.11
Consensus pattern (11 bp):
AAGAAAAACTA
Found at i:17442945 original size:18 final size:21
Alignment explanation
Indices: 17442922--17442959 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
17442912 TTCTCTTTTT
17442922 AATT-AAT-TTATA-ATAAAA
1 AATTAAATATTATATATAAAA
17442940 AATTAAATATTATATATAAA
1 AATTAAATATTATATATAAA
17442960 TTAGAGAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 3 0.18
20 5 0.29
21 5 0.29
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
AATTAAATATTATATATAAAA
Found at i:17449534 original size:6 final size:6
Alignment explanation
Indices: 17449520--17449607 Score: 115
Period size: 6 Copynumber: 14.3 Consensus size: 6
17449510 GAAGTACGAG
* * *
17449520 AAAAGA AAAATA AAACA-A AACAACTA AAAATA AAAATA AACATA AACATA
1 AAAATA AAAATA AAA-ATA AA-AA-TA AAAATA AAAATA AAAATA AAAATA
17449570 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AA
17449608 CAAATAAAAT
Statistics
Matches: 75, Mismatches: 3, Indels: 8
0.87 0.03 0.09
Matches are distributed among these distances:
6 68 0.91
7 4 0.05
8 3 0.04
ACGTcount: A:0.80, C:0.06, G:0.01, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:17451310 original size:5 final size:5
Alignment explanation
Indices: 17451296--17451340 Score: 51
Period size: 5 Copynumber: 9.4 Consensus size: 5
17451286 ATTAATAAAG
*
17451296 AAATA AAATA CAATA AAAT- -AATA AAATA ATAAT- AAATA AAATA AA
1 AAATA AAATA AAATA AAATA AAATA AAATA A-AATA AAATA AAATA AA
17451341 TAGGAAAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
3 3 0.09
4 3 0.09
5 25 0.74
6 3 0.09
ACGTcount: A:0.76, C:0.02, G:0.00, T:0.22
Consensus pattern (5 bp):
AAATA
Found at i:17451310 original size:18 final size:16
Alignment explanation
Indices: 17451289--17451342 Score: 65
Period size: 18 Copynumber: 3.2 Consensus size: 16
17451279 AAAATGAATT
17451289 AATAAAGAAATAAAATA
1 AATAAA-AAATAAAATA
17451306 CAATAAAATAATAAAAT-
1 -AATAAAA-AATAAAATA
*
17451323 AATAATAAATAAAATA
1 AATAAAAAATAAAATA
17451339 AATA
1 AATA
17451343 GGAAAATAGG
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
15 8 0.24
16 10 0.30
17 1 0.03
18 14 0.42
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.22
Consensus pattern (16 bp):
AATAAAAAATAAAATA
Found at i:17451312 original size:10 final size:9
Alignment explanation
Indices: 17451296--17451342 Score: 57
Period size: 8 Copynumber: 5.6 Consensus size: 9
17451286 ATTAATAAAG
17451296 AAATAAAAT
1 AAATAAAAT
17451305 ACAATAAAAT
1 A-AATAAAAT
17451315 -AATAAAAT
1 AAATAAAAT
17451323 -AAT--AAT
1 AAATAAAAT
17451329 AAATAAAAT
1 AAATAAAAT
17451338 AAATA
1 AAATA
17451343 GGAAAATAGG
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
6 3 0.09
7 3 0.09
8 11 0.32
9 9 0.26
10 8 0.24
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.23
Consensus pattern (9 bp):
AAATAAAAT
Found at i:17451315 original size:23 final size:22
Alignment explanation
Indices: 17451289--17451340 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 22
17451279 AAAATGAATT
17451289 AATAAAGAAATAA-AATACAATAA
1 AATAAA-AAATAATAATA-AATAA
17451312 AATAATAAAATAATAATAAATAA
1 AATAA-AAAATAATAATAAATAA
17451335 AATAAA
1 AATAAA
17451341 TAGGAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 1 0.04
23 21 0.78
24 5 0.19
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (22 bp):
AATAAAAAATAATAATAAATAA
Found at i:17458058 original size:12 final size:12
Alignment explanation
Indices: 17458041--17458082 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
17458031 AATTAGAATG
*
17458041 TAAAAATTAAAC
1 TAAAAATTAAAA
*
17458053 TAAAAACTAAAA
1 TAAAAATTAAAA
*
17458065 T-AAAATAAAAA
1 TAAAAATTAAAA
17458076 TAAAAAT
1 TAAAAAT
17458083 AAATGGCTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
11 9 0.36
12 16 0.64
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (12 bp):
TAAAAATTAAAA
Found at i:17458073 original size:17 final size:17
Alignment explanation
Indices: 17458041--17458085 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
17458031 AATTAGAATG
*
17458041 TAAAAATTAAACTAAAAA
1 TAAAAA-TAAAATAAAAA
17458059 CT-AAAATAAAATAAAAA
1 -TAAAAATAAAATAAAAA
17458076 TAAAAATAAA
1 TAAAAATAAA
17458086 TGGCTAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 1 0.04
17 18 0.75
18 4 0.17
19 1 0.04
ACGTcount: A:0.76, C:0.04, G:0.00, T:0.20
Consensus pattern (17 bp):
TAAAAATAAAATAAAAA
Found at i:17459650 original size:19 final size:19
Alignment explanation
Indices: 17459626--17459662 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
17459616 GAGTCAGGCA
17459626 TACGGGTCATCAAAACAAT
1 TACGGGTCATCAAAACAAT
*
17459645 TACGGGTCATCGAAACAA
1 TACGGGTCATCAAAACAA
17459663 CAGAAAATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.19
Consensus pattern (19 bp):
TACGGGTCATCAAAACAAT
Found at i:17461014 original size:5 final size:5
Alignment explanation
Indices: 17461000--17461029 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
17460990 GTTTCTCTCC
17461000 CTTTT C-TTT CTTTT CTTTT CTTTT CTTTT C
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT C
17461030 CCTGGTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (5 bp):
CTTTT
Found at i:17462061 original size:2 final size:2
Alignment explanation
Indices: 17462054--17462082 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
17462044 TTTGTTATTT
17462054 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
17462083 TAAGATGAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:17462461 original size:11 final size:12
Alignment explanation
Indices: 17462429--17462466 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
17462419 GGGGGTAGGA
17462429 ATCTGCATCTAT
1 ATCTGCATCTAT
*
17462441 ATCTAC-TCTAT
1 ATCTGCATCTAT
17462452 -TCTGCATCTAT
1 ATCTGCATCTAT
17462463 ATCT
1 ATCT
17462467 TATATGTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 4 0.18
11 10 0.45
12 8 0.36
ACGTcount: A:0.24, C:0.26, G:0.05, T:0.45
Consensus pattern (12 bp):
ATCTGCATCTAT
Found at i:17462476 original size:22 final size:22
Alignment explanation
Indices: 17462430--17462479 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
17462420 GGGGTAGGAA
*
17462430 TCTGCATCTATATCTACTCTAT
1 TCTGCATCTATATCTACTATAT
*
17462452 TCTGCATCTATATCTTA-TATGT
1 TCTGCATCTATATC-TACTATAT
17462474 TCTGCA
1 TCTGCA
17462480 ACTGTACCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 23 0.92
23 2 0.08
ACGTcount: A:0.22, C:0.24, G:0.08, T:0.46
Consensus pattern (22 bp):
TCTGCATCTATATCTACTATAT
Found at i:17469441 original size:17 final size:17
Alignment explanation
Indices: 17469408--17469441 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
17469398 ATTCACAAAT
*
17469408 TATTTTTATAATATATA
1 TATTTTTACAATATATA
*
17469425 TATTTTTACAATTTATA
1 TATTTTTACAATATATA
17469442 ATATAATAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (17 bp):
TATTTTTACAATATATA
Found at i:17473221 original size:6 final size:6
Alignment explanation
Indices: 17473212--17473236 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
17473202 CCTTAATCAT
17473212 AATTAC AATTAC AATTAC AATTAC A
1 AATTAC AATTAC AATTAC AATTAC A
17473237 TAACCATACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (6 bp):
AATTAC
Found at i:17487813 original size:109 final size:108
Alignment explanation
Indices: 17487622--17487843 Score: 399
Period size: 109 Copynumber: 2.0 Consensus size: 108
17487612 GGTTTAATTT
* *
17487622 CTAAAAATGATGGGAGAGAATGATGACTGGAGTGTAAAACCCCTGACTACATCGCAGAAGGGCAA
1 CTAAAAATGACGGGAGAGAATGATGACTGGAGTGTAAAACCCCTGACTACATCGCAGAAGGGAAA
17487687 ACGCCCTGGTCAGAGTAGTAATACGGGTGTAAATCACAGTGGTG
66 ACGCCCTGGTCAGAGTAGTAATAC-GGTGTAAATCACAGTGGTG
17487731 CTAAAAATGACGGGAGAGAATGATGACTGGAGTGTAAAACCCCTGACTACATCGCAGAAGGGAAA
1 CTAAAAATGACGGGAGAGAATGATGACTGGAGTGTAAAACCCCTGACTACATCGCAGAAGGGAAA
* *
17487796 ACGCCGTGGTCAGAGTAGTAATACGGTGTAAATCGCAGTGGTG
66 ACGCCCTGGTCAGAGTAGTAATACGGTGTAAATCACAGTGGTG
17487839 CTAAA
1 CTAAA
17487844 GACACGACTA
Statistics
Matches: 109, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
108 23 0.21
109 86 0.79
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (108 bp):
CTAAAAATGACGGGAGAGAATGATGACTGGAGTGTAAAACCCCTGACTACATCGCAGAAGGGAAA
ACGCCCTGGTCAGAGTAGTAATACGGTGTAAATCACAGTGGTG
Found at i:17491442 original size:50 final size:50
Alignment explanation
Indices: 17491323--17491564 Score: 324
Period size: 50 Copynumber: 4.8 Consensus size: 50
17491313 NNNNNNNNNN
* ** *
17491323 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * * ** ***
17491374 TGCCCATGCAATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTTA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
17491424 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
** *
17491474 TGCCAACGCCATGTCCCAGGTATGATCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
17491524 TGCCAACGCCATGTCCCTGAC-TGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
17491565 TTACCCAAAT
Statistics
Matches: 166, Mismatches: 25, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
49 19 0.11
50 114 0.69
51 33 0.20
ACGTcount: A:0.20, C:0.31, G:0.22, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:17497678 original size:63 final size:64
Alignment explanation
Indices: 17497579--17497705 Score: 247
Period size: 63 Copynumber: 2.0 Consensus size: 64
17497569 ATGTCAATCT
17497579 GATATAATAGAACACTTCTTTACCCGTCAAATTACATATCACTAAACTCATAG-AACTTAATAA
1 GATATAATAGAACACTTCTTTACCCGTCAAATTACATATCACTAAACTCATAGAAACTTAATAA
17497642 GATATAATAGAACACTTCTTTACCCGTCAAATTACATATCACTAAACTCATAGAAACTTAATAA
1 GATATAATAGAACACTTCTTTACCCGTCAAATTACATATCACTAAACTCATAGAAACTTAATAA
17497706 TAATTATATA
Statistics
Matches: 63, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
63 53 0.84
64 10 0.16
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.30
Consensus pattern (64 bp):
GATATAATAGAACACTTCTTTACCCGTCAAATTACATATCACTAAACTCATAGAAACTTAATAA
Found at i:17497731 original size:2 final size:2
Alignment explanation
Indices: 17497726--17497755 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
17497716 TACGAAATGA
17497726 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
17497756 GCTTAACAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:17498307 original size:41 final size:41
Alignment explanation
Indices: 17498262--17498397 Score: 200
Period size: 41 Copynumber: 3.3 Consensus size: 41
17498252 GCAATTAGCT
* * * *
17498262 TGCTAGACTTAAAGTCCGAATTATTTCACCGGCCTTAAACC
1 TGCTAGACTTTAAGTCTGAATTATATCATCGGCCTTAAACC
* * *
17498303 TGCTAGACTTTAAGTCTGAATTATATCATTGGCGTTAAGCC
1 TGCTAGACTTTAAGTCTGAATTATATCATCGGCCTTAAACC
*
17498344 TGCTAGACTTTAAGTCTGAATTATATCATCAGCCTTAAACC
1 TGCTAGACTTTAAGTCTGAATTATATCATCGGCCTTAAACC
17498385 TGCTAGACTTTAA
1 TGCTAGACTTTAA
17498398 AAATTTCAAT
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 84 1.00
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.34
Consensus pattern (41 bp):
TGCTAGACTTTAAGTCTGAATTATATCATCGGCCTTAAACC
Found at i:17505665 original size:17 final size:18
Alignment explanation
Indices: 17505640--17505677 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
17505630 TTATTTCCTG
17505640 TTTTCAG-TTTAGTTTAT
1 TTTTCAGTTTTAGTTTAT
* *
17505657 TTTTGAGTTTTATTTTAT
1 TTTTCAGTTTTAGTTTAT
17505675 TTT
1 TTT
17505678 GTTTAATTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.16, C:0.03, G:0.11, T:0.71
Consensus pattern (18 bp):
TTTTCAGTTTTAGTTTAT
Found at i:17510432 original size:27 final size:27
Alignment explanation
Indices: 17510388--17510449 Score: 81
Period size: 28 Copynumber: 2.3 Consensus size: 27
17510378 GAGCCCTATT
*
17510388 CAGTAACAGTACAGTGT-GGCCTTAGCC
1 CAGT-ACAGTACAATGTGGGCCTTAGCC
17510415 CAGTACAGTAACAATGTGGGCCTTAGCC
1 CAGTACAGT-ACAATGTGGGCCTTAGCC
*
17510443 CAATACA
1 CAGTACA
17510450 ATATCAGTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
26 5 0.16
27 10 0.32
28 16 0.52
ACGTcount: A:0.31, C:0.26, G:0.23, T:0.21
Consensus pattern (27 bp):
CAGTACAGTACAATGTGGGCCTTAGCC
Found at i:17510573 original size:26 final size:26
Alignment explanation
Indices: 17510539--17510645 Score: 135
Period size: 26 Copynumber: 4.1 Consensus size: 26
17510529 AACACACCAA
* *
17510539 TATCACAGCAAAGCTGCCCGTAATAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
* *
17510565 TATCGCAGCAAAGCTACTAGTAATAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
*
17510591 TATCGCAGCAAAGCTGCCAAT-ATCAG
1 TATCGCAGCAAAGCTGCCAGTAAT-AG
* *
17510617 TATCGCAGCAAAGTTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
17510643 TAT
1 TAT
17510646 ACTTCCTCCA
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
25 2 0.03
26 66 0.96
27 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAATAG
Found at i:17513095 original size:18 final size:18
Alignment explanation
Indices: 17513074--17513113 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
17513064 AGGATCTGTG
* *
17513074 TCTGCATTTGTATCTGAA
1 TCTGAATTTGCATCTGAA
*
17513092 TCTGAATTTGCATCTGTA
1 TCTGAATTTGCATCTGAA
17513110 TCTG
1 TCTG
17513114 TATCTGATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.20, C:0.17, G:0.17, T:0.45
Consensus pattern (18 bp):
TCTGAATTTGCATCTGAA
Found at i:17513118 original size:12 final size:12
Alignment explanation
Indices: 17513067--17513119 Score: 52
Period size: 12 Copynumber: 4.4 Consensus size: 12
17513057 ATAGGGTAGG
*
17513067 ATCTGTGTCTGC
1 ATCTGTATCTGC
* *
17513079 ATTTGTATCTGA
1 ATCTGTATCTGC
* *
17513091 ATCTGAATTTGC
1 ATCTGTATCTGC
*
17513103 ATCTGTATCTGT
1 ATCTGTATCTGC
17513115 ATCTG
1 ATCTG
17513120 ATTATGAAAA
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.19, C:0.17, G:0.19, T:0.45
Consensus pattern (12 bp):
ATCTGTATCTGC
Found at i:17517114 original size:20 final size:20
Alignment explanation
Indices: 17517089--17517136 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
17517079 TATGCTCTAA
*
17517089 CATCTTGTTGCTGTTGAGGG
1 CATCTTGCTGCTGTTGAGGG
17517109 CATCTTGCTGCTGTTGAGGG
1 CATCTTGCTGCTGTTGAGGG
*
17517129 CGTCTTGC
1 CATCTTGC
17517137 GTGATCAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.08, C:0.21, G:0.33, T:0.38
Consensus pattern (20 bp):
CATCTTGCTGCTGTTGAGGG
Found at i:17523547 original size:22 final size:22
Alignment explanation
Indices: 17523504--17523552 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
17523494 AGATAAGAGT
* *
17523504 CATAAACAGGATAGCTATAAGC
1 CATAAACAGAATAGCTACAAGC
*
17523526 TATAAACAGAAT-GACTACAAGC
1 CATAAACAGAATAG-CTACAAGC
17523548 CATAA
1 CATAA
17523553 GTACAGTAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 1 0.05
22 21 0.95
ACGTcount: A:0.49, C:0.18, G:0.14, T:0.18
Consensus pattern (22 bp):
CATAAACAGAATAGCTACAAGC
Found at i:17523683 original size:31 final size:32
Alignment explanation
Indices: 17523544--17523713 Score: 157
Period size: 32 Copynumber: 5.4 Consensus size: 32
17523534 GAATGACTAC
* * * *
17523544 AAGCCATAAGT-ACAGTAATGTGATTGGCACA
1 AAGCCATCAGTAACGGTAATATGATCGGCACA
* * *** * *
17523575 AAGCTATCATTAGTAGTGATATGAGCGGCACA
1 AAGCCATCAGTAACGGTAATATGATCGGCACA
* *
17523607 CAA-CCATCAGTAACAGTAAAATGATCGGCACA
1 -AAGCCATCAGTAACGGTAATATGATCGGCACA
* * *
17523639 TAGCCATCGGTAACGGTAATATGATAGGC-CA
1 AAGCCATCAGTAACGGTAATATGATCGGCACA
*
17523670 AAGCCATCAGTAACGGTACTATGATCGGCACA
1 AAGCCATCAGTAACGGTAATATGATCGGCACA
17523702 AAGCCATCAGTA
1 AAGCCATCAGTA
17523714 GCATCGCAGT
Statistics
Matches: 110, Mismatches: 25, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
31 36 0.33
32 72 0.65
33 2 0.02
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.21
Consensus pattern (32 bp):
AAGCCATCAGTAACGGTAATATGATCGGCACA
Found at i:17523787 original size:27 final size:27
Alignment explanation
Indices: 17523757--17523820 Score: 78
Period size: 27 Copynumber: 2.4 Consensus size: 27
17523747 AACAAAGCTG
* *
17523757 CCAGTAATAGT-ATATGTGGCTAAGCCA
1 CCAGTAACAGTGAT-TGTGGCAAAGCCA
17523784 CCAGTAACAGTGATTGTGGCAAAGCCA
1 CCAGTAACAGTGATTGTGGCAAAGCCA
*
17523811 TCAGT-ACAGT
1 CCAGTAACAGT
17523821 ACTTCCTCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.15
27 26 0.79
28 2 0.06
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.23
Consensus pattern (27 bp):
CCAGTAACAGTGATTGTGGCAAAGCCA
Found at i:17524026 original size:27 final size:27
Alignment explanation
Indices: 17523988--17524111 Score: 137
Period size: 27 Copynumber: 4.7 Consensus size: 27
17523978 GGCAAAAATA
17523988 GTCA-TTTA-CCTACCA-GGGCATTACG
1 GTCATTTTACCCTA-CAGGGGCATTACG
* * *
17524013 GTCATTTTACCCTACATGGGTATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
*
17524040 GTCATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
17524067 ATTATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
17524094 ATCATTTTACTCTACAGG
1 GTCATTTTACCCTACAGG
17524112 TACCCTATAA
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
25 4 0.05
26 6 0.07
27 75 0.88
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:17526373 original size:20 final size:21
Alignment explanation
Indices: 17526351--17526398 Score: 73
Period size: 20 Copynumber: 2.4 Consensus size: 21
17526341 TTTTTTGTCT
*
17526351 TTATTTATTTATT-TTTATTT
1 TTATTTATTTATTATTTATAT
17526371 TTATTTATTTATTATTTATAT
1 TTATTTATTTATTATTTATAT
17526392 TT-TTTAT
1 TTATTTAT
17526399 GCTTTAGGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 18 0.69
21 8 0.31
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (21 bp):
TTATTTATTTATTATTTATAT
Found at i:17526375 original size:16 final size:17
Alignment explanation
Indices: 17526354--17526398 Score: 67
Period size: 16 Copynumber: 2.8 Consensus size: 17
17526344 TTTGTCTTTA
17526354 TTTATTTATTT-TTATT
1 TTTATTTATTTATTATT
17526370 TTTATTTATTTATTATT
1 TTTATTTATTTATTATT
*
17526387 TATATTT-TTTAT
1 TTTATTTATTTAT
17526399 GCTTTAGGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 16 0.59
17 11 0.41
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTATTTATTTATTATT
Found at i:17526398 original size:24 final size:24
Alignment explanation
Indices: 17526350--17526395 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
17526340 TTTTTTTGTC
*
17526350 TTTATTTATTTATTTTTATTTTTA
1 TTTATTTATTTATTTATATTTTTA
17526374 TTTATTTA-TTATTTATATTTTT
1 TTTATTTATTTATTTATATTTTT
17526396 TATGCTTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 13 0.62
24 8 0.38
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (24 bp):
TTTATTTATTTATTTATATTTTTA
Found at i:17527500 original size:13 final size:13
Alignment explanation
Indices: 17527427--17527502 Score: 59
Period size: 13 Copynumber: 5.7 Consensus size: 13
17527417 CCAAATAAGT
17527427 AATAAATAAT-AA
1 AATAAATAATAAA
17527439 AATAAAATAAAGTAATA
1 AAT-AAAT-AA-TAA-A
*
17527456 AATAAAGTAA-AGA
1 AATAAA-TAATAAA
* *
17527469 AAGAAA-AATAAT
1 AATAAATAATAAA
17527481 AATAAATAATAAA
1 AATAAATAATAAA
17527494 AATAAATAA
1 AATAAATAA
17527503 AAACAAAAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 15
0.70 0.08 0.21
Matches are distributed among these distances:
11 2 0.04
12 9 0.18
13 24 0.48
14 3 0.06
15 1 0.02
16 6 0.12
17 5 0.10
ACGTcount: A:0.74, C:0.00, G:0.05, T:0.21
Consensus pattern (13 bp):
AATAAATAATAAA
Found at i:17538758 original size:43 final size:42
Alignment explanation
Indices: 17538620--17538770 Score: 133
Period size: 42 Copynumber: 3.5 Consensus size: 42
17538610 AATGTGTTAT
** * * *
17538620 CGTGTAAGACCACATCTGGGACATTAGCATCG-ATTTGAGATTTA
1 CGTGTAAGACCATGTCTGGGACAATGGCATCGTATAT--GA-TTA
* * *
17538664 TGTGTAAGACCATGTCTGGGACATTGGCGTCGTATATGATTA
1 CGTGTAAGACCATGTCTGGGACAATGGCATCGTATATGATTA
* * *
17538706 CGTGTAAGACCCTGTCTGGGAGAATGGCATCGATATTTGATTA
1 CGTGTAAGACCATGTCTGGGACAATGGCATCG-TATATGATTA
* * *
17538749 CTTGTAAGACCACGTTTGGGAC
1 CGTGTAAGACCATGTCTGGGAC
17538771 GTTGGCATTG
Statistics
Matches: 88, Mismatches: 17, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
42 30 0.34
43 28 0.32
44 27 0.31
45 3 0.03
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (42 bp):
CGTGTAAGACCATGTCTGGGACAATGGCATCGTATATGATTA
Found at i:17538777 original size:43 final size:43
Alignment explanation
Indices: 17538622--17538778 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 43
17538612 TGTGTTATCG
* * *
17538622 TGTAAGACCACATCTGGGACATTAGCATCGAT-TTGAGATTTA-T
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATT-TGA-TTACT
* * * *
17538665 GTGTAAGACCATGTCTGGGACATTGGCGTCG-TATATGATTACG
1 -TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACT
* *
17538708 TGTAAGACC-CTGTCTGGGAGAATGGCATCGATATTTGATTACT
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTACT
* *
17538751 TGTAAGACCACGTTTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
17538779 TGTACGAGCT
Statistics
Matches: 91, Mismatches: 17, Indels: 11
0.76 0.14 0.09
Matches are distributed among these distances:
42 28 0.31
43 35 0.38
44 28 0.31
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACT
Found at i:17542968 original size:72 final size:73
Alignment explanation
Indices: 17542869--17543006 Score: 233
Period size: 72 Copynumber: 1.9 Consensus size: 73
17542859 TTTTCAAACT
* * *
17542869 CAAGTTTTAAACGATCTCGGGAATTAAGAAGAGATCGTGTCCTAACTTACTGGGCATGAT-CCTT
1 CAAGTTTTAAACGATCTCGAGAATTAAGAAAACATCGTGTCCTAACTTACTGGGCATGATACCTT
17542933 TTTTTCCC
66 TTTTTCCC
*
17542941 CAAGTTTTAAACGATCTCGAGAATTAAGAAAACATCGTGTCCTAACTTACTGGGCGTGATACCTT
1 CAAGTTTTAAACGATCTCGAGAATTAAGAAAACATCGTGTCCTAACTTACTGGGCATGATACCTT
17543006 T
66 T
17543007 CTCTAAAATC
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
72 56 0.92
73 5 0.08
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (73 bp):
CAAGTTTTAAACGATCTCGAGAATTAAGAAAACATCGTGTCCTAACTTACTGGGCATGATACCTT
TTTTTCCC
Found at i:17543343 original size:106 final size:107
Alignment explanation
Indices: 17543153--17543355 Score: 311
Period size: 106 Copynumber: 1.9 Consensus size: 107
17543143 AAAAATAATA
* * *
17543153 AAGGCAATATTTTGCATTTGGGAATTCGGGAAAGCGTGCCCTAATGTGTTGGGTTTCGATTTTTT
1 AAGGCAATATTTTGCATTTAGAAATTCGGGAAAGCGTGCCCTAATGTGCTGGGTTTCGATTTTTT
*
17543218 CGTTCGACCAAATAACCAAATATCCT-TTAAAATTTTAGAGT
66 CGTTCAACCAAATAACCAAATATCCTCTTAAAATTTTAGAGT
*
17543259 AAGGCAATATTTTGCGTTTAGAAATTCGAGGAAA-CGTGCCCTAATGTGCTGGGTTTCGATTTTT
1 AAGGCAATATTTTGCATTTAGAAATTCG-GGAAAGCGTGCCCTAATGTGCTGGGTTTCGATTTTT
* * *
17543323 TCGTTTAACCAAATAGCCAAATATTCTCTTAAA
65 TCGTTCAACCAAATAACCAAATATCCTCTTAAA
17543356 TCTTAATCCA
Statistics
Matches: 87, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
106 77 0.89
107 10 0.11
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (107 bp):
AAGGCAATATTTTGCATTTAGAAATTCGGGAAAGCGTGCCCTAATGTGCTGGGTTTCGATTTTTT
CGTTCAACCAAATAACCAAATATCCTCTTAAAATTTTAGAGT
Found at i:17545001 original size:25 final size:25
Alignment explanation
Indices: 17544955--17545002 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
17544945 CACGCCACAG
* *
17544955 CTCTTATGAGCTTCCTATTATTTAT
1 CTCTTATGAGCATCCGATTATTTAT
17544980 CTCTTATGAGCATCTCGA-TATTT
1 CTCTTATGAGCATC-CGATTATTT
17545003 GGCTCTCACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 18 0.90
26 2 0.10
ACGTcount: A:0.21, C:0.21, G:0.10, T:0.48
Consensus pattern (25 bp):
CTCTTATGAGCATCCGATTATTTAT
Found at i:17545008 original size:25 final size:25
Alignment explanation
Indices: 17544953--17545008 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
17544943 GACACGCCAC
* *
17544953 AGCTCTTATGAGCTTCCTATTATTT
1 AGCTCTTATGAGCATCCGATTATTT
*
17544978 ATCTCTTATGAGCATCTCGA-TATTT
1 AGCTCTTATGAGCATC-CGATTATTT
*
17545003 GGCTCT
1 AGCTCT
17545009 CACAGCTTTC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
25 23 0.92
26 2 0.08
ACGTcount: A:0.20, C:0.21, G:0.14, T:0.45
Consensus pattern (25 bp):
AGCTCTTATGAGCATCCGATTATTT
Found at i:17545152 original size:49 final size:48
Alignment explanation
Indices: 17545002--17545189 Score: 152
Period size: 49 Copynumber: 3.9 Consensus size: 48
17544992 TCTCGATATT
* * * *
17545002 TGGCTCTCA-CAGCTTTCCGTTTAGTGGCTCTCTTGAGCTTCCCATTTA
1 TGGCTCTCATGAGCTTCCCGATTAATGGCTCTCTTGAGCTTCCCA-TTA
* * ** *
17545050 TGGATCAT-ATGAGCTTCCTGA-TAATTGGCTC-CCGGAGCTTCCCAATATT
1 TGGCTC-TCATGAGCTTCCCGATTAA-TGGCTCTCTTGAGCTTCCC-AT-TA
17545099 TGGCTCTCATGAGCTTCCCGATTAATGGCTCTCTTGAGCTTCCCGATTA
1 TGGCTCTCATGAGCTTCCCGATTAATGGCTCTCTTGAGCTTCCC-ATTA
* * * * *
17545148 TGGCTTTCATGAGTTTCCCG-TAACATGGCTCACATGAGCTTC
1 TGGCTCTCATGAGCTTCCCGATTA-ATGGCTCTCTTGAGCTTC
17545190 TTGTTATATG
Statistics
Matches: 111, Mismatches: 20, Indels: 17
0.75 0.14 0.11
Matches are distributed among these distances:
48 22 0.20
49 74 0.67
50 15 0.14
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (48 bp):
TGGCTCTCATGAGCTTCCCGATTAATGGCTCTCTTGAGCTTCCCATTA
Found at i:17545160 original size:24 final size:24
Alignment explanation
Indices: 17545002--17545189 Score: 132
Period size: 25 Copynumber: 7.7 Consensus size: 24
17544992 TCTCGATATT
* * *
17545002 TGGCTCTCA-CAGCTTTCCGTTTA
1 TGGCTCTCATGAGCTTCCCGATTA
*
17545025 GTGGCTCTCTTGAGCTTCCC-ATTTA
1 -TGGCTCTCATGAGCTTCCCGA-TTA
* * *
17545050 TGGATCAT-ATGAGCTTCCTGATAA
1 TGGCTC-TCATGAGCTTCCCGATTA
** * *
17545074 TTGGCTC-CCGGAGCTTCCCAATATT
1 -TGGCTCTCATGAGCTTCCCGAT-TA
17545099 TGGCTCTCATGAGCTTCCCGATTAA
1 TGGCTCTCATGAGCTTCCCGATT-A
*
17545124 TGGCTCTCTTGAGCTTCCCGATTA
1 TGGCTCTCATGAGCTTCCCGATTA
* * **
17545148 TGGCTTTCATGAGTTTCCCGTAACA
1 TGGCTCTCATGAGCTTCCCG-ATTA
*
17545173 TGGCTCACATGAGCTTC
1 TGGCTCTCATGAGCTTC
17545190 TTGTTATATG
Statistics
Matches: 126, Mismatches: 28, Indels: 19
0.73 0.16 0.11
Matches are distributed among these distances:
24 59 0.47
25 67 0.53
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (24 bp):
TGGCTCTCATGAGCTTCCCGATTA
Found at i:17548579 original size:18 final size:18
Alignment explanation
Indices: 17548552--17548592 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
17548542 ACGAATAATT
17548552 AATAAATACAAATAAG-C
1 AATAAATACAAATAAGAC
*
17548569 AATACAATACACATAAGAC
1 AATA-AATACAAATAAGAC
17548588 AATAA
1 AATAA
17548593 GCTCACATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 4 0.19
18 12 0.57
19 5 0.24
ACGTcount: A:0.63, C:0.15, G:0.05, T:0.17
Consensus pattern (18 bp):
AATAAATACAAATAAGAC
Found at i:17550510 original size:50 final size:49
Alignment explanation
Indices: 17550456--17550715 Score: 149
Period size: 50 Copynumber: 5.2 Consensus size: 49
17550446 CGCCATCATG
17550456 GCTTTAATCTGTTCCACTACACCGCCAGGAAAGTAAGATTCGCTGTTGTA
1 GCTTTAATCTGTTCCACTACACCGCC-GGAAAGTAAGATTCGCTGTTGTA
* ** * * * * * *
17550506 GCTTTAATCTTTTTAACTGCAATTTCG-GGGAAA-CAGGATTCG-TCGTTAT-
1 GCTTTAATCTGTTCCACTAC-A--CCGCCGGAAAGTAAGATTCGCT-GTTGTA
* *
17550555 GACTTTAATTTGTTCCACTACACCGCCTGAGAAGTAAGATTCGCTGTTGTA
1 G-CTTTAATCTGTTCCACTACACCGCCGGA-AAGTAAGATTCGCTGTTGTA
* ** * * * * * *
17550606 GCTTTAATCTTTTTAACTGCAATTTCG-GGGAAA-CAGGATTCG-TCGTTAT-
1 GCTTTAATCTGTTCCACTAC-A--CCGCCGGAAAGTAAGATTCGCT-GTTGTA
* *
17550655 GACTTTAATTTGTTCCACTACACCGCCTGAGAAGTAAGATTCGCTGTTGTA
1 G-CTTTAATCTGTTCCACTACACCGCCGGA-AAGTAAGATTCGCTGTTGTA
17550706 GCTTTAATCT
1 GCTTTAATCT
17550716 TTCTAACTGC
Statistics
Matches: 147, Mismatches: 43, Indels: 40
0.64 0.19 0.17
Matches are distributed among these distances:
47 4 0.03
48 4 0.03
49 10 0.07
50 110 0.75
51 13 0.09
52 2 0.01
53 4 0.03
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (49 bp):
GCTTTAATCTGTTCCACTACACCGCCGGAAAGTAAGATTCGCTGTTGTA
Found at i:17550744 original size:50 final size:50
Alignment explanation
Indices: 17550490--17550765 Score: 147
Period size: 50 Copynumber: 5.5 Consensus size: 50
17550480 CCAGGAAAGT
* * *
17550490 AAGATTCGCTGTTGT-AGCTTTAATCTTTTTAACTGCAATTTCGGGGAAAC
1 AAGATTCGCTGTTGTGA-CTTTAATCTTTCTAACTGCAATGTCGGGAAAAC
* * * * * ** ** **
17550540 AGGATTCG-TCGTTATGACTTTAATTTGTTC-CACTACACCG-CCTGAGAAGT
1 AAGATTCGCT-GTTGTGACTTTAATCT-TTCTAACTGCAATGTCGGGA-AAAC
* * *
17550590 AAGATTCGCTGTTGT-AGCTTTAATCTTTTTAACTGCAATTTCGGGGAAAC
1 AAGATTCGCTGTTGTGA-CTTTAATCTTTCTAACTGCAATGTCGGGAAAAC
* * * * * ** ** **
17550640 AGGATTCG-TCGTTATGACTTTAATTTGTTC-CACTACACCG-CCTGAGAAGT
1 AAGATTCGCT-GTTGTGACTTTAATCT-TTCTAACTGCAATGTCGGGA-AAAC
17550690 AAGATTCGCTGTTGT-AGCTTTAATCTTTCTAACTGCAATGTCGGGAAAAC
1 AAGATTCGCTGTTGTGA-CTTTAATCTTTCTAACTGCAATGTCGGGAAAAC
*
17550740 AAGATTCGCCGTTGTGACTTTAATCT
1 AAGATTCGCTGTTGTGACTTTAATCT
17550766 GCTCACCACA
Statistics
Matches: 155, Mismatches: 54, Indels: 34
0.64 0.22 0.14
Matches are distributed among these distances:
49 13 0.08
50 128 0.83
51 14 0.09
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (50 bp):
AAGATTCGCTGTTGTGACTTTAATCTTTCTAACTGCAATGTCGGGAAAAC
Found at i:17550747 original size:100 final size:100
Alignment explanation
Indices: 17550317--17550793 Score: 568
Period size: 100 Copynumber: 4.8 Consensus size: 100
17550307 CTTCAGTCTG
* * * * * * * *
17550317 TTTAACTGCAATGTCGGGGAAATAAGATTCACTGTTGT-AGCTTTAATCTATTCCACTGCACCGT
1 TTTAACTGCAATTTCGGGGAAACAAGATTCGCCGTTATGA-CTTTAATCTGTTCCACTACACCGC
* * * * * *
17550381 C-AAGGAAGTAAAATTTG-TCGTTGTGGCTTCAATCTA
65 CTGA-GAAGTAAGATTCGCT-GTTGTAGCTTTAATCTT
* * * * * *
17550417 TTTAATTGCAATATCAGGGAAACAAGATTCGCCATCATGGCTTTAATCTGTTCCACTACACCGCC
1 TTTAACTGCAATTTCGGGGAAACAAGATTCGCCGTTATGACTTTAATCTGTTCCACTACACCGCC
*
17550482 AG-GAAAGTAAGATTCGCTGTTGTAGCTTTAATCTT
66 TGAG-AAGTAAGATTCGCTGTTGTAGCTTTAATCTT
* * *
17550517 TTTAACTGCAATTTCGGGGAAACAGGATTCGTCGTTATGACTTTAATTTGTTCCACTACACCGCC
1 TTTAACTGCAATTTCGGGGAAACAAGATTCGCCGTTATGACTTTAATCTGTTCCACTACACCGCC
17550582 TGAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTT
66 TGAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTT
* * *
17550617 TTTAACTGCAATTTCGGGGAAACAGGATTCGTCGTTATGACTTTAATTTGTTCCACTACACCGCC
1 TTTAACTGCAATTTCGGGGAAACAAGATTCGCCGTTATGACTTTAATCTGTTCCACTACACCGCC
17550682 TGAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTT
66 TGAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTT
* * * * * * *
17550717 TCTAACTGCAATGTCGGGAAAACAAGATTCGCCGTTGTGACTTTAATCTGCT-CACCACACCGCT
1 TTTAACTGCAATTTCGGGGAAACAAGATTCGCCGTTATGACTTTAATCTGTTCCACTACACCGCC
*
17550781 TGGGAAGTAAGAT
66 TGAGAAGTAAGAT
17550794 CTGTAATTCT
Statistics
Matches: 332, Mismatches: 40, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
99 23 0.07
100 307 0.92
101 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (100 bp):
TTTAACTGCAATTTCGGGGAAACAAGATTCGCCGTTATGACTTTAATCTGTTCCACTACACCGCC
TGAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTT
Found at i:17551242 original size:132 final size:132
Alignment explanation
Indices: 17550911--17551251 Score: 547
Period size: 132 Copynumber: 2.6 Consensus size: 132
17550901 ACCGTAATAT
* * * *
17550911 CAGGGAAATAGGATAACTGGCTTCAATGTACTCCGCTGTAACCACAGGGAGGTAAAATCCACCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCAT
* * *
17550976 ATTTGATCTGCTCCACTACTGCTTAGAGAGACAAGATCTGAAATCTTCAATTTATTCCACTACTA
66 CTTTGATCTGCTCCACTACTGCTTAGAGAGACAAGATCTGAAATCTTCAATCTATTCCACCACTA
17551041 CC
131 CC
*
17551043 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCCCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCAT
* * *
17551108 CTTTGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATCTTCAATCTATTCCACCGCTG
66 CTTTGATCTGCTCCACTACTGCTTAGAGAGACAAGATCTGAAATCTTCAATCTATTCCACCACTA
17551173 CC
131 CC
** *
17551175 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCTGCTAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCAT
*
17551240 CTTCGATCTGCT
66 CTTTGATCTGCT
17551252 TTGCCGTCAG
Statistics
Matches: 194, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 194 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (132 bp):
CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAATCCACCAT
CTTTGATCTGCTCCACTACTGCTTAGAGAGACAAGATCTGAAATCTTCAATCTATTCCACCACTA
CC
Found at i:17551355 original size:88 final size:88
Alignment explanation
Indices: 17551239--17551465 Score: 348
Period size: 88 Copynumber: 2.6 Consensus size: 88
17551229 AAATCTGCTA
* * *
17551239 TCTTCGATCTGCTTTGCCGTC-AGTACAGGAAGGCAAGATCTGCTATCTTCAACCTACTCCACTG
1 TCTTCGATCTGCTTCGCTGTCTA-TACAGGAAGGCAAGATCTGCTATCTTCAACCTACTCCACAG
* *
17551303 CAACTGAGGGAGGCAAGGCTGGTG
65 CAACCGAGGGAGGCAAGGCTGGGG
* * *
17551327 TCTTCGATCTGCTTCGCTGTCTACACAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCACAGC
1 TCTTCGATCTGCTTCGCTGTCTATACAGGAAGGCAAGATCTGCTATCTTCAACCTACTCCACAGC
17551392 AACCGAGGGAGGCAAGGCTGGGG
66 AACCGAGGGAGGCAAGGCTGGGG
* *
17551415 TCTTCGATCTGCTTCGCTGTCTATGCAGGAAGGCAAAATCTGCTATCTTCA
1 TCTTCGATCTGCTTCGCTGTCTATACAGGAAGGCAAGATCTGCTATCTTCA
17551466 CTGATCTATT
Statistics
Matches: 126, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
88 125 0.99
89 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.25, T:0.26
Consensus pattern (88 bp):
TCTTCGATCTGCTTCGCTGTCTATACAGGAAGGCAAGATCTGCTATCTTCAACCTACTCCACAGC
AACCGAGGGAGGCAAGGCTGGGG
Found at i:17551361 original size:44 final size:43
Alignment explanation
Indices: 17551313--17551450 Score: 116
Period size: 44 Copynumber: 3.1 Consensus size: 43
17551303 CAACTGAGGG
17551313 AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCTACACAGGA
1 AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCTAC-CAGGA
* * * * * * * * * * *
17551357 AGGCAAGATCTGCTATTTTCAACCTGCTCCACAG-CAACCGAGGG
1 AGGCAAG-GCTGGTGTCTTCGATCTGCTTCGCTGTCTACC-AGGA
* *
17551401 AGGCAAGGCTGGGGTCTTCGATCTGCTTCGCTGTCTATGCAGGA
1 AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCTA-CCAGGA
17551445 AGGCAA
1 AGGCAA
17551451 AATCTGCTAT
Statistics
Matches: 66, Mismatches: 24, Indels: 8
0.67 0.24 0.08
Matches are distributed among these distances:
43 17 0.26
44 31 0.47
45 18 0.27
ACGTcount: A:0.22, C:0.25, G:0.29, T:0.24
Consensus pattern (43 bp):
AGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCTACCAGGA
Found at i:17553682 original size:30 final size:30
Alignment explanation
Indices: 17553648--17553704 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
17553638 TATTTTTTCA
17553648 TTTTCATTTTTTG-TTTCAACTTTGATTGAT
1 TTTTC-TTTTTTGCTTTCAACTTTGATTGAT
**
17553678 TTTTCTTTTTTGCTTTTGACTTTGATT
1 TTTTCTTTTTTGCTTTCAACTTTGATT
17553705 TTTTTTGAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 7 0.29
30 17 0.71
ACGTcount: A:0.12, C:0.11, G:0.11, T:0.67
Consensus pattern (30 bp):
TTTTCTTTTTTGCTTTCAACTTTGATTGAT
Found at i:17554519 original size:25 final size:25
Alignment explanation
Indices: 17554469--17554534 Score: 71
Period size: 25 Copynumber: 2.6 Consensus size: 25
17554459 AAGAAAGTCC
* *
17554469 AAAAGAATGAAATAATAATTATTCA
1 AAAAGAATGAAAGAATAATTACTCA
*
17554494 AAAAGAATGAAAGAAT-ATTGGCTCA
1 AAAAGAATGAAAGAATAATT-ACTCA
17554519 AAAATGAATGCAAAGA
1 AAAA-GAATG-AAAGA
17554535 TGTATTTCAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
24 3 0.09
25 22 0.63
26 5 0.14
27 5 0.14
ACGTcount: A:0.58, C:0.06, G:0.15, T:0.21
Consensus pattern (25 bp):
AAAAGAATGAAAGAATAATTACTCA
Found at i:17558313 original size:18 final size:18
Alignment explanation
Indices: 17558286--17558326 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
17558276 ACGAATAATT
17558286 AATAAATACAAATAA-AC
1 AATAAATACAAATAAGAC
*
17558303 AATACAATACACATAAGAC
1 AATA-AATACAAATAAGAC
17558322 AATAA
1 AATAA
17558327 GCTCACATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 4 0.19
18 11 0.52
19 6 0.29
ACGTcount: A:0.66, C:0.15, G:0.02, T:0.17
Consensus pattern (18 bp):
AATAAATACAAATAAGAC
Found at i:17558505 original size:14 final size:14
Alignment explanation
Indices: 17558486--17558512 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
17558476 CATATATGTA
17558486 TAATAAAAATAGTT
1 TAATAAAAATAGTT
17558500 TAATAAAAATAGT
1 TAATAAAAATAGT
17558513 ATATCTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.33
Consensus pattern (14 bp):
TAATAAAAATAGTT
Found at i:17559676 original size:11 final size:11
Alignment explanation
Indices: 17559660--17559685 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
17559650 TTTACAGAGG
17559660 AAAAATAAAAT
1 AAAAATAAAAT
17559671 AAAAATAAAAT
1 AAAAATAAAAT
17559682 AAAA
1 AAAA
17559686 GGAAAATTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:17568754 original size:5 final size:5
Alignment explanation
Indices: 17568744--17568777 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
17568734 GTTGATAAAG
17568744 AAAAT AAAAT -AAAT AAATAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAA-AT AAAAT AAAAT AAAA
17568778 ACATAATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
4 4 0.15
5 18 0.67
6 5 0.19
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
AAAAT
Found at i:17570721 original size:20 final size:20
Alignment explanation
Indices: 17570678--17570736 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
17570668 TTGTACAGGT
*
17570678 TTGCACTTCGGTGCCTCTAA
1 TTGCACTTTGGTGCCTCTAA
* **
17570698 TTGCA-TATTTGTGCCTCTGT
1 TTGCACT-TTGGTGCCTCTAA
17570718 TTGCACTTTGGTGCCTCTA
1 TTGCACTTTGGTGCCTCTA
17570737 TTAAGTGTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
19 1 0.03
20 29 0.94
21 1 0.03
ACGTcount: A:0.12, C:0.25, G:0.20, T:0.42
Consensus pattern (20 bp):
TTGCACTTTGGTGCCTCTAA
Found at i:17574914 original size:3 final size:3
Alignment explanation
Indices: 17574906--17575111 Score: 412
Period size: 3 Copynumber: 68.7 Consensus size: 3
17574896 CTCTGTGGGA
17574906 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
17574954 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
17575002 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
17575050 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
17575098 TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TC
17575112 GAGGTCCAAA
Statistics
Matches: 203, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 203 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:17581293 original size:19 final size:19
Alignment explanation
Indices: 17581269--17581306 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
17581259 ATCAAAAGTT
17581269 TTATTTAATTTA-TATTTTA
1 TTATTT-ATTTACTATTTTA
17581288 TTATTTATTTACTATTTTA
1 TTATTTATTTACTATTTTA
17581307 CCCTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (19 bp):
TTATTTATTTACTATTTTA
Found at i:17583429 original size:15 final size:14
Alignment explanation
Indices: 17583402--17583459 Score: 68
Period size: 14 Copynumber: 4.3 Consensus size: 14
17583392 AAAAACATAA
*
17583402 TTTTCCTTGAATTT
1 TTTTCCATGAATTT
17583416 TTTTCTCATGAATTT
1 TTTTC-CATGAATTT
*
17583431 TTTTCCACGAATTT
1 TTTTCCATGAATTT
17583445 TTTT--A-GAATTT
1 TTTTCCATGAATTT
17583456 TTTT
1 TTTT
17583460 AGAATCTCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
11 10 0.24
12 1 0.02
14 17 0.41
15 13 0.32
ACGTcount: A:0.19, C:0.12, G:0.07, T:0.62
Consensus pattern (14 bp):
TTTTCCATGAATTT
Found at i:17583458 original size:10 final size:11
Alignment explanation
Indices: 17583425--17583464 Score: 53
Period size: 11 Copynumber: 3.4 Consensus size: 11
17583415 TTTTTCTCAT
17583425 GAATTTTTTTCCA
1 GAATTTTTTT--A
17583438 CGAATTTTTTTA
1 -GAATTTTTTTA
17583450 GAATTTTTTTA
1 GAATTTTTTTA
17583461 GAAT
1 GAAT
17583465 CTCAAATATT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
11 15 0.58
12 1 0.04
14 10 0.38
ACGTcount: A:0.28, C:0.07, G:0.10, T:0.55
Consensus pattern (11 bp):
GAATTTTTTTA
Found at i:17583535 original size:12 final size:12
Alignment explanation
Indices: 17583513--17583546 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
17583503 CTTTGAACAT
*
17583513 TTTTTTGAACTA
1 TTTTTTAAACTA
*
17583525 TTTTTTAAACTC
1 TTTTTTAAACTA
17583537 TTTTTTAAAC
1 TTTTTTAAAC
17583547 ACAAATTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.26, C:0.12, G:0.03, T:0.59
Consensus pattern (12 bp):
TTTTTTAAACTA
Found at i:17590723 original size:12 final size:12
Alignment explanation
Indices: 17590706--17590733 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
17590696 CTTATCAAGG
17590706 TAAATATTATAT
1 TAAATATTATAT
17590718 TAAATATTATAT
1 TAAATATTATAT
17590730 TAAA
1 TAAA
17590734 CAATATGGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (12 bp):
TAAATATTATAT
Found at i:17596724 original size:14 final size:14
Alignment explanation
Indices: 17596707--17596748 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
17596697 ATCGAAATTC
17596707 ACATTAATTTTTCA
1 ACATTAATTTTTCA
*
17596721 ACATTAATTTTCCA
1 ACATTAATTTTTCA
17596735 A-ATTAATTTTTCA
1 ACATTAATTTTTCA
17596748 A
1 A
17596749 GAAAATTCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 12 0.46
14 14 0.54
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.48
Consensus pattern (14 bp):
ACATTAATTTTTCA
Done.