Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 77 of 145
Found at i:25538572 original size:23 final size:22
Alignment explanation
Indices: 25538529--25538572 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
25538519 TTCTAAGTTG
25538529 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
25538552 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
25538573 TTAGTCAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:25538689 original size:45 final size:45
Alignment explanation
Indices: 25538620--25538705 Score: 136
Period size: 45 Copynumber: 1.9 Consensus size: 45
25538610 AGATACTCAT
* *
25538620 TGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTCCAG
1 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCCAG
**
25538665 TGGAATCAGCACATATTAACCACCTTACTAATCAATGATGT
1 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
25538706 TCGGTTCACA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (45 bp):
TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCCAG
Found at i:25542395 original size:39 final size:39
Alignment explanation
Indices: 25542341--25542421 Score: 144
Period size: 39 Copynumber: 2.1 Consensus size: 39
25542331 GAAAATAAGA
*
25542341 CGAATAACACGAGTAAGATTTTATAAAGTTTAGTAAGTT
1 CGAATAACACGAGTAAGATTTTATAAAGCTTAGTAAGTT
*
25542380 CGAATAACACGAGTAAGCTTTTATAAAGCTTAGTAAGTT
1 CGAATAACACGAGTAAGATTTTATAAAGCTTAGTAAGTT
25542419 CGA
1 CGA
25542422 TGATTAAAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.40, C:0.11, G:0.19, T:0.31
Consensus pattern (39 bp):
CGAATAACACGAGTAAGATTTTATAAAGCTTAGTAAGTT
Found at i:25544614 original size:23 final size:24
Alignment explanation
Indices: 25544574--25544620 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
25544564 TGATTCTGTG
25544574 ATGGGCTAAAGCCCTACTGCATAT
1 ATGGGCTAAAGCCCTACTGCATAT
*
25544598 ATGGGCT-ACGCCCTACTGCATAT
1 ATGGGCTAAAGCCCTACTGCATAT
25544621 TTGATACTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 15 0.68
24 7 0.32
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (24 bp):
ATGGGCTAAAGCCCTACTGCATAT
Found at i:25551054 original size:40 final size:41
Alignment explanation
Indices: 25550966--25551146 Score: 240
Period size: 41 Copynumber: 4.5 Consensus size: 41
25550956 CAAACTGATT
* * * *
25550966 CTGTGATGGGCTAAGGCCCTACTGCGTATTTGAAACTAATT
1 CTGTGATGGGCTAAGACCCTACTGCATATTTGATACTAATA
* * * *
25551007 CTATGATGGGCTAAGGCCCTA-TGGATATTTGATACTGATA
1 CTGTGATGGGCTAAGACCCTACTGCATATTTGATACTAATA
*
25551047 CTGTGATGGGCTAAGACCCTACTGCAGATTTGATACTAATA
1 CTGTGATGGGCTAAGACCCTACTGCATATTTGATACTAATA
* *
25551088 CTATGATGGGCTAAGACCCTACTACATATTTGATACT-ATA
1 CTGTGATGGGCTAAGACCCTACTGCATATTTGATACTAATA
*
25551128 CTGAGATGGGCTAAGACCC
1 CTGTGATGGGCTAAGACCC
25551147 AAATTGTTAC
Statistics
Matches: 123, Mismatches: 16, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
40 53 0.43
41 70 0.57
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (41 bp):
CTGTGATGGGCTAAGACCCTACTGCATATTTGATACTAATA
Found at i:25551094 original size:81 final size:82
Alignment explanation
Indices: 25550959--25551146 Score: 274
Period size: 81 Copynumber: 2.3 Consensus size: 82
25550949 TAAGGCCCAA
* * * *
25550959 ACTGATTCTGTGATGGGCTAAGGCCCTACTGCGTATTTGAAACTAATTCTATGATGGGCTAAGGC
1 ACTGATACTGTGATGGGCTAAGACCCTACTGCGTATTTGAAACTAATACTATGATGGGCTAAGAC
**
25551024 CCTA-TGGATATTTGAT
66 CCTACTACATATTTGAT
*
25551040 ACTGATACTGTGATGGGCTAAGACCCTACTGCAG-ATTTGATACTAATACTATGATGGGCTAAGA
1 ACTGATACTGTGATGGGCTAAGACCCTACTGC-GTATTTGAAACTAATACTATGATGGGCTAAGA
25551104 CCCTACTACATATTTGAT
65 CCCTACTACATATTTGAT
*
25551122 ACT-ATACTGAGATGGGCTAAGACCC
1 ACTGATACTGTGATGGGCTAAGACCC
25551147 AAATTGTTAC
Statistics
Matches: 97, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
81 83 0.86
82 14 0.14
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30
Consensus pattern (82 bp):
ACTGATACTGTGATGGGCTAAGACCCTACTGCGTATTTGAAACTAATACTATGATGGGCTAAGAC
CCTACTACATATTTGAT
Found at i:25558304 original size:113 final size:113
Alignment explanation
Indices: 25558187--25558410 Score: 421
Period size: 113 Copynumber: 2.0 Consensus size: 113
25558177 AAAATATATG
*
25558187 TGAATATTCAGATAATATGAGTTTATTTTAAAATAGCTAATTTACATGTTATAGGTTCAGGGACT
1 TGAATATTCAAATAATATGAGTTTATTTTAAAATAGCTAATTTACATGTTATAGGTTCAGGGACT
*
25558252 AAATTGAATAAAAGTAAATTTTTAGGGTCATTTTGTAAAATGTCAATA
66 AAATTGAATAAAAGTAAATTTTTAGGGTAATTTTGTAAAATGTCAATA
25558300 TGAATATTCAAATAATATGAGTTTATTTTAAAATAGCTAATTTACATGTTATAGGTTCAGGGACT
1 TGAATATTCAAATAATATGAGTTTATTTTAAAATAGCTAATTTACATGTTATAGGTTCAGGGACT
*
25558365 AAATTGAATAAAAGTAAATTTTTAGTGTAATTTTGTAAAATGTCAA
66 AAATTGAATAAAAGTAAATTTTTAGGGTAATTTTGTAAAATGTCAA
25558411 AAATGACCAA
Statistics
Matches: 108, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
113 108 1.00
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.39
Consensus pattern (113 bp):
TGAATATTCAAATAATATGAGTTTATTTTAAAATAGCTAATTTACATGTTATAGGTTCAGGGACT
AAATTGAATAAAAGTAAATTTTTAGGGTAATTTTGTAAAATGTCAATA
Found at i:25558885 original size:23 final size:23
Alignment explanation
Indices: 25558858--25558991 Score: 159
Period size: 23 Copynumber: 6.0 Consensus size: 23
25558848 GCTATGCCGA
*
25558858 TCAGGAACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
*
25558881 TCAGGCACTTTATGTGTCATATT
1 TCAGGCACTTTATGTGTCGTATT
* **
25558904 TCAGGCACCTCGTGTGTCGTATAT
1 TCAGGCACTTTATGTGTCGTAT-T
25558928 T-AGGCACTTTATGTGTCGTATT
1 TCAGGCACTTTATGTGTCGTATT
* **
25558950 TCAGGCACCTCGTGTGTCGTA--
1 TCAGGCACTTTATGTGTCGTATT
25558971 TCAGGCAC-TTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTAT
25558992 ACTGATCAGG
Statistics
Matches: 94, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
20 10 0.11
21 8 0.09
22 2 0.02
23 72 0.77
24 2 0.02
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (23 bp):
TCAGGCACTTTATGTGTCGTATT
Found at i:25558920 original size:46 final size:46
Alignment explanation
Indices: 25558870--25558987 Score: 190
Period size: 46 Copynumber: 2.6 Consensus size: 46
25558860 AGGAACTTTA
25558870 TGTGTCGTATTTCAGGCACTTTATGTGTCATATTTCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACTTTATGTGTCATATTTCAGGCACCTCG
*
25558916 TGTGTCGTATATT-AGGCACTTTATGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTAT-TTCAGGCACTTTATGTGTCATATTTCAGGCACCTCG
25558962 TGTGTCGTA--TCAGGCAC-TTATGTGTC
1 TGTGTCGTATTTCAGGCACTTTATGTGTC
25558988 GTATACTGAT
Statistics
Matches: 69, Mismatches: 1, Indels: 7
0.90 0.01 0.09
Matches are distributed among these distances:
43 10 0.14
44 6 0.09
46 51 0.74
47 2 0.03
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.39
Consensus pattern (46 bp):
TGTGTCGTATTTCAGGCACTTTATGTGTCATATTTCAGGCACCTCG
Found at i:25559827 original size:47 final size:47
Alignment explanation
Indices: 25559714--25559834 Score: 120
Period size: 47 Copynumber: 2.6 Consensus size: 47
25559704 ATTGACGGAA
* * * *
25559714 AAGACCATGGTTGGACCATGGCAAC-ATGTGATATGTGATTTCTGTAT
1 AAGACCAT-GTTGGACTATGGCATCGATGTGATATGTGACTACTGTAT
* * * *
25559761 AAGACCATAGCTGGGCTATGGCATCGGTGTGATATGTG-CTACTGTGT
1 AAGACCAT-GTTGGACTATGGCATCGATGTGATATGTGACTACTGTAT
*
25559808 AAGACCATGTTTGGACTATGACATCGA
1 AAGACCATG-TTGGACTATGGCATCGA
25559835 GAAAAAAAAG
Statistics
Matches: 59, Mismatches: 13, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
46 1 0.02
47 47 0.80
48 11 0.19
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (47 bp):
AAGACCATGTTGGACTATGGCATCGATGTGATATGTGACTACTGTAT
Found at i:25562582 original size:23 final size:22
Alignment explanation
Indices: 25562556--25562601 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 22
25562546 GAAATTAATT
25562556 TGAATTG-TGAACATGAGAAATGA
1 TGAATTGATGAA-ATG-GAAATGA
25562579 TGAATTGAATGAAATGGAAATGA
1 TGAATTG-ATGAAATGGAAATGA
25562602 AGCATTGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 14 0.67
24 3 0.14
25 4 0.19
ACGTcount: A:0.46, C:0.02, G:0.26, T:0.26
Consensus pattern (22 bp):
TGAATTGATGAAATGGAAATGA
Found at i:25562608 original size:23 final size:25
Alignment explanation
Indices: 25562563--25562611 Score: 66
Period size: 23 Copynumber: 2.0 Consensus size: 25
25562553 ATTTGAATTG
*
25562563 TGAACATGAGAAATGATGAATTGAA
1 TGAACATGAGAAATGAAGAATTGAA
*
25562588 TGAA-ATG-GAAATGAAGCATTGAA
1 TGAACATGAGAAATGAAGAATTGAA
25562611 T
1 T
25562612 TGTTAAGACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
23 15 0.68
24 3 0.14
25 4 0.18
ACGTcount: A:0.47, C:0.04, G:0.24, T:0.24
Consensus pattern (25 bp):
TGAACATGAGAAATGAAGAATTGAA
Found at i:25563697 original size:20 final size:21
Alignment explanation
Indices: 25563663--25563702 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
25563653 ATCAAGGATC
*
25563663 CCAATAGCTAGAAAC-TCCCT
1 CCAATAGCTACAAACGTCCCT
*
25563683 CCAATAGCTCCAAACGTCCC
1 CCAATAGCTACAAACGTCCC
25563703 AAAATCAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.33, C:0.40, G:0.10, T:0.17
Consensus pattern (21 bp):
CCAATAGCTACAAACGTCCCT
Found at i:25568221 original size:18 final size:18
Alignment explanation
Indices: 25568198--25568255 Score: 64
Period size: 18 Copynumber: 3.1 Consensus size: 18
25568188 ATTTAAGCCA
25568198 ATTTAAAATTTAAAAATT
1 ATTTAAAATTTAAAAATT
25568216 ATTTAAAATTATAAAAAAGTT
1 ATTTAAAATT-T-AAAAA-TT
**
25568237 ATAAAAAATTT-AAAATT
1 ATTTAAAATTTAAAAATT
25568254 AT
1 AT
25568256 AAATTTTTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
17 4 0.11
18 14 0.40
19 1 0.03
20 6 0.17
21 10 0.29
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (18 bp):
ATTTAAAATTTAAAAATT
Found at i:25568238 original size:11 final size:10
Alignment explanation
Indices: 25568209--25568251 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
25568199 TTTAAAATTT
*
25568209 AAAAATTATT
1 AAAAATTATA
*
25568219 TAAAATTATA
1 AAAAATTATA
25568229 AAAAAGTTATA
1 AAAAA-TTATA
25568240 AAAAATT-TA
1 AAAAATTATA
25568249 AAA
1 AAA
25568252 TTATAAATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
9 5 0.17
10 14 0.48
11 10 0.34
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (10 bp):
AAAAATTATA
Found at i:25568381 original size:10 final size:10
Alignment explanation
Indices: 25568353--25568423 Score: 51
Period size: 10 Copynumber: 7.2 Consensus size: 10
25568343 AATATTGTTA
25568353 TTTTAT-AA-
1 TTTTATAAAT
25568361 TTTTA-AAAT
1 TTTTATAAAT
25568370 TTTTATAAAT
1 TTTTATAAAT
25568380 TTTT-TAGAAT
1 TTTTATA-AAT
* *
25568390 TTTTTTAGAAA
1 TTTTATA-AAT
* *
25568401 TTTTATGACT
1 TTTTATAAAT
25568411 TTTTAATAAAT
1 TTTT-ATAAAT
25568422 TT
1 TT
25568424 AAATTTTTAA
Statistics
Matches: 50, Mismatches: 7, Indels: 9
0.76 0.11 0.14
Matches are distributed among these distances:
8 7 0.14
9 7 0.14
10 20 0.40
11 16 0.32
ACGTcount: A:0.35, C:0.01, G:0.04, T:0.59
Consensus pattern (10 bp):
TTTTATAAAT
Found at i:25568383 original size:11 final size:11
Alignment explanation
Indices: 25568361--25568404 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
25568351 TATTTTATAA
25568361 TTTTA-AAA-T
1 TTTTAGAAATT
*
25568370 TTTTATAAATT
1 TTTTAGAAATT
*
25568381 TTTTAGAATTT
1 TTTTAGAAATT
25568392 TTTTAGAAATT
1 TTTTAGAAATT
25568403 TT
1 TT
25568405 ATGACTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
9 5 0.17
10 3 0.10
11 22 0.73
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (11 bp):
TTTTAGAAATT
Found at i:25586502 original size:92 final size:93
Alignment explanation
Indices: 25586373--25586566 Score: 381
Period size: 92 Copynumber: 2.1 Consensus size: 93
25586363 CAACATCAAC
25586373 TTAATAATAAAATATTCATAATACTTTATATTTTAAAAAATTTTATTGATATATCAATGTACGGG
1 TTAATAATAAAATATTCATAATACTTTATATTTTAAAAAATTTTATTGATATATCAATGTACGGG
25586438 TTACTATTAATATATACAGTTATATATA
66 TTACTATTAATATATACAGTTATATATA
25586466 TTAATAATAAAATATTCA-AATACTTTATATTTTAAAAAATTTTATTGATATATCAATGTACGGG
1 TTAATAATAAAATATTCATAATACTTTATATTTTAAAAAATTTTATTGATATATCAATGTACGGG
25586530 TTACTATTAATATATACAGTTATATATA
66 TTACTATTAATATATACAGTTATATATA
25586558 TTAATAATA
1 TTAATAATA
25586567 TATCAAATAC
Statistics
Matches: 101, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
92 83 0.82
93 18 0.18
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (93 bp):
TTAATAATAAAATATTCATAATACTTTATATTTTAAAAAATTTTATTGATATATCAATGTACGGG
TTACTATTAATATATACAGTTATATATA
Found at i:25593292 original size:207 final size:207
Alignment explanation
Indices: 25592937--25593352 Score: 832
Period size: 207 Copynumber: 2.0 Consensus size: 207
25592927 GTTCCCCAAT
25592937 CACAACTACTTCATTACCCCCTTCAGTTCTCAATACAACCCTCTTAGTCGTACAGTCCAAACTGA
1 CACAACTACTTCATTACCCCCTTCAGTTCTCAATACAACCCTCTTAGTCGTACAGTCCAAACTGA
25593002 CACGATGCTTGACCAACCAGTCCATCCCCAATATCATATCGAACTCCCCAAACGGAAGCTCCATC
66 CACGATGCTTGACCAACCAGTCCATCCCCAATATCATATCGAACTCCCCAAACGGAAGCTCCATC
25593067 AAATTAGCCAGAAATACTGTCCCTTGTACCTCTAAAGAAACATCCATGTACAGTTTGCTAACTCT
131 AAATTAGCCAGAAATACTGTCCCTTGTACCTCTAAAGAAACATCCATGTACAGTTTGCTAACTCT
25593132 AACAGATTGCCC
196 AACAGATTGCCC
25593144 CACAACTACTTCATTACCCCCTTCAGTTCTCAATACAACCCTCTTAGTCGTACAGTCCAAACTGA
1 CACAACTACTTCATTACCCCCTTCAGTTCTCAATACAACCCTCTTAGTCGTACAGTCCAAACTGA
25593209 CACGATGCTTGACCAACCAGTCCATCCCCAATATCATATCGAACTCCCCAAACGGAAGCTCCATC
66 CACGATGCTTGACCAACCAGTCCATCCCCAATATCATATCGAACTCCCCAAACGGAAGCTCCATC
25593274 AAATTAGCCAGAAATACTGTCCCTTGTACCTCTAAAGAAACATCCATGTACAGTTTGCTAACTCT
131 AAATTAGCCAGAAATACTGTCCCTTGTACCTCTAAAGAAACATCCATGTACAGTTTGCTAACTCT
25593339 AACAGATTGCCC
196 AACAGATTGCCC
25593351 CA
1 CA
25593353 GCGAGTTTAG
Statistics
Matches: 209, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
207 209 1.00
ACGTcount: A:0.31, C:0.33, G:0.11, T:0.25
Consensus pattern (207 bp):
CACAACTACTTCATTACCCCCTTCAGTTCTCAATACAACCCTCTTAGTCGTACAGTCCAAACTGA
CACGATGCTTGACCAACCAGTCCATCCCCAATATCATATCGAACTCCCCAAACGGAAGCTCCATC
AAATTAGCCAGAAATACTGTCCCTTGTACCTCTAAAGAAACATCCATGTACAGTTTGCTAACTCT
AACAGATTGCCC
Found at i:25598677 original size:12 final size:12
Alignment explanation
Indices: 25598659--25598689 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
25598649 CCCATATTAA
25598659 AATTTTTTATAT
1 AATTTTTTATAT
*
25598671 TATTTTTTATAT
1 AATTTTTTATAT
25598683 AATTTTT
1 AATTTTT
25598690 AAATATATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (12 bp):
AATTTTTTATAT
Found at i:25601438 original size:3 final size:3
Alignment explanation
Indices: 25601430--25601461 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
25601420 ACCTTAGTCA
25601430 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
25601462 CATACCCAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:25616817 original size:90 final size:90
Alignment explanation
Indices: 25616693--25617066 Score: 597
Period size: 90 Copynumber: 4.1 Consensus size: 90
25616683 TCGACAGCAA
** * *
25616693 AGCAGATCGAAGATACCAACCTAGTCTCCCTGAGCAGCAGTGAAGTAGGTTGAAAGACATTACAG
1 AGCAGATCGAAGACCCCAGCCTAGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAGACATTACAG
25616758 ATCTTATCTCCCTAAGCAGTAGTGG
66 ATCTTATCTCCCTAAGCAGTAGTGG
* * *
25616783 AGCAAATCGAAGACCCCAGTCTAGTCTCCTTGAGCAGCAGTGGAGTAGGTTGAAAGACATTACAG
1 AGCAGATCGAAGACCCCAGCCTAGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAGACATTACAG
25616848 ATCTTATCTCCCTAAGCAGTAGTGG
66 ATCTTATCTCCCTAAGCAGTAGTGG
**
25616873 AGCAGATCGAAGACCCTGGCCTAGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAGACATTACAG
1 AGCAGATCGAAGACCCCAGCCTAGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAGACATTACAG
*
25616938 ATCTTATCTCCCTAAGTAGTAGTGG
66 ATCTTATCTCCCTAAGCAGTAGTGG
* *
25616963 AGCAGATCGAAGACCCCAGCCTTGTCTCCCTGAGTAGCAGTGGAGTAGGTTAAGAAA-ACATTAC
1 AGCAGATCGAAGACCCCAGCCTAGTCTCCCTGAGCAGCAGTGGAGTAGGTT--GAAAGACATTAC
* *
25617027 AGATCTTATCTCCCTAAGCAGTAATAG
64 AGATCTTATCTCCCTAAGCAGTAGTGG
25617054 AGCAGATCGAAGA
1 AGCAGATCGAAGA
25617067 AGGCGGATTT
Statistics
Matches: 262, Mismatches: 20, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
90 214 0.82
91 44 0.17
92 4 0.02
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.22
Consensus pattern (90 bp):
AGCAGATCGAAGACCCCAGCCTAGTCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAGACATTACAG
ATCTTATCTCCCTAAGCAGTAGTGG
Found at i:25616819 original size:43 final size:43
Alignment explanation
Indices: 25616693--25617007 Score: 159
Period size: 43 Copynumber: 7.0 Consensus size: 43
25616683 TCGACAGCAA
** ** *
25616693 AGCAGATCGAAGATACCAACCTAGTCTCCCTGAGCAGCAGTGA
1 AGCAGATCGAAGACCCCAGTCTAGTCTCCCTGAGCAGCAGTGG
* * * ** * *
25616736 AGTAGGTTGAAAGACATTACAGATCTTA-TCTCCCTAAGCAGTAGTGG
1 AGCAGATCG-AAGAC--CCCAG-TC-TAGTCTCCCTGAGCAGCAGTGG
* *
25616783 AGCAAATCGAAGACCCCAGTCTAGTCTCCTTGAGCAGCAGTGG
1 AGCAGATCGAAGACCCCAGTCTAGTCTCCCTGAGCAGCAGTGG
* * * ** * *
25616826 AGTAGGTTGAAAGACATTACAGATCTTA-TCTCCCTAAGCAGTAGTGG
1 AGCAGATCG-AAGAC--CCCAG-TC-TAGTCTCCCTGAGCAGCAGTGG
** *
25616873 AGCAGATCGAAGACCCTGGCCTAGTCTCCCTGAGCAGCAGTGG
1 AGCAGATCGAAGACCCCAGTCTAGTCTCCCTGAGCAGCAGTGG
* * * ** * * *
25616916 AGTAGGTTGAAAGACATTACAGATCTTA-TCTCCCTAAGTAGTAGTGG
1 AGCAGATCG-AAGAC--CCCAG-TC-TAGTCTCCCTGAGCAGCAGTGG
* * *
25616963 AGCAGATCGAAGACCCCAGCCTTGTCTCCCTGAGTAGCAGTGG
1 AGCAGATCGAAGACCCCAGTCTAGTCTCCCTGAGCAGCAGTGG
25617006 AG
1 AG
25617008 TAGGTTAAGA
Statistics
Matches: 195, Mismatches: 59, Indels: 36
0.67 0.20 0.12
Matches are distributed among these distances:
42 5 0.03
43 73 0.37
44 21 0.11
46 21 0.11
47 69 0.35
48 6 0.03
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.22
Consensus pattern (43 bp):
AGCAGATCGAAGACCCCAGTCTAGTCTCCCTGAGCAGCAGTGG
Found at i:25636879 original size:37 final size:37
Alignment explanation
Indices: 25636820--25636902 Score: 114
Period size: 37 Copynumber: 2.2 Consensus size: 37
25636810 GTCAAACTGA
25636820 AACAAGCCAAACTCTCATAAGAGCTAATCCAACCGAT
1 AACAAGCCAAACTCTCATAAGAGCTAATCCAACCGAT
* * *
25636857 AACATGCCAAATTCTCCA-AAGAGCTAATCCAACTGAT
1 AACAAGCCAAACTCT-CATAAGAGCTAATCCAACCGAT
*
25636894 AACACGCCA
1 AACAAGCCA
25636903 GATGCTCTGA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
37 39 0.95
38 2 0.05
ACGTcount: A:0.42, C:0.30, G:0.11, T:0.17
Consensus pattern (37 bp):
AACAAGCCAAACTCTCATAAGAGCTAATCCAACCGAT
Found at i:25649938 original size:39 final size:39
Alignment explanation
Indices: 25649874--25649963 Score: 135
Period size: 39 Copynumber: 2.3 Consensus size: 39
25649864 CACCAGTTTT
* * *
25649874 ACCACCACCACCTCCTGTGCCTAGAAGTGCATCATTACC
1 ACCACCACCACCTCCTATGCATAGAACTGCATCATTACC
* *
25649913 ACCCCCACCACCTCCTATTCATAGAACTGCATCATTACC
1 ACCACCACCACCTCCTATGCATAGAACTGCATCATTACC
25649952 ACCACCACCACC
1 ACCACCACCACC
25649964 ACCACCTATG
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.28, C:0.46, G:0.08, T:0.19
Consensus pattern (39 bp):
ACCACCACCACCTCCTATGCATAGAACTGCATCATTACC
Found at i:25653140 original size:22 final size:21
Alignment explanation
Indices: 25653110--25653155 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
25653100 GTCTTTTACC
*
25653110 ACCCTTAAAGGGCTT-TCATAAT
1 ACCCATAAAGGG-TTATCAT-AT
25653132 ACCCATAAAGGGTTATCATAT
1 ACCCATAAAGGGTTATCATAT
25653153 ACC
1 ACC
25653156 GGTGTGCACC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 7 0.32
22 15 0.68
ACGTcount: A:0.35, C:0.24, G:0.13, T:0.28
Consensus pattern (21 bp):
ACCCATAAAGGGTTATCATAT
Found at i:25657593 original size:15 final size:15
Alignment explanation
Indices: 25657573--25657604 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
25657563 TAGAATATAT
*
25657573 AAGAAAAATTTGGAA
1 AAGAAAAATATGGAA
25657588 AAGAAAAATATGGAA
1 AAGAAAAATATGGAA
25657603 AA
1 AA
25657605 AATTGAACTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.19, T:0.16
Consensus pattern (15 bp):
AAGAAAAATATGGAA
Found at i:25658825 original size:6 final size:6
Alignment explanation
Indices: 25658814--25658845 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
25658804 TATCGTAACC
25658814 TTTCCT TTTCCT TTTCCT TTTCCT TTTCCT TT
1 TTTCCT TTTCCT TTTCCT TTTCCT TTTCCT TT
25658846 ACATTGTTGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (6 bp):
TTTCCT
Found at i:25673331 original size:20 final size:20
Alignment explanation
Indices: 25673267--25673331 Score: 53
Period size: 20 Copynumber: 3.3 Consensus size: 20
25673257 TACCAAAGTA
* * *
25673267 CAAACAGGGCCACAAATGTG
1 CAAACAGGGGCACGAATGGG
* * *
25673287 CAAATAGGGGTATCGAA--GA
1 CAAACAGGGGCA-CGAATGGG
25673306 CAAACAGGGGCACGAATGGG
1 CAAACAGGGGCACGAATGGG
25673326 CAAACA
1 CAAACA
25673332 AGGGTATTGA
Statistics
Matches: 33, Mismatches: 9, Indels: 6
0.69 0.19 0.12
Matches are distributed among these distances:
18 4 0.12
19 10 0.30
20 16 0.48
21 3 0.09
ACGTcount: A:0.42, C:0.20, G:0.29, T:0.09
Consensus pattern (20 bp):
CAAACAGGGGCACGAATGGG
Found at i:25673349 original size:20 final size:20
Alignment explanation
Indices: 25673305--25673371 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 20
25673295 GGTATCGAAG
* * *
25673305 ACAAACAGGGGCACGAATGG
1 ACAAACAAGGGCATGAATGT
* *
25673325 GCAAACAAGGGTATTGAA-GT
1 ACAAACAAGGGCA-TGAATGT
* *
25673345 ACAAATAGGGGCATGAATGT
1 ACAAACAAGGGCATGAATGT
25673365 ACAAACA
1 ACAAACA
25673372 TTCAATAATT
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
19 4 0.11
20 28 0.80
21 3 0.09
ACGTcount: A:0.43, C:0.15, G:0.28, T:0.13
Consensus pattern (20 bp):
ACAAACAAGGGCATGAATGT
Found at i:25673370 original size:40 final size:40
Alignment explanation
Indices: 25673262--25673371 Score: 132
Period size: 39 Copynumber: 2.8 Consensus size: 40
25673252 AGGGGTACCA
* * * *
25673262 AAGTACAAACAGGGCCACAAATGTGCAAATAGGGGTATCG
1 AAGTACAAACAGGGGCACGAATGTGCAAACAAGGGTATCG
* *
25673302 AAG-ACAAACAGGGGCACGAATGGGCAAACAAGGGTATTG
1 AAGTACAAACAGGGGCACGAATGTGCAAACAAGGGTATCG
* * *
25673341 AAGTACAAATAGGGGCATGAATGTACAAACA
1 AAGTACAAACAGGGGCACGAATGTGCAAACA
25673372 TTCAATAATT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
39 33 0.56
40 26 0.44
ACGTcount: A:0.43, C:0.15, G:0.28, T:0.14
Consensus pattern (40 bp):
AAGTACAAACAGGGGCACGAATGTGCAAACAAGGGTATCG
Found at i:25677446 original size:22 final size:22
Alignment explanation
Indices: 25677418--25677465 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
25677408 CCGAGTACAA
25677418 ATACATCACTTTCTATAGTTTT
1 ATACATCACTTTCTATAGTTTT
25677440 ATACATCACTTTCTATAGTTTT
1 ATACATCACTTTCTATAGTTTT
25677462 ATAC
1 ATAC
25677466 TTGATTTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.29, C:0.19, G:0.04, T:0.48
Consensus pattern (22 bp):
ATACATCACTTTCTATAGTTTT
Found at i:25684354 original size:27 final size:27
Alignment explanation
Indices: 25684300--25684354 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
25684290 AATATAATAT
*
25684300 AATTATAAAAAAATTAAATTGTACTTA
1 AATTATAAAAAAATTAAATTGTAATTA
* *
25684327 AATTATTAAAATATTTAAATT-TAATTA
1 AATTA-TAAAAAAATTAAATTGTAATTA
25684354 A
1 A
25684355 TTTTATAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 11 0.46
28 13 0.54
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (27 bp):
AATTATAAAAAAATTAAATTGTAATTA
Found at i:25685848 original size:13 final size:13
Alignment explanation
Indices: 25685832--25685861 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
25685822 TTTTTACATT
*
25685832 TTAATTTTCTTAG
1 TTAATTTACTTAG
25685845 TTAATTTACTTAG
1 TTAATTTACTTAG
25685858 TTAA
1 TTAA
25685862 AATCTAGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (13 bp):
TTAATTTACTTAG
Found at i:25692028 original size:16 final size:15
Alignment explanation
Indices: 25691998--25692031 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
25691988 ATAACTAATA
*
25691998 TATAATTATATTTAT
1 TATAATTATAATTAT
25692013 TATAATGTATAATTAT
1 TATAAT-TATAATTAT
25692029 TAT
1 TAT
25692032 CAACTTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (15 bp):
TATAATTATAATTAT
Found at i:25696749 original size:13 final size:13
Alignment explanation
Indices: 25696733--25696762 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
25696723 TTTTTACCTT
*
25696733 TTAATTTTCTTAG
1 TTAATTTACTTAG
25696746 TTAATTTACTTAG
1 TTAATTTACTTAG
25696759 TTAA
1 TTAA
25696763 AATCTTGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.57
Consensus pattern (13 bp):
TTAATTTACTTAG
Found at i:25697968 original size:22 final size:22
Alignment explanation
Indices: 25697943--25697986 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
25697933 AACATCTTTC
25697943 TTATCTTATTA-CAAAAGAAAAA
1 TTATCTTA-TAGCAAAAGAAAAA
*
25697965 TTATCTTATAGCAAAATAAAAA
1 TTATCTTATAGCAAAAGAAAAA
25697987 AGACTAAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 2 0.10
22 18 0.90
ACGTcount: A:0.55, C:0.09, G:0.05, T:0.32
Consensus pattern (22 bp):
TTATCTTATAGCAAAAGAAAAA
Found at i:25699854 original size:41 final size:41
Alignment explanation
Indices: 25699809--25699911 Score: 116
Period size: 41 Copynumber: 2.5 Consensus size: 41
25699799 TTTAGTGACG
* * * *
25699809 TTTTTGAAAAAGCGCCGCTAAGGCTCGGAGCTTTAGCGGCA
1 TTTTTGAGAAAGCGCCGCTAAGGCTCGGAACTTTAACAGCA
** * **
25699850 TTTTTGAGAAAGCTTCGCTAATGCTCGGAACTTTAACAGTG
1 TTTTTGAGAAAGCGCCGCTAAGGCTCGGAACTTTAACAGCA
*
25699891 TTTTTGAGAAAGCGCCACTAA
1 TTTTTGAGAAAGCGCCGCTAA
25699912 AACATTTTAT
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.27, C:0.19, G:0.24, T:0.29
Consensus pattern (41 bp):
TTTTTGAGAAAGCGCCGCTAAGGCTCGGAACTTTAACAGCA
Found at i:25700035 original size:25 final size:26
Alignment explanation
Indices: 25699993--25700043 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
25699983 AATGGATAAA
* * *
25699993 TTTGAAATAATGACACATAGAAAAAT
1 TTTGAAATAATAAAACATAAAAAAAT
25700019 TTTGAAATAA-AAAACATAAAAAAAT
1 TTTGAAATAATAAAACATAAAAAAAT
25700044 ATTCGTTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.61, C:0.06, G:0.08, T:0.25
Consensus pattern (26 bp):
TTTGAAATAATAAAACATAAAAAAAT
Found at i:25700323 original size:14 final size:15
Alignment explanation
Indices: 25700295--25700327 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
25700285 AAAGTTTATA
25700295 GATTATGGAATTAGG
1 GATTATGGAATTAGG
25700310 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
25700324 GATT
1 GATT
25700328 CTGGTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:25700456 original size:21 final size:21
Alignment explanation
Indices: 25700430--25700471 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
25700420 TCAGGTTAGG
* *
25700430 GGTTAGGGGGTAGGGGGTAGA
1 GGTTAGAGGGTAAGGGGTAGA
25700451 GGTTAGAGGGTAAGGGGTAGA
1 GGTTAGAGGGTAAGGGGTAGA
25700472 TTCAGGTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.57, T:0.19
Consensus pattern (21 bp):
GGTTAGAGGGTAAGGGGTAGA
Found at i:25700557 original size:7 final size:7
Alignment explanation
Indices: 25700534--25700585 Score: 50
Period size: 7 Copynumber: 7.4 Consensus size: 7
25700524 TAAATAAGGT
25700534 TTAGGGG
1 TTAGGGG
**
25700541 TTAGTAG
1 TTAGGGG
25700548 TTAGGGG
1 TTAGGGG
*
25700555 TTAGGGA
1 TTAGGGG
*
25700562 TTTGGGG
1 TTAGGGG
*
25700569 TTATGGG
1 TTAGGGG
*
25700576 TTAGAGG
1 TTAGGGG
25700583 TTA
1 TTA
25700586 AGAGTTAGTG
Statistics
Matches: 34, Mismatches: 11, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.37
Consensus pattern (7 bp):
TTAGGGG
Found at i:25700710 original size:7 final size:7
Alignment explanation
Indices: 25700698--25700747 Score: 55
Period size: 7 Copynumber: 7.1 Consensus size: 7
25700688 ATTGTAAAAG
25700698 AGGGGTT
1 AGGGGTT
25700705 AGGGGTT
1 AGGGGTT
*
25700712 AGAGGTT
1 AGGGGTT
* **
25700719 AAGAATT
1 AGGGGTT
*
25700726 AGGGATT
1 AGGGGTT
25700733 AGGGGTT
1 AGGGGTT
25700740 AGGGGTT
1 AGGGGTT
25700747 A
1 A
25700748 TGGATAGGTA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
7 35 1.00
ACGTcount: A:0.26, C:0.00, G:0.46, T:0.28
Consensus pattern (7 bp):
AGGGGTT
Found at i:25705328 original size:43 final size:43
Alignment explanation
Indices: 25705219--25705406 Score: 247
Period size: 43 Copynumber: 4.4 Consensus size: 43
25705209 TAATTTTTTT
* * *
25705219 TAAAGGTTATGTT-TTTAGCGGCGTTT-TTACGAGAAGCGCCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGAC-AAAAGCGCCGC
* * **
25705261 TAAAGGT-TTGTTCTTTTGCGGCGTTTGTGACAAAAGCGTGGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGACAAAAGCGCCGC
25705303 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGACAAAAGCGCCGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGACAAAAGCGCCGC
* * *
25705346 TGAAGGTCATGTTCTTTAGCGGCGTTTGTGACAAAAGTGCTGC
1 TAAAGGTCATGTTCTTTAGCGGCGTTTGTGACAAAAGCGCCGC
*
25705389 TAAAGGTCATGATCTTTA
1 TAAAGGTCATGTTCTTTA
25705407 CCGAAGTTTT
Statistics
Matches: 128, Mismatches: 15, Indels: 5
0.86 0.10 0.03
Matches are distributed among these distances:
41 4 0.03
42 34 0.27
43 90 0.70
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.33
Consensus pattern (43 bp):
TAAAGGTCATGTTCTTTAGCGGCGTTTGTGACAAAAGCGCCGC
Found at i:25708321 original size:17 final size:17
Alignment explanation
Indices: 25708299--25708332 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
25708289 CACTAACACT
* *
25708299 AAAATGTAATGACAATG
1 AAAATGCAATGAAAATG
25708316 AAAATGCAATGAAAATG
1 AAAATGCAATGAAAATG
25708333 TATACTTATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.56, C:0.06, G:0.18, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGAAAATG
Found at i:25734995 original size:5 final size:5
Alignment explanation
Indices: 25734985--25735011 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
25734975 AAAATGTACA
25734985 TTATT TTATT TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
25735012 TGTTCGTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:25744209 original size:49 final size:49
Alignment explanation
Indices: 25744141--25744241 Score: 141
Period size: 49 Copynumber: 2.1 Consensus size: 49
25744131 TCTTATAAGG
*
25744141 AACATATGGAAAGCATTAAACATGTTATATTCTTTCCAAAAAT-AATTAT
1 AACATATGGAAAGCATTAAAAATGTTATATTCTTTCC-AAAATGAATTAT
* * * *
25744190 AACATATTGACAGTATTAAAAATGTTATATTCTTTTCAAAATGAATTAT
1 AACATATGGAAAGCATTAAAAATGTTATATTCTTTCCAAAATGAATTAT
25744239 AAC
1 AAC
25744242 TACCATGTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
48 5 0.11
49 41 0.89
ACGTcount: A:0.45, C:0.11, G:0.08, T:0.37
Consensus pattern (49 bp):
AACATATGGAAAGCATTAAAAATGTTATATTCTTTCCAAAATGAATTAT
Found at i:25751623 original size:187 final size:186
Alignment explanation
Indices: 25751308--25751677 Score: 553
Period size: 187 Copynumber: 2.0 Consensus size: 186
25751298 TCTCTCAATT
* * *
25751308 GGAATAACCAAATCTTGTCACTTGCGAAAGATAAATAAACTGAATACTTCGATATTATAAAAGAA
1 GGAATAACCAAATCTTATCACTTACGAAAGAGAAATAAACTGAATACTTCGATATTATAAAAGAA
* *
25751373 CTATTAGATCGAAATCAATTCCAAAAGGAAAGAAGCATTTCTGGAAAACAAAGGAAAACTTAATC
66 CTATTAGATCAAAATCAATTCCAAAAGGAAAGAAGAATTTCTGGAAAACAAAGGAAAACTTAATC
25751438 TAAATACTACTCAAAAACTTCGAGGGGGTTTTGGATGCGTCTAAGAAAACTTAGATC
131 TAAATACTACTCAAAAACTTCG-GGGGGTTTTGGATGCGTCTAAGAAAACTTAGATC
* * * * *
25751495 GGAATAATCAAATCTTATGACTTACGAAAGAGAAATAAATTGAATACTTTGATATTATAAAATAA
1 GGAATAACCAAATCTTATCACTTACGAAAGAGAAATAAACTGAATACTTCGATATTATAAAAGAA
* * * *
25751560 CTCTTGGATCAAAATCGATTCCAAGAGGAAAGAA-AATTTTCTGGAAAACAAAGGAAAACTTAAT
66 CTATTAGATCAAAATCAATTCCAAAAGGAAAGAAGAA-TTTCTGGAAAACAAAGGAAAACTTAAT
** * *
25751624 CTAAATACTACTCATCAACTTCGGGGGGTTTTGGATGTGTCTAAGAAGACTTAG
130 CTAAATACTACTCAAAAACTTCGGGGGGTTTTGGATGCGTCTAAGAAAACTTAG
25751678 TTACATTAAA
Statistics
Matches: 164, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
186 30 0.18
187 134 0.82
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (186 bp):
GGAATAACCAAATCTTATCACTTACGAAAGAGAAATAAACTGAATACTTCGATATTATAAAAGAA
CTATTAGATCAAAATCAATTCCAAAAGGAAAGAAGAATTTCTGGAAAACAAAGGAAAACTTAATC
TAAATACTACTCAAAAACTTCGGGGGGTTTTGGATGCGTCTAAGAAAACTTAGATC
Found at i:25754506 original size:29 final size:29
Alignment explanation
Indices: 25754436--25754508 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 29
25754426 TTCACCACTT
* * *
25754436 AGGCGTCCTTTTAATAGAGTTGGCCACAA
1 AGGCATCCTTTTAATAGAGATAGCCACAA
* *
25754465 A-GCATTCGTTTAACTA-AGATAGCCACAA
1 AGGCATCCTTTTAA-TAGAGATAGCCACAA
25754493 AGGCATCCTTTTAATA
1 AGGCATCCTTTTAATA
25754509 AAGGTAACCA
Statistics
Matches: 35, Mismatches: 7, Indels: 5
0.74 0.15 0.11
Matches are distributed among these distances:
28 22 0.63
29 13 0.37
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.29
Consensus pattern (29 bp):
AGGCATCCTTTTAATAGAGATAGCCACAA
Found at i:25774316 original size:13 final size:13
Alignment explanation
Indices: 25774295--25774324 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
25774285 CTACATGGGT
*
25774295 CACATGGCTGAGA
1 CACAAGGCTGAGA
25774308 CACAAGGCTGAGA
1 CACAAGGCTGAGA
25774321 CACA
1 CACA
25774325 TGCCTGTGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.27, G:0.27, T:0.10
Consensus pattern (13 bp):
CACAAGGCTGAGA
Found at i:25777350 original size:27 final size:26
Alignment explanation
Indices: 25777320--25777494 Score: 95
Period size: 27 Copynumber: 6.5 Consensus size: 26
25777310 GTACGTTGTC
*
25777320 AAGGCATTCCATTTAGAATTTGCCACG
1 AAGGCATTCC-TTTAGAATTTGCCACA
* * * * *
25777347 AAGGCTTTCCCTTCAGAGTCTACCACA
1 AAGGCATT-CCTTTAGAATTTGCCACA
* * *
25777374 AAGGCATTCCTTTCGTATATTGCTACA
1 AAGGCATTCCTTTAGAAT-TTGCCACA
* *
25777401 AAGGCATTCCTTTCA-TATATTGCCAAA
1 AAGGCATTCCTTT-AGAAT-TTGCCACA
* **
25777428 AAGGCATT-GTTTCCATATATTGCCACA
1 AAGGCATTCCTTTAGA-AT-TTGCCACA
* * *
25777455 AAGGCATTCCTTCCA-TATATTACCACA
1 AAGGCATTCCTT-TAGAAT-TTGCCACA
25777482 AAGGCATTCCTTT
1 AAGGCATTCCTTT
25777495 CATAACGTGT
Statistics
Matches: 114, Mismatches: 27, Indels: 15
0.73 0.17 0.10
Matches are distributed among these distances:
26 9 0.08
27 101 0.89
28 4 0.04
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (26 bp):
AAGGCATTCCTTTAGAATTTGCCACA
Found at i:25777405 original size:54 final size:54
Alignment explanation
Indices: 25777320--25777495 Score: 180
Period size: 54 Copynumber: 3.3 Consensus size: 54
25777310 GTACGTTGTC
* * * * * *
25777320 AAGGCATTCCATTTAGAAT-TTGCCACGAAGGCTTTCCCTTCAGAGT-CTACCACA
1 AAGGCATTCC-TTTCGTATATTGCCACAAAGGCATTCCCTTCATA-TATTACCACA
* * * *
25777374 AAGGCATTCCTTTCGTATATTGCTACAAAGGCATTCCTTTCATATATTGCCAAA
1 AAGGCATTCCTTTCGTATATTGCCACAAAGGCATTCCCTTCATATATTACCACA
* *
25777428 AAGGCATT-GTTTCCATATATTGCCACAAAGGCATT-CCTTCCATATATTACCACA
1 AAGGCATTCCTTT-CGTATATTGCCACAAAGGCATTCCCTT-CATATATTACCACA
25777482 AAGGCATTCCTTTC
1 AAGGCATTCCTTTC
25777496 ATAACGTGTT
Statistics
Matches: 100, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
53 13 0.13
54 84 0.84
55 3 0.03
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.32
Consensus pattern (54 bp):
AAGGCATTCCTTTCGTATATTGCCACAAAGGCATTCCCTTCATATATTACCACA
Found at i:25777498 original size:27 final size:27
Alignment explanation
Indices: 25777369--25777498 Score: 190
Period size: 27 Copynumber: 4.8 Consensus size: 27
25777359 TCAGAGTCTA
*
25777369 CCACAAAGGCATTCCTTTCGTATATTG
1 CCACAAAGGCATTCCTTTCATATATTG
*
25777396 CTACAAAGGCATTCCTTTCATATATTG
1 CCACAAAGGCATTCCTTTCATATATTG
* *
25777423 CCAAAAAGGCATT-GTTTCCATATATTG
1 CCACAAAGGCATTCCTTT-CATATATTG
* *
25777450 CCACAAAGGCATTCCTTCCATATATTA
1 CCACAAAGGCATTCCTTTCATATATTG
25777477 CCACAAAGGCATTCCTTTCATA
1 CCACAAAGGCATTCCTTTCATA
25777499 ACGTGTTTAT
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
26 3 0.03
27 86 0.95
28 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (27 bp):
CCACAAAGGCATTCCTTTCATATATTG
Found at i:25782216 original size:27 final size:27
Alignment explanation
Indices: 25782186--25782422 Score: 178
Period size: 27 Copynumber: 8.8 Consensus size: 27
25782176 TACAGTCCGT
* *
25782186 CAAAAAAGAATTCCTTTAATATATTTC
1 CAAAAAAGCATTCCTTTCATATATTTC
*
25782213 CAAAAAGGCATTCCTTTCATATATTTC
1 CAAAAAAGCATTCCTTTCATATATTTC
* *
25782240 CACAAAAGTC-TTCC-TTCTATATATTGC
1 CAAAAAAG-CATTCCTTTC-ATATATTTC
* * * *
25782267 CATAAAAGAATTCCTTTCATGTATTTT
1 CAAAAAAGCATTCCTTTCATATATTTC
* * *
25782294 CATAAAGGCATTCCTTCCATATATTGT-
1 CAAAAAAGCATTCCTTTCATATATT-TC
* * *
25782321 CACAAAGGCATTCCTTTCATATA-TTG
1 CAAAAAAGCATTCCTTTCATATATTTC
* * *
25782347 CAACAAAGGCTTTCCTTTCATATATTGC
1 CAA-AAAAGCATTCCTTTCATATATTTC
* * *
25782375 CATAAAGGCATTCC-TTCTATATATTGC
1 CAAAAAAGCATTCCTTTC-ATATATTTC
* * *
25782402 CACATAGGCATTCCTTTCATA
1 CAAAAAAGCATTCCTTTCATA
25782423 GCGTGTTCAC
Statistics
Matches: 175, Mismatches: 25, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
25 1 0.01
26 9 0.05
27 154 0.88
28 11 0.06
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.37
Consensus pattern (27 bp):
CAAAAAAGCATTCCTTTCATATATTTC
Found at i:25782247 original size:54 final size:54
Alignment explanation
Indices: 25782189--25782422 Score: 233
Period size: 54 Copynumber: 4.3 Consensus size: 54
25782179 AGTCCGTCAA
* * * *
25782189 AAAAGAATTCCTTTAATATATTTCCAAAAAGGCATTCCTTTCATATATTTCCAC
1 AAAAGCATTCCTTTCATATATTGCCAAAAAGGCATTCCTTTCATATATTGCCAC
* * ** *
25782243 AAAAGTC-TTCC-TTCTATATATTGCCATAAAA-GAATTCCTTTCATGTATTTTCAT
1 AAAAG-CATTCCTTTC-ATATATTGCCA-AAAAGGCATTCCTTTCATATATTGCCAC
* * * * *
25782297 AAAGGCATTCCTTCCATATATTGTCACAAAGGCATTCCTTTCATATATTGCAAC
1 AAAAGCATTCCTTTCATATATTGCCAAAAAGGCATTCCTTTCATATATTGCCAC
* * *
25782351 AAAGGCTTTCCTTTCATATATTGCCATAAAGGCATTCC-TTCTATATATTGCCAC
1 AAAAGCATTCCTTTCATATATTGCCAAAAAGGCATTCCTTTC-ATATATTGCCAC
* *
25782405 ATAGGCATTCCTTTCATA
1 AAAAGCATTCCTTTCATA
25782423 GCGTGTTCAC
Statistics
Matches: 149, Mismatches: 24, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
53 9 0.06
54 134 0.90
55 6 0.04
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.38
Consensus pattern (54 bp):
AAAAGCATTCCTTTCATATATTGCCAAAAAGGCATTCCTTTCATATATTGCCAC
Found at i:25782275 original size:81 final size:82
Alignment explanation
Indices: 25782189--25782422 Score: 273
Period size: 81 Copynumber: 2.9 Consensus size: 82
25782179 AGTCCGTCAA
* * *
25782189 AAAAGAATTCCTTTAATATATTTCCAAAAAGGCATTCCTTTCATATATTTCCACAAAAGTC-TTC
1 AAAAGAATTCCTTTCATATATTTCCATAAAGGCATTCCTTTCATATATTTCCACAAAAGGCATTC
* *
25782253 C-TTCTATATATTGCCAT
66 CTTTC-ATATATTGCAAC
* * *
25782270 AAAAGAATTCCTTTCATGTATTTTCATAAAGGCATTCCTTCCATATATTGT-CAC-AAAGGCATT
1 AAAAGAATTCCTTTCATATATTTCCATAAAGGCATTCCTTTCATATATT-TCCACAAAAGGCATT
25782333 CCTTTCATATATTGCAAC
65 CCTTTCATATATTGCAAC
* ** * * *
25782351 AAAGGCTTTCCTTTCATATATTGCCATAAAGGCATTCC-TTCTATATATTGCCAC-ATAGGCATT
1 AAAAGAATTCCTTTCATATATTTCCATAAAGGCATTCCTTTC-ATATATTTCCACAAAAGGCATT
25782414 CCTTTCATA
65 CCTTTCATA
25782423 GCGTGTTCAC
Statistics
Matches: 131, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
80 7 0.05
81 120 0.92
82 4 0.03
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.38
Consensus pattern (82 bp):
AAAAGAATTCCTTTCATATATTTCCATAAAGGCATTCCTTTCATATATTTCCACAAAAGGCATTC
CTTTCATATATTGCAAC
Found at i:25785222 original size:22 final size:22
Alignment explanation
Indices: 25785194--25785238 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
25785184 TAACTATTTG
25785194 TTCAGGTTCATTT-GAGTCTAGA
1 TTCAGGTTCATTTGGA-TCTAGA
25785216 TTCAGGTTCATTTGGATCTAGA
1 TTCAGGTTCATTTGGATCTAGA
25785238 T
1 T
25785239 GACATTATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 20 0.91
23 2 0.09
ACGTcount: A:0.22, C:0.13, G:0.22, T:0.42
Consensus pattern (22 bp):
TTCAGGTTCATTTGGATCTAGA
Found at i:25790684 original size:172 final size:172
Alignment explanation
Indices: 25790396--25790741 Score: 656
Period size: 172 Copynumber: 2.0 Consensus size: 172
25790386 ATTTAAAGAT
25790396 CTTTGGTTGTCCTGCGTATGCTCATGTTGATAATGGAAAATTGGAACTAAGATCCATTAAATGTG
1 CTTTGGTTGTCCTGCGTATGCTCATGTTGATAATGGAAAATTGGAACTAAGATCCATTAAATGTG
25790461 TTTTTCTTGGTTATAAAGCTGGTGTAAAAAGGTATAAGTTATGGAGTCCTGAAATAGAAAAGTTG
66 TTTTTCTTGGTTATAAAGCTGGTGTAAAAAGGTATAAGTTATGGAGTCCTGAAATAGAAAAGTTG
25790526 TGATTAGCAGAGAAGTTGTTTTAAATGAAACTGCTATGCTAC
131 TGATTAGCAGAGAAGTTGTTTTAAATGAAACTGCTATGCTAC
25790568 CTTTGGTTGTCCTGCGTATGCTCATGTTGATAATGGAAAATTGGAACTAAGATCCATTAAATGTG
1 CTTTGGTTGTCCTGCGTATGCTCATGTTGATAATGGAAAATTGGAACTAAGATCCATTAAATGTG
*
25790633 TTTTTCTTGGTTATAAAGCTGGTGTAAAAAGGTATAAGTTATGGTGTCCTGAAATAGAAAAGTTG
66 TTTTTCTTGGTTATAAAGCTGGTGTAAAAAGGTATAAGTTATGGAGTCCTGAAATAGAAAAGTTG
* **
25790698 TGATTAGCAGAGATGTTGTTTTTGATGAAACTGCTATGCTAC
131 TGATTAGCAGAGAAGTTGTTTTAAATGAAACTGCTATGCTAC
25790740 CT
1 CT
25790742 AACTTATCTA
Statistics
Matches: 170, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
172 170 1.00
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (172 bp):
CTTTGGTTGTCCTGCGTATGCTCATGTTGATAATGGAAAATTGGAACTAAGATCCATTAAATGTG
TTTTTCTTGGTTATAAAGCTGGTGTAAAAAGGTATAAGTTATGGAGTCCTGAAATAGAAAAGTTG
TGATTAGCAGAGAAGTTGTTTTAAATGAAACTGCTATGCTAC
Found at i:25795108 original size:18 final size:17
Alignment explanation
Indices: 25795005--25795110 Score: 63
Period size: 17 Copynumber: 5.9 Consensus size: 17
25794995 TTAGAAGTTG
* *
25795005 ATTTTTATTTATTTTTA
1 ATTTTTAATAATTTTTA
25795022 TATTTTTATATAAGTTTTGATA
1 -ATTTTTA-ATAA-TTTT--TA
* *
25795044 ATCTTTTAAT-TTTTTTG
1 AT-TTTTAATAATTTTTA
* *
25795061 ATTTTT-TTACATATTTA
1 ATTTTTAATA-ATTTTTA
25795078 ATTTTTAATAATTTTTA
1 ATTTTTAATAATTTTTA
*
25795095 ATTTATTTATAATTTT
1 ATTT-TTAATAATTTT
25795111 GTACTCATCG
Statistics
Matches: 68, Mismatches: 11, Indels: 18
0.70 0.11 0.19
Matches are distributed among these distances:
15 1 0.01
16 4 0.06
17 23 0.34
18 19 0.28
19 6 0.09
20 4 0.06
21 4 0.06
22 7 0.10
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.67
Consensus pattern (17 bp):
ATTTTTAATAATTTTTA
Found at i:25795615 original size:22 final size:21
Alignment explanation
Indices: 25795571--25795646 Score: 82
Period size: 22 Copynumber: 3.4 Consensus size: 21
25795561 CTCTCTAAGA
*
25795571 TTCTCTCTAATATT-CTCTTAAT
1 TTCTCTC-AAT-TTCCTCTCAAT
25795593 TTCCTCTCAATTTCCTCTCAAT
1 TT-CTCTCAATTTCCTCTCAAT
*
25795615 TTGCTCTCAATTTCCTTTCAAAT
1 TT-CTCTCAATTTCCTCTC-AAT
25795638 TTCTCTCAA
1 TTCTCTCAA
25795647 ATCCCTATTT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
21 2 0.04
22 36 0.75
23 10 0.21
ACGTcount: A:0.21, C:0.29, G:0.01, T:0.49
Consensus pattern (21 bp):
TTCTCTCAATTTCCTCTCAAT
Found at i:25795648 original size:11 final size:11
Alignment explanation
Indices: 25795585--25795646 Score: 81
Period size: 11 Copynumber: 5.6 Consensus size: 11
25795575 CTCTAATATT
*
25795585 CTCTTAATTTC
1 CTCTCAATTTC
25795596 CTCTCAATTTC
1 CTCTCAATTTC
*
25795607 CTCTCAATTTG
1 CTCTCAATTTC
25795618 CTCTCAATTTC
1 CTCTCAATTTC
*
25795629 CTTTCAAATTT-
1 CTCTC-AATTTC
25795640 CTCTCAA
1 CTCTCAA
25795647 ATCCCTATTT
Statistics
Matches: 45, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
10 2 0.04
11 38 0.84
12 5 0.11
ACGTcount: A:0.21, C:0.31, G:0.02, T:0.47
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:25796825 original size:7 final size:7
Alignment explanation
Indices: 25796813--25796838 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
25796803 TAGTTGATTG
25796813 GTATTTA
1 GTATTTA
25796820 GTATTTA
1 GTATTTA
25796827 GTATTTA
1 GTATTTA
25796834 GTATT
1 GTATT
25796839 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:25799944 original size:126 final size:126
Alignment explanation
Indices: 25799719--25800142 Score: 722
Period size: 126 Copynumber: 3.4 Consensus size: 126
25799709 ACATGAGAGC
*
25799719 TTTTTTCAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGA
1 TTTTTTCAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCAGTACTTCTGCTGA
*
25799784 CAAAGCATCATACTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTA
66 CAAAGCATCCTACTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTA
* *
25799845 TTTTTTCAGGAGATACTGTAGCAAAAGCGCGTCCATGTGGGAGCTTTTTTCAGTACTTCTGCTGA
1 TTTTTTCAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCAGTACTTCTGCTGA
* *
25799910 CAAAGCATCCTGCTTAAAGCGTTTTTGACACTGTTTACTCAGAAACGTCTACTCGAAATTA
66 CAAAGCATCCTACTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTA
*
25799971 TTTTTTCAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGAGAGCTTTTTTCAGTACTTCTGCTGA
1 TTTTTTCAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCAGTACTTCTGCTGA
** *
25800036 CAAAATATCCTACTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTA
66 CAAAGCATCCTACTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTA
* * * *
25800097 TTTTCTCAAGAGCCACTGTACCAAAAGCGCGTCCACGTGGGAGCTT
1 TTTTTTCAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTT
25800143 CTTTAAATTA
Statistics
Matches: 279, Mismatches: 19, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
126 279 1.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (126 bp):
TTTTTTCAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTTTTTCAGTACTTCTGCTGA
CAAAGCATCCTACTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTA
Found at i:25800240 original size:51 final size:51
Alignment explanation
Indices: 25800176--25800295 Score: 213
Period size: 51 Copynumber: 2.4 Consensus size: 51
25800166 TCAAGTAACC
* *
25800176 CTAAACCCCAAACCCTAATTTATTTAAGTTTTTACTTAAAAACTCTAAACT
1 CTAAACACTAAACCCTAATTTATTTAAGTTTTTACTTAAAAACTCTAAACT
*
25800227 CTAAACACTAAACCCTAATTTATTTAATTTTTTACTTAAAAACTCTAAACT
1 CTAAACACTAAACCCTAATTTATTTAAGTTTTTACTTAAAAACTCTAAACT
25800278 CTAAACACTAAACCCTAA
1 CTAAACACTAAACCCTAA
25800296 ACTAATTTAT
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.42, C:0.23, G:0.01, T:0.34
Consensus pattern (51 bp):
CTAAACACTAAACCCTAATTTATTTAAGTTTTTACTTAAAAACTCTAAACT
Found at i:25800360 original size:46 final size:45
Alignment explanation
Indices: 25800288--25800456 Score: 139
Period size: 46 Copynumber: 3.6 Consensus size: 45
25800278 CTAAACACTA
*
25800288 AACCCTAAA--CTAATTTATTATAAATTTGTAATTAATTTACTCAAGT
1 AACCCTAAACCCTAATTTATT-T-AATTTTTAATTAA-TTACTCAAGT
** * * **
25800334 AACCCTAAACCCTAATTTATTTAATTTTTCCTTAA-AAATC-TTT
1 AACCCTAAACCCTAATTTATTTAATTTTTAATTAATTACTCAAGT
*
25800377 AACTCTAAACCCTAATTTAATTTTTAATTTTTTTAATTAAATTACTCAAGT
1 AACCCTAAACCCTAATTT-A--TTTAA--TTTTTAATT-AATTACTCAAGT
* *
25800428 AACCCTAAACCCTAATTTAATTGATTTTT
1 AACCCTAAACCCTAATTTATTTAATTTTT
25800457 TCTTAAAAAA
Statistics
Matches: 96, Mismatches: 17, Indels: 20
0.72 0.13 0.15
Matches are distributed among these distances:
43 18 0.19
44 4 0.04
46 29 0.30
47 1 0.01
48 20 0.21
49 2 0.02
50 4 0.04
51 18 0.19
ACGTcount: A:0.37, C:0.17, G:0.02, T:0.44
Consensus pattern (45 bp):
AACCCTAAACCCTAATTTATTTAATTTTTAATTAATTACTCAAGT
Found at i:25800427 original size:94 final size:100
Alignment explanation
Indices: 25800234--25800465 Score: 287
Period size: 94 Copynumber: 2.3 Consensus size: 100
25800224 ACTCTAAACA
25800234 CTAAACCCTAATTTATTTAATTTTTTACTTAAAAACTCTAAACTCTAAACACTAAACCCTAAACT
1 CTAAACCCTAATTTATTTAA-TTTTTACTTAAAAACTCT--A-TCTAAACACTAAACCCTAAACT
*
25800299 AATTTATTATAAATTTGTAATTAATTTACTCAAGTAACC
62 AATTTATTATAAATTTGTAATTAAATTACTCAAGTAACC
* * **
25800338 CTAAACCCTAATTTATTTAATTTTTCCTTAAAAA-TCT-T-T-AACTCTAAACCCTAATTTAATT
1 CTAAACCCTAATTTATTTAATTTTTACTTAAAAACTCTATCTAAACACTAAACCCTAAACTAATT
** *
25800399 T-TTA-ATTTTTTTAATTAAATTACTCAAGTAACC
66 TATTATAAATTTGTAATTAAATTACTCAAGTAACC
* * *
25800432 CTAAACCCTAATTTAATTGATTTTTTCTTAAAAA
1 CTAAACCCTAATTTATTTAATTTTTACTTAAAAA
25800466 ATAATAAACA
Statistics
Matches: 117, Mismatches: 11, Indels: 10
0.85 0.08 0.07
Matches are distributed among these distances:
94 56 0.48
95 3 0.03
96 20 0.17
97 1 0.01
98 1 0.01
102 3 0.03
103 13 0.11
104 20 0.17
ACGTcount: A:0.39, C:0.17, G:0.02, T:0.42
Consensus pattern (100 bp):
CTAAACCCTAATTTATTTAATTTTTACTTAAAAACTCTATCTAAACACTAAACCCTAAACTAATT
TATTATAAATTTGTAATTAAATTACTCAAGTAACC
Found at i:25800447 original size:51 final size:52
Alignment explanation
Indices: 25800316--25800449 Score: 155
Period size: 51 Copynumber: 2.8 Consensus size: 52
25800306 TATAAATTTG
*
25800316 TAATTAATTTACTCAAGTAACCCTAAACCCTAATTT-A--TTTAATTTTTCCT
1 TAATTAAATTACTCAAGTAACCCTAAACCCTAATTTAATTTTTAATTTTT-CT
* *
25800366 TAA--AAA-T-CT---TTAACTCTAAACCCTAATTTAATTTTTAATTTTT-T
1 TAATTAAATTACTCAAGTAACCCTAAACCCTAATTTAATTTTTAATTTTTCT
25800410 TAATTAAATTACTCAAGTAACCCTAAACCCTAATTTAATT
1 TAATTAAATTACTCAAGTAACCCTAAACCCTAATTTAATT
25800450 GATTTTTTCT
Statistics
Matches: 69, Mismatches: 5, Indels: 19
0.74 0.05 0.20
Matches are distributed among these distances:
43 18 0.26
44 5 0.07
46 15 0.22
47 2 0.03
48 4 0.06
50 3 0.04
51 22 0.32
ACGTcount: A:0.37, C:0.18, G:0.01, T:0.43
Consensus pattern (52 bp):
TAATTAAATTACTCAAGTAACCCTAAACCCTAATTTAATTTTTAATTTTTCT
Found at i:25800486 original size:94 final size:94
Alignment explanation
Indices: 25800316--25800486 Score: 229
Period size: 94 Copynumber: 1.8 Consensus size: 94
25800306 TATAAATTTG
* * ** *
25800316 TAATTAATTTACTCAAGTAACCCTAAACCCTAATTTATTTAATTTTTCCTTAAAAATCTTTAACT
1 TAATTAAATTACTCAAGTAACCCTAAACCCTAATTTAATTAATTTTTCCTTAAAAATAATAAACT
* *
25800381 CTAAACCCTAATTTAATTTTTAATTTTTT
66 CGAAACACTAATTTAATTTTTAATTTTTT
* *
25800410 TAATTAAATTACTCAAGTAACCCTAAACCCTAATTTAATTGATTTTTTCTTAAAAAATAATAAAC
1 TAATTAAATTACTCAAGTAACCCTAAACCCTAATTTAATTAATTTTTCCTT-AAAAATAATAAAC
25800475 AT-GAAA-ACTAAT
65 -TCGAAACACTAAT
25800487 CCAATTTTGA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
94 52 0.79
95 13 0.20
96 1 0.02
ACGTcount: A:0.40, C:0.16, G:0.02, T:0.42
Consensus pattern (94 bp):
TAATTAAATTACTCAAGTAACCCTAAACCCTAATTTAATTAATTTTTCCTTAAAAATAATAAACT
CGAAACACTAATTTAATTTTTAATTTTTT
Found at i:25804311 original size:17 final size:17
Alignment explanation
Indices: 25804289--25804348 Score: 111
Period size: 17 Copynumber: 3.5 Consensus size: 17
25804279 ATAGATAATC
25804289 GGAAGCTCGACCGGTTT
1 GGAAGCTCGACCGGTTT
25804306 GGAAGCTCGACCGGTTT
1 GGAAGCTCGACCGGTTT
*
25804323 GGAAGCTCGACTGGTTT
1 GGAAGCTCGACCGGTTT
25804340 GGAAGCTCG
1 GGAAGCTCG
25804349 TCGGTGATCT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
17 42 1.00
ACGTcount: A:0.18, C:0.22, G:0.37, T:0.23
Consensus pattern (17 bp):
GGAAGCTCGACCGGTTT
Found at i:25810960 original size:979 final size:979
Alignment explanation
Indices: 25809063--25811025 Score: 3829
Period size: 979 Copynumber: 2.0 Consensus size: 979
25809053 AATACCACCT
25809063 TTTTCCATAAACGAAAAATAAAGCATAATCGGATATATACCCTAAAAAATAAAGATGGTGAGTGA
1 TTTTCCATAAACGAAAAATAAAGCATAATCGGATATATACCCTAAAAAATAAAGATGGTGAGTGA
**
25809128 CTCTTTAAAAAAGTTGATCTATAGTTGGAGGCAATGTGATTCTTCTAGAAATTGTATGGGAAGCA
66 CTCTTTAAAAAAGTTGATCTATAGTTGGAGGCAATGAAATTCTTCTAGAAATTGTATGGGAAGCA
25809193 TCCTGTTGGTATGATTAATTTATCAGTTAGTAATTTCCCAAGGCTTGATCATAGTGATCTTCTTT
131 TCCTGTTGGTATGATTAATTTATCAGTTAGTAATTTCCCAAGGCTTGATCATAGTGATCTTCTTT
25809258 TGAGCAAGGAGGTTTTGGTGGATGAGATTAATATCGCACTGTTTGACATGTCTACGTTGAAAGCC
196 TGAGCAAGGAGGTTTTGGTGGATGAGATTAATATCGCACTGTTTGACATGTCTACGTTGAAAGCC
25809323 TCGAGAAGTGATGGTTTTCATGCTTTTTTCTTCCATAGCCTTTGGGGTGTGGTTGGTGAAGCTGT
261 TCGAGAAGTGATGGTTTTCATGCTTTTTTCTTCCATAGCCTTTGGGGTGTGGTTGGTGAAGCTGT
25809388 TTGCAAGTAGGTTCAAAGGGGTGTTTGCTGACAAGCTATCAAGCCGAAGCTGAATAATACTCTAA
326 TTGCAAGTAGGTTCAAAGGGGTGTTTGCTGACAAGCTATCAAGCCGAAGCTGAATAATACTCTAA
25809453 TTGTCTTCATCCCTAAAGTGATTAGCCCTGAGATATTTTCCCATTTTTGACCTATTAATTTATGC
391 TTGTCTTCATCCCTAAAGTGATTAGCCCTGAGATATTTTCCCATTTTTGACCTATTAATTTATGC
25809518 ACAGTTCTATACAAATTGATTATGAAGGTGATAGTAAACCGCTTCAGAGTTATTTTCCCTAAAAT
456 ACAGTTCTATACAAATTGATTATGAAGGTGATAGTAAACCGCTTCAGAGTTATTTTCCCTAAAAT
*
25809583 CATTACTCCTAAGCAAGTTAGATTCATAGTAGGTCGGAACACCACATATAATGTTATTATACTCA
521 CATTACTCCTAAGCAAGTTAGATTCATAGTAGGTCGGAACACCACATATAATGTTATTAGACTCA
25809648 AGAAGTGATCCATTCCATGAGAAGTAAACTGAAGAGTAAAAAGTGGATGGCTATTAAAATTGATA
586 AGAAGTGATCCATTCCATGAGAAGTAAACTGAAGAGTAAAAAGTGGATGGCTATTAAAATTGATA
25809713 TTGAGAAGACTTATGATAAGGTCAGTTGAGACTTTATTGATCCTTCTCTGAAAGCTGTAGGTATC
651 TTGAGAAGACTTATGATAAGGTCAGTTGAGACTTTATTGATCCTTCTCTGAAAGCTGTAGGTATC
25809778 CTGATTTTCTTCACAATGTTATTATATCTTCTATTACAGGTTTTACTTTGAAATTTTTGTGGAAT
716 CTGATTTTCTTCACAATGTTATTATATCTTCTATTACAGGTTTTACTTTGAAATTTTTGTGGAAT
25809843 GGAGTCCCAACATAGAAGTTTCGATCGGCAAGAGGAATTCGTTAGGGATGCCCTTTATCACCATA
781 GGAGTCCCAACATAGAAGTTTCGATCGGCAAGAGGAATTCGTTAGGGATGCCCTTTATCACCATA
25809908 TCTTTTTGTCTTTTGTATGGAGTGGCTCGGGCATAGTATTCGATCAACTATTATTTCAGGCTTAT
846 TCTTTTTGTCTTTTGTATGGAGTGGCTCGGGCATAGTATTCGATCAACTATTATTTCAGGCTTAT
25809973 GGAGACCCGCTCGGTTATCTCGGTCAGGTCCAGAGTTGTCTCATTTATCTTTCGCTGATGATCTG
911 GGAGACCCGCTCGGTTATCTCGGTCAGGTCCAGAGTTGTCTCATTTATCTTTCGCTGATGATCTG
25810038 GTTA
976 GTTA
* *
25810042 TTTTCCATAGACGAAAAATAAAGCATAATCGGATATATACCCTAAAAAATAAAGATGGTGAGTGG
1 TTTTCCATAAACGAAAAATAAAGCATAATCGGATATATACCCTAAAAAATAAAGATGGTGAGTGA
25810107 CTCTTTAAAAAAGTTGATCTATAGTTGGAGGCAATGAAATTCTTCTAGAAATTGTATGGGAAGCA
66 CTCTTTAAAAAAGTTGATCTATAGTTGGAGGCAATGAAATTCTTCTAGAAATTGTATGGGAAGCA
25810172 TCCTGTTGGTATGATTAATTTATCAGTTAGTAATTTCCCAAGGCTTGATCATAGTGATCTTCTTT
131 TCCTGTTGGTATGATTAATTTATCAGTTAGTAATTTCCCAAGGCTTGATCATAGTGATCTTCTTT
25810237 TGAGCAAGGAGGTTTTGGTGGATGAGATTAATATCGCACTGTTTGACATGTCTACGTTGAAAGCC
196 TGAGCAAGGAGGTTTTGGTGGATGAGATTAATATCGCACTGTTTGACATGTCTACGTTGAAAGCC
25810302 TCGAGAAGTGATGGTTTTCATGCTTTTTTCTTCCATAGCCTTTGGGGTGTGGTTGGTGAAGCTGT
261 TCGAGAAGTGATGGTTTTCATGCTTTTTTCTTCCATAGCCTTTGGGGTGTGGTTGGTGAAGCTGT
25810367 TTGCAAGTAGGTTCAAA-GGGTGTTTGCTGGACAAGCTATCAAGCCGAAGCTGAATAATACTCTA
326 TTGCAAGTAGGTTCAAAGGGGTGTTTGCT-GACAAGCTATCAAGCCGAAGCTGAATAATACTCTA
25810431 ATTGTCTTCATCCCTAAAGTGATTAGCCCTGAGATATTTTCCCATTTTTGACCTATTAATTTATG
390 ATTGTCTTCATCCCTAAAGTGATTAGCCCTGAGATATTTTCCCATTTTTGACCTATTAATTTATG
25810496 CACAGTTCTATACAAATTGATTATGAAGGTGATAGTAAACCGCTTCAGAGTTATTTTCCCTAAAA
455 CACAGTTCTATACAAATTGATTATGAAGGTGATAGTAAACCGCTTCAGAGTTATTTTCCCTAAAA
*
25810561 TCATTACTCCTAAGCAAGTTAGATTCATAGTAGGTCGGAACACCACATATAATGTTATTAGACTG
520 TCATTACTCCTAAGCAAGTTAGATTCATAGTAGGTCGGAACACCACATATAATGTTATTAGACTC
25810626 AAGAAGTGATCCATTCCATGAGAAGTAAACTGAAGAGTAAAAAGTGGATGGCTATTAAAATTGAT
585 AAGAAGTGATCCATTCCATGAGAAGTAAACTGAAGAGTAAAAAGTGGATGGCTATTAAAATTGAT
*
25810691 ATTGAGAAGACTTATGATAAGGTCAGTTGAGACTTTATTGATGCTTCTCTGAAAGCTGTAGGTAT
650 ATTGAGAAGACTTATGATAAGGTCAGTTGAGACTTTATTGATCCTTCTCTGAAAGCTGTAGGTAT
25810756 CCTGATTTTCTTCACAATGTTATTATATCTTCTATTACAGGTTTTACTTTGAAATTTTTGTGGAA
715 CCTGATTTTCTTCACAATGTTATTATATCTTCTATTACAGGTTTTACTTTGAAATTTTTGTGGAA
* *
25810821 TGGAGTCCCAACATAGAAGTTTCGATTGGCAAGAGGAATTCGTTAGGGGTGCCCTTTATCACCAT
780 TGGAGTCCCAACATAGAAGTTTCGATCGGCAAGAGGAATTCGTTAGGGATGCCCTTTATCACCAT
25810886 ATCTTTTTGTCTTTTGTATGGAGTGGCTCGGGCATAGTATTCGATCAACTATTATTTCAGGCTTA
845 ATCTTTTTGTCTTTTGTATGGAGTGGCTCGGGCATAGTATTCGATCAACTATTATTTCAGGCTTA
25810951 TGGAGACCCGCTCGGTTATCTCGGTCAGGTCCAGAGTTGTCTCATTTATCTTTCGCTGATGATCT
910 TGGAGACCCGCTCGGTTATCTCGGTCAGGTCCAGAGTTGTCTCATTTATCTTTCGCTGATGATCT
25811016 GGTTA
975 GGTTA
25811021 TTTTC
1 TTTTC
25811026 GGTCATGCAA
Statistics
Matches: 974, Mismatches: 9, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
978 11 0.01
979 963 0.99
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35
Consensus pattern (979 bp):
TTTTCCATAAACGAAAAATAAAGCATAATCGGATATATACCCTAAAAAATAAAGATGGTGAGTGA
CTCTTTAAAAAAGTTGATCTATAGTTGGAGGCAATGAAATTCTTCTAGAAATTGTATGGGAAGCA
TCCTGTTGGTATGATTAATTTATCAGTTAGTAATTTCCCAAGGCTTGATCATAGTGATCTTCTTT
TGAGCAAGGAGGTTTTGGTGGATGAGATTAATATCGCACTGTTTGACATGTCTACGTTGAAAGCC
TCGAGAAGTGATGGTTTTCATGCTTTTTTCTTCCATAGCCTTTGGGGTGTGGTTGGTGAAGCTGT
TTGCAAGTAGGTTCAAAGGGGTGTTTGCTGACAAGCTATCAAGCCGAAGCTGAATAATACTCTAA
TTGTCTTCATCCCTAAAGTGATTAGCCCTGAGATATTTTCCCATTTTTGACCTATTAATTTATGC
ACAGTTCTATACAAATTGATTATGAAGGTGATAGTAAACCGCTTCAGAGTTATTTTCCCTAAAAT
CATTACTCCTAAGCAAGTTAGATTCATAGTAGGTCGGAACACCACATATAATGTTATTAGACTCA
AGAAGTGATCCATTCCATGAGAAGTAAACTGAAGAGTAAAAAGTGGATGGCTATTAAAATTGATA
TTGAGAAGACTTATGATAAGGTCAGTTGAGACTTTATTGATCCTTCTCTGAAAGCTGTAGGTATC
CTGATTTTCTTCACAATGTTATTATATCTTCTATTACAGGTTTTACTTTGAAATTTTTGTGGAAT
GGAGTCCCAACATAGAAGTTTCGATCGGCAAGAGGAATTCGTTAGGGATGCCCTTTATCACCATA
TCTTTTTGTCTTTTGTATGGAGTGGCTCGGGCATAGTATTCGATCAACTATTATTTCAGGCTTAT
GGAGACCCGCTCGGTTATCTCGGTCAGGTCCAGAGTTGTCTCATTTATCTTTCGCTGATGATCTG
GTTA
Found at i:25811581 original size:365 final size:365
Alignment explanation
Indices: 25810911--25811640 Score: 1460
Period size: 365 Copynumber: 2.0 Consensus size: 365
25810901 GTATGGAGTG
25810911 GCTCGGGCATAGTATTCGATCAACTATTATTTCAGGCTTATGGAGACCCGCTCGGTTATCTCGGT
1 GCTCGGGCATAGTATTCGATCAACTATTATTTCAGGCTTATGGAGACCCGCTCGGTTATCTCGGT
25810976 CAGGTCCAGAGTTGTCTCATTTATCTTTCGCTGATGATCTGGTTATTTTCGGTCATGCAAATATT
66 CAGGTCCAGAGTTGTCTCATTTATCTTTCGCTGATGATCTGGTTATTTTCGGTCATGCAAATATT
25811041 GGACAGGCTAGAAGGATTAAAACTATCTTGGAGGAGTTTTATGATTTTTCTAGTCATAAAATTAA
131 GGACAGGCTAGAAGGATTAAAACTATCTTGGAGGAGTTTTATGATTTTTCTAGTCATAAAATTAA
25811106 TGCGGGGAAGACAAATTTATTTTTCTCCAATAGGGTTGATGAGGATTTAAATAAACGTATTGGAG
196 TGCGGGGAAGACAAATTTATTTTTCTCCAATAGGGTTGATGAGGATTTAAATAAACGTATTGGAG
25811171 GTATCCTTGGCTTTCAAACAGTGACAGATCTTAATACATACTTGGGAGTACCCATTTTCATGAAA
261 GTATCCTTGGCTTTCAAACAGTGACAGATCTTAATACATACTTGGGAGTACCCATTTTCATGAAA
25811236 GGGTAACTAACAACACCCTAAGGTTTGTTGTTGACATGGC
326 GGGTAACTAACAACACCCTAAGGTTTGTTGTTGACATGGC
25811276 GCTCGGGCATAGTATTCGATCAACTATTATTTCAGGCTTATGGAGACCCGCTCGGTTATCTCGGT
1 GCTCGGGCATAGTATTCGATCAACTATTATTTCAGGCTTATGGAGACCCGCTCGGTTATCTCGGT
25811341 CAGGTCCAGAGTTGTCTCATTTATCTTTCGCTGATGATCTGGTTATTTTCGGTCATGCAAATATT
66 CAGGTCCAGAGTTGTCTCATTTATCTTTCGCTGATGATCTGGTTATTTTCGGTCATGCAAATATT
25811406 GGACAGGCTAGAAGGATTAAAACTATCTTGGAGGAGTTTTATGATTTTTCTAGTCATAAAATTAA
131 GGACAGGCTAGAAGGATTAAAACTATCTTGGAGGAGTTTTATGATTTTTCTAGTCATAAAATTAA
25811471 TGCGGGGAAGACAAATTTATTTTTCTCCAATAGGGTTGATGAGGATTTAAATAAACGTATTGGAG
196 TGCGGGGAAGACAAATTTATTTTTCTCCAATAGGGTTGATGAGGATTTAAATAAACGTATTGGAG
25811536 GTATCCTTGGCTTTCAAACAGTGACAGATCTTAATACATACTTGGGAGTACCCATTTTCATGAAA
261 GTATCCTTGGCTTTCAAACAGTGACAGATCTTAATACATACTTGGGAGTACCCATTTTCATGAAA
25811601 GGGTAACTAACAACACCCTAAGGTTTGTTGTTGACATGGC
326 GGGTAACTAACAACACCCTAAGGTTTGTTGTTGACATGGC
25811641 TCGAAGCAAG
Statistics
Matches: 365, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
365 365 1.00
ACGTcount: A:0.28, C:0.16, G:0.22, T:0.34
Consensus pattern (365 bp):
GCTCGGGCATAGTATTCGATCAACTATTATTTCAGGCTTATGGAGACCCGCTCGGTTATCTCGGT
CAGGTCCAGAGTTGTCTCATTTATCTTTCGCTGATGATCTGGTTATTTTCGGTCATGCAAATATT
GGACAGGCTAGAAGGATTAAAACTATCTTGGAGGAGTTTTATGATTTTTCTAGTCATAAAATTAA
TGCGGGGAAGACAAATTTATTTTTCTCCAATAGGGTTGATGAGGATTTAAATAAACGTATTGGAG
GTATCCTTGGCTTTCAAACAGTGACAGATCTTAATACATACTTGGGAGTACCCATTTTCATGAAA
GGGTAACTAACAACACCCTAAGGTTTGTTGTTGACATGGC
Found at i:25814799 original size:18 final size:18
Alignment explanation
Indices: 25814776--25814810 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
25814766 TAGAAAATAC
25814776 TTTTAT-ATTAATATTTAT
1 TTTTATAATTAA-ATTTAT
25814794 TTTTATAATTAAATTTA
1 TTTTATAATTAAATTTA
25814811 ATATAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTATAATTAAATTTAT
Found at i:25816039 original size:13 final size:13
Alignment explanation
Indices: 25816021--25816057 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
25816011 TTTAAATCAA
25816021 ACTTTTCAAAACT
1 ACTTTTCAAAACT
*
25816034 ACTTTTCAAAAGT
1 ACTTTTCAAAACT
*
25816047 ACTTTCCAAAA
1 ACTTTTCAAAA
25816058 ACAATATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.41, C:0.22, G:0.03, T:0.35
Consensus pattern (13 bp):
ACTTTTCAAAACT
Found at i:25816212 original size:7 final size:7
Alignment explanation
Indices: 25816202--25816226 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
25816192 AATCGAAAAA
25816202 AATTTCG
1 AATTTCG
25816209 AATTTCG
1 AATTTCG
25816216 AATTTCG
1 AATTTCG
25816223 AATT
1 AATT
25816227 ATTCGAATCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (7 bp):
AATTTCG
Found at i:25816271 original size:18 final size:18
Alignment explanation
Indices: 25816237--25816271 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
25816227 ATTCGAATCG
* *
25816237 AGTTAATCGAGTTAATTA
1 AGTTAATCGAATCAATTA
25816255 AGTTAATCGAATCAATT
1 AGTTAATCGAATCAATT
25816272 CGAATTTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.37
Consensus pattern (18 bp):
AGTTAATCGAATCAATTA
Found at i:25816331 original size:9 final size:9
Alignment explanation
Indices: 25816317--25816363 Score: 94
Period size: 9 Copynumber: 5.2 Consensus size: 9
25816307 TGAATTTTCG
25816317 AATTCGAAT
1 AATTCGAAT
25816326 AATTCGAAT
1 AATTCGAAT
25816335 AATTCGAAT
1 AATTCGAAT
25816344 AATTCGAAT
1 AATTCGAAT
25816353 AATTCGAAT
1 AATTCGAAT
25816362 AA
1 AA
25816364 AAACTATATT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 38 1.00
ACGTcount: A:0.47, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:25816411 original size:27 final size:27
Alignment explanation
Indices: 25816373--25816425 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
25816363 AAAACTATAT
*
25816373 TTTTTTATTTTTAAAATACACCACATA
1 TTTTTTATTTTTAAAAAACACCACATA
*
25816400 TTTTTTATTTTTAAAAAACACTACAT
1 TTTTTTATTTTTAAAAAACACCACAT
25816426 TTAAAAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (27 bp):
TTTTTTATTTTTAAAAAACACCACATA
Found at i:25817824 original size:19 final size:19
Alignment explanation
Indices: 25817800--25817838 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
25817790 ATATTTGTAT
25817800 GTAACTTTCTTGAATTAAA
1 GTAACTTTCTTGAATTAAA
25817819 GTAACTTTCTTGAATTAAA
1 GTAACTTTCTTGAATTAAA
25817838 G
1 G
25817839 CATGTAATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.10, G:0.13, T:0.41
Consensus pattern (19 bp):
GTAACTTTCTTGAATTAAA
Found at i:25818720 original size:19 final size:19
Alignment explanation
Indices: 25818673--25818710 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
25818663 TTTTTGTATT
* *
25818673 AATTTTGTTGTTTATTTGG
1 AATTATGTTGCTTATTTGG
25818692 AATTATGTTGCTTATTTGG
1 AATTATGTTGCTTATTTGG
25818711 GTTGATGTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.18, C:0.03, G:0.21, T:0.58
Consensus pattern (19 bp):
AATTATGTTGCTTATTTGG
Found at i:25819080 original size:22 final size:23
Alignment explanation
Indices: 25819055--25819099 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
25819045 TCCTTAGATA
25819055 TTAATT-TTTTAAGTAATAATTT
1 TTAATTGTTTTAAGTAATAATTT
**
25819077 TTAATTGTTTTATTTAATAATTT
1 TTAATTGTTTTAAGTAATAATTT
25819100 CATATAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (23 bp):
TTAATTGTTTTAAGTAATAATTT
Found at i:25824289 original size:4 final size:4
Alignment explanation
Indices: 25824280--25824308 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
25824270 TGCATTGAGC
25824280 ACAA ACAA ACAA ACAA ACAA ACAA A-AA AC
1 ACAA ACAA ACAA ACAA ACAA ACAA ACAA AC
25824309 CATCTTGGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
3 3 0.12
4 21 0.88
ACGTcount: A:0.76, C:0.24, G:0.00, T:0.00
Consensus pattern (4 bp):
ACAA
Found at i:25825156 original size:13 final size:13
Alignment explanation
Indices: 25825115--25825158 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
25825105 AGTCAAATAA
25825115 AAATAATTAAGA-
1 AAATAATTAAGAT
* *
25825127 AAGTAATTAAAAT
1 AAATAATTAAGAT
*
25825140 AAATAACTAAGAT
1 AAATAATTAAGAT
25825153 AAATAA
1 AAATAA
25825159 AATAGAACAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
12 10 0.38
13 16 0.62
ACGTcount: A:0.66, C:0.02, G:0.07, T:0.25
Consensus pattern (13 bp):
AAATAATTAAGAT
Found at i:25828373 original size:67 final size:68
Alignment explanation
Indices: 25828283--25828418 Score: 204
Period size: 67 Copynumber: 2.0 Consensus size: 68
25828273 ACAACATGCC
* *
25828283 AACAACAATTTAAGCACTCCAATACCTCATCCT-ACCTTAAATCAATACTTTTTTACTATAAGCT
1 AACAACAATTTAAGCACTCCAATACCTCAT-CTAACCTTAAATCAATAATTTATTACTATAAGCT
25828347 AATT
65 AATT
* * *
25828351 AACATCAATTTAA-CACTCCAATACTTCATGTAACCTTAAATCAATAATTTATTACTATAAGCTA
1 AACAACAATTTAAGCACTCCAATACCTCATCTAACCTTAAATCAATAATTTATTACTATAAGCTA
25828415 ATT
66 ATT
25828418 A
1 A
25828419 CCTATTGTAT
Statistics
Matches: 62, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
66 1 0.02
67 49 0.79
68 12 0.19
ACGTcount: A:0.40, C:0.22, G:0.03, T:0.35
Consensus pattern (68 bp):
AACAACAATTTAAGCACTCCAATACCTCATCTAACCTTAAATCAATAATTTATTACTATAAGCTA
ATT
Found at i:25842186 original size:24 final size:25
Alignment explanation
Indices: 25842159--25842206 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
25842149 TAAAAAATAT
*
25842159 AATAAA-ATGAAAAATTAATTAAAC
1 AATAAACATGAAAAATAAATTAAAC
*
25842183 AATAAACATTAAAAATAAATTAAA
1 AATAAACATGAAAAATAAATTAAA
25842207 AAATCTAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.25
Consensus pattern (25 bp):
AATAAACATGAAAAATAAATTAAAC
Found at i:25842397 original size:14 final size:16
Alignment explanation
Indices: 25842367--25842398 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
25842357 AAATTTGAAA
25842367 TTTTATTGTTATGTCT
1 TTTTATTGTTATGTCT
25842383 TTTTATT-TT-TGTCT
1 TTTTATTGTTATGTCT
25842397 TT
1 TT
25842399 CGTATTTTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 2 0.12
16 7 0.44
ACGTcount: A:0.09, C:0.06, G:0.09, T:0.75
Consensus pattern (16 bp):
TTTTATTGTTATGTCT
Found at i:25847445 original size:50 final size:50
Alignment explanation
Indices: 25847328--25847561 Score: 206
Period size: 50 Copynumber: 4.6 Consensus size: 50
25847318 ACATTCAAAA
* * * *
25847328 CCATGTCCCAGACATGGTCTTACATGGGA-TGTTTCTTGTAC--TGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGAGACT-TCTCATAT-CGGTGCCAATG
* * * *
25847377 CCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATCGGTGCCTATG
1 CCATGTCCCAGACATGGTCTTACATGAGACTTCTCATATCGGTGCCAATG
* * * * * *
25847427 CCATGTCCTAGACATGGTCTTACAGGGGACCTCTCATCTAGGTGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGAGACTTCTCATATCGGTGCCAATG
* * *
25847477 CCATGTCCCAAACATGGTCTTACA-AAGGACTTCTCATAATCTCAATGATGCCAATG
1 CCATGTCCCAGACATGGTCTTACATGA-GACTTCTCAT-A--TC---GGTGCCAATG
25847533 CCATGTCCCAGACATGGTCTTACATGAGA
1 CCATGTCCCAGACATGGTCTTACATGAGA
25847562 TCTCTTTACC
Statistics
Matches: 147, Mismatches: 27, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
48 1 0.01
49 31 0.21
50 79 0.54
53 1 0.01
56 34 0.23
57 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (50 bp):
CCATGTCCCAGACATGGTCTTACATGAGACTTCTCATATCGGTGCCAATG
Found at i:25847511 original size:100 final size:102
Alignment explanation
Indices: 25847328--25847556 Score: 250
Period size: 100 Copynumber: 2.2 Consensus size: 102
25847318 ACATTCAAAA
* ** * * * * *
25847328 CCATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTACTGCCAATGCCATATCCCAGATATG
1 CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTACTGCCAATGCCATATCCCAAACATG
* * * *
25847393 GTCTTACATGAGAGTTCTCAT-A-TC-GGTGCCTATG
66 GTCTTACAAGAGACTTCTCATAACTCAGATGCCAATG
* * *
25847427 CCATGTCCTAGACATGGTCTTACAGGGGACCTCTCATCTAGGTGCCAATGCCATGTCCCAAACAT
1 CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTA-CTGCCAATGCCATATCCCAAACAT
25847492 GGTCTTACAA-AGGACTTCTCATAATCTCAATGATGCCAATG
65 GGTCTTACAAGA-GACTTCTCATAA-CTC-A-GATGCCAATG
25847533 CCATGTCCCAGACATGGTCTTACA
1 CCATGTCCCAGACATGGTCTTACA
25847557 TGAGATCTCT
Statistics
Matches: 106, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
99 34 0.32
100 38 0.36
101 1 0.01
103 2 0.02
106 31 0.29
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.29
Consensus pattern (102 bp):
CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTACTGCCAATGCCATATCCCAAACATG
GTCTTACAAGAGACTTCTCATAACTCAGATGCCAATG
Found at i:25849602 original size:25 final size:25
Alignment explanation
Indices: 25849574--25849622 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
25849564 AGTTGCCTGA
* *
25849574 AAAGCCTATGTGGTGTATTATTTGG
1 AAAGCCTACGTGGCGTATTATTTGG
25849599 AAAGCCTACGTGGCGTATTATTTG
1 AAAGCCTACGTGGCGTATTATTTG
25849623 AAAAACCTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.24, C:0.12, G:0.27, T:0.37
Consensus pattern (25 bp):
AAAGCCTACGTGGCGTATTATTTGG
Found at i:25849637 original size:25 final size:25
Alignment explanation
Indices: 25849571--25849630 Score: 75
Period size: 25 Copynumber: 2.4 Consensus size: 25
25849561 GTGAGTTGCC
* * *
25849571 TGAAAAGCCTATGTGGTGTATTATT
1 TGAAAAACCTACGTGGCGTATTATT
* *
25849596 TGGAAAGCCTACGTGGCGTATTATT
1 TGAAAAACCTACGTGGCGTATTATT
25849621 TGAAAAACCT
1 TGAAAAACCT
25849631 TAGTGGCAAG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.30, C:0.13, G:0.23, T:0.33
Consensus pattern (25 bp):
TGAAAAACCTACGTGGCGTATTATT
Found at i:25856937 original size:15 final size:16
Alignment explanation
Indices: 25856917--25856950 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
25856907 TTCCCAAACC
*
25856917 TATTCGTT-TGTGAAT
1 TATTCGTTAAGTGAAT
25856932 TATTCGTTAAGTGAAT
1 TATTCGTTAAGTGAAT
25856948 TAT
1 TAT
25856951 GCTTGGACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.26, C:0.06, G:0.18, T:0.50
Consensus pattern (16 bp):
TATTCGTTAAGTGAAT
Found at i:25858295 original size:45 final size:45
Alignment explanation
Indices: 25858145--25858319 Score: 199
Period size: 45 Copynumber: 3.9 Consensus size: 45
25858135 ATGCTTTCAT
* * *
25858145 ATGATGCCATAACATCTTTTAGCTATGGTCTTACTCATTTTAATC
1 ATGACGCCATAACATCTTTCAGCTATGGTCTTACTCATTTTTATC
** * * * **
25858190 ATGACGCTGTATCCTCCTTCAATTATGGTCTTACTCA-TTTTATC
1 ATGACGCCATAACATCTTTCAGCTATGGTCTTACTCATTTTTATC
***
25858234 ATGACATGATAACATCTTTCAGCTATGGTCTTACTCATTTTTATC
1 ATGACGCCATAACATCTTTCAGCTATGGTCTTACTCATTTTTATC
* * *
25858279 GTGACGCCATAGCATCTTTTAGCTATGGTCTTACTCATTTT
1 ATGACGCCATAACATCTTTCAGCTATGGTCTTACTCATTTT
25858320 ACGTGTATAG
Statistics
Matches: 104, Mismatches: 25, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
44 34 0.33
45 70 0.67
ACGTcount: A:0.23, C:0.22, G:0.13, T:0.42
Consensus pattern (45 bp):
ATGACGCCATAACATCTTTCAGCTATGGTCTTACTCATTTTTATC
Found at i:25858306 original size:89 final size:89
Alignment explanation
Indices: 25858153--25858320 Score: 237
Period size: 89 Copynumber: 1.9 Consensus size: 89
25858143 ATATGATGCC
* ** * * *
25858153 ATAACATCTTTTAGCTATGGTCTTACTCATTTTAATCATGACGCTGTATCCTCCTTCAATTATGG
1 ATAACATCTTTCAGCTATGGTCTTACTCATTTTAATCATGACGCCATAGCATCCTTCAACTATGG
25858218 TCTTACTCATTTTATCATGACATG
66 TCTTACTCATTTTATCATGACATG
* * * * *
25858242 ATAACATCTTTCAGCTATGGTCTTACTCATTTTTATCGTGACGCCATAGCATCTTTTAGCTATGG
1 ATAACATCTTTCAGCTATGGTCTTACTCATTTTAATCATGACGCCATAGCATCCTTCAACTATGG
25858307 TCTTACTCATTTTA
66 TCTTACTCATTTTA
25858321 CGTGTATAGC
Statistics
Matches: 68, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
89 68 1.00
ACGTcount: A:0.24, C:0.21, G:0.12, T:0.43
Consensus pattern (89 bp):
ATAACATCTTTCAGCTATGGTCTTACTCATTTTAATCATGACGCCATAGCATCCTTCAACTATGG
TCTTACTCATTTTATCATGACATG
Found at i:25861178 original size:13 final size:13
Alignment explanation
Indices: 25861160--25861188 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
25861150 CATTGAGTAT
25861160 CAATGTCAATGGA
1 CAATGTCAATGGA
25861173 CAATGTCAATGGA
1 CAATGTCAATGGA
25861186 CAA
1 CAA
25861189 AAATTAATGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (13 bp):
CAATGTCAATGGA
Found at i:25863847 original size:20 final size:20
Alignment explanation
Indices: 25863822--25863873 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
25863812 TATGAACCAC
25863822 TCCATTTACTTACTTATCAT
1 TCCATTTACTTACTTATCAT
* *
25863842 TCCATTAACTTACTTTTCAT
1 TCCATTTACTTACTTATCAT
*
25863862 TTCATTTACTTA
1 TCCATTTACTTA
25863874 GCATAAGCTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.25, C:0.23, G:0.00, T:0.52
Consensus pattern (20 bp):
TCCATTTACTTACTTATCAT
Found at i:25865978 original size:415 final size:414
Alignment explanation
Indices: 25864847--25866090 Score: 2094
Period size: 415 Copynumber: 3.0 Consensus size: 414
25864837 GCTATTTGGT
*
25864847 AAATTTTCTCTTCTCCTCGATTTTCCACTCGTTCTCAATCTAAATTAATAATTTCATTCAATTCA
1 AAATTTTCTCTTCTCCTCGATTTTCCACTCATTCTCAATCTAAATTAATAATTTCATTCAATTCA
*
25864912 TTAATTTAGATAGTAAATCCAATTCGTTTTATGCAATTTAGTCATTTTT-TATATTTTATAAAAT
66 TTAATTTAGATAGTAAATCCAATTCATTTTATGCAATTTAGTCATTTTTATAT-TTTTATAAAAT
**
25864976 TACCCTCAACTTTTCATTTTTATTCAATTTAGTCCCTATGTCCCAATGACTAAGTACAGGGGCTA
130 TACCCTCAACTTTTCATTTTTATTCAATTTAGTCCCTATGTCCCAATGACTAAGTACAATGGCTA
*
25865041 GCTGGACCTAGTTGCAACAATCTCAAAAACATAAAAATTACAAGAAATGGATAAAACTATCACCT
195 GCTGGACCTAGTTGCAACAATCTCAAAAACATAAAAATTACAAGAAATGGATAAGACTATCACCT
*
25865106 ACATGCAACACTTGAATGTTGGTCGAATGTCTCTTGCTCCAAAAATGGAGTTCTCACGGTTGAAG
260 ATATGCAACACTTGAATGTTGGTCGAATGTCTCTTGCTCCAAAAATGGAGTTCTCACGGTTGAAG
25865171 AAGAAAGACATAAGTAGAAAAATGTTTTTGCTGTTCTTTTTTATTTATTACCTAATTATTTACTT
325 AAGAAAGACATAAGTAGAAAAATGTTTTTGCTGTTC-TTTTTATTTATTACCTAATTATTTACTT
*
25865236 TAATATTATTAAAAATATACCATATCATTAA
389 TAATATCATT---AA-A-ACCATATCATTAA
25865267 AAATTTTCTCTTCTCCTCGATTTTCCACTCATTCTCAATCTAAATTAATAATTTCATTCAATTCA
1 AAATTTTCTCTTCTCCTCGATTTTCCACTCATTCTCAATCTAAATTAATAATTTCATTCAATTCA
** * * *
25865332 TTAATTTAGATAGTAAATCCAATTCAACTTATGCAATTTA-ACCTTTTTAATATTTTTACAAAAT
66 TTAATTTAGATAGTAAATCCAATTCATTTTATGCAATTTAGTCATTTTT-ATATTTTTATAAAAT
* * * * *
25865396 TGCCCTCAACTTTTCATTTTTATTCAATTTAGTCCCTGA-G-CCTAA-AAC-ATGCA-AAT---T
130 TACCCTCAACTTTTCATTTTTATTCAATTTAGTCCCT-ATGTCCCAATGACTAAGTACAATGGCT
*
25865453 AACTGGACCTAGTTGCAACAATCTCAAAAACATAAAAATTACAAGAAATGGATAAGACTATCACC
194 AGCTGGACCTAGTTGCAACAATCTCAAAAACATAAAAATTACAAGAAATGGATAAGACTATCACC
25865518 TATATGCAACACTTGAATGTTGGTCGAATGTCTCTTGCTCCAAAAATGGAGTTCTCACGGTTGAA
259 TATATGCAACACTTGAATGTTGGTCGAATGTCTCTTGCTCCAAAAATGGAGTTCTCACGGTTGAA
*
25865583 GAAGAAAGACATAAGTAGAAAAATGTTTTTGCTGTTCTTTTTACTTATTACCTAATTATTTACTT
324 GAAGAAAGACATAAGTAGAAAAATGTTTTTGCTGTTCTTTTTATTTATTACCTAATTATTTACTT
25865648 TAATATCATTAAAACCATATCATTAA
389 TAATATCATTAAAACCATATCATTAA
25865674 AAATTTTCTCTTCTCCTCGATTTTCCACTCATTCTCAATCTAAATTAATAATTTCATTCAATTCA
1 AAATTTTCTCTTCTCCTCGATTTTCCACTCATTCTCAATCTAAATTAATAATTTCATTCAATTCA
* *
25865739 TTAATTTAGATAGTAAATCTAATTTATTTTATGCAATTTAGTCATTTTCTATATTTTTATAAAAT
66 TTAATTTAGATAGTAAATCCAATTCATTTTATGCAATTTAGTCATTTT-TATATTTTTATAAAAT
25865804 TACCCTCAACTTTTCATTTTTATTCAATTTAGTCCCTATGTCCCAATGACTAAGTACAATGGCTA
130 TACCCTCAACTTTTCATTTTTATTCAATTTAGTCCCTATGTCCCAATGACTAAGTACAATGGCTA
25865869 GCTGGACCTAGTTGCAACAATCTCAAAAACATAAAAATTACAAGAAATGGATAAGACTATCACCT
195 GCTGGACCTAGTTGCAACAATCTCAAAAACATAAAAATTACAAGAAATGGATAAGACTATCACCT
25865934 ATATGCAACACTTGAATGTTGGTCGAATGTCTCTTGCTCCAAAAATGGAGTTCTCACGGTTGAAG
260 ATATGCAACACTTGAATGTTGGTCGAATGTCTCTTGCTCCAAAAATGGAGTTCTCACGGTTGAAG
* *
25865999 AAGAAAGACATAAGCAAAAAAATGTTTTTGCTGTTCTTTTTATTTATTACCTAATTATTTACTTT
325 AAGAAAGACATAAGTAGAAAAATGTTTTTGCTGTTCTTTTTATTTATTACCTAATTATTTACTTT
**
25866064 AATATCATTAAAAATATATCATATAA
390 AATATCATTAAAACCATATCAT-TAA
25866090 A
1 A
25866091 TTAAAAAAAA
Statistics
Matches: 773, Mismatches: 37, Indels: 32
0.92 0.04 0.04
Matches are distributed among these distances:
407 115 0.15
408 57 0.07
409 7 0.01
410 2 0.00
411 3 0.00
412 39 0.05
413 165 0.21
415 213 0.28
416 5 0.01
417 3 0.00
418 2 0.00
419 10 0.01
420 148 0.19
421 4 0.01
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (414 bp):
AAATTTTCTCTTCTCCTCGATTTTCCACTCATTCTCAATCTAAATTAATAATTTCATTCAATTCA
TTAATTTAGATAGTAAATCCAATTCATTTTATGCAATTTAGTCATTTTTATATTTTTATAAAATT
ACCCTCAACTTTTCATTTTTATTCAATTTAGTCCCTATGTCCCAATGACTAAGTACAATGGCTAG
CTGGACCTAGTTGCAACAATCTCAAAAACATAAAAATTACAAGAAATGGATAAGACTATCACCTA
TATGCAACACTTGAATGTTGGTCGAATGTCTCTTGCTCCAAAAATGGAGTTCTCACGGTTGAAGA
AGAAAGACATAAGTAGAAAAATGTTTTTGCTGTTCTTTTTATTTATTACCTAATTATTTACTTTA
ATATCATTAAAACCATATCATTAA
Found at i:25869265 original size:7 final size:7
Alignment explanation
Indices: 25869253--25869312 Score: 120
Period size: 7 Copynumber: 8.6 Consensus size: 7
25869243 AATTAATTAA
25869253 TTTTATT
1 TTTTATT
25869260 TTTTATT
1 TTTTATT
25869267 TTTTATT
1 TTTTATT
25869274 TTTTATT
1 TTTTATT
25869281 TTTTATT
1 TTTTATT
25869288 TTTTATT
1 TTTTATT
25869295 TTTTATT
1 TTTTATT
25869302 TTTTATT
1 TTTTATT
25869309 TTTT
1 TTTT
25869313 TCATAAATTT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 53 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTATT
Found at i:25869269 original size:1 final size:1
Alignment explanation
Indices: 25869253--25869313 Score: 50
Period size: 1 Copynumber: 61.0 Consensus size: 1
25869243 AATTAATTAA
* * * * * * * *
25869253 TTTTATTTTTTATTTTTTATTTTTTATTTTTTATTTTTTATTTTTTATTTTTTATTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
25869314 CATAAATTTT
Statistics
Matches: 44, Mismatches: 16, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (1 bp):
T
Found at i:25875597 original size:36 final size:36
Alignment explanation
Indices: 25875550--25875622 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
25875540 TTGTTGAAGA
25875550 CAAAAATGTTCAATTTCTTCAGTAATTATTTTAACT
1 CAAAAATGTTCAATTTCTTCAGTAATTATTTTAACT
25875586 CAAAAATGTTCAATTTCTTCAGTAATTATTTTAACT
1 CAAAAATGTTCAATTTCTTCAGTAATTATTTTAACT
25875622 C
1 C
25875623 CACATTAATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.36, C:0.15, G:0.05, T:0.44
Consensus pattern (36 bp):
CAAAAATGTTCAATTTCTTCAGTAATTATTTTAACT
Found at i:25878020 original size:2 final size:2
Alignment explanation
Indices: 25878013--25878050 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
25878003 GCTTGTGAAA
25878013 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
25878051 CATATGTACT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:25880032 original size:56 final size:55
Alignment explanation
Indices: 25879923--25880033 Score: 127
Period size: 57 Copynumber: 2.0 Consensus size: 55
25879913 TTGGGTCCCA
* *
25879923 ATTTTTTTTTTTTGAGACACTGATGGCTAGCACCAACTTTATTAAATTAAAAAAT
1 ATTTTTTTTTTTTGAGACACTGATGGCTAGCACCAACCTTATCAAATTAAAAAAT
* * *
25879978 ATTTTTTTTGGTTTTGGGATACTGATGG-T-GACACCAACCTTATCAGATTTAAAAAA
1 ATTTTTTTT--TTTTGAGACACTGATGGCTAG-CACCAACCTTATCA-AATTAAAAAA
25880034 AATGGTTCTA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
55 10 0.21
56 13 0.28
57 24 0.51
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.41
Consensus pattern (55 bp):
ATTTTTTTTTTTTGAGACACTGATGGCTAGCACCAACCTTATCAAATTAAAAAAT
Found at i:25884814 original size:20 final size:20
Alignment explanation
Indices: 25884789--25884830 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
25884779 CTGATAACTA
*
25884789 CCGTTCACCATCGATCACTG
1 CCGTTCACCATCAATCACTG
*
25884809 CCGTTCACCGTCAATCACTG
1 CCGTTCACCATCAATCACTG
25884829 CC
1 CC
25884831 AATCACCTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.19, C:0.43, G:0.14, T:0.24
Consensus pattern (20 bp):
CCGTTCACCATCAATCACTG
Found at i:25886794 original size:89 final size:90
Alignment explanation
Indices: 25886679--25886991 Score: 458
Period size: 89 Copynumber: 3.5 Consensus size: 90
25886669 TTGAAAAATT
* * *
25886679 AATAATACGCA-AC-AAATTAAATTTACAGATACAAGAAAATACAAACATTCTAGAATATTAATA
1 AATAATACG-AGACTAAATTAAATTTACAGATACAAAAAAATACAAACATTCTAAAAAATTAATA
25886742 CATGAAAATATAAAATTCAAACAACA
65 CATGAAAATATAAAATTCAAACAACA
** * *
25886768 AATAATACGAG-CTAAATTAAATTTACAGACCCAAAAAAATACGACCATTCTAAAAAATTAATAC
1 AATAATACGAGACTAAATTAAATTTACAGATACAAAAAAATACAAACATTCTAAAAAATTAATAC
*
25886832 ACGAAAATATAAAATTCAAACAACA
66 ATGAAAATATAAAATTCAAACAACA
25886857 AATAATACG-GACTAAATTAAATTTACAGATACAAAAAAATACAAACATTCTAAAAAATTAATAC
1 AATAATACGAGACTAAATTAAATTTACAGATACAAAAAAATACAAACATTCTAAAAAATTAATAC
*
25886921 AAT-AAAATATAAAATTCGAACAACA
66 -ATGAAAATATAAAATTCAAACAACA
**
25886946 AATAATAC-AGACTAAATTTGATTTACAGATACAAAAATAATACAAA
1 AATAATACGAGACTAAATTAAATTTACAGATACAAAAA-AATACAAA
25886992 AATTTTGAAT
Statistics
Matches: 202, Mismatches: 16, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
88 3 0.01
89 190 0.94
90 9 0.04
ACGTcount: A:0.58, C:0.14, G:0.05, T:0.23
Consensus pattern (90 bp):
AATAATACGAGACTAAATTAAATTTACAGATACAAAAAAATACAAACATTCTAAAAAATTAATAC
ATGAAAATATAAAATTCAAACAACA
Found at i:25886954 original size:33 final size:32
Alignment explanation
Indices: 25886885--25886954 Score: 79
Period size: 32 Copynumber: 2.2 Consensus size: 32
25886875 AAATTTACAG
* *
25886885 ATACAAAAAAATACAAACATTCTAAAAAATTA
1 ATACAAAAAAATACAAACATTCGAAAAAAATA
* *
25886917 ATACAATAAAATATAAA-ATTCGAACAACAAATA
1 ATACAAAAAAATACAAACATTCGAA-AA-AAATA
25886950 ATACA
1 ATACA
25886955 GACTAAATTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
31 6 0.19
32 17 0.53
33 9 0.28
ACGTcount: A:0.64, C:0.13, G:0.01, T:0.21
Consensus pattern (32 bp):
ATACAAAAAAATACAAACATTCGAAAAAAATA
Found at i:25887561 original size:53 final size:54
Alignment explanation
Indices: 25887483--25887597 Score: 160
Period size: 53 Copynumber: 2.1 Consensus size: 54
25887473 ATCAGTGGCC
* * * * **
25887483 CAAAAAAGAATTCGAGACCCGAAAAAGGTGGTGTCGGCCATCACTGTCTTAAAA
1 CAAAAAAAAATTCGAGACCCAAAAAAGATGGTGTCGGCCATCAATGTCCCAAAA
*
25887537 CAAAAAAAAATT-GGGACCCAAAAAAGATGGTGTCGGCCATCAATGTCCCAAAA
1 CAAAAAAAAATTCGAGACCCAAAAAAGATGGTGTCGGCCATCAATGTCCCAAAA
25887590 CAAAAAAA
1 CAAAAAAA
25887598 TTCTCGAAAC
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 43 0.80
54 11 0.20
ACGTcount: A:0.45, C:0.20, G:0.19, T:0.16
Consensus pattern (54 bp):
CAAAAAAAAATTCGAGACCCAAAAAAGATGGTGTCGGCCATCAATGTCCCAAAA
Found at i:25887615 original size:53 final size:53
Alignment explanation
Indices: 25887483--25887615 Score: 144
Period size: 53 Copynumber: 2.5 Consensus size: 53
25887473 ATCAGTGGCC
* * * **
25887483 CAAAAAAGAATTCGAGACCCGAAAAAGGTGGTGTCGGCCATCACTGTCTTAAAA
1 CAAAAAAAAATTCGAGACCCG-AAAAGATGGTGTCGGCCATCAATGTCCCAAAA
* *
25887537 CAAAAAAAAATT-GGGACCCAAAAAAGATGGTGTCGGCCATCAATGTCCCAAAA
1 CAAAAAAAAATTCGAGACCC-GAAAAGATGGTGTCGGCCATCAATGTCCCAAAA
* *
25887590 C-AAAAAAATTCTCGAAACCCGAAAAG
1 CAAAAAAAAAT-TCGAGACCCGAAAAG
25887616 TGTGTTGGTG
Statistics
Matches: 65, Mismatches: 11, Indels: 7
0.78 0.13 0.08
Matches are distributed among these distances:
52 8 0.12
53 41 0.63
54 16 0.25
ACGTcount: A:0.44, C:0.21, G:0.19, T:0.16
Consensus pattern (53 bp):
CAAAAAAAAATTCGAGACCCGAAAAGATGGTGTCGGCCATCAATGTCCCAAAA
Found at i:25888245 original size:10 final size:10
Alignment explanation
Indices: 25888232--25888399 Score: 92
Period size: 10 Copynumber: 16.2 Consensus size: 10
25888222 GGGAAAGGAG
25888232 AAGAAAGAAA
1 AAGAAAGAAA
25888242 AAGAAAGAAA
1 AAGAAAGAAA
25888252 AAGAAAGGAAA
1 AAGAAA-GAAA
* *
25888263 GGAGAAGGAAA
1 -AAGAAAGAAA
25888274 GAA-AAA-AAA
1 -AAGAAAGAAA
25888283 GAAGGAAAGAAA
1 -AA-GAAAGAAA
* *
25888295 AGGAAAGAAG
1 AAGAAAGAAA
*
25888305 AAGAAAAAAGA
1 AAGAAAGAA-A
25888316 AAGAAA-AAGA
1 AAGAAAGAA-A
*
25888326 AGGAAAGAAA
1 AAGAAAGAAA
* *
25888336 ATGAAATG-AG
1 AAGAAA-GAAA
*
25888346 AAGAAAAAAGA
1 AAGAAAGAA-A
*
25888357 AAGAAAGAAG
1 AAGAAAGAAA
**
25888367 AAGAAGAGGGA
1 AAGAA-AGAAA
* *
25888378 AGGAAGGAAA
1 AAGAAAGAAA
25888388 AAGAAAGAAA
1 AAGAAAGAAA
25888398 AA
1 AA
25888400 AAGGTGATTT
Statistics
Matches: 121, Mismatches: 26, Indels: 22
0.72 0.15 0.13
Matches are distributed among these distances:
9 6 0.05
10 71 0.59
11 37 0.31
12 7 0.06
ACGTcount: A:0.71, C:0.00, G:0.28, T:0.01
Consensus pattern (10 bp):
AAGAAAGAAA
Found at i:25888315 original size:31 final size:30
Alignment explanation
Indices: 25888226--25888396 Score: 97
Period size: 31 Copynumber: 5.6 Consensus size: 30
25888216 AGGAGAGGGA
25888226 AAGGAGAAG-AAAGAAA-AAGAA-AGAAAAAG
1 AAGGA-AAGAAAAGAAAGAAGAAGA-AAAAAG
* *
25888255 AAAGGAAAG--GAGAAGGAAAGAA-AAAAAAG
1 -AAGGAAAGAAAAGAAAG-AAGAAGAAAAAAG
25888284 AAGGAAAGAAAAGGAAAGAAGAAGAAAAAAG
1 AAGGAAAGAAAA-GAAAGAAGAAGAAAAAAG
* **
25888315 AAAGAAA-AAGAAGGAAAGAA-AATGAAATGAG
1 AAGGAAAGAA-AA-GAAAGAAGAA-GAAAAAAG
* * * **
25888346 AAGAAAAAAGAAAGAAAGAAGAAGAAGAGGG
1 AAGGAAAGA-AAAGAAAGAAGAAGAAAAAAG
*
25888377 AAGGAAGGAAAAAGAAAGAA
1 AAGGAAAG-AAAAGAAAGAA
25888397 AAAAAGGTGA
Statistics
Matches: 114, Mismatches: 15, Indels: 23
0.75 0.10 0.15
Matches are distributed among these distances:
28 12 0.11
29 9 0.08
30 21 0.18
31 65 0.57
32 6 0.05
33 1 0.01
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (30 bp):
AAGGAAAGAAAAGAAAGAAGAAGAAAAAAG
Found at i:25888929 original size:158 final size:152
Alignment explanation
Indices: 25888731--25889200 Score: 567
Period size: 158 Copynumber: 3.0 Consensus size: 152
25888721 AAATGGTATA
* *
25888731 TTTAAAAAACACACTAAATTAATAAATTTCAAATATAATGTACTGAAATAATTTAAAATAATAAA
1 TTTAAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTGAAATAATATAAAATAATAAA
* * *
25888796 ATTAGAAAATATGATATTTTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAACAAAGGGCCGA
66 ATTAGAAAATATGATATTTTTTAAAGTAATAAAATTCGGAGAAAATAATACGAATAAAGGGCCGA
*
25888861 AGTAAGAGTTTTTTACTAAATTT
131 A-TAAGGGTTTTTTACTAAATTT
* * *
25888884 TTTAAAAATTCAGA-TATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAAAAT
1 TTTAAAAA-ACACACTA-AATTAAT---AA-ATTTCAAACATAATGTACTGAAATAATATAAAAT
*
25888948 AATAAAA-TACGAAAATAAT-ATATTTTTATAAAGTAATAAAATTCGG-GAAAATAATACGAGTA
60 AATAAAATTA-GAAAAT-ATGATATTTTT-TAAAGTAATAAAATTCGGAGAAAATAATACGAATA
** *
25889010 AAGGGTAGGAATAAGGGGGTTTTTA--AAATTT
122 AAGGG-CCGAATAA-GGGTTTTTTACTAAATTT
*
25889041 ATTTAAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTGAAATAATGTAAAATAATAA
1 -TTTAAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTGAAATAATATAAAATAATAA
* * *
25889106 AATTAGAAAATATGATATTTTTATTGAAAGTAATAAAATTC-GAGAAAATAGTACAAATAAATGG
65 AATTAGAAAATATGATA-TTTT-TT-AAAGTAATAAAATTCGGAGAAAATAATACGAATAAAGGG
*
25889170 CCAAAATAAGGGTTTTTTACTAAAATTT
127 CC-GAATAAGGGTTTTTTACT-AAATTT
25889198 TTT
1 TTT
25889201 TGAACTTGCA
Statistics
Matches: 269, Mismatches: 25, Indels: 43
0.80 0.07 0.13
Matches are distributed among these distances:
152 2 0.01
153 58 0.22
154 29 0.11
155 38 0.14
156 3 0.01
157 26 0.10
158 83 0.31
159 30 0.11
ACGTcount: A:0.51, C:0.06, G:0.11, T:0.32
Consensus pattern (152 bp):
TTTAAAAAACACACTAAATTAATAAATTTCAAACATAATGTACTGAAATAATATAAAATAATAAA
ATTAGAAAATATGATATTTTTTAAAGTAATAAAATTCGGAGAAAATAATACGAATAAAGGGCCGA
ATAAGGGTTTTTTACTAAATTT
Found at i:25895550 original size:10 final size:10
Alignment explanation
Indices: 25895522--25895557 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
25895512 AAATATCTTT
25895522 TTTTTCTCTTC
1 TTTTTCTC-TC
*
25895533 TCTTTCTCTC
1 TTTTTCTCTC
25895543 TTTTTCTCTC
1 TTTTTCTCTC
25895553 TTTTT
1 TTTTT
25895558 TCCGGTAGCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 16 0.70
11 7 0.30
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (10 bp):
TTTTTCTCTC
Found at i:25895557 original size:11 final size:11
Alignment explanation
Indices: 25895517--25895559 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
25895507 TAAAAAAATA
*
25895517 TCTTTTTTTTC
1 TCTTTTTTCTC
25895528 TCTTCTCTTTCTC
1 TCTT-T-TTTCTC
25895541 TC-TTTTTCTC
1 TCTTTTTTCTC
25895551 TCTTTTTTC
1 TCTTTTTTC
25895560 CGGTAGCACC
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
10 8 0.29
11 11 0.39
12 2 0.07
13 7 0.25
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (11 bp):
TCTTTTTTCTC
Found at i:25895585 original size:3 final size:3
Alignment explanation
Indices: 25895579--25895603 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
25895569 CTCCTCTTTC
25895579 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
25895604 ATTTTTCTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:25895860 original size:14 final size:14
Alignment explanation
Indices: 25895825--25895861 Score: 53
Period size: 11 Copynumber: 2.9 Consensus size: 14
25895815 TAATTTTTTA
25895825 TTTTGGGATTAATT
1 TTTTGGGATTAATT
25895839 TTTT---ATTAATT
1 TTTTGGGATTAATT
25895850 TTTTGGGATTAA
1 TTTTGGGATTAA
25895862 ATGAGTAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 6
0.77 0.00 0.23
Matches are distributed among these distances:
11 11 0.55
14 9 0.45
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.59
Consensus pattern (14 bp):
TTTTGGGATTAATT
Found at i:25896086 original size:20 final size:18
Alignment explanation
Indices: 25896053--25896091 Score: 51
Period size: 20 Copynumber: 2.1 Consensus size: 18
25896043 ATTTAATCCA
*
25896053 TTGAATCTAGATAAGGTT
1 TTGAATCTAGATAAAGTT
25896071 TTGACATCTCAGATAAAGTT
1 TTGA-ATCT-AGATAAAGTT
25896091 T
1 T
25896092 AAAATAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 4 0.22
20 10 0.56
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.38
Consensus pattern (18 bp):
TTGAATCTAGATAAAGTT
Found at i:25897871 original size:30 final size:27
Alignment explanation
Indices: 25897837--25897906 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 27
25897827 CGAATATAAT
25897837 AAATATATTTTTTATTTTAAAATATTTTTA
1 AAATATATTTTTTATTTT---ATATTTTTA
*
25897867 AAATACT-TTTTTTATTTTTTATTTTTA
1 AAATA-TATTTTTTATTTTATATTTTTA
*
25897894 AAATAAATTTTTT
1 AAATATATTTTTT
25897907 GGTATTAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
27 19 0.53
30 16 0.44
31 1 0.03
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.63
Consensus pattern (27 bp):
AAATATATTTTTTATTTTATATTTTTA
Found at i:25899832 original size:34 final size:34
Alignment explanation
Indices: 25899794--25899862 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
25899784 AATTATAAAG
25899794 ATATATTTGATCATGGTATTTTAATTACTGTCTA
1 ATATATTTGATCATGGTATTTTAATTACTGTCTA
*
25899828 ATATATTTGATCATGGTATTTTGATTACTGTCTA
1 ATATATTTGATCATGGTATTTTAATTACTGTCTA
25899862 A
1 A
25899863 AGTTTGTGAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.29, C:0.09, G:0.13, T:0.49
Consensus pattern (34 bp):
ATATATTTGATCATGGTATTTTAATTACTGTCTA
Found at i:25902183 original size:16 final size:16
Alignment explanation
Indices: 25902164--25902227 Score: 119
Period size: 16 Copynumber: 4.0 Consensus size: 16
25902154 ACTATTACGC
25902164 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
*
25902180 CTCTATTCCATTACAC
1 CTCTATTCCATTACAG
25902196 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
25902212 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
25902228 TGAACCAAAC
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 46 1.00
ACGTcount: A:0.25, C:0.33, G:0.05, T:0.38
Consensus pattern (16 bp):
CTCTATTCCATTACAG
Found at i:25902199 original size:32 final size:32
Alignment explanation
Indices: 25902157--25902226 Score: 131
Period size: 32 Copynumber: 2.2 Consensus size: 32
25902147 TTGAATTACT
*
25902157 ATTACGCCTCTATTCCATTACAGCTCTATTCC
1 ATTACACCTCTATTCCATTACAGCTCTATTCC
25902189 ATTACACCTCTATTCCATTACAGCTCTATTCC
1 ATTACACCTCTATTCCATTACAGCTCTATTCC
25902221 ATTACA
1 ATTACA
25902227 GTGAACCAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.26, C:0.33, G:0.04, T:0.37
Consensus pattern (32 bp):
ATTACACCTCTATTCCATTACAGCTCTATTCC
Found at i:25908462 original size:17 final size:17
Alignment explanation
Indices: 25908442--25908474 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
25908432 TTTTTTAGGG
25908442 TTTTTCAAATTTTTATT
1 TTTTTCAAATTTTTATT
25908459 TTTTTCAAATTTTTAT
1 TTTTTCAAATTTTTAT
25908475 GATATTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTCAAATTTTTATT
Found at i:25909391 original size:16 final size:16
Alignment explanation
Indices: 25909370--25909403 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
25909360 TGATTAGCAA
25909370 AATCGAAGAATTCCCT
1 AATCGAAGAATTCCCT
25909386 AATCGAAGAATTCCCT
1 AATCGAAGAATTCCCT
25909402 AA
1 AA
25909404 CTCTTACTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.24
Consensus pattern (16 bp):
AATCGAAGAATTCCCT
Found at i:25909657 original size:56 final size:55
Alignment explanation
Indices: 25909571--25909678 Score: 198
Period size: 56 Copynumber: 1.9 Consensus size: 55
25909561 GTATCCATTG
*
25909571 GATGATAAATCATCACTTTTAATTTGAATAGTGCTTATGAATAATTAAATTTGTAA
1 GATGATAAATCATCACTTTTAATTTGAATAGTGCTCATGAATAATT-AATTTGTAA
25909627 GATGATAAATCATCACTTTTAATTTGAATAGTGCTCATGAATAATTAATTTG
1 GATGATAAATCATCACTTTTAATTTGAATAGTGCTCATGAATAATTAATTTG
25909679 CAATCTATAA
Statistics
Matches: 51, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
55 6 0.12
56 45 0.88
ACGTcount: A:0.38, C:0.08, G:0.13, T:0.41
Consensus pattern (55 bp):
GATGATAAATCATCACTTTTAATTTGAATAGTGCTCATGAATAATTAATTTGTAA
Done.