Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 63 of 145
Found at i:20797793 original size:217 final size:217
Alignment explanation
Indices: 20797406--20798177 Score: 1202
Period size: 217 Copynumber: 3.5 Consensus size: 217
20797396 CAGTAGCTAG
* * * *
20797406 TAATCCTATCTCCCTGAAGTTGTAGTGGGGTAGATTAAAACCTTGGATCTTATCTCTCTGAAGTT
1 TAATCCTATCTTCCTGAAGTTGCAGTGGAGTAGATTAAAACCTTAGATCTTATCTCTCTGAAGTT
**
20797471 GCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAATTAA
66 GCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAAGCAA
*
20797536 GTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCTCTGAAGTTG
131 GTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTG
*
20797601 CAATGGAGCAGGTTAAAGCCGA
196 CAGTGGAGCAGGTTAAAGCCGA
* *
20797623 TAATTCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTT
1 TAATCCTATCTTCCTGAAGTTGCAGTGGAGTAGATTAAAACCTTAGATCTTATCTCTCTGAAGTT
* *
20797688 GCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAAAAAGCAA
66 GCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAAGCAA
20797753 GTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTG
131 GTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTG
* *
20797818 CAGTGGGGCAGGTTAAAGTCGA
196 CAGTGGAGCAGGTTAAAGCCGA
*
20797840 TAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAAAACCTTAGATCTTATCTCTCTGAAGTT
1 TAATCCTATCTTCCTGAAGTTGCAGTGGAGTAGATTAAAACCTTAGATCTTATCTCTCTGAAGTT
* *
20797905 GCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAGTAAGCAA
66 GCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAAGCAA
*
20797970 GTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAAGTTG
131 GTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTG
* * * *
20798035 TAGTGGAGCAGATTAAAACCAA
196 CAGTGGAGCAGGTTAAAGCCGA
* * * * *
20798057 TAATCCTATCTTCTTGAAGTTGCAATGGAGCAAATTAGAACCACAAATCTTGGATCTTATCTCTC
1 TAATCCTATCTTCCTGAAGTTGCAGTGGAGTAGATTA-AA--AC----CTTAGATCTTATCTCTC
** * *
20798122 TGAAGTCACAGAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGAGGAG
59 TGAAGTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAG
20798178 TAGATTGAAG
Statistics
Matches: 512, Mismatches: 36, Indels: 7
0.92 0.06 0.01
Matches are distributed among these distances:
217 440 0.86
218 2 0.00
220 2 0.00
224 68 0.13
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (217 bp):
TAATCCTATCTTCCTGAAGTTGCAGTGGAGTAGATTAAAACCTTAGATCTTATCTCTCTGAAGTT
GCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAAGCAA
GTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTG
CAGTGGAGCAGGTTAAAGCCGA
Found at i:20797931 original size:173 final size:173
Alignment explanation
Indices: 20797752--20798080 Score: 395
Period size: 173 Copynumber: 1.9 Consensus size: 173
20797742 TAAAAAAGCA
* *
20797752 AGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAG-ATGGCAAATCTTAT-CTCCCTGA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAAACT-AAGTA-AGCAAATCTTATCCT-CCTGA
* ** * * **
20797813 AGTTGCAGTGGGGCAGGTTAAAG-TCGA-TAATCCTATCTTCCTGAAGTTGCAGTGGAGTGGATT
61 AGTTGCAGTGAGGCAGACTAAAGAT-GACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATT
* *
20797876 AAAACC-TTAGATCTTATC-TCTCTGAAGTTGCAGAGAGCAGATCGCATCT
125 AAAACCAATA-ATCCTATCTTCT-TGAAGTTGCAGAGAGCAGATCGCATCT
*
20797925 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAGTAAGCAAGTCTTATCCTCCTGAAGTTG
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAGTAAGCAAATCTTATCCTCCTGAAGTTG
* * *
20797990 CAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAACC
66 CAGTGAGGCAGACTAAAGATGACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
20798055 AATAATCCTATCTTCTTGAAGTTGCA
131 AATAATCCTATCTTCTTGAAGTTGCA
20798081 ATGGAGCAAA
Statistics
Matches: 133, Mismatches: 15, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
172 39 0.29
173 86 0.65
174 8 0.06
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (173 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAGTAAGCAAATCTTATCCTCCTGAAGTTG
CAGTGAGGCAGACTAAAGATGACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
AATAATCCTATCTTCTTGAAGTTGCAGAGAGCAGATCGCATCT
Found at i:20798046 original size:45 final size:44
Alignment explanation
Indices: 20797493--20798046 Score: 280
Period size: 44 Copynumber: 12.7 Consensus size: 44
20797483 TCGCATCTAG
* ** *
20797493 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAATTAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
*
20797537 TCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAG-ATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGCAAA
* * * *
20797582 TCTTATCTCTCTGAAGTTGCAATGGAGCAG-GTTA--AAGCCGATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG-C-A-AA
* ** * * *
20797626 T-TCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAA--AACCTTAGA
1 TCT-TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC--AAA
* * * * * * *
20797670 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CG-CATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
* ** *
20797710 TCTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAAAAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
*
20797754 TCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAG-ATGGCAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTA-AGCAAA
* ** *
20797799 TCTTATCTCCCTGAAGTTGCAGTGGGGCAGGTTAAAGT-CG-ATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAGCA-AA
* * ** * * *
20797843 TCCTATCTTCCTGAAGTTGCAGTGGAGTGGATTAA--AACCTTAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGC--AAA
* * * * * * *
20797887 TCTTATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CG-CATCTAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
* *
20797927 TCTTATCTCCCTGAAGTTGCAGTGGAGCAAACTAAGTAAGCAAG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
*
20797971 TCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAG-ATGACAAA
1 TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGTAAG-CAAA
*
20798016 TCTTATCTCCCTGAAGTTGTAGTGGAGCAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
20798047 TTAAAACCAA
Statistics
Matches: 390, Mismatches: 79, Indels: 81
0.71 0.14 0.15
Matches are distributed among these distances:
40 41 0.11
41 14 0.04
42 10 0.03
43 26 0.07
44 190 0.49
45 101 0.26
46 8 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAA
Found at i:20810480 original size:84 final size:84
Alignment explanation
Indices: 20810357--20810519 Score: 229
Period size: 84 Copynumber: 1.9 Consensus size: 84
20810347 TGAGTGAAAA
* * * * * *
20810357 TTCCACATAAGACAGTCATTGGTGGACATTCCATCTAAGATATTCATTGGTGGATTTTCCACATA
1 TTCCACATAAGACAGTCATTGGCGGACATTCCATCTAAGATAGTCATTGGCGAACTTTCCACAAA
20810422 AGATAGTCCTTGGAGGAAT
66 AGATAGTCCTTGGAGGAAT
* * *
20810441 TTCCACATAAGATAGTCTTTGGCGGACTTTCCA-CATAAGATAGTCATTGGCGAACTTTCCACAA
1 TTCCACATAAGACAGTCATTGGCGGACATTCCATC-TAAGATAGTCATTGGCGAACTTTCCACAA
20810505 AAGATAGTCCTTGGA
65 AAGATAGTCCTTGGA
20810520 AGACTTCCAT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
83 1 0.01
84 68 0.99
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.31
Consensus pattern (84 bp):
TTCCACATAAGACAGTCATTGGCGGACATTCCATCTAAGATAGTCATTGGCGAACTTTCCACAAA
AGATAGTCCTTGGAGGAAT
Found at i:20810525 original size:28 final size:28
Alignment explanation
Indices: 20810357--20810525 Score: 178
Period size: 28 Copynumber: 6.0 Consensus size: 28
20810347 TGAGTGAAAA
* * * *
20810357 TTCCACATAAGACAGTCATTGGTGGACA
1 TTCCACATAAGATAGTCCTTGGAGGACT
* * * *
20810385 TTCCATC-TAAGATATTCATTGGTGGATT
1 TTCCA-CATAAGATAGTCCTTGGAGGACT
*
20810413 TTCCACATAAGATAGTCCTTGGAGGAAT
1 TTCCACATAAGATAGTCCTTGGAGGACT
* *
20810441 TTCCACATAAGATAGTCTTTGGCGGACT
1 TTCCACATAAGATAGTCCTTGGAGGACT
* * *
20810469 TTCCACATAAGATAGTCATTGGCGAACT
1 TTCCACATAAGATAGTCCTTGGAGGACT
* *
20810497 TTCCACAAAAGATAGTCCTTGGAAGACT
1 TTCCACATAAGATAGTCCTTGGAGGACT
20810525 T
1 T
20810526 CCATTTTCTA
Statistics
Matches: 121, Mismatches: 18, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
27 1 0.01
28 119 0.98
29 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.31
Consensus pattern (28 bp):
TTCCACATAAGATAGTCCTTGGAGGACT
Found at i:20813408 original size:23 final size:23
Alignment explanation
Indices: 20813358--20813402 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
20813348 GTAATGATTA
* *
20813358 GATTAAAATGGAATTTTTAATAT
1 GATTAAAATGAAATTTTAAATAT
*
20813381 GATTAAAATTAAATTTTAAATA
1 GATTAAAATGAAATTTTAAATA
20813403 GAATTATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.42
Consensus pattern (23 bp):
GATTAAAATGAAATTTTAAATAT
Found at i:20813567 original size:13 final size:13
Alignment explanation
Indices: 20813551--20813575 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
20813541 ATTTGAGTTT
20813551 ATAATTCATATTA
1 ATAATTCATATTA
20813564 ATAATTCATATT
1 ATAATTCATATT
20813576 CGGGTTTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (13 bp):
ATAATTCATATTA
Found at i:20813700 original size:149 final size:152
Alignment explanation
Indices: 20813531--20813832 Score: 556
Period size: 149 Copynumber: 2.0 Consensus size: 152
20813521 ATAATTCTAG
20813531 TTTTTTTTTAATTTGAGTTTATAATTCATATTAATAATTCATATTCGGGTTTGTTTGGTTTAAAA
1 TTTTTTTTTAATTTGAGTTTATAATTCATATTAATAATTCATATTCGGGTTTGTTTGGTTTAAAA
20813596 AACAAATATCATTTTTATTTTCATTTTCTTGAAAAATGAAAAACACTAAGC-A-A-GTTGGTTAA
66 AACAAATATCATTTTTATTTTCATTTTCTTGAAAAATGAAAAACACTAAGCAATATGTTGGTTAA
20813658 AAATTATAAAATGATTTTGAAT
131 AAATTATAAAATGATTTTGAAT
*
20813680 TTTTTTTTTAATTTGAGTTTATATTTCATATTAATAATTCATATTCGGGTTTGTTTGGTTTAAAA
1 TTTTTTTTTAATTTGAGTTTATAATTCATATTAATAATTCATATTCGGGTTTGTTTGGTTTAAAA
20813745 AACAAATATCATTTTTATTTTCATTTTCTTGAAAAATGAAAAACACTAAGCAAAATATGTTGGTT
66 AACAAATATCATTTTTATTTTCATTTTCTTGAAAAATGAAAAACACTAAGC--AATATGTTGGTT
20813810 AAAAATTATAAAATGATTTTGAA
129 AAAAATTATAAAATGATTTTGAA
20813833 AAATGAAAAT
Statistics
Matches: 147, Mismatches: 1, Indels: 5
0.96 0.01 0.03
Matches are distributed among these distances:
149 115 0.78
152 1 0.01
153 1 0.01
154 30 0.20
ACGTcount: A:0.37, C:0.07, G:0.11, T:0.46
Consensus pattern (152 bp):
TTTTTTTTTAATTTGAGTTTATAATTCATATTAATAATTCATATTCGGGTTTGTTTGGTTTAAAA
AACAAATATCATTTTTATTTTCATTTTCTTGAAAAATGAAAAACACTAAGCAATATGTTGGTTAA
AAATTATAAAATGATTTTGAAT
Found at i:20813898 original size:51 final size:51
Alignment explanation
Indices: 20813838--20813940 Score: 197
Period size: 51 Copynumber: 2.0 Consensus size: 51
20813828 TTGAAAAATG
*
20813838 AAAATATTTAAAATTTAAAAATATAAAATAAAAGTTGTTTTCATTGTTTTC
1 AAAACATTTAAAATTTAAAAATATAAAATAAAAGTTGTTTTCATTGTTTTC
20813889 AAAACATTTAAAATTTAAAAATATAAAATAAAAGTTGTTTTCATTGTTTTC
1 AAAACATTTAAAATTTAAAAATATAAAATAAAAGTTGTTTTCATTGTTTTC
20813940 A
1 A
20813941 CTAAAAATGT
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.48, C:0.05, G:0.06, T:0.42
Consensus pattern (51 bp):
AAAACATTTAAAATTTAAAAATATAAAATAAAAGTTGTTTTCATTGTTTTC
Found at i:20827887 original size:28 final size:29
Alignment explanation
Indices: 20827824--20827890 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
20827814 TTTAATTCAT
*
20827824 AAATTGGTACTTAAATTATATTTTTTCTC
1 AAATTGGTACTAAAATTATATTTTTTCTC
** *
20827853 ATCTTGGTACTAAAACTT-TTTTTTTTC-C
1 AAATTGGTACTAAAA-TTATATTTTTTCTC
20827881 AAATTGGTAC
1 AAATTGGTAC
20827891 CTCCATTAGT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
28 9 0.29
29 20 0.65
30 2 0.06
ACGTcount: A:0.28, C:0.13, G:0.09, T:0.49
Consensus pattern (29 bp):
AAATTGGTACTAAAATTATATTTTTTCTC
Found at i:20828050 original size:12 final size:12
Alignment explanation
Indices: 20828033--20828062 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
20828023 ATTGGTAGTT
*
20828033 TTGTTAGTTCAA
1 TTGTTAGTTAAA
20828045 TTGTTAGTTAAA
1 TTGTTAGTTAAA
20828057 TTGTTA
1 TTGTTA
20828063 AGTATATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.27, C:0.03, G:0.17, T:0.53
Consensus pattern (12 bp):
TTGTTAGTTAAA
Found at i:20832309 original size:58 final size:58
Alignment explanation
Indices: 20832241--20832417 Score: 133
Period size: 54 Copynumber: 3.2 Consensus size: 58
20832231 TTCATATATA
20832241 TACACGTATATTTATTTTTATCTTGTAATTATTTAATTTTTTTTTACATATTTTTATG
1 TACACGTATATTTATTTTTATCTTGTAATTATTTAATTTTTTTTTACATATTTTTATG
* * * * * * *** **
20832299 TACAC-T-TA--TATATTTAGT-TTTTAAGTA--AACATTCTTTTATATCA-A--CAAAAA
1 TACACGTATATTTATTTTTA-TCTTGTAATTATTTA-ATTTTTTTTTA-CATATTTTTATG
*
20832350 T-CACGTATATTTATTTTTATCTTGTAATTATTTAATATTTTTTTACATATTTTTATG
1 TACACGTATATTTATTTTTATCTTGTAATTATTTAATTTTTTTTTACATATTTTTATG
*
20832407 TACACTTATAT
1 TACACGTATAT
20832418 ATTTAGTTTT
Statistics
Matches: 81, Mismatches: 24, Indels: 28
0.61 0.18 0.21
Matches are distributed among these distances:
50 3 0.04
51 3 0.04
52 3 0.04
53 11 0.14
54 32 0.40
55 10 0.12
56 3 0.04
57 3 0.04
58 13 0.16
ACGTcount: A:0.31, C:0.09, G:0.05, T:0.55
Consensus pattern (58 bp):
TACACGTATATTTATTTTTATCTTGTAATTATTTAATTTTTTTTTACATATTTTTATG
Found at i:20832366 original size:108 final size:108
Alignment explanation
Indices: 20832243--20832455 Score: 408
Period size: 108 Copynumber: 2.0 Consensus size: 108
20832233 CATATATATA
*
20832243 CACGTATATTTATTTTTATCTTGTAATTATTTAATTTTTTTTTACATATTTTTATGTACACTTAT
1 CACGTATATTTATTTTTATCTTGTAATTATTTAATATTTTTTTACATATTTTTATGTACACTTAT
20832308 ATATTTAGTTTTTAAGTAAACATTCTTTTATATCAACAAAAAT
66 ATATTTAGTTTTTAAGTAAACATTCTTTTATATCAACAAAAAT
20832351 CACGTATATTTATTTTTATCTTGTAATTATTTAATATTTTTTTACATATTTTTATGTACACTTAT
1 CACGTATATTTATTTTTATCTTGTAATTATTTAATATTTTTTTACATATTTTTATGTACACTTAT
*
20832416 ATATTTAGTTTTTAAGTAAATATTCTTTTATATCAACAAA
66 ATATTTAGTTTTTAAGTAAACATTCTTTTATATCAACAAA
20832456 TACGTATATA
Statistics
Matches: 103, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
108 103 1.00
ACGTcount: A:0.32, C:0.09, G:0.05, T:0.54
Consensus pattern (108 bp):
CACGTATATTTATTTTTATCTTGTAATTATTTAATATTTTTTTACATATTTTTATGTACACTTAT
ATATTTAGTTTTTAAGTAAACATTCTTTTATATCAACAAAAAT
Found at i:20844608 original size:44 final size:43
Alignment explanation
Indices: 20844553--20845227 Score: 327
Period size: 44 Copynumber: 15.6 Consensus size: 43
20844543 CCGATAATCC
* * *
20844553 TATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAACCTTGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATC-TAGATCT
* * * ***
20844597 TATCTCTCTGAAGATGCAG-AGAGCAGA-TCGCATCTAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCTAGATCT
* * * *
20844637 TATCT-CCTTAGAGTTGTAGTGGAGCAGACTAAGTAAGCTAG-TCT
1 TATCTCCCTGA-AGTTGCAGTGGAGCAGATTAA--AATCTAGATCT
* * * * *
20844681 TATC-CTCCTGAAGCTGCAGT-GAGGTAGACTGAAGATGGC-AAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAAAAT--CTAGATCT
* * *
20844726 TATCTCCCTGAAGTTGAAGTGGAGCAGATT-AAAGCTGATAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCT-A-GATCT
* * * *
20844770 TATCTCCCTGAAGTTGCAATGGAGCGGATTAAAACCTTGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATC-TAGATCT
* * * ***
20844814 TATCTCTCTGAAGATGCAG-AGAGCAGA-TCGCATCTAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCTAGATCT
* * * *
20844854 TATCTCCCTGGAGTTGCAGTGGAGCAGACTAAGTAAGCAAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AATCTAGATCT
* * * * *
20844898 TATC-CTTCTGAAGTTGTAGT-GAGGCAGACTGAAGATGAC-AAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAAAAT--CTAGATCT
* ** *
20844943 TATCTCCCTGAGGTTGCAGTGGAGCAGATTAAAGCCGATA-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATC--TAGATCT
* * *
20844987 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATCTTGGATAT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATC-TAGATCT
* * * ***
20845031 TATCTCTCTGAATTTGCAG-AGAGCAGA-TCGCATCTAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCTAGATCT
* * *
20845071 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACAAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAA--AATCTAGATCT
* ** * * *
20845115 TATC-CTCCTGAAGTTACAGT-GAGGCAGACTGGAGATGGTAAATCT
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAAAAT-CTAGATCT
* * *
20845160 TATCTCCCTAAAGTTGCAGTGGAGCAGATT-AAAGCTGATAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCT-A-GATCT
20845204 TATCTCCCTGAAGTTGCAGTGGAG
1 TATCTCCCTGAAGTTGCAGTGGAG
20845228 TAGACCCAAG
Statistics
Matches: 468, Mismatches: 115, Indels: 96
0.69 0.17 0.14
Matches are distributed among these distances:
39 3 0.01
40 52 0.11
41 28 0.06
42 15 0.03
43 37 0.08
44 237 0.51
45 86 0.18
46 10 0.02
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCTAGATCT
Found at i:20844921 original size:217 final size:217
Alignment explanation
Indices: 20844545--20845227 Score: 1114
Period size: 217 Copynumber: 3.1 Consensus size: 217
20844535 ATCGGTGGCC
*
20844545 GATAATCCTATCTCCCTGAAGTTGCAGTGAAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAG
1 GATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAG
* * *
20844610 ATGCAGAGAGCAGATCGCATCTAGTCTTATCTCCTTAGAGTTGTAGTGGAGCAGACTAAGTAAGC
66 ATGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGGAGTTGCAGTGGAGCAGACTAAGTAAGC
* * *
20844675 TAGTCTTATCCTCCTGAAGCTGCAGTGAGGTAGACTGAAGATGGCAAATCTTATCTCCCTGAAGT
131 AAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGT
*
20844740 TGAAGTGGAGCAGATTAAAGCT
196 TGCAGTGGAGCAGATTAAAGCT
* * *
20844762 GATAATCTTATCTCCCTGAAGTTGCAATGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAG
1 GATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAG
20844827 ATGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGGAGTTGCAGTGGAGCAGACTAAGTAAGC
66 ATGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGGAGTTGCAGTGGAGCAGACTAAGTAAGC
* * * *
20844892 AAGTCTTATCCTTCTGAAGTTGTAGTGAGGCAGACTGAAGATGACAAATCTTATCTCCCTGAGGT
131 AAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGT
*
20844957 TGCAGTGGAGCAGATTAAAGCC
196 TGCAGTGGAGCAGATTAAAGCT
* * * *
20844979 GATAATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATCTTGGATATTATCTCTCTGAAT
1 GATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAG
* * *
20845044 TTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAAC
66 ATGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGGAGTTGCAGTGGAGCAGACTAAGTAAGC
* * * *
20845109 AAGTCTTATCCTCCTGAAGTTACAGTGAGGCAGACTGGAGATGGTAAATCTTATCTCCCTAAAGT
131 AAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGT
20845174 TGCAGTGGAGCAGATTAAAGCT
196 TGCAGTGGAGCAGATTAAAGCT
*
20845196 GATAATCTTATCTCCCTGAAGTTGCAGTGGAG
1 GATAATCCTATCTCCCTGAAGTTGCAGTGGAG
20845228 TAGACCCAAG
Statistics
Matches: 429, Mismatches: 37, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
217 429 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.28
Consensus pattern (217 bp):
GATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAG
ATGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGGAGTTGCAGTGGAGCAGACTAAGTAAGC
AAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGT
TGCAGTGGAGCAGATTAAAGCT
Found at i:20845118 original size:84 final size:89
Alignment explanation
Indices: 20844982--20845192 Score: 195
Period size: 84 Copynumber: 2.4 Consensus size: 89
20844972 TAAAGCCGAT
* * * * ** *
20844982 AATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATCTTGGATATTAT-CTCTCTGAATTT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAACTAAGATATTATCCTC-CTGAAGTT
*
20845046 GCAGAGA-GCAGA-TCG-CAT-CT-
65 ACAGAGAGGCAGACTCGACATGCTA
* *
20845066 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAAC-AAG-TCTTATCCTCCTGAAGT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA--AAACTAAGATATTATCCTCCTGAAGT
* * * *
20845129 TACAGTGAGGCAGACTGGAGATGGTA
64 TACAGAGAGGCAGACTCGACATGCTA
* *
20845155 AATCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAA
20845193 GCTGATAATC
Statistics
Matches: 102, Mismatches: 17, Indels: 13
0.77 0.13 0.10
Matches are distributed among these distances:
84 50 0.49
85 9 0.09
86 5 0.05
87 3 0.03
88 1 0.01
89 34 0.33
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (89 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAAACTAAGATATTATCCTCCTGAAGTTA
CAGAGAGGCAGACTCGACATGCTA
Found at i:20846791 original size:16 final size:16
Alignment explanation
Indices: 20846770--20846800 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
20846760 ATATATGTTG
20846770 TTTTTATATACATATT
1 TTTTTATATACATATT
*
20846786 TTTTTATATTCATAT
1 TTTTTATATACATAT
20846801 ATATACACGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.06, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTTTATATACATATT
Found at i:20850663 original size:129 final size:129
Alignment explanation
Indices: 20850514--20850819 Score: 479
Period size: 129 Copynumber: 2.4 Consensus size: 129
20850504 TTTTAGTCTA
*
20850514 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTTAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
* *
20850579 AGATATGTGGTTTTAATCCGCTCCACTGCAACTTCAGGTAGATAGGATTGATTTC-TTCTGTCCG
66 AGATATGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTTC-GTCCG
* * * *
20850643 CTCCACTGCAACTTCGGGGAGATAAGACTGGATGCGATCTGTTTTACTGTAACTTCAGAGAGATA
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
* * * * *
20850708 AGATCTGTGATTTTAATCCGCTCCACTGTAACTTTAGGGAGATAGGATTGGTTTCTTTCGTCTG
66 AGATATGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTTCGTCCG
*
20850772 CTTCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACT
1 CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACT
20850820 ACTGCTTAGA
Statistics
Matches: 160, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
129 157 0.98
130 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (129 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATA
AGATATGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGATTTCTTTCGTCCG
Found at i:20850751 original size:44 final size:43
Alignment explanation
Indices: 20850514--20850801 Score: 176
Period size: 44 Copynumber: 6.7 Consensus size: 43
20850504 TTTTAGTCTA
*** *
20850514 CTCCACTGCAACTTCAGGGAGATAAGACTG-GA-TGCGATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTGTGATTTTAATCCG
* * * * *
20850555 CTCTACTGCAACTTTAGAGAGATAAGATATGTGGTTTTAATCCG
1 CTCCACTGCAACTTCAGGGAGATAAGA-CTGTGATTTTAATCCG
* * **
20850599 CTCCACTGCAACTTCAGGTAGATAGGA-T-TGATTTCTTCTGTCCG
1 CTCCACTGCAACTTCAGGGAGATAAGACTGTGA-TT-TT-AATCCG
* *** *
20850643 CTCCACTGCAACTTCGGGGAGATAAGACTG-GA-TGCGATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTGTGATTTTAATCCG
* ** * *
20850684 TTTTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCG
1 CTCCACTGCAACTTCAGGGAGATAAGA-CTGTGATTTTAATCCG
* * * * * ** *
20850728 CTCCACTGTAACTTTAGGGAGATAGGATTG-GTTTCTTTCGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTGTG-AT-TTTAATCCG
*
20850772 CTTCACTGCAACTTCAGGGAGATAAGACTG
1 CTCCACTGCAACTTCAGGGAGATAAGACTG
20850802 GATGCGATCT
Statistics
Matches: 183, Mismatches: 51, Indels: 23
0.71 0.20 0.09
Matches are distributed among these distances:
41 50 0.27
42 9 0.05
43 9 0.05
44 112 0.61
45 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.31
Consensus pattern (43 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTGTGATTTTAATCCG
Found at i:20850969 original size:131 final size:131
Alignment explanation
Indices: 20850808--20851146 Score: 545
Period size: 131 Copynumber: 2.6 Consensus size: 131
20850798 ACTGGATGCG
* * ** **
20850808 ATCTGCTCTACTACTGCTTAGAAAGATAAGATCTACAATCTTCAACCTACTCCACTGTTGCTCAG
1 ATCTGCTCCACTACAGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAG
*
20850873 GGAGATAGGACTGGTGGCTTAAATCTGCTTCCTACTATCTCGGGAAGATAAGATTCGCCGTCTTC
66 GGAGATAGGACTGGTGGCTTAAATCTGCTTCCTACTATCTCGGGAAGATAAGATTCACCGTCTTC
*
20850938 G
131 A
*
20850939 ATCTGCTCCACTTCCA-CTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTCA
1 ATCTGCTCCAC-TACAGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTCA
* *
20851003 GGGAGATAGGACTGGTGGCTTAAATCTGCTTCCTATTATCTCGGGAAGATAAGATTCACTGTCTT
65 GGGAGATAGGACTGGTGGCTTAAATCTGCTTCCTACTATCTCGGGAAGATAAGATTCACCGTCTT
*
20851068 TA
130 CA
*
20851070 ATCTGCTCCACTACAGTTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAG
1 ATCTGCTCCACTACAGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAG
20851135 GGAGATAGGACT
66 GGAGATAGGACT
20851147 TGTTATGATG
Statistics
Matches: 192, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
130 3 0.02
131 187 0.97
132 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (131 bp):
ATCTGCTCCACTACAGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAG
GGAGATAGGACTGGTGGCTTAAATCTGCTTCCTACTATCTCGGGAAGATAAGATTCACCGTCTTC
A
Found at i:20851006 original size:44 final size:44
Alignment explanation
Indices: 20850958--20851141 Score: 135
Period size: 44 Copynumber: 4.2 Consensus size: 44
20850948 ACTTCCACTT
20850958 AGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTC
1 AGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTC
* ***** * * * *
20851002 AGGGAGATAGGA-CTGGTGGCTTAAATCTGCTTCCTATTA-T-CTC
1 AGGGAGATAAGATCTACAATCTTCAACCTAC-TCC-ACTACTGCTC
** * * * * * *
20851045 -GGGAAGATAAGAT-TCACTGTCTTTAATCTGCTCCACTACAGTTT
1 AGGG-AGATAAGATCT-ACAATCTTCAACCTACTCCACTACTGCTC
20851089 AGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTC
1 AGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTC
20851133 AGGGAGATA
1 AGGGAGATA
20851142 GGACTTGTTA
Statistics
Matches: 104, Mismatches: 27, Indels: 18
0.70 0.18 0.12
Matches are distributed among these distances:
42 6 0.06
43 24 0.23
44 67 0.64
45 7 0.07
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.28
Consensus pattern (44 bp):
AGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTC
Found at i:20852173 original size:15 final size:16
Alignment explanation
Indices: 20852153--20852189 Score: 60
Period size: 15 Copynumber: 2.4 Consensus size: 16
20852143 GGTCAAAATC
20852153 AACGCTTC-TCTAGAA
1 AACGCTTCATCTAGAA
20852168 AACGC-TCATCTAGAA
1 AACGCTTCATCTAGAA
20852183 AACGCTT
1 AACGCTT
20852190 TCTTTACCAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 2 0.10
15 17 0.85
16 1 0.05
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.24
Consensus pattern (16 bp):
AACGCTTCATCTAGAA
Found at i:20861277 original size:16 final size:16
Alignment explanation
Indices: 20861245--20861278 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
20861235 TTTATAATGT
* *
20861245 AATGCCATGTAGTCAA
1 AATGCCATGCAGCCAA
20861261 AATGCCATGCAGCCAA
1 AATGCCATGCAGCCAA
20861277 AA
1 AA
20861279 CAAAACACCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.18
Consensus pattern (16 bp):
AATGCCATGCAGCCAA
Found at i:20862724 original size:3 final size:3
Alignment explanation
Indices: 20862716--20862745 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
20862706 TAAATGAGTA
20862716 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
20862746 TATTATTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:20864724 original size:19 final size:19
Alignment explanation
Indices: 20864682--20864724 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
20864672 AAAATTACAA
* *
20864682 AAAAATTCAAAATAATTTT
1 AAAAATTAAAAATAATTAT
*
20864701 TAAAATTAAAAATAATTAT
1 AAAAATTAAAAATAATTAT
20864720 AAAAA
1 AAAAA
20864725 AAATTATTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAATTAAAAATAATTAT
Found at i:20864733 original size:3 final size:3
Alignment explanation
Indices: 20864727--20864756 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
20864717 TATAAAAAAA
20864727 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
20864757 TTGCTTCGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:20869066 original size:11 final size:12
Alignment explanation
Indices: 20869016--20869069 Score: 69
Period size: 11 Copynumber: 4.8 Consensus size: 12
20869006 ACAAATCCTG
20869016 TCTCAAATTTCC
1 TCTCAAATTTCC
*
20869028 TTTC-AATTTCC
1 TCTCAAATTTCC
20869039 TCTC-AATTTCC
1 TCTCAAATTTCC
*
20869050 TTTCAAATTT-C
1 TCTCAAATTTCC
20869061 TCTCAAATT
1 TCTCAAATT
20869070 CATATTTAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
11 29 0.78
12 8 0.22
ACGTcount: A:0.24, C:0.28, G:0.00, T:0.48
Consensus pattern (12 bp):
TCTCAAATTTCC
Found at i:20869069 original size:23 final size:23
Alignment explanation
Indices: 20869016--20869069 Score: 85
Period size: 22 Copynumber: 2.4 Consensus size: 23
20869006 ACAAATCCTG
20869016 TCTCAAATTTCCTTTCAATTTCC
1 TCTCAAATTTCCTTTCAATTTCC
20869039 TCTC-AATTTCCTTTCAAATTT-C
1 TCTCAAATTTCCTTTC-AATTTCC
20869061 TCTCAAATT
1 TCTCAAATT
20869070 CATATTTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
22 16 0.55
23 13 0.45
ACGTcount: A:0.24, C:0.28, G:0.00, T:0.48
Consensus pattern (23 bp):
TCTCAAATTTCCTTTCAATTTCC
Found at i:20869407 original size:23 final size:23
Alignment explanation
Indices: 20869378--20869432 Score: 69
Period size: 22 Copynumber: 2.4 Consensus size: 23
20869368 AACAAATCCT
*
20869378 CTCTCAAATTTCC-TCTCAACTTC
1 CTCTCAAATTTCCTTC-CAAATTC
*
20869401 CTCTC-AATTTCCTTCCAAATTT
1 CTCTCAAATTTCCTTCCAAATTC
20869423 CTCTCAAATT
1 CTCTCAAATT
20869433 CATATTTAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 17 0.61
23 11 0.39
ACGTcount: A:0.24, C:0.35, G:0.00, T:0.42
Consensus pattern (23 bp):
CTCTCAAATTTCCTTCCAAATTC
Found at i:20869430 original size:11 final size:11
Alignment explanation
Indices: 20869377--20869432 Score: 53
Period size: 12 Copynumber: 5.0 Consensus size: 11
20869367 AAACAAATCC
20869377 TCTCTCAAATT
1 TCTCTCAAATT
*
20869388 TCCTCTCAACTT
1 T-CTCTCAAATT
*
20869400 CCTCTC-AATT
1 TCTCTCAAATT
20869410 TC-CTTCCAAATT
1 TCTC-T-CAAATT
20869422 TCTCTCAAATT
1 TCTCTCAAATT
20869433 CATATTTAAT
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
9 1 0.03
10 5 0.14
11 13 0.36
12 16 0.44
13 1 0.03
ACGTcount: A:0.23, C:0.34, G:0.00, T:0.43
Consensus pattern (11 bp):
TCTCTCAAATT
Found at i:20869499 original size:363 final size:366
Alignment explanation
Indices: 20868789--20869520 Score: 1209
Period size: 363 Copynumber: 2.0 Consensus size: 366
20868779 GTCAGCGCGC
* * *
20868789 TTTGATGATGTGGCAACAAAGTGCGGCCTTGAGAGTGCGATTTGTTGCCACGTCAGCAAAGCACT
1 TTTGATGATGTGGCAACAAAGCGCGGCCTTGAGAGCGCAATTTGTTGCCACGTCAGCAAAGCACT
* *
20868854 CTGACGTGGCCGTGATTTGATGACGCGGCGCGTCCCTGGGGACACGATTTAGACCACACGTGAAT
66 CTGACGTGGCCGCGATTTGATGACGCGGCGCGTCCCTGGGGACACGATTTAGACCACACGTGAAC
*
20868919 AGTACAACGGTCAAAAATTTGACCGTTGCCCCCCCAACGGTAAAAAAAAAAATCCTATAAATACC
131 AGTACAACGGTCAAAAATTTGACCGTTGCCCCCCCAACAGTAAAAAAAAAAATCCTATAAATACC
* * * *
20868984 CCCACCCCTTTTTTTTTCACAAACAAATCCTGTCTCAAATTTCCTTTCAATTTCCTCTCAATTTC
196 CCCACCCCTTTTTTTTCCACAAACAAATCCTCTCTCAAATTTCCTCTCAACTTCCTCTCAATTTC
* *
20869049 CTTTCAAATTTCTCTCAAATTCATATTTAATCTCAATTAGCTCTCAATATCCTTTTAAATTTCTC
261 CTTCCAAATTTCTCTCAAATTCATATTTAATCTCAATTAGCTCTCAATATACTTTTAAATTTCTC
20869114 TTAAATCCCTATTTTCAAATAATTTTAAAAAATTTTGATTT
326 TTAAATCCCTATTTTCAAATAATTTTAAAAAATTTTGATTT
* * * *
20869155 TTTGATGATGTGGCAACAAAGCGCTGCCTTGAGAGCGCAATTTGTTGCCATGTTAGCAAAGCGCT
1 TTTGATGATGTGGCAACAAAGCGCGGCCTTGAGAGCGCAATTTGTTGCCACGTCAGCAAAGCACT
* * * * *
20869220 CTGACGTGGCCGCGATTTGATGACGTGGTGCGTCCCTGGGGACTCGATTTAGACCTCGCGTGAAC
66 CTGACGTGGCCGCGATTTGATGACGCGGCGCGTCCCTGGGGACACGATTTAGACCACACGTGAAC
* * *
20869285 AGTGCAATGGTCAAAAATTTGACCGTTGCTCCCCCAACAGT-AAAAAAAAAA-CCTATAAATACC
131 AGTACAACGGTCAAAAATTTGACCGTTGCCCCCCCAACAGTAAAAAAAAAAATCCTATAAATACC
20869348 CCCA-CCCTTTTTTTTCCACAAACAAATCCTCTCTCAAATTTCCTCTCAACTTCCTCTCAATTTC
196 CCCACCCCTTTTTTTTCCACAAACAAATCCTCTCTCAAATTTCCTCTCAACTTCCTCTCAATTTC
*
20869412 CTTCCAAATTTCTCTCAAATTCATATTTAATCTCAATTAGCTCTCAATTTACTTTTAAATTTCTC
261 CTTCCAAATTTCTCTCAAATTCATATTTAATCTCAATTAGCTCTCAATATACTTTTAAATTTCTC
*
20869477 TTAAATCCCTATTTTTAAATAATTTTAAAAAATTTTGATTT
326 TTAAATCCCTATTTTCAAATAATTTTAAAAAATTTTGATTT
20869518 TTT
1 TTT
20869521 TAAATCGAAA
Statistics
Matches: 340, Mismatches: 26, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
363 161 0.47
364 16 0.05
365 10 0.03
366 153 0.45
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (366 bp):
TTTGATGATGTGGCAACAAAGCGCGGCCTTGAGAGCGCAATTTGTTGCCACGTCAGCAAAGCACT
CTGACGTGGCCGCGATTTGATGACGCGGCGCGTCCCTGGGGACACGATTTAGACCACACGTGAAC
AGTACAACGGTCAAAAATTTGACCGTTGCCCCCCCAACAGTAAAAAAAAAAATCCTATAAATACC
CCCACCCCTTTTTTTTCCACAAACAAATCCTCTCTCAAATTTCCTCTCAACTTCCTCTCAATTTC
CTTCCAAATTTCTCTCAAATTCATATTTAATCTCAATTAGCTCTCAATATACTTTTAAATTTCTC
TTAAATCCCTATTTTCAAATAATTTTAAAAAATTTTGATTT
Found at i:20871345 original size:18 final size:18
Alignment explanation
Indices: 20871318--20871355 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
20871308 CAGGTGCGTT
* *
20871318 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
20871336 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
20871354 TC
1 TC
20871356 TTTTTCCCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.29, G:0.08, T:0.42
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:20871958 original size:21 final size:21
Alignment explanation
Indices: 20871929--20872078 Score: 84
Period size: 22 Copynumber: 7.0 Consensus size: 21
20871919 ACCCTAATCC
*
20871929 TAACCCTTAACTTAAAAACCT
1 TAACCCTTAACTTAAAAACCG
* * * **
20871950 TAACACTTAAATCAAAAAGGG
1 TAACCCTTAACTTAAAAACCG
*
20871971 TAACCCTTAACTTAAAAACCCC
1 TAACCCTTAACTTAAAAA-CCG
* * * *
20871993 AAACCCTAAACCTAAAAACCA
1 TAACCCTTAACTTAAAAACCG
* * * *
20872014 TAAACTCTAAACATAAAAACCCC
1 T-AACCCTTAACTTAAAAA-CCG
* * * *
20872037 AAACCCTAAACATAAAAACCA
1 TAACCCTTAACTTAAAAACCG
*
20872058 TAAACCCTAAACTTAAAAACC
1 T-AACCCTTAACTTAAAAACC
20872079 CCAAACCCCA
Statistics
Matches: 100, Mismatches: 25, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
21 34 0.34
22 64 0.64
23 2 0.02
ACGTcount: A:0.51, C:0.29, G:0.02, T:0.18
Consensus pattern (21 bp):
TAACCCTTAACTTAAAAACCG
Found at i:20871997 original size:22 final size:22
Alignment explanation
Indices: 20871972--20872257 Score: 187
Period size: 22 Copynumber: 12.4 Consensus size: 22
20871962 CAAAAAGGGT
* *
20871972 AACCCTTAACTTAAAAACCCCA
1 AACCCTAAACATAAAAACCCCA
* **
20871994 AACCCTAAACCTAAAAACCATA
1 AACCCTAAACATAAAAACCCCA
*
20872016 AACTCTAAACATAAAAACCCCA
1 AACCCTAAACATAAAAACCCCA
**
20872038 AACCCTAAACATAAAAACCATA
1 AACCCTAAACATAAAAACCCCA
*
20872060 AACCCTAAACTTAAAAACCCCA
1 AACCCTAAACATAAAAACCCCA
* **
20872082 AACCCCAAACTTTAAACCTAAAAACCTTA
1 AA--CC---C--TAAACATAAAAACCCCA
* *
20872111 AACCCTAAACTTAAAAACCACA
1 AACCCTAAACATAAAAACCCCA
* *
20872133 AACCCTAAACCTAAAAA-CCCT
1 AACCCTAAACATAAAAACCCCA
* * *
20872154 AACCCTTAACTTAAAGACAACAAAACCTA
1 AACCCTAAACAT-AA-A-AAC----CCCA
* * *
20872183 AACCTTAAACTTAAAAACCACA
1 AACCCTAAACATAAAAACCCCA
* **
20872205 AACCCTAAACCTAAAAACCTTA
1 AACCCTAAACATAAAAACCCCA
** *
20872227 AACCCTAAATTTAAAAACCCTA
1 AACCCTAAACATAAAAACCCCA
20872249 AACCCTAAA
1 AACCCTAAA
20872258 ACCTTAACTT
Statistics
Matches: 211, Mismatches: 38, Indels: 30
0.76 0.14 0.11
Matches are distributed among these distances:
21 12 0.06
22 156 0.74
23 1 0.00
24 5 0.02
26 3 0.01
27 4 0.02
28 2 0.01
29 28 0.13
ACGTcount: A:0.52, C:0.31, G:0.00, T:0.16
Consensus pattern (22 bp):
AACCCTAAACATAAAAACCCCA
Found at i:20872033 original size:44 final size:44
Alignment explanation
Indices: 20871972--20872257 Score: 250
Period size: 44 Copynumber: 6.2 Consensus size: 44
20871962 CAAAAAGGGT
* *
20871972 AACCCTTAACTTAAAAACCCCAAACCCTAAACCTAAAAACCATA
1 AACCCTAAACATAAAAACCCCAAACCCTAAACCTAAAAACCATA
* *
20872016 AACTCTAAACATAAAAACCCCAAACCCTAAACATAAAAACCATA
1 AACCCTAAACATAAAAACCCCAAACCCTAAACCTAAAAACCATA
* *
20872060 AACCCTAAACTTAAAAACCCCAAACCCCAAACTTTAAACCTAAAAACCTTA
1 AACCCTAAACATAAAAACCCCAAA--CC---C--TAAACCTAAAAACCATA
* * *
20872111 AACCCTAAACTTAAAAACCACAAACCCTAAACCTAAAAACCCT-
1 AACCCTAAACATAAAAACCCCAAACCCTAAACCTAAAAACCATA
* * * * * *
20872154 AACCCTTAACTTAAAGACAACAAAACCTAAACCTTAAACTTAAAAACCACA
1 AACCCTAAACAT-AA-A-AAC----CCCAAACCCTAAACCTAAAAACCATA
* ** ** *
20872205 AACCCTAAACCTAAAAACCTTAAACCCTAAATTTAAAAACCCTA
1 AACCCTAAACATAAAAACCCCAAACCCTAAACCTAAAAACCATA
20872249 AACCCTAAA
1 AACCCTAAA
20872258 ACCTTAACTT
Statistics
Matches: 203, Mismatches: 24, Indels: 30
0.79 0.09 0.12
Matches are distributed among these distances:
43 11 0.05
44 109 0.54
45 1 0.00
46 6 0.03
48 3 0.01
49 4 0.02
50 21 0.10
51 48 0.24
ACGTcount: A:0.52, C:0.31, G:0.00, T:0.16
Consensus pattern (44 bp):
AACCCTAAACATAAAAACCCCAAACCCTAAACCTAAAAACCATA
Found at i:20872063 original size:51 final size:49
Alignment explanation
Indices: 20872008--20872219 Score: 159
Period size: 51 Copynumber: 4.3 Consensus size: 49
20871998 CTAAACCTAA
*
20872008 AAACCATAAACTCTAAACATAAAAACCCCAAACCCTAAACATAAAAACCAT
1 AAACCCTAAAC-CTAAACATAAAAACCCCAAACCCTAAAC-TAAAAACCAT
* ** *
20872059 AAACCCTAAA-CT-----TAAAAACCCCAAACCCCAAACTTTAAACCTAA
1 AAACCCTAAACCTAAACATAAAAACCCCAAACCCTAAACTAAAAACC-AT
* * * *
20872103 AAACCTTAAACCCTAAACTTAAAAACCACAAACCCTAAACCTAAAAACCCT
1 AAACCCTAAA-CCTAAACATAAAAACCCCAAACCCTAAA-CTAAAAACCAT
* * * * * * * *
20872154 -AACCCTTAACTTAAAGACAACAAAACCTAAACCTTAAACTTAAAAACCAC
1 AAACCCTAAACCTAAACATAA-AAACCCCAAACCCTAAAC-TAAAAACCAT
20872204 AAACCCTAAACCTAAA
1 AAACCCTAAACCTAAA
20872220 AACCTTAAAC
Statistics
Matches: 123, Mismatches: 26, Indels: 24
0.71 0.15 0.14
Matches are distributed among these distances:
43 6 0.05
44 30 0.24
46 2 0.02
49 10 0.08
50 28 0.23
51 40 0.33
52 7 0.06
ACGTcount: A:0.53, C:0.31, G:0.00, T:0.16
Consensus pattern (49 bp):
AAACCCTAAACCTAAACATAAAAACCCCAAACCCTAAACTAAAAACCAT
Found at i:20872135 original size:29 final size:29
Alignment explanation
Indices: 20872066--20872147 Score: 87
Period size: 29 Copynumber: 2.9 Consensus size: 29
20872056 CATAAACCCT
* * * *
20872066 AAACTTAAAAACCCCAAACCCCAAACTTT
1 AAACCTAAAAACCCTAAACCCTAAACTTA
*
20872095 AAACCTAAAAACCTTAAACCCTAAACTTAA
1 AAACCTAAAAACCCTAAACCCTAAACTT-A
*
20872125 AAACC-ACAAACCCTAAA-CCTAAA
1 AAACCTAAAAACCCTAAACCCTAAA
20872148 AACCCTAACC
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
28 6 0.13
29 34 0.76
30 5 0.11
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (29 bp):
AAACCTAAAAACCCTAAACCCTAAACTTA
Found at i:20872177 original size:43 final size:44
Alignment explanation
Indices: 20872094--20872187 Score: 136
Period size: 43 Copynumber: 2.2 Consensus size: 44
20872084 CCCCAAACTT
* * *
20872094 TAAACCTAAAAACCTTAAACCCTAAACTTAAAAACCACAAACCC
1 TAAACCTAAAAACCCTAAACCCTAAACTTAAAAACAACAAAACC
* *
20872138 TAAACCTAAAAACCCT-AACCCTTAACTTAAAGACAACAAAACC
1 TAAACCTAAAAACCCTAAACCCTAAACTTAAAAACAACAAAACC
20872181 TAAACCT
1 TAAACCT
20872188 TAAACTTAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 30 0.67
44 15 0.33
ACGTcount: A:0.51, C:0.31, G:0.01, T:0.17
Consensus pattern (44 bp):
TAAACCTAAAAACCCTAAACCCTAAACTTAAAAACAACAAAACC
Found at i:20872178 original size:29 final size:30
Alignment explanation
Indices: 20872146--20872216 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 30
20872136 CCTAAACCTA
* *
20872146 AAAACCCTAACCCTT-AACTTAAAGACAAC
1 AAAACCCTAAACCTTAAACTTAAAAACAAC
*
20872175 AAAA-CCTAAACCTTAAACTTAAAAACCAC
1 AAAACCCTAAACCTTAAACTTAAAAACAAC
20872204 -AAACCCTAAACCT
1 AAAACCCTAAACCT
20872217 AAAAACCTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 12 0.32
29 25 0.68
ACGTcount: A:0.51, C:0.31, G:0.01, T:0.17
Consensus pattern (30 bp):
AAAACCCTAAACCTTAAACTTAAAAACAAC
Found at i:20872229 original size:29 final size:29
Alignment explanation
Indices: 20872052--20872230 Score: 86
Period size: 29 Copynumber: 6.2 Consensus size: 29
20872042 CTAAACATAA
* * **
20872052 AAACCATAAACCCTAAACTTAAAAACCCC
1 AAACCACAAACCCTAAACCTAAAAACCTT
* **
20872081 AAACCCCAAACTTTAAACCTAAAAACCTT
1 AAACCACAAACCCTAAACCTAAAAACCTT
* * *
20872110 AAACC-CTAAA-CTTAAAAACC-ACAAACCCT
1 AAACCAC-AAACCCT--AAACCTAAAAACCTT
* * *
20872139 AAACCTAAAAACCCTAACCCT--TAA-CTT
1 AAACC-ACAAACCCTAAACCTAAAAACCTT
* * *
20872166 AAAGACAACAAAACCTAAACCT-TAAA-CTT
1 -AA-ACCACAAACCCTAAACCTAAAAACCTT
20872195 AAAAACCACAAACCCTAAACCTAAAAACCTT
1 --AAACCACAAACCCTAAACCTAAAAACCTT
20872226 AAACC
1 AAACC
20872231 CTAAATTTAA
Statistics
Matches: 114, Mismatches: 23, Indels: 26
0.70 0.14 0.16
Matches are distributed among these distances:
27 2 0.02
28 19 0.17
29 74 0.65
30 14 0.12
31 5 0.04
ACGTcount: A:0.51, C:0.32, G:0.01, T:0.16
Consensus pattern (29 bp):
AAACCACAAACCCTAAACCTAAAAACCTT
Found at i:20872251 original size:29 final size:28
Alignment explanation
Indices: 20872219--20872284 Score: 78
Period size: 30 Copynumber: 2.3 Consensus size: 28
20872209 CTAAACCTAA
20872219 AAACCTTAAACCCTAAATTTAAAAACCCT
1 AAACCTTAAACCCTAAATTT-AAAACCCT
* * *
20872248 AAACCCTAAAACCTTAACTTTAAAACCCT
1 AAA-CCTTAAACCCTAAATTTAAAACCCT
*
20872277 AACCCTTA
1 AAACCTTA
20872285 CGTTAAATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
28 4 0.13
29 13 0.42
30 14 0.45
ACGTcount: A:0.45, C:0.30, G:0.00, T:0.24
Consensus pattern (28 bp):
AAACCTTAAACCCTAAATTTAAAACCCT
Found at i:20880708 original size:19 final size:18
Alignment explanation
Indices: 20880680--20880720 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
20880670 CTAAATATAT
*
20880680 TATTTACATATTTAACATA
1 TATTTACATATCTAA-ATA
*
20880699 TATTTGCATATCTAAATA
1 TATTTACATATCTAAATA
20880717 TATT
1 TATT
20880721 CCCTGGTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.39, C:0.10, G:0.02, T:0.49
Consensus pattern (18 bp):
TATTTACATATCTAAATA
Found at i:20882576 original size:28 final size:29
Alignment explanation
Indices: 20882528--20882591 Score: 78
Period size: 28 Copynumber: 2.2 Consensus size: 29
20882518 TGTAACTATC
*
20882528 TTTTCTATTTTTAATAAAAATTAAAT-AT
1 TTTTATATTTTTAATAAAAATTAAATCAT
* *
20882556 TTCTTATATTTTT-ATTAAAATTTAATCAT
1 TT-TTATATTTTTAATAAAAATTAAATCAT
20882585 TTTTATA
1 TTTTATA
20882592 AAATTTATTG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
28 18 0.58
29 13 0.42
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.58
Consensus pattern (29 bp):
TTTTATATTTTTAATAAAAATTAAATCAT
Found at i:20882588 original size:20 final size:20
Alignment explanation
Indices: 20882563--20882610 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 20
20882553 TATTTCTTAT
20882563 ATTTTTATTAAAATTTAATC
1 ATTTTTATTAAAATTTAATC
* *
20882583 ATTTTTA-TAAAATTTATTG
1 ATTTTTATTAAAATTTAATC
20882602 ATTTTTATT
1 ATTTTTATT
20882611 TTTTATCATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.60
Consensus pattern (20 bp):
ATTTTTATTAAAATTTAATC
Found at i:20883574 original size:15 final size:15
Alignment explanation
Indices: 20883554--20883587 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
20883544 TTGCTTGGAT
20883554 CACCCCTCGGAACCA
1 CACCCCTCGGAACCA
*
20883569 CACCCCTTGGAACCA
1 CACCCCTCGGAACCA
20883584 CACC
1 CACC
20883588 GCTCACACCG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.26, C:0.53, G:0.12, T:0.09
Consensus pattern (15 bp):
CACCCCTCGGAACCA
Found at i:20891739 original size:31 final size:31
Alignment explanation
Indices: 20891704--20891910 Score: 222
Period size: 31 Copynumber: 6.7 Consensus size: 31
20891694 TTATATGTTT
* *
20891704 TATACGTTGCCAAATTTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* * * *
20891735 TATACATTGTCGAATTTGAATTGTTTATAAA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* * *
20891766 TATACATTGCCGAATTTGATTGGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
20891797 TATACATTGTCGAATTTGACTTT-TATATGGA
1 TATACATTGCCGAATTTGA-TTTGTATATAGA
*
20891828 TATACATTGCCGAA-TTGATTTGTATGTAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
** * *
20891858 TATACATTGTTGAATTTGATTCGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
20891889 TATATATTGTCGAA-TTGATTTG
1 TATACATTGCCGAATTTGATTTG
20891911 AGCATTGGAT
Statistics
Matches: 146, Mismatches: 27, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
29 3 0.02
30 29 0.20
31 112 0.77
32 2 0.01
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.44
Consensus pattern (31 bp):
TATACATTGCCGAATTTGATTTGTATATAGA
Found at i:20891876 original size:61 final size:62
Alignment explanation
Indices: 20891704--20891910 Score: 251
Period size: 62 Copynumber: 3.4 Consensus size: 62
20891694 TTATATGTTT
* * * **
20891704 TATACGTTGCCAAATTTGATTTGTATATAGATATACATTGTCGAATTTGAATTGTT-TATAAA
1 TATACATTGCCGAATTTGATTTGTATATAGATATACATTGTCGAATTTG-ATTCTTATATGGA
* * *
20891766 TATACATTGCCGAATTTGATTGGTATATGGTTATACATTGTCGAATTTGACTT-TTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATAGATATACATTGTCGAATTTGA-TTCTTATATGGA
* * *
20891828 TATACATTGCCGAA-TTGATTTGTATGTAGATATACATTGTTGAATTTGATTCGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATAGATATACATTGTCGAATTTGATTCTTATATGGA
* *
20891889 TATATATTGTCGAA-TTGATTTG
1 TATACATTGCCGAATTTGATTTG
20891911 AGCATTGGAT
Statistics
Matches: 127, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
60 2 0.02
61 61 0.48
62 64 0.50
ACGTcount: A:0.30, C:0.08, G:0.18, T:0.44
Consensus pattern (62 bp):
TATACATTGCCGAATTTGATTTGTATATAGATATACATTGTCGAATTTGATTCTTATATGGA
Found at i:20891920 original size:92 final size:93
Alignment explanation
Indices: 20891716--20891920 Score: 229
Period size: 92 Copynumber: 2.2 Consensus size: 93
20891706 TACGTTGCCA
* * * *
20891716 AATTTGA-TTTGTATATAGATATACATTGTCGAATTTGAATTGTTTATAAATATACATTGCCGAA
1 AATTTGACTTTG-ACATGGATATACATTGCCGAATTTGAATTGTATATAAATATACATTGCCGAA
* *
20891780 TTTGATTGGTATATGGTTATACATTGTCG
65 TTTGATTCGTATATGGATATACATTGTCG
* * * * * **
20891809 AATTTGACTTTTATATGGATATACATTGCCGAA-TTGATTTGTATGTAGATATACATTGTTGAAT
1 AATTTGACTTTGACATGGATATACATTGCCGAATTTGAATTGTATATAAATATACATTGCCGAAT
*
20891873 TTGATTCGTATATGGATATATATTGTCG
66 TTGATTCGTATATGGATATACATTGTCG
20891901 AA-TTGA-TTTGAGCATTGGAT
1 AATTTGACTTTGA-CA-TGGAT
20891921 GACTAGTTTC
Statistics
Matches: 95, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
90 4 0.04
91 5 0.05
92 57 0.60
93 26 0.27
94 3 0.03
ACGTcount: A:0.30, C:0.07, G:0.19, T:0.44
Consensus pattern (93 bp):
AATTTGACTTTGACATGGATATACATTGCCGAATTTGAATTGTATATAAATATACATTGCCGAAT
TTGATTCGTATATGGATATACATTGTCG
Found at i:20892082 original size:43 final size:43
Alignment explanation
Indices: 20892035--20892162 Score: 195
Period size: 43 Copynumber: 3.0 Consensus size: 43
20892025 TGTGATTTTA
**
20892035 TGTAAGACCATAGCTGGGCTATTACCATCGATTTGAGATTTCG
1 TGTAAGACCATAGCTGGGCTATTGGCATCGATTTGAGATTTCG
*
20892078 TGTAAGAACATAGCTGGGCTATTGGCATCGATTTGAGACTTT-G
1 TGTAAGACCATAGCTGGGCTATTGGCATCGATTTGAGA-TTTCG
**
20892121 TGTAAGACCATAGCTGGGCTATTGGCATCGATACGAGATTTC
1 TGTAAGACCATAGCTGGGCTATTGGCATCGATTTGAGATTTC
20892163 CATGTAGGAC
Statistics
Matches: 77, Mismatches: 6, Indels: 4
0.89 0.07 0.05
Matches are distributed among these distances:
42 3 0.04
43 71 0.92
44 3 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATAGCTGGGCTATTGGCATCGATTTGAGATTTCG
Found at i:20893914 original size:139 final size:140
Alignment explanation
Indices: 20893651--20893931 Score: 521
Period size: 139 Copynumber: 2.0 Consensus size: 140
20893641 TATATATATA
20893651 TTAATTATATGTCAAAGTTTGGTGATGTGAGTTATGTTTGCATGATACATGATGAGTTGTGGGAC
1 TTAATTATATG-CAAAGTTTGGTGATGTGAGTTATGTTTGCATGATACATGATGAGTTGTGGGAC
20893716 CCACATTTGTTGATGACGTCATAAGCAGAGAGTTACACCGGCTGAGGACACGGGCGTGTC-CTGA
65 CCACATTTGTTGATGACGTCATAAGCAGAGAGTTACACCGGCTGAGGACACGGGCGTGTCTC-GA
*
20893780 GTCACATGGGCG
129 GCCACATGGGCG
20893792 TTAATTATATG-AAAGTTTGGTGATGTGAGTTATGTTTGCATGATACATGATGAGTTGTGGGACC
1 TTAATTATATGCAAAGTTTGGTGATGTGAGTTATGTTTGCATGATACATGATGAGTTGTGGGACC
20893856 CACATTTGTTGATGACGTCATAAGCAGAGAGTTACACCGGCTGAGGACACGGGCGTGTCTCGAGC
66 CACATTTGTTGATGACGTCATAAGCAGAGAGTTACACCGGCTGAGGACACGGGCGTGTCTCGAGC
20893921 CACATGGGCG
131 CACATGGGCG
20893931 T
1 T
20893932 GTGGCCCTCC
Statistics
Matches: 138, Mismatches: 1, Indels: 4
0.97 0.01 0.03
Matches are distributed among these distances:
139 126 0.91
140 1 0.01
141 11 0.08
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.30
Consensus pattern (140 bp):
TTAATTATATGCAAAGTTTGGTGATGTGAGTTATGTTTGCATGATACATGATGAGTTGTGGGACC
CACATTTGTTGATGACGTCATAAGCAGAGAGTTACACCGGCTGAGGACACGGGCGTGTCTCGAGC
CACATGGGCG
Found at i:20898442 original size:31 final size:31
Alignment explanation
Indices: 20898407--20898607 Score: 269
Period size: 31 Copynumber: 6.5 Consensus size: 31
20898397 TTATATGTTT
*
20898407 TATACATTGTCGAATTTGATTTGTATATAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* * * *
20898438 TATACATTGCTGAATTTGAATTGTTTGTAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
20898469 TATACATTGCCGAATTTGATTTGTATATGGT
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
20898500 TATACATTGTCGAATTTGATTTGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
*
20898531 TATACATTGCCGAA-TTGATTTGTATGTAGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
20898561 TATACATTGCCGAATTTGATTCGTATATGGA
1 TATACATTGCCGAATTTGATTTGTATATAGA
* *
20898592 TATATATTGCTGAATT
1 TATACATTGCCGAATT
20898608 GCTTTGAGCA
Statistics
Matches: 148, Mismatches: 21, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
30 28 0.19
31 120 0.81
ACGTcount: A:0.29, C:0.08, G:0.18, T:0.44
Consensus pattern (31 bp):
TATACATTGCCGAATTTGATTTGTATATAGA
Found at i:20898623 original size:92 final size:93
Alignment explanation
Indices: 20898407--20898600 Score: 300
Period size: 92 Copynumber: 2.1 Consensus size: 93
20898397 TTATATGTTT
* * * *
20898407 TATACATTGTCGAATTTGATTTGTATATAGATATACATTGCTGAATTTGAATTGTTTGTAGATAT
1 TATACATTGTCGAATTTGATTTGCATATGGATATACATTGCCGAATTTGAATTGTATGTAGATAT
* *
20898472 ACATTGCCGAATTTGATTTGTATATGGT
66 ACATTGCCGAATTTGATTCGTATATGGA
* *
20898500 TATACATTGTCGAATTTGATTTGTATATGGATATACATTGCCGAA-TTGATTTGTATGTAGATAT
1 TATACATTGTCGAATTTGATTTGCATATGGATATACATTGCCGAATTTGAATTGTATGTAGATAT
20898564 ACATTGCCGAATTTGATTCGTATATGGA
66 ACATTGCCGAATTTGATTCGTATATGGA
*
20898592 TATATATTG
1 TATACATTG
20898601 CTGAATTGCT
Statistics
Matches: 94, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
92 51 0.54
93 43 0.46
ACGTcount: A:0.29, C:0.08, G:0.19, T:0.44
Consensus pattern (93 bp):
TATACATTGTCGAATTTGATTTGCATATGGATATACATTGCCGAATTTGAATTGTATGTAGATAT
ACATTGCCGAATTTGATTCGTATATGGA
Found at i:20898801 original size:43 final size:43
Alignment explanation
Indices: 20898748--20898878 Score: 199
Period size: 43 Copynumber: 3.0 Consensus size: 43
20898738 TGTCAGACTG
20898748 TAGCTGGGCTATTGGCATCGATATGAGATTTCATGTAAGACCA
1 TAGCTGGGCTATTGGCATCGATATGAGATTTCATGTAAGACCA
* * *
20898791 TAGCTAGGCTATTGGCATCGATTTGAGATTTCGTGTAAGACCA
1 TAGCTGGGCTATTGGCATCGATATGAGATTTCATGTAAGACCA
* * *
20898834 TAGTTGGGCTATTGGCATCAATACGAGATTTCCATGTAAGACCA
1 TAGCTGGGCTATTGGCATCGATATGAGATTT-CATGTAAGACCA
20898878 T
1 T
20898879 GTCTGGGACA
Statistics
Matches: 78, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
43 66 0.85
44 12 0.15
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.31
Consensus pattern (43 bp):
TAGCTGGGCTATTGGCATCGATATGAGATTTCATGTAAGACCA
Found at i:20901424 original size:28 final size:27
Alignment explanation
Indices: 20901346--20901413 Score: 100
Period size: 27 Copynumber: 2.5 Consensus size: 27
20901336 ATGATCGGGT
* *
20901346 AGGGTAAAATGATCGAATTACCCCCAC
1 AGGGTAAAATGACCGAAATACCCCCAC
*
20901373 AGGGTAAAATGACCGAAATACCCCCAT
1 AGGGTAAAATGACCGAAATACCCCCAC
20901400 AGGGGTAAAATGAC
1 A-GGGTAAAATGAC
20901414 TGTTATACCC
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
27 25 0.68
28 12 0.32
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.16
Consensus pattern (27 bp):
AGGGTAAAATGACCGAAATACCCCCAC
Found at i:20901852 original size:28 final size:28
Alignment explanation
Indices: 20901778--20901866 Score: 99
Period size: 28 Copynumber: 3.2 Consensus size: 28
20901768 ACTGTACCGA
* * *
20901778 TACTGTATTAGGCTAGGGACCACATGGT
1 TACTGTATTAGGCTAAGGCCCACATTGT
*
20901806 TACTGTATTGGGCTAAGGCCCACATTGT
1 TACTGTATTAGGCTAAGGCCCACATTGT
* * * *
20901834 TACTGTATTTGACTAAGGCCTACACTG-
1 TACTGTATTAGGCTAAGGCCCACATTGT
20901861 TACTGT
1 TACTGT
20901867 TACTCAATAG
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
27 6 0.11
28 47 0.89
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (28 bp):
TACTGTATTAGGCTAAGGCCCACATTGT
Found at i:20907731 original size:26 final size:28
Alignment explanation
Indices: 20907702--20907768 Score: 86
Period size: 27 Copynumber: 2.5 Consensus size: 28
20907692 GCACAAATCA
*
20907702 GTCA-TTTACCCTT-TAGGGGCATTACG
1 GTCATTTTACCCTTACAGGGGCATTACG
* *
20907728 GTCATTTTA-CCTTACAGGGGTATTTCG
1 GTCATTTTACCCTTACAGGGGCATTACG
20907755 GTCATTTTACCCTT
1 GTCATTTTACCCTT
20907769 CGAGGGTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 8 0.23
27 23 0.66
28 4 0.11
ACGTcount: A:0.18, C:0.22, G:0.19, T:0.40
Consensus pattern (28 bp):
GTCATTTTACCCTTACAGGGGCATTACG
Found at i:20907775 original size:27 final size:27
Alignment explanation
Indices: 20907716--20907787 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
20907706 TTTACCCTTT
* *
20907716 AGGGGCATTACGGTCATTTTACCTTAC
1 AGGGGTATTTCGGTCATTTTACCTTAC
20907743 AGGGGTATTTCGGTCATTTTACCCTT-C
1 AGGGGTATTTCGGTCATTTTA-CCTTAC
*
20907770 -GAGGGTATTTCAGTCATT
1 AG-GGGTATTTCGGTCATT
20907788 CAACAACCTT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
26 1 0.03
27 35 0.88
28 4 0.10
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (27 bp):
AGGGGTATTTCGGTCATTTTACCTTAC
Found at i:20914871 original size:137 final size:137
Alignment explanation
Indices: 20914625--20914885 Score: 344
Period size: 137 Copynumber: 1.9 Consensus size: 137
20914615 ATGTCATTAG
* * * * * * * *
20914625 GGTTACCATGTTTCGGGTGCTGGTTCTAAATGTCTTACCGATGGCTGAGTTTTGACATTTGTTGC
1 GGTTACAATGTTTCAGGTGCTGGTCCTAAATGTCCTACCGATGGCTAAGGTCTGACATTTGTTAC
* * *
20914690 GGATACTCATCAACTTATGTGAGTGGCAACATGTAGCTACATTCCAACTGTCAGCTTGTATGAGC
66 GAATACTCATCAACTTATGTGAGTGGCAACATGTACCTACATTCCAACCGTCAGCTTGTATGAGC
20914755 AGACCTA
131 AGACCTA
* *
20914762 GGTTACAATGTTTCAGGTGCTGGTCCTGAATGTCCTACCGATGGCTAAGGTCTGGCATTTGTTAC
1 GGTTACAATGTTTCAGGTGCTGGTCCTAAATGTCCTACCGATGGCTAAGGTCTGACATTTGTTAC
* * * * *
20914827 GAATACTCATCAGCTTGTGTGAAG-GGCATCGTGTACCTATATTCCAACCGTCAGCTTGT
66 GAATACTCATCAACTTATGTG-AGTGGCAACATGTACCTACATTCCAACCGTCAGCTTGT
20914886 GTGAACAGCA
Statistics
Matches: 105, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
137 103 0.98
138 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.33
Consensus pattern (137 bp):
GGTTACAATGTTTCAGGTGCTGGTCCTAAATGTCCTACCGATGGCTAAGGTCTGACATTTGTTAC
GAATACTCATCAACTTATGTGAGTGGCAACATGTACCTACATTCCAACCGTCAGCTTGTATGAGC
AGACCTA
Found at i:20914902 original size:41 final size:42
Alignment explanation
Indices: 20914836--20914931 Score: 122
Period size: 42 Copynumber: 2.3 Consensus size: 42
20914826 CGAATACTCA
** *
20914836 TCAGCTTGTGTGAAGGGCATCGTGTA-CCTATATTCCAACCG
1 TCAGCTTGTGTGAACAGCATCGTGTAGCCTACATTCCAACCG
* * *
20914877 TCAGCTTGTGTGAACAGCATTGTGTAGCTTACATTCCTACCG
1 TCAGCTTGTGTGAACAGCATCGTGTAGCCTACATTCCAACCG
*
20914919 CCAGCTTGTGTGA
1 TCAGCTTGTGTGA
20914932 GCAAGCCCAT
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 23 0.49
42 24 0.51
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.31
Consensus pattern (42 bp):
TCAGCTTGTGTGAACAGCATCGTGTAGCCTACATTCCAACCG
Found at i:20915652 original size:20 final size:20
Alignment explanation
Indices: 20915627--20915664 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
20915617 TTTAAGCTAT
20915627 AGTAAGTAAATGCAATGGAA
1 AGTAAGTAAATGCAATGGAA
*
20915647 AGTAAGTAAATGGAATGG
1 AGTAAGTAAATGCAATGG
20915665 TTCAAAGTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.03, G:0.29, T:0.21
Consensus pattern (20 bp):
AGTAAGTAAATGCAATGGAA
Found at i:20917238 original size:41 final size:41
Alignment explanation
Indices: 20917188--20917293 Score: 167
Period size: 41 Copynumber: 2.6 Consensus size: 41
20917178 TTAATTAAAA
*
20917188 CAGATTCACCAGCACTTAGCCTGCTAGGCTTAAAGCCTGATT
1 CAGA-TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATT
* *
20917230 TAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATT
*
20917271 CAGTTCACCGGCACTTAGCCTGC
1 CAGATCACCGGCACTTAGCCTGC
20917294 CCTGAATTGA
Statistics
Matches: 59, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
41 56 0.95
42 3 0.05
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATT
Found at i:20925298 original size:249 final size:253
Alignment explanation
Indices: 20924849--20925367 Score: 848
Period size: 249 Copynumber: 2.0 Consensus size: 253
20924839 ATGCAAATAT
20924849 ATATATTATTCAAATACATATGCCAAAAGCAAATAATTAATACTTATCAACCACAAGTGCCGAAT
1 ATATATTATTCAAATACATATGCCAAAAGCAAATAATTAATACTTATCAACCACAAGTGCCGAAT
20924914 GCACATACATATATACTTATAATTTACATATGCCAAATGCATACATATATATATATATATATCCA
66 GCACATACATATATACTTATAATTTACATATGCCAAATGCATAC------A-ATATATATATCCA
* *
20924979 ACAATTACATGATAACCAATATATATATATATATATACTCACCAAACACAAAGATTTGAGCTTTT
124 ACAATTACATGATAACC---A-ATATATATATATACACTCACCAAACACAAAGATTCGAGCTTTT
20925044 ATATGCTCATCAAAAACATAGAAACAGATGTTCATATATTTATCCAATACAAATAACCAAATCAT
185 ATATGCTCATCAAAAACATAGAAACAGATGTTCATATATTTATCCAATACAAATAACCAAATCAT
20925109 ATAC
250 ATAC
* * *
20925113 ATATATTATTCAAATACATATGCCAAAAGTAAATAATT-ATACTTATCAACCACATGTGCGGAAT
1 ATATATTATTCAAATACATATGCCAAAAGCAAATAATTAATACTTATCAACCACAAGTGCCGAAT
* *
20925177 GCACATATATATATACTTATAATTTACATATGCCAAATGCATAC-ATATATATATCCAACAATTT
66 GCACATACATATATACTTATAATTTACATATGCCAAATGCATACAATATATATATCCAACAATTA
20925241 CATGATAACC-A-ATATATATATACACTCACCAAACACAAAGATTCGAGCTTTTATATGCTCATC
131 CATGATAACCAATATATATATATACACTCACCAAACACAAAGATTCGAGCTTTTATATGCTCATC
20925304 AAAAACATAGAAACAGATGTTCATATATTTATCCAATACAAATAACCAAATCATATAC
196 AAAAACATAGAAACAGATGTTCATATATTTATCCAATACAAATAACCAAATCATATAC
20925362 ATATAT
1 ATATAT
20925368 ACCCAATGTA
Statistics
Matches: 248, Mismatches: 7, Indels: 15
0.92 0.03 0.06
Matches are distributed among these distances:
249 114 0.46
250 1 0.00
255 29 0.12
263 67 0.27
264 37 0.15
ACGTcount: A:0.45, C:0.18, G:0.06, T:0.31
Consensus pattern (253 bp):
ATATATTATTCAAATACATATGCCAAAAGCAAATAATTAATACTTATCAACCACAAGTGCCGAAT
GCACATACATATATACTTATAATTTACATATGCCAAATGCATACAATATATATATCCAACAATTA
CATGATAACCAATATATATATATACACTCACCAAACACAAAGATTCGAGCTTTTATATGCTCATC
AAAAACATAGAAACAGATGTTCATATATTTATCCAATACAAATAACCAAATCATATAC
Found at i:20925447 original size:41 final size:41
Alignment explanation
Indices: 20925402--20925630 Score: 347
Period size: 41 Copynumber: 5.6 Consensus size: 41
20925392 TAAAATAGAT
20925402 TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGA
20925443 TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGA
20925484 TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGA
* * * *
20925525 TCACCGGCACTTAGCCTGCTAGGCTTATATCTTGATTCAGT
1 TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGA
* *
20925566 TCACCGGCACTTAGCCTGCTAAGCTTTAAGCCTGAATT--GA
1 TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTG-ATTCAGA
*
20925606 TTCACCGGCAATATA-CCTGCTAGGC
1 -TCACCGGCACT-TAGCCTGCTAGGC
20925631 GCTGAGCCTG
Statistics
Matches: 173, Mismatches: 12, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
40 1 0.01
41 167 0.97
42 5 0.03
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (41 bp):
TCACCGGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGA
Found at i:20925787 original size:41 final size:41
Alignment explanation
Indices: 20925740--20925851 Score: 127
Period size: 41 Copynumber: 2.7 Consensus size: 41
20925730 TATATCATTA
**
20925740 GGCACTTAGCCTGTTAGGCTTAAAGCCTGATTCAGATCAGT
1 GGCACTTAGCCTGTTAGGCTTAAAGCCTGATTCAGATCACC
* * * *
20925781 GGCACTTAGCCTGCTAGGCTTATAGCTTGATTCAGTTCACC
1 GGCACTTAGCCTGTTAGGCTTAAAGCCTGATTCAGATCACC
* * *
20925822 AGCACATAGCCT-TCTAGGCTTTAAGCCTGA
1 GGCACTTAGCCTGT-TAGGCTTAAAGCCTGA
20925852 ATTGATTCAC
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.23, C:0.25, G:0.22, T:0.29
Consensus pattern (41 bp):
GGCACTTAGCCTGTTAGGCTTAAAGCCTGATTCAGATCACC
Found at i:20925861 original size:41 final size:41
Alignment explanation
Indices: 20925741--20925880 Score: 124
Period size: 41 Copynumber: 3.4 Consensus size: 41
20925731 ATATCATTAG
* * * * ***
20925741 GCACTTAGCCTGTTAGGCTTAAAGCCTGATTCAGATCAGTG
1 GCACATAGCCTGCTAGGCTTATAGCCTGATTCAGTTCACCA
* *
20925782 GCACTTAGCCTGCTAGGCTTATAGCTTGATTCAGTTCACCA
1 GCACATAGCCTGCTAGGCTTATAGCCTGATTCAGTTCACCA
* *
20925823 GCACATAGCCTTCTAGGCTT-TAAGCCTGAATTGA-TTCACCA
1 GCACATAGCCTGCTAGGCTTAT-AGCCTG-ATTCAGTTCACCA
*
20925864 GCA-ATATACCTGCTAGG
1 GCACATA-GCCTGCTAGG
20925881 TGATGAGCCT
Statistics
Matches: 83, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
40 4 0.05
41 75 0.90
42 4 0.05
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (41 bp):
GCACATAGCCTGCTAGGCTTATAGCCTGATTCAGTTCACCA
Found at i:20925933 original size:251 final size:251
Alignment explanation
Indices: 20925489--20925989 Score: 876
Period size: 251 Copynumber: 2.0 Consensus size: 251
20925479 TCAGATCACC
20925489 GGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATA
1 GGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATA
* * * *
20925554 TCTTGATTCAGTTCACCGGCACTTAGCCTGCTAAGCTTTAAGCCTGAATTGATTCACCGGCAATA
66 GCTTGATTCAGTTCACCAGCACATAGCCTGCTAAGCTTTAAGCCTGAATTGATTCACCAGCAATA
* *
20925619 TACCTGCTAGGCGCTGAGCCTGAATACGCAATTCACATCAGATATAATTCATTTTCGAACTATAT
131 TACCTGCTAGGCGATGAGCCTGAATACGCAATTCACATCAGATATAATTCATTTTCAAACTATAT
20925684 TTGTATACAAGTACATGCATAAAGATTTAGCTTAAAATTCATAACTTATATCATTA
196 TTGTATACAAGTACATGCATAAAGATTTAGCTTAAAATTCATAACTTATATCATTA
* **
20925740 GGCACTTAGCCTGTTAGGCTTAAAGCCTGATTCAGATCAGTGGCACTTAGCCTGCTAGGCTTATA
1 GGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATA
* *
20925805 GCTTGATTCAGTTCACCAGCACATAGCCTTCTAGGCTTTAAGCCTGAATTGATTCACCAGCAATA
66 GCTTGATTCAGTTCACCAGCACATAGCCTGCTAAGCTTTAAGCCTGAATTGATTCACCAGCAATA
*
20925870 TACCTGCTAGGTGATGAGCCTGAATACGCAATTCACATCAGATATAATTCATTTTCAAACTATAT
131 TACCTGCTAGGCGATGAGCCTGAATACGCAATTCACATCAGATATAATTCATTTTCAAACTATAT
* *
20925935 TTGTATAGAAGTCCATGCATAAAGATTTAGCTTAAAATTCATAACTTATATCATT
196 TTGTATACAAGTACATGCATAAAGATTTAGCTTAAAATTCATAACTTATATCATT
20925990 GATACACATG
Statistics
Matches: 236, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
251 236 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.32
Consensus pattern (251 bp):
GGCACTTAGCCTGCTAGGCTTAAAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATA
GCTTGATTCAGTTCACCAGCACATAGCCTGCTAAGCTTTAAGCCTGAATTGATTCACCAGCAATA
TACCTGCTAGGCGATGAGCCTGAATACGCAATTCACATCAGATATAATTCATTTTCAAACTATAT
TTGTATACAAGTACATGCATAAAGATTTAGCTTAAAATTCATAACTTATATCATTA
Found at i:20926069 original size:2 final size:2
Alignment explanation
Indices: 20926062--20926086 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
20926052 AGAATACATT
20926062 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
20926087 CATTATACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:20929370 original size:25 final size:25
Alignment explanation
Indices: 20929336--20929480 Score: 227
Period size: 25 Copynumber: 5.8 Consensus size: 25
20929326 CAAGCCCATT
* **
20929336 TTCACAGCTCGTGTGAGCATTCTAA
1 TTCACAGCTCATGTGAGCATTCTGG
20929361 TTCACAGCTCATGTGAGCATTCTGG
1 TTCACAGCTCATGTGAGCATTCTGG
20929386 TTCACAGCTCATGTGAGCATTCTGG
1 TTCACAGCTCATGTGAGCATTCTGG
20929411 TTCACAGCTCATGTGAGCATTCTGG
1 TTCACAGCTCATGTGAGCATTCTGG
*
20929436 TTCACAGCTCATGTGAGCATTCTGA
1 TTCACAGCTCATGTGAGCATTCTGG
* * *
20929461 TCCACAGCTCGTGTAAGCAT
1 TTCACAGCTCATGTGAGCAT
20929481 ACATGTACAT
Statistics
Matches: 113, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 113 1.00
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.31
Consensus pattern (25 bp):
TTCACAGCTCATGTGAGCATTCTGG
Found at i:20930145 original size:20 final size:19
Alignment explanation
Indices: 20930122--20930163 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
20930112 TAAAGAAATT
20930122 AAATAC-AATGGAAAGTAATG
1 AAATACAAAT-GAAAGTAA-G
*
20930142 AAATGCAAATGAAAGTAAG
1 AAATACAAATGAAAGTAAG
20930161 AAA
1 AAA
20930164 ATTTGAAAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 13 0.65
21 3 0.15
ACGTcount: A:0.60, C:0.05, G:0.19, T:0.17
Consensus pattern (19 bp):
AAATACAAATGAAAGTAAG
Found at i:20934406 original size:20 final size:20
Alignment explanation
Indices: 20934375--20934430 Score: 87
Period size: 20 Copynumber: 2.8 Consensus size: 20
20934365 AGACGATGAA
20934375 CCATTCCATTTACTTACTTT
1 CCATTCCATTTACTTACTTT
*
20934395 CTACTT-CATTTACTTACTTT
1 CCA-TTCCATTTACTTACTTT
20934415 CCATTCCATTTACTTA
1 CCATTCCATTTACTTA
20934431 GCATAAGCTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 2 0.06
20 28 0.88
21 2 0.06
ACGTcount: A:0.21, C:0.29, G:0.00, T:0.50
Consensus pattern (20 bp):
CCATTCCATTTACTTACTTT
Found at i:20939315 original size:17 final size:18
Alignment explanation
Indices: 20939293--20939327 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
20939283 ATTTTAGATA
*
20939293 AATATTATATT-AAATTT
1 AATATTAAATTGAAATTT
20939310 AATATTAAATTGAAATTT
1 AATATTAAATTGAAATTT
20939328 TGGATTAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (18 bp):
AATATTAAATTGAAATTT
Found at i:20942443 original size:21 final size:23
Alignment explanation
Indices: 20942401--20942443 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
20942391 TAATTAATCA
*
20942401 TAAACAGAAGCAAATCTCTTTTC
1 TAAACAGAAGCAAATATCTTTTC
*
20942424 TAAA-AGAAG-AAATATGTTTT
1 TAAACAGAAGCAAATATCTTTT
20942444 AAAAAATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.33
Consensus pattern (23 bp):
TAAACAGAAGCAAATATCTTTTC
Found at i:20942499 original size:21 final size:22
Alignment explanation
Indices: 20942475--20942519 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
20942465 AGAAAAAGAG
20942475 AAATACAAAAAAG-AATAG-ATC
1 AAAT-CAAAAAAGAAATAGAATC
*
20942496 AAATCAAGAAAGAAATAGAATC
1 AAATCAAAAAAGAAATAGAATC
20942518 AA
1 AA
20942520 CGATTTGCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 7 0.33
21 9 0.43
22 5 0.24
ACGTcount: A:0.67, C:0.09, G:0.11, T:0.13
Consensus pattern (22 bp):
AAATCAAAAAAGAAATAGAATC
Found at i:20945452 original size:35 final size:35
Alignment explanation
Indices: 20945321--20945452 Score: 176
Period size: 35 Copynumber: 3.8 Consensus size: 35
20945311 AAATGATACA
* *
20945321 TGAATAGGAGAGATTCCCTGCAACAACATAATGCG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
* * * *
20945356 TGAACAGGAGAGATTCCTTGCAA-GAAATGATGTG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
*
20945390 TGAACAGGAGAGGTTCCCTGCAACAAAATAATGCG
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
* *
20945425 TGAACAGGAAATATTCCCTGCAACAAAA
1 TGAACAGGAGAGATTCCCTGCAACAAAA
20945453 GACAAGTGAA
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
34 28 0.34
35 54 0.66
ACGTcount: A:0.39, C:0.18, G:0.23, T:0.20
Consensus pattern (35 bp):
TGAACAGGAGAGATTCCCTGCAACAAAATAATGCG
Found at i:20945462 original size:69 final size:69
Alignment explanation
Indices: 20945321--20945462 Score: 185
Period size: 69 Copynumber: 2.1 Consensus size: 69
20945311 AAATGATACA
* * * * * *
20945321 TGAATAGGAGAGATTCCCTGCAACAACATAATGCGTGAACAGGAGAGATTCCTTGCAAGAAATGA
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAAAGATTCCCTGCAACAAAAGA
***
20945386 TGTG
66 CAAG
* *
20945390 TGAACAGGAGAGGTTCCCTGCAACAAAATAATGCGTGAACAGGAAATATTCCCTGCAACAAAAGA
1 TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAAAGATTCCCTGCAACAAAAGA
20945455 CAAG
66 CAAG
20945459 TGAA
1 TGAA
20945463 TAGTTCTGTA
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
69 62 1.00
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.19
Consensus pattern (69 bp):
TGAACAGGAGAGATTCCCTGCAACAAAATAATGCGTGAACAGGAAAGATTCCCTGCAACAAAAGA
CAAG
Found at i:20945720 original size:21 final size:21
Alignment explanation
Indices: 20945696--20945750 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
20945686 AATTTAATTT
20945696 TTAAGTTTCCAAATTTTCAAA
1 TTAAGTTTCCAAATTTTCAAA
*
20945717 TTAAGTTTTCAAATTTTCAAA
1 TTAAGTTTCCAAATTTTCAAA
*
20945738 TCAAGTTTCCAAA
1 TTAAGTTTCCAAA
20945751 CTTTAAGCTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.38, C:0.15, G:0.05, T:0.42
Consensus pattern (21 bp):
TTAAGTTTCCAAATTTTCAAA
Found at i:20947650 original size:15 final size:14
Alignment explanation
Indices: 20947626--20947655 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
20947616 GAAACGCTAG
20947626 TTTCAGAGCTCCAT
1 TTTCAGAGCTCCAT
20947640 TTTCTAGAGCTCCAT
1 TTTC-AGAGCTCCAT
20947655 T
1 T
20947656 AATTTATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.20, C:0.27, G:0.13, T:0.40
Consensus pattern (14 bp):
TTTCAGAGCTCCAT
Found at i:20953462 original size:12 final size:12
Alignment explanation
Indices: 20953447--20953478 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
20953437 TATCGAATTA
20953447 AATTAATTCAAT
1 AATTAATTCAAT
20953459 AATTAATTCAAT
1 AATTAATTCAAT
20953471 AATTAATT
1 AATTAATT
20953479 TAATTCATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (12 bp):
AATTAATTCAAT
Found at i:20965395 original size:18 final size:18
Alignment explanation
Indices: 20965372--20965408 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
20965362 CTTTTGGTTC
20965372 TTCATGAATGTAAATAGT
1 TTCATGAATGTAAATAGT
20965390 TTCATGAATGTAAATAGT
1 TTCATGAATGTAAATAGT
20965408 T
1 T
20965409 CGAACTCATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.16, T:0.41
Consensus pattern (18 bp):
TTCATGAATGTAAATAGT
Found at i:20967579 original size:67 final size:67
Alignment explanation
Indices: 20967469--20967602 Score: 232
Period size: 67 Copynumber: 2.0 Consensus size: 67
20967459 GCTAAAAGTA
20967469 CAAAGCATAGAAAAAATTAACTTCAAAATTTTTCCCAAGGTTAAAGATATCAATGTCTTAATGTG
1 CAAAGCATAGAAAAAATTAACTTCAAAATTTTTCCCAAGGTTAAAGATATCAATGTCTTAATGTG
20967534 GT
66 GT
* * * *
20967536 CAAAGCATAGAAAAAATTAGCTTCAAAATTTTTCCCTATGTTAAAGATATCAATGTCTTATTGTG
1 CAAAGCATAGAAAAAATTAACTTCAAAATTTTTCCCAAGGTTAAAGATATCAATGTCTTAATGTG
20967601 GT
66 GT
20967603 GTAGTGCTAA
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 63 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (67 bp):
CAAAGCATAGAAAAAATTAACTTCAAAATTTTTCCCAAGGTTAAAGATATCAATGTCTTAATGTG
GT
Found at i:20967675 original size:19 final size:19
Alignment explanation
Indices: 20967647--20967739 Score: 64
Period size: 19 Copynumber: 4.8 Consensus size: 19
20967637 ACTTGGACAA
20967647 TATT-ATTATGTGGTGAAC
1 TATTAATTATGTGGTGAAC
* ** *
20967665 TATTAATTATGTTGTTTAG
1 TATTAATTATGTGGTGAAC
* * ** *
20967684 TACTAAATATGTACTTGGACAG
1 TATTAATTATGT-GGT-GA-AC
20967706 TATT-ATTATGTGGTGAAC
1 TATTAATTATGTGGTGAAC
20967724 TATTAATTATGTGGTG
1 TATTAATTATGTGGTG
20967740 TAGGATTAAA
Statistics
Matches: 55, Mismatches: 15, Indels: 9
0.70 0.19 0.11
Matches are distributed among these distances:
18 9 0.16
19 33 0.60
20 2 0.04
21 6 0.11
22 5 0.09
ACGTcount: A:0.29, C:0.05, G:0.20, T:0.45
Consensus pattern (19 bp):
TATTAATTATGTGGTGAAC
Found at i:20967718 original size:59 final size:59
Alignment explanation
Indices: 20967610--20967768 Score: 232
Period size: 59 Copynumber: 2.7 Consensus size: 59
20967600 GGTGTAGTGC
20967610 TAATTATGTGGTGTAGTAC--AATAATGCACTTGGACAATATTATTATGTGGTGAACTAT
1 TAATTATGTGGTGTAGTACTAAAT-ATGCACTTGGACAATATTATTATGTGGTGAACTAT
* * * *
20967668 TAATTATGTTGTTTAGTACTAAATATGTACTTGGACAGTATTATTATGTGGTGAACTAT
1 TAATTATGTGGTGTAGTACTAAATATGCACTTGGACAATATTATTATGTGGTGAACTAT
* * *
20967727 TAATTATGTGGTGTAGGATTAAATATGCACTTGAACAATATT
1 TAATTATGTGGTGTAGTACTAAATATGCACTTGGACAATATT
20967769 GTACTCATGT
Statistics
Matches: 88, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
58 17 0.19
59 68 0.77
60 3 0.03
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (59 bp):
TAATTATGTGGTGTAGTACTAAATATGCACTTGGACAATATTATTATGTGGTGAACTAT
Found at i:20967747 original size:19 final size:19
Alignment explanation
Indices: 20967710--20967753 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
20967700 GGACAGTATT
*
20967710 ATTATGTGGTGAACTATTA
1 ATTATGTGGTGAACGATTA
* *
20967729 ATTATGTGGTGTAGGATTA
1 ATTATGTGGTGAACGATTA
*
20967748 AATATG
1 ATTATG
20967754 CACTTGAACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.32, C:0.02, G:0.25, T:0.41
Consensus pattern (19 bp):
ATTATGTGGTGAACGATTA
Found at i:20967871 original size:3 final size:3
Alignment explanation
Indices: 20967857--20967973 Score: 105
Period size: 3 Copynumber: 38.7 Consensus size: 3
20967847 AAAACCTAAT
*
20967857 TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTCAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT--A
* * * * ** *
20967907 TCT- TTA TT- TTT TTG TT- TTT TTA TACA CAA TCA TTA TTA TTA TTA
1 T-TA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA
20967951 TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TT
20967974 CAATCTTTAT
Statistics
Matches: 97, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
2 5 0.05
3 88 0.91
4 1 0.01
5 2 0.02
6 1 0.01
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:20967945 original size:70 final size:70
Alignment explanation
Indices: 20967868--20968008 Score: 282
Period size: 70 Copynumber: 2.0 Consensus size: 70
20967858 TATTGTTATT
20967868 ATTATTATTATTATTATTATTATTATTATTATTATTCAATCTTTATTTTTTTGTTTTTTTATACA
1 ATTATTATTATTATTATTATTATTATTATTATTATTCAATCTTTATTTTTTTGTTTTTTTATACA
20967933 CAATC
66 CAATC
20967938 ATTATTATTATTATTATTATTATTATTATTATTATTCAATCTTTATTTTTTTGTTTTTTTATACA
1 ATTATTATTATTATTATTATTATTATTATTATTATTCAATCTTTATTTTTTTGTTTTTTTATACA
20968003 CAATC
66 CAATC
20968008 A
1 A
20968009 ATAATCATTT
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 71 1.00
ACGTcount: A:0.29, C:0.07, G:0.01, T:0.62
Consensus pattern (70 bp):
ATTATTATTATTATTATTATTATTATTATTATTATTCAATCTTTATTTTTTTGTTTTTTTATACA
CAATC
Found at i:20968538 original size:56 final size:56
Alignment explanation
Indices: 20968468--20968581 Score: 165
Period size: 56 Copynumber: 2.0 Consensus size: 56
20968458 CACAAACAAA
* ** *
20968468 CTACAACATTCTTAAAAATGCCTTGCTAATTTCATAACATTAGGAATATAGTTCCG
1 CTACAACATCCTTAAAAATGCCTTGCTAATTTCATAACACCAGGAATATAGTTACG
* * *
20968524 CTACAACATCCTTAAAAATGCTTTGCTAATTTTATAACACCAGGAATCTAGTTACG
1 CTACAACATCCTTAAAAATGCCTTGCTAATTTCATAACACCAGGAATATAGTTACG
20968580 CT
1 CT
20968582 GGCACGACAA
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
56 51 1.00
ACGTcount: A:0.35, C:0.21, G:0.11, T:0.33
Consensus pattern (56 bp):
CTACAACATCCTTAAAAATGCCTTGCTAATTTCATAACACCAGGAATATAGTTACG
Found at i:20972997 original size:11 final size:11
Alignment explanation
Indices: 20972983--20973009 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
20972973 GTTAGATATA
20972983 TATGGATGAGT
1 TATGGATGAGT
20972994 TATGGATGAGT
1 TATGGATGAGT
20973005 TATGG
1 TATGG
20973010 TCAAATATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.37, T:0.37
Consensus pattern (11 bp):
TATGGATGAGT
Found at i:20973690 original size:20 final size:21
Alignment explanation
Indices: 20973662--20973702 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
20973652 CCTGCAGTTC
* *
20973662 AAATTTTCCAACT-TTTTCTT
1 AAATGTTCCAAATGTTTTCTT
20973682 AAATGTTCCAAATGTTTTCTT
1 AAATGTTCCAAATGTTTTCTT
20973703 TTTGGCCCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.27, C:0.17, G:0.05, T:0.51
Consensus pattern (21 bp):
AAATGTTCCAAATGTTTTCTT
Found at i:20976118 original size:36 final size:34
Alignment explanation
Indices: 20976054--20976127 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 34
20976044 AGAATTGCGC
20976054 CCTACACTGGTCGGTAAAACTGAAAAATAGATGTG
1 CCTACACTGGTCGGTAAAACTGAAAAATAGAT-TG
* * *
20976089 CCTAGCACTGGTCGGTATAACT-ATCAAATAGGTTG
1 CCTA-CACTGGTCGGTAAAACTGA-AAAATAGATTG
20976124 CCTA
1 CCTA
20976128 ACAGTCCCCG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
35 11 0.32
36 23 0.68
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (34 bp):
CCTACACTGGTCGGTAAAACTGAAAAATAGATTG
Found at i:20977980 original size:4 final size:4
Alignment explanation
Indices: 20977971--20978006 Score: 72
Period size: 4 Copynumber: 9.0 Consensus size: 4
20977961 TGAATTTTGA
20977971 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
20978007 ATCATCTTTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTC
Found at i:20984875 original size:6 final size:6
Alignment explanation
Indices: 20984864--20984903 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
20984854 GGTTTTCTCA
*
20984864 AAATGG AAATGG AAATGG AAATGA AAATGAG AAAT-G AAAT
1 AAATGG AAATGG AAATGG AAATGG AAATG-G AAATGG AAAT
20984904 CTTTTAGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
5 5 0.16
6 22 0.71
7 4 0.13
ACGTcount: A:0.57, C:0.00, G:0.25, T:0.17
Consensus pattern (6 bp):
AAATGG
Found at i:20985544 original size:23 final size:23
Alignment explanation
Indices: 20985475--20985545 Score: 63
Period size: 25 Copynumber: 2.9 Consensus size: 23
20985465 GCTAAATAGT
20985475 AATAACATAATATTATACTAAAAAA
1 AATAACATAA-ATTA-ACTAAAAAA
* * *
20985500 AACCAA-ATAAAAATTAATTAAACAA
1 AA-TAACAT--AAATTAACTAAAAAA
20985525 AATAACATAAATTAACTAAAA
1 AATAACATAAATTAACTAAAA
20985546 TTAAAGAAAT
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
23 11 0.31
24 2 0.06
25 15 0.42
26 6 0.17
27 2 0.06
ACGTcount: A:0.66, C:0.10, G:0.00, T:0.24
Consensus pattern (23 bp):
AATAACATAAATTAACTAAAAAA
Found at i:20998875 original size:55 final size:54
Alignment explanation
Indices: 20998790--20998923 Score: 187
Period size: 55 Copynumber: 2.5 Consensus size: 54
20998780 TCGAGCTCCG
* * ** *
20998790 AAATACCCCTATAGGTTAAAATGATTGAAATACCCCTATAGGGTAAAATGACCA
1 AAATACCCCAATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCA
* * *
20998844 AAATACCCCCCATTGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCG
1 AAATA-CCCCAATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCA
20998899 AAATACCCCAATAGGGTAAAATGAC
1 AAATACCCCAATAGGGTAAAATGAC
20998924 TGTTATACCC
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
54 23 0.33
55 47 0.67
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.19
Consensus pattern (54 bp):
AAATACCCCAATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGACCA
Found at i:20998934 original size:27 final size:27
Alignment explanation
Indices: 20998787--20998923 Score: 193
Period size: 27 Copynumber: 5.0 Consensus size: 27
20998777 GAATCGAGCT
* *
20998787 CCGAAATACCCCTATAGGTTAAAATGA
1 CCGAAATACCCCCATAGGGTAAAATGA
** *
20998814 TTGAAATACCCCTATAGGGTAAAATGA
1 CCGAAATACCCCCATAGGGTAAAATGA
* *
20998841 CCAAAATACCCCCCATTGGGTAAAATGA
1 CCGAAATA-CCCCCATAGGGTAAAATGA
20998869 CCGAAATACCCCCATAGGGTAAAATGA
1 CCGAAATACCCCCATAGGGTAAAATGA
*
20998896 CCGAAATACCCCAATAGGGTAAAATGA
1 CCGAAATACCCCCATAGGGTAAAATGA
20998923 C
1 C
20998924 TGTTATACCC
Statistics
Matches: 98, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 74 0.76
28 24 0.24
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (27 bp):
CCGAAATACCCCCATAGGGTAAAATGA
Found at i:21001001 original size:26 final size:26
Alignment explanation
Indices: 21000972--21001027 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
21000962 AAGTGTAAGA
21000972 AAAGCAACAGTTTGTCGCGGCATTAC
1 AAAGCAACAGTTTGTCGCGGCATTAC
*
21000998 AAAGCAACAGTTTGTTGCGGCATTAC
1 AAAGCAACAGTTTGTCGCGGCATTAC
21001024 AAAG
1 AAAG
21001028 AAATGTTATG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (26 bp):
AAAGCAACAGTTTGTCGCGGCATTAC
Found at i:21002716 original size:340 final size:340
Alignment explanation
Indices: 21002096--21002775 Score: 1360
Period size: 340 Copynumber: 2.0 Consensus size: 340
21002086 AAATACTGCT
21002096 TTGTCTATAAGAAGTACAATTTTTCTTTATGATGTTCTATGATGAGCTTAAAATTTTTTAATATA
1 TTGTCTATAAGAAGTACAATTTTTCTTTATGATGTTCTATGATGAGCTTAAAATTTTTTAATATA
21002161 CCTAGGATAGGGTGAAGCTAGCTTAGGCTAAGTTGCTTAGAAATTGATTTCTAAAAGTGGGATGT
66 CCTAGGATAGGGTGAAGCTAGCTTAGGCTAAGTTGCTTAGAAATTGATTTCTAAAAGTGGGATGT
21002226 CCTATACTCTGTGTTTTTCTTGGTTTTTCGAAATATAGTATCTTTTTAATGCCCTTAGGGATTTT
131 CCTATACTCTGTGTTTTTCTTGGTTTTTCGAAATATAGTATCTTTTTAATGCCCTTAGGGATTTT
21002291 TGGAACCAAACATTAGTACATTGCCACGACATTCTGTTTAAATAAATATGCACTCCAATGCTTAG
196 TGGAACCAAACATTAGTACATTGCCACGACATTCTGTTTAAATAAATATGCACTCCAATGCTTAG
21002356 AGTTGCTAAGTAAGTCAACATAACTTTGTTTGCTCCATTGTGCTATTGATTAGAAAGGAGGACTT
261 AGTTGCTAAGTAAGTCAACATAACTTTGTTTGCTCCATTGTGCTATTGATTAGAAAGGAGGACTT
21002421 AAGTAAAAGTGTGTG
326 AAGTAAAAGTGTGTG
21002436 TTGTCTATAAGAAGTACAATTTTTCTTTATGATGTTCTATGATGAGCTTAAAATTTTTTAATATA
1 TTGTCTATAAGAAGTACAATTTTTCTTTATGATGTTCTATGATGAGCTTAAAATTTTTTAATATA
21002501 CCTAGGATAGGGTGAAGCTAGCTTAGGCTAAGTTGCTTAGAAATTGATTTCTAAAAGTGGGATGT
66 CCTAGGATAGGGTGAAGCTAGCTTAGGCTAAGTTGCTTAGAAATTGATTTCTAAAAGTGGGATGT
21002566 CCTATACTCTGTGTTTTTCTTGGTTTTTCGAAATATAGTATCTTTTTAATGCCCTTAGGGATTTT
131 CCTATACTCTGTGTTTTTCTTGGTTTTTCGAAATATAGTATCTTTTTAATGCCCTTAGGGATTTT
21002631 TGGAACCAAACATTAGTACATTGCCACGACATTCTGTTTAAATAAATATGCACTCCAATGCTTAG
196 TGGAACCAAACATTAGTACATTGCCACGACATTCTGTTTAAATAAATATGCACTCCAATGCTTAG
21002696 AGTTGCTAAGTAAGTCAACATAACTTTGTTTGCTCCATTGTGCTATTGATTAGAAAGGAGGACTT
261 AGTTGCTAAGTAAGTCAACATAACTTTGTTTGCTCCATTGTGCTATTGATTAGAAAGGAGGACTT
21002761 AAGTAAAAGTGTGTG
326 AAGTAAAAGTGTGTG
21002776 GTATAACTTT
Statistics
Matches: 340, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
340 340 1.00
ACGTcount: A:0.29, C:0.13, G:0.19, T:0.38
Consensus pattern (340 bp):
TTGTCTATAAGAAGTACAATTTTTCTTTATGATGTTCTATGATGAGCTTAAAATTTTTTAATATA
CCTAGGATAGGGTGAAGCTAGCTTAGGCTAAGTTGCTTAGAAATTGATTTCTAAAAGTGGGATGT
CCTATACTCTGTGTTTTTCTTGGTTTTTCGAAATATAGTATCTTTTTAATGCCCTTAGGGATTTT
TGGAACCAAACATTAGTACATTGCCACGACATTCTGTTTAAATAAATATGCACTCCAATGCTTAG
AGTTGCTAAGTAAGTCAACATAACTTTGTTTGCTCCATTGTGCTATTGATTAGAAAGGAGGACTT
AAGTAAAAGTGTGTG
Found at i:21003457 original size:20 final size:23
Alignment explanation
Indices: 21003432--21003472 Score: 61
Period size: 20 Copynumber: 1.9 Consensus size: 23
21003422 GTACTCAAGT
21003432 ACATTTT-GTT-GCA-TTTTAGG
1 ACATTTTAGTTAGCAGTTTTAGG
21003452 ACATTTTAGTTAGCAGTTTTA
1 ACATTTTAGTTAGCAGTTTTA
21003473 ATATTGCATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 3 0.17
22 3 0.17
23 5 0.28
ACGTcount: A:0.24, C:0.10, G:0.17, T:0.49
Consensus pattern (23 bp):
ACATTTTAGTTAGCAGTTTTAGG
Found at i:21014818 original size:17 final size:17
Alignment explanation
Indices: 21014796--21014840 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
21014786 GAGCGAGATG
21014796 AAGTGAAAAAGATCA-AA
1 AAGTGAAAAAG-TCACAA
*
21014813 AAGTGACAAAGTCACAA
1 AAGTGAAAAAGTCACAA
21014830 AAGTAGAAAAA
1 AAGT-GAAAAA
21014841 CTCAGTCATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 3 0.12
17 16 0.67
18 5 0.21
ACGTcount: A:0.62, C:0.09, G:0.18, T:0.11
Consensus pattern (17 bp):
AAGTGAAAAAGTCACAA
Found at i:21024022 original size:137 final size:136
Alignment explanation
Indices: 21023772--21024029 Score: 317
Period size: 137 Copynumber: 1.9 Consensus size: 136
21023762 ACTCGAGCCA
* *
21023772 TAAATGGGTCTGCTCACACAAGCTGATAGTCGAAATGTAGCTACACGATGCCACTCACACAACTT
1 TAAATGGGTCTACTCACACAAGCTGACAGTCGAAATGTAGCTACACGATGCCACTCACACAACTT
* *
21023837 GAAGAGTATCCACAACAAATGTCAAAACTCAGCCATTGATAGGACATTCAGGACCAGCACCTTGA
66 GAAGAGTATCCACAACAAATGCCAAAACTCAGCCATAGATAGGACATTCAGGACCAGCACCTTGA
21023902 ACATGG
131 ACATGG
* * **
21023908 TAAACTGGGTCTACTCACACAAGCTGACGGTC-AGAATGTAAGCTACGC-ATGCTGCTCACACAA
1 TAAA-TGGGTCTACTCACACAAGCTGACAGTCGA-AATGT-AGCTACACGATGCCACTCACACAA
* * * ** *
21023971 GTTGACGAGTATCTGA-AACAAATGCCTGACCTCAGCCATCAG-TAGGACATTCAGGACCA
63 CTTGAAGAGTATC-CACAACAAATGCCAAAACTCAGCCAT-AGATAGGACATTCAGGACCA
21024030 ACAGCTAGAA
Statistics
Matches: 103, Mismatches: 14, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
136 5 0.05
137 89 0.86
138 9 0.09
ACGTcount: A:0.34, C:0.26, G:0.20, T:0.21
Consensus pattern (136 bp):
TAAATGGGTCTACTCACACAAGCTGACAGTCGAAATGTAGCTACACGATGCCACTCACACAACTT
GAAGAGTATCCACAACAAATGCCAAAACTCAGCCATAGATAGGACATTCAGGACCAGCACCTTGA
ACATGG
Found at i:21026255 original size:20 final size:20
Alignment explanation
Indices: 21026222--21026259 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
21026212 AATTAAGGTT
21026222 AAATTGTAATTTAATAATTA
1 AAATTGTAATTTAATAATTA
21026242 AAATT-TAATCTTAATAAT
1 AAATTGTAAT-TTAATAAT
21026260 AATATGTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (20 bp):
AAATTGTAATTTAATAATTA
Found at i:21031903 original size:42 final size:42
Alignment explanation
Indices: 21031847--21031946 Score: 164
Period size: 42 Copynumber: 2.4 Consensus size: 42
21031837 CTATATGAAC
*
21031847 GGCACTAAGTGTGCGAAACTAAAATGACGATGCTGAATAATG
1 GGCACTAAGTGTGCGAAACTAAAATGACGATGCTGAATAACG
* * *
21031889 GGCACTAAGTGTGCGAAATTAAAATGATGATGTTGAATAACG
1 GGCACTAAGTGTGCGAAACTAAAATGACGATGCTGAATAACG
21031931 GGCACTAAGTGTGCGA
1 GGCACTAAGTGTGCGA
21031947 TACCGAGAGC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.36, C:0.13, G:0.28, T:0.23
Consensus pattern (42 bp):
GGCACTAAGTGTGCGAAACTAAAATGACGATGCTGAATAACG
Found at i:21046167 original size:100 final size:100
Alignment explanation
Indices: 21045994--21046193 Score: 346
Period size: 100 Copynumber: 2.0 Consensus size: 100
21045984 AAAGAAAGTG
* *
21045994 TGCCTGTATCATATTAAATTATTATACCTCCTAGGATTTTGCCTCAAGAAAGTTACTAAGTCAAT
1 TGCCTATATCATATTAAATTATTATACCTCCTAGGATTTTGCCTCAAGAAAGTTAATAAGTCAAT
*
21046059 TTTAAAGACTTAAACCTTCGTACATGTCTATTTCT
66 TTTAAAGACTTAAACCTTCATACATGTCTATTTCT
*
21046094 TGCCTATATCATATTAAATTCTTATACCTCCTAGGATTTTGCCTCAAGAAAGTTAATAAGTCAAT
1 TGCCTATATCATATTAAATTATTATACCTCCTAGGATTTTGCCTCAAGAAAGTTAATAAGTCAAT
**
21046159 TTTAAAGACTTAAACCTTCATGTATGTCTATTTCT
66 TTTAAAGACTTAAACCTTCATACATGTCTATTTCT
21046194 AAAGAAAATG
Statistics
Matches: 94, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 94 1.00
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.40
Consensus pattern (100 bp):
TGCCTATATCATATTAAATTATTATACCTCCTAGGATTTTGCCTCAAGAAAGTTAATAAGTCAAT
TTTAAAGACTTAAACCTTCATACATGTCTATTTCT
Found at i:21055988 original size:23 final size:23
Alignment explanation
Indices: 21055962--21056012 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
21055952 ACCTACTTTC
* *
21055962 TTACTGTAGTAATTTTCGGGGTA
1 TTACAGTAGTAATTTTCGGGATA
21055985 TTACAGTAGTAATTTTCGGGATA
1 TTACAGTAGTAATTTTCGGGATA
21056008 TTACA
1 TTACA
21056013 TTTCTCTCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.10, G:0.22, T:0.41
Consensus pattern (23 bp):
TTACAGTAGTAATTTTCGGGATA
Found at i:21057634 original size:50 final size:50
Alignment explanation
Indices: 21057543--21057774 Score: 159
Period size: 50 Copynumber: 4.6 Consensus size: 50
21057533 TCCTATACTA
* * * **
21057543 CCAATGTCATATCCCAGATATGGTCTTACATGGGGGT-TCTCATATCGGTGT
1 CCAATGCCATGTCCCAGACATGGTCTTACA--GGGGTCTCTCATATCAATGT
* * ** *
21057594 CC-ATGTCATGTCCCAGACATGGTCTTACGGGGGATCTCTCATCCCAGTG-
1 CCAATGCCATGTCCCAGACATGGTCTTACAGGGG-TCTCTCATATCAATGT
* * **
21057643 CCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATAATCTCAATGAT
1 CCAATGCCATGTCCCAGACATGGTCTTACA-GGGGTCTCTCAT-A--TCAATG-T
* ** * *
21057698 GCCAACGCCATGTCCCAGACATGGTCTTACATTGG-CTCACATATCGATGT
1 -CCAATGCCATGTCCCAGACATGGTCTTACAGGGGTCTCTCATATCAATGT
* *
21057748 -CGATGCCATGTCCCAAACATGGTCTTA
1 CCAATGCCATGTCCCAGACATGGTCTTA
21057775 TACGAGATTG
Statistics
Matches: 147, Mismatches: 24, Indels: 23
0.76 0.12 0.12
Matches are distributed among these distances:
48 28 0.19
49 3 0.02
50 65 0.44
51 10 0.07
53 5 0.03
54 6 0.04
55 1 0.01
56 29 0.20
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACAGGGGTCTCTCATATCAATGT
Found at i:21060041 original size:20 final size:20
Alignment explanation
Indices: 21060016--21060054 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
21060006 GAAAACTTAT
21060016 ATAAGATCTTATATAAGAAC
1 ATAAGATCTTATATAAGAAC
21060036 ATAAGATCTTATATAAGAA
1 ATAAGATCTTATATAAGAA
21060055 AACTCTACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.08, G:0.10, T:0.31
Consensus pattern (20 bp):
ATAAGATCTTATATAAGAAC
Found at i:21060047 original size:108 final size:109
Alignment explanation
Indices: 21059916--21060122 Score: 380
Period size: 108 Copynumber: 1.9 Consensus size: 109
21059906 TCTTCACTAA
*
21059916 TATATCAAGAACATAATATCTTATATAAGAAAACTCTACTATAACATTATTTCCTTACTTTTTCA
1 TATATCAAGAACATAAGATCTTATATAAGAAAACTCTACTATAACATTATTTCCTTACTTTTTCA
21059981 ATAACATCAAACTTAAAAATATATTGAAAACTTATATAAGATCT
66 ATAACATCAAACTTAAAAATATATTGAAAACTTATATAAGATCT
21060025 TATAT-AAGAACATAAGATCTTATATAAGAAAACTCTACTATAACATTATTTCCTTACTTTTTCA
1 TATATCAAGAACATAAGATCTTATATAAGAAAACTCTACTATAACATTATTTCCTTACTTTTTCA
* *
21060089 ATAATATCAAACTTAAAAATATATTGAAATCTTA
66 ATAACATCAAACTTAAAAATATATTGAAAACTTA
21060123 ATGTTCTTAC
Statistics
Matches: 95, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
108 90 0.95
109 5 0.05
ACGTcount: A:0.45, C:0.14, G:0.04, T:0.37
Consensus pattern (109 bp):
TATATCAAGAACATAAGATCTTATATAAGAAAACTCTACTATAACATTATTTCCTTACTTTTTCA
ATAACATCAAACTTAAAAATATATTGAAAACTTATATAAGATCT
Found at i:21060936 original size:23 final size:23
Alignment explanation
Indices: 21060909--21060958 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
21060899 ACCTACTTTC
* *
21060909 TTACTGTAGTAATTTTCGGGGTA
1 TTACTGTAGTAATTTTCGAGATA
21060932 TTACTGTAGTAATTTTCGAGATA
1 TTACTGTAGTAATTTTCGAGATA
21060955 TTAC
1 TTAC
21060959 ACAAACAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.26, C:0.10, G:0.20, T:0.44
Consensus pattern (23 bp):
TTACTGTAGTAATTTTCGAGATA
Found at i:21062229 original size:43 final size:42
Alignment explanation
Indices: 21062149--21062230 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 42
21062139 AATCATATAT
**
21062149 GATGCCAATGTCCCAACATGGTCTTACACAGTTTCACACTTC
1 GATGCCAATGTCCCAACATGGTCTTACACAGAATCACACTTC
*
21062191 GATGTCAATGTCCCAGACATGGTCTTACAC-GAAATCACAC
1 GATGCCAATGTCCCA-ACATGGTCTTACACAG-AATCACAC
21062231 CTCGGAAGTC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
42 15 0.43
43 20 0.57
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (42 bp):
GATGCCAATGTCCCAACATGGTCTTACACAGAATCACACTTC
Found at i:21062490 original size:31 final size:31
Alignment explanation
Indices: 21062362--21062489 Score: 175
Period size: 31 Copynumber: 4.1 Consensus size: 31
21062352 TTCAACAATA
*
21062362 TATATCCATATACGAATCAAATTCGGTAATG
1 TATATCCATATACAAATCAAATTCGGTAATG
* * *
21062393 TATATCTATATACAGATCAAATTCGGCAATG
1 TATATCCATATACAAATCAAATTCGGTAATG
* *
21062424 AATATCCATATACAAATCAAATTCGGTGATG
1 TATATCCATATACAAATCAAATTCGGTAATG
* **
21062455 TATAACCATATACAAATCAAATTTAGTAATG
1 TATATCCATATACAAATCAAATTCGGTAATG
21062486 TATA
1 TATA
21062490 AAACATATAC
Statistics
Matches: 83, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 83 1.00
ACGTcount: A:0.42, C:0.15, G:0.11, T:0.32
Consensus pattern (31 bp):
TATATCCATATACAAATCAAATTCGGTAATG
Found at i:21064858 original size:40 final size:40
Alignment explanation
Indices: 21064793--21065140 Score: 351
Period size: 40 Copynumber: 8.8 Consensus size: 40
21064783 AATTATTGTA
* * * * *
21064793 TGAATGCACATGCGTACCCCTGTTTGTACTTCGGCACCCT
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * * * * *
21064833 TGATTACACATACATGCCTCAGTTTGCACTTCGGT-CTCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * *
21064872 TGAATGCACATACGCT-CCCCTATTTGTACTTCGATACCCC
1 TGAATGCACATAC-ATGCCCCTGTTTGTACTTCGGTACCCC
* * * * *
21064912 TGATTGCACATACATTCCCCTGTTTGTACTTTGATACCCG
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* *
21064952 TGAATGCACATACGTGCCCCTGTTTGTACTTTGGTACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * * * * * *
21064992 TGATTGCATATTCGTGCCTCTGTTTGTACTTTGGTACCCT
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * *
21065032 TGATTGCACATTCATGCCCCTGTTTATACTTCGGTACCCC
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* *
21065072 TGAATGCACATACATGCCCCTGTTTATACTTCGGTACCCT
1 TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
* *
21065112 TGAATGCACTTACGTG-CCCTGTTTGTACT
1 TGAATGCACATACATGCCCCTGTTTGTACT
21065141 CTGGTAACTC
Statistics
Matches: 258, Mismatches: 47, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
39 40 0.16
40 218 0.84
ACGTcount: A:0.19, C:0.30, G:0.17, T:0.35
Consensus pattern (40 bp):
TGAATGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
Found at i:21064990 original size:80 final size:80
Alignment explanation
Indices: 21064793--21065140 Score: 407
Period size: 80 Copynumber: 4.4 Consensus size: 80
21064783 AATTATTGTA
* * * * * * *
21064793 TGAATGCACATGCGTACCCCTGTTTGTACTTCGGCACCCTTGATTACACATACATGCCTCAGTTT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACATGCCCCTGTTT
*
21064858 GCACTTCGGT-CTCC-
66 GTACTTCGGTAC-CCT
* * *
21064872 TGAATGCACATACGCT-CCCCTATTTGTACTTCGATACCCCTGATTGCACATACATTCCCCTGTT
1 TGAATGCACATACG-TGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACATGCCCCTGTT
* * *
21064936 TGTACTTTGATACCCG
65 TGTACTTCGGTACCCT
* * * * *
21064952 TGAATGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTGATTGCATATTCGTGCCTCTGTTT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACATGCCCCTGTTT
*
21065017 GTACTTTGGTACCCT
66 GTACTTCGGTACCCT
* * * * *
21065032 TGATTGCACATTCATGCCCCTGTTTATACTTCGGTACCCCTGAATGCACATACATGCCCCTGTTT
1 TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACATGCCCCTGTTT
*
21065097 ATACTTCGGTACCCT
66 GTACTTCGGTACCCT
*
21065112 TGAATGCACTTACGTG-CCCTGTTTGTACT
1 TGAATGCACATACGTGCCCCTGTTTGTACT
21065141 CTGGTAACTC
Statistics
Matches: 226, Mismatches: 39, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
79 76 0.34
80 150 0.66
ACGTcount: A:0.19, C:0.30, G:0.17, T:0.35
Consensus pattern (80 bp):
TGAATGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTGATTGCACATACATGCCCCTGTTT
GTACTTCGGTACCCT
Found at i:21064993 original size:20 final size:20
Alignment explanation
Indices: 21064968--21065073 Score: 70
Period size: 20 Copynumber: 5.3 Consensus size: 20
21064958 CACATACGTG
21064968 CCCCTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTTGGTA
* * * *
21064988 CCCCTGATTGCA-TATTCGTG
1 CCCCTGTTTGTACT-TTGGTA
*
21065008 CCTCTGTTTGTACTTTGGTA
1 CCCCTGTTTGTACTTTGGTA
* * * * ** *
21065028 CCCTTGATTGCACATTCATG
1 CCCCTGTTTGTACTTTGGTA
* *
21065048 CCCCTGTTTATACTTCGGTA
1 CCCCTGTTTGTACTTTGGTA
21065068 CCCCTG
1 CCCCTG
21065074 AATGCACATA
Statistics
Matches: 58, Mismatches: 26, Indels: 4
0.66 0.30 0.05
Matches are distributed among these distances:
19 1 0.02
20 56 0.97
21 1 0.02
ACGTcount: A:0.13, C:0.29, G:0.18, T:0.40
Consensus pattern (20 bp):
CCCCTGTTTGTACTTTGGTA
Found at i:21072676 original size:60 final size:60
Alignment explanation
Indices: 21072609--21072947 Score: 258
Period size: 60 Copynumber: 5.7 Consensus size: 60
21072599 TCATTGTCCA
** * * * *
21072609 ATGAAAAGGTTTGGCTTCAGCTATCAAAATATGGAAAGGGATAGCTTTGGCTATTGAATT
1 ATGAAAAGGGATGGCTTCAGCTATCAAAATATGAAAAGGGATGGCTTCGGCTATCGAATT
* * * * * * * *
21072669 ATGAAAAGGGATGG-TGACAACCATC-GAATCATTAACAGAGATGGCTTCAGCTATCGAATT
1 ATGAAAAGGGATGGCT-TCAGCTATCAAAAT-ATGAAAAGGGATGGCTTCGGCTATCGAATT
* * * *
21072729 ATGAAAAGGGATGGCTTCGGTTATCAAATTATGAAAAGGGACGGCTTCGGCTATCGAATT
1 ATGAAAAGGGATGGCTTCAGCTATCAAAATATGAAAAGGGATGGCTTCGGCTATCGAATT
* * * * * * **
21072789 ATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAAAGGGATGG-TGACGACCATC-AACA
1 ATGAAAAGGGATGGCTTCAGCTATCAAAATATGAAAAGGGATGGCT-TCGGCTATCGAATT
* * * * * *
21072848 ATGAAAAGGGATGG--TGATGACCATCGAATTATGAAAAGGGATGGCTTCGGCTATCAAAAT
1 ATGAAAAGGGATGGCTTCA-G-CTATCAAAATATGAAAAGGGATGGCTTCGGCTATCGAATT
* * ** *
21072908 ATGGAAAGGGATAGCTTCAGCTATTGAACTATGAAAAGGG
1 ATGAAAAGGGATGGCTTCAGCTATCAAAATATGAAAAGGG
21072948 GTGGTAACAA
Statistics
Matches: 218, Mismatches: 50, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
57 1 0.00
58 1 0.00
59 48 0.22
60 162 0.74
61 4 0.02
62 2 0.01
ACGTcount: A:0.36, C:0.13, G:0.27, T:0.25
Consensus pattern (60 bp):
ATGAAAAGGGATGGCTTCAGCTATCAAAATATGAAAAGGGATGGCTTCGGCTATCGAATT
Found at i:21072725 original size:30 final size:30
Alignment explanation
Indices: 21072708--21072947 Score: 245
Period size: 30 Copynumber: 8.0 Consensus size: 30
21072698 CATTAACAGA
*
21072708 GATGGCTTCAGCTATCGAATTATGAAAAGG
1 GATGGCTTCGGCTATCGAATTATGAAAAGG
* *
21072738 GATGGCTTCGGTTATCAAATTATGAAAAGG
1 GATGGCTTCGGCTATCGAATTATGAAAAGG
*
21072768 GACGGCTTCGGCTATCGAATTATGAAAAGG
1 GATGGCTTCGGCTATCGAATTATGAAAAGG
* *
21072798 GATAGCTTCGGCTATCAAATTATGAAAAGG
1 GATGGCTTCGGCTATCGAATTATGAAAAGG
* * * **
21072828 GATGG-TGACGACCATC-AACAATGAAAAGG
1 GATGGCT-TCGGCTATCGAATTATGAAAAGG
* *
21072857 GATGG-TGAT-GACCATCGAATTATGAAAAGG
1 GATGGCT--TCGGCTATCGAATTATGAAAAGG
* * *
21072887 GATGGCTTCGGCTATCAAAATATGGAAAGG
1 GATGGCTTCGGCTATCGAATTATGAAAAGG
* * * *
21072917 GATAGCTTCAGCTATTGAACTATGAAAAGG
1 GATGGCTTCGGCTATCGAATTATGAAAAGG
21072947 G
1 G
21072948 GTGGTAACAA
Statistics
Matches: 175, Mismatches: 30, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
29 26 0.15
30 148 0.85
31 1 0.01
ACGTcount: A:0.35, C:0.13, G:0.28, T:0.24
Consensus pattern (30 bp):
GATGGCTTCGGCTATCGAATTATGAAAAGG
Found at i:21072785 original size:90 final size:90
Alignment explanation
Indices: 21072620--21072947 Score: 286
Period size: 90 Copynumber: 3.7 Consensus size: 90
21072610 TGAAAAGGTT
* * * * ** *
21072620 TGGCTTCAGCTATCAAAATATGGAAAGGGATAGCTTTGGCTATTGAATTATGAAAAGGGATGGTG
1 TGGCTTCAGCTATCAAATTATGAAAAGGGATGGCTTCGGCTATCAAATTATGAAAAGGGACGGTG
* *
21072685 ACAACCATCGAATCATTAACAGAGA
66 ACAACCATCGAATCATGAAAAGAGA
* *
21072710 TGGCTTCAGCTATCGAATTATGAAAAGGGATGGCTTCGGTTATCAAATTATGAAAAGGGACGGCT
1 TGGCTTCAGCTATCAAATTATGAAAAGGGATGGCTTCGGCTATCAAATTATGAAAAGGGACGG-T
* ** * * *
21072775 -TCGGCTATCGAATTATGAAAAGGGA
65 GACAACCATCGAATCATGAAAAGAGA
* * * * * *
21072800 TAGCTTCGGCTATCAAATTATGAAAAGGGATGG-TGACGACCATCAACA--ATGAAAAGGGATGG
1 TGGCTTCAGCTATCAAATTATGAAAAGGGATGGCT-TCGGCTATCAA-ATTATGAAAAGGGACGG
** * *
21072862 TGATGACCATCGAATTATGAAAAGGGA
64 TGACAACCATCGAATCATGAAAAGAGA
* * * * * ** *
21072889 TGGCTTCGGCTATCAAAATATGGAAAGGGATAGCTTCAGCTATTGAACTATGAAAAGGG
1 TGGCTTCAGCTATCAAATTATGAAAAGGGATGGCTTCGGCTATCAAATTATGAAAAGGG
21072948 GTGGTAACAA
Statistics
Matches: 192, Mismatches: 39, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
88 2 0.01
89 69 0.36
90 119 0.62
91 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.25
Consensus pattern (90 bp):
TGGCTTCAGCTATCAAATTATGAAAAGGGATGGCTTCGGCTATCAAATTATGAAAAGGGACGGTG
ACAACCATCGAATCATGAAAAGAGA
Found at i:21072860 original size:29 final size:30
Alignment explanation
Indices: 21072819--21072891 Score: 112
Period size: 29 Copynumber: 2.5 Consensus size: 30
21072809 CTATCAAATT
21072819 ATGAAAAGGGATGGTGACGACCATC-AACA
1 ATGAAAAGGGATGGTGACGACCATCGAACA
* **
21072848 ATGAAAAGGGATGGTGATGACCATCGAATT
1 ATGAAAAGGGATGGTGACGACCATCGAACA
21072878 ATGAAAAGGGATGG
1 ATGAAAAGGGATGG
21072892 CTTCGGCTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
29 24 0.60
30 16 0.40
ACGTcount: A:0.40, C:0.11, G:0.32, T:0.18
Consensus pattern (30 bp):
ATGAAAAGGGATGGTGACGACCATCGAACA
Found at i:21075140 original size:41 final size:42
Alignment explanation
Indices: 21074973--21075158 Score: 202
Period size: 41 Copynumber: 4.5 Consensus size: 42
21074963 TGTAAATAGG
*
21074973 GGCACATATGTGCAATTCAGGGGTA-CTAAAGTACAAA-ATG-
1 GGCACATATGTGCAATTCAGGGGTATCTGAAGTACAAACA-GA
* * * *
21075013 GGAACATATGTGCAATTCAAGGGTATC-GAAGTACAAATAGG
1 GGCACATATGTGCAATTCAGGGGTATCTGAAGTACAAACAGA
* *
21075054 GGCACATTTGTGCAATTCAGGGGTTTCTGAAGTACAAACAGA
1 GGCACATATGTGCAATTCAGGGGTATCTGAAGTACAAACAGA
** *
21075096 GGCATGTATGTGCAATTCAGGGGTATC-GAAGTACAAACACA
1 GGCACATATGTGCAATTCAGGGGTATCTGAAGTACAAACAGA
** * *
21075137 GGCATGTATGTGGAATTTAGGG
1 GGCACATATGTGCAATTCAGGG
21075159 AATAATTGAG
Statistics
Matches: 126, Mismatches: 16, Indels: 7
0.85 0.11 0.05
Matches are distributed among these distances:
40 33 0.26
41 58 0.46
42 35 0.28
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (42 bp):
GGCACATATGTGCAATTCAGGGGTATCTGAAGTACAAACAGA
Found at i:21076760 original size:107 final size:109
Alignment explanation
Indices: 21076553--21076770 Score: 350
Period size: 107 Copynumber: 2.0 Consensus size: 109
21076543 GGCTCACACT
* **
21076553 ATCCGTCTAAACTGGTTGTTTTTGTATCTCTTAGGGTAGTGGCGTGTATATATATATATTTATAT
1 ATCCGTCTAAACTGGTTGTTTTTGTATCGCTTAAAGTAGTGGCGTGTATATATATATATTTATAT
* * *
21076618 ATATGAATTTGTGGTTGAAATTCTTAGGATGTTATGTAATGGTG
66 AGATGAATTTGTAGTTGAAATGCTTAGGATGTTATGTAATGGTG
*
21076662 ATCCGTCTAAACTGGTTGTTTTTGTATCGCTTAAAGTAGTGGC-T-TGTATATATATATTTATAT
1 ATCCGTCTAAACTGGTTGTTTTTGTATCGCTTAAAGTAGTGGCGTGTATATATATATATTTATAT
*
21076725 AGATGAATTTGTAGTTGAAATGCTTAGGGTGTTATGTAATGGTG
66 AGATGAATTTGTAGTTGAAATGCTTAGGATGTTATGTAATGGTG
21076769 AT
1 AT
21076771 TTGGATGTTT
Statistics
Matches: 101, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
107 60 0.59
108 1 0.01
109 40 0.40
ACGTcount: A:0.26, C:0.07, G:0.23, T:0.44
Consensus pattern (109 bp):
ATCCGTCTAAACTGGTTGTTTTTGTATCGCTTAAAGTAGTGGCGTGTATATATATATATTTATAT
AGATGAATTTGTAGTTGAAATGCTTAGGATGTTATGTAATGGTG
Found at i:21082854 original size:50 final size:50
Alignment explanation
Indices: 21082743--21082975 Score: 225
Period size: 50 Copynumber: 4.5 Consensus size: 50
21082733 AAAGAGATCT
* * * * *
21082743 CATGTAAGACCATGTCTGGGACATGGCATTGACATCATTGAGATTATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCGTGGGCA-C--CGAG---ATGAAAGGTCC
* * * * *
21082799 TATGTAATACCCTGTCTGGGACATGGTGTGGGAACCGAGATGAAAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCGTGGGCACCGAGATGAAAGGTCC
* *
21082849 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCGTGGGCACCGAGATGAAAGGTCC
** * * *
21082899 CCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAA-CTCC
1 CATGTAAGACCATGTCTGGGACATGGCGTGGGCACCGAGATGA-AAGGTCC
* *
21082949 CATGTAAGACCATATCTGGGATATGGC
1 CATGTAAGACCATGTCTGGGACATGGC
21082976 ATTGGAATTA
Statistics
Matches: 148, Mismatches: 28, Indels: 8
0.80 0.15 0.04
Matches are distributed among these distances:
50 117 0.79
51 1 0.01
53 3 0.02
55 1 0.01
56 26 0.18
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCGTGGGCACCGAGATGAAAGGTCC
Found at i:21082936 original size:100 final size:103
Alignment explanation
Indices: 21082743--21082980 Score: 277
Period size: 100 Copynumber: 2.3 Consensus size: 103
21082733 AAAGAGATCT
* * * * *
21082743 CATGTAAGACCATGTCTGGGACATGGCATTGACATCATTGAGATTATGAGAGGTCCTATGTAATA
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCA-CGAG--TATGAGAGGTCCCACGTAAGA
* ** *
21082808 CCCTGTCTGGGACATGGTGTGGGAACCGAGATGA-AAGGTCC
63 CCATGTCTGGGACATGGCATGGGAACCGAGATGAGAA-CTCC
* *
21082849 CATGTAAGACCATGTCTGGGACATGGCGTTGGCA-C-CGAG-ATGAGAGGTCCCCCGTAAGACCA
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCACGAGTATGAGAGGTCCCACGTAAGACCA
* *
21082911 TGTCTGGGACATGGCATGGGCACCGATATGAGAACTCC
66 TGTCTGGGACATGGCATGGGAACCGAGATGAGAACTCC
* *
21082949 CATGTAAGACCATATCTGGGATATGGCATTGG
1 CATGTAAGACCATGTCTGGGACATGGCATTGG
21082981 AATTACAGAA
Statistics
Matches: 115, Mismatches: 16, Indels: 8
0.83 0.12 0.06
Matches are distributed among these distances:
100 77 0.67
101 2 0.02
103 3 0.03
105 1 0.01
106 32 0.28
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (103 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCATCACGAGTATGAGAGGTCCCACGTAAGACCA
TGTCTGGGACATGGCATGGGAACCGAGATGAGAACTCC
Done.