Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 78 of 145
Found at i:25911349 original size:477 final size:477
Alignment explanation
Indices: 25910455--25911412 Score: 1736
Period size: 477 Copynumber: 2.0 Consensus size: 477
25910445 CCACAACTTT
25910455 ATATCTAACAAGAGATCTCTTAGCCATTCCGCTTCCTTGCCAGTAGCTGCTAAGGCTATAAATTC
1 ATATCTAACAAGAGATCTCTTAGCCATTCCGCTTCCTTGCCAGTAGCTGCTAAGGCTATAAATTC
* * *
25910520 AGCCTCCATAGTTGAATGTGATATGCATGTTTGTTTCTTGGAGGCCCAACTAATGACTCTACCTC
66 AGCCTCCATAGTTGAATGTGATATGCAAGTTTGGTTCTTGGAGGCCCAACTAATGACTCCACCTC
*
25910585 CAATTGTAAAAATTCATCCCGATGTGAACTTATTGTCACTTAGACTTGTAATCCAACTTGCATCC
131 CAATTGTAAAAATTCATCCCGATGTGAACTTATTATCACTTAGACTTGTAATCCAACTTGCATCC
*
25910650 GAGTAACCTTCTAGTACTGCGGGATAATCACTATAGAATAATCCAAAATTATTTATTTTCTTAAG
196 GAGTAACCTTCTAGTACTCCGGGATAATCACTATAGAATAATCCAAAATTATTTATTTTCTTAAG
*
25910715 ATAGCCAAAAATTCTACAAATGCCTTTCCAATGATCGGTACAAGGACAATTTGTAAATCTCGCTA
261 ATAGCCAAAAATTCTACAAATGCCTTTCCAATGATCGGTACAAGGACAATTTGTAAATCTCGCCA
* * *
25910780 ATTTGCACACAACAAATGTGATATTAGGTCTAGTACAATGCATTGCATACATTAGACTTCCGATT
326 ATTTGCACACAACAAATGCGATATCAGGTCTAGTACAATGCATTGAATACATTAGACTTCCGATT
** *
25910845 ATGCTGGCGTACTCAAGTTGCGATATAGCCCTGCCATTATTCTCACTTAACTTGAAGTTCGAATC
391 ACACTGGCGTACTCAAGTTGCGATATAGCCATGCCATTATTCTCACTTAACTTGAAGTTCGAATC
* *
25910910 GTATGGAGTGTTCGAATCCTTG
456 GTATGGAATGTTCAAATCCTTG
*
25910932 ATATCTAACAAGAGATCTCTTAGCCATTTCGCTTCCTTGCCAGTAGCTGCTAAGGCTATAAATTC
1 ATATCTAACAAGAGATCTCTTAGCCATTCCGCTTCCTTGCCAGTAGCTGCTAAGGCTATAAATTC
25910997 AGCCTCCATAGTTGAATGTGATATGCAAGTTTGGTTCTTGGAGGCCCAACTAATGACTCCACCTC
66 AGCCTCCATAGTTGAATGTGATATGCAAGTTTGGTTCTTGGAGGCCCAACTAATGACTCCACCTC
25911062 CAATTGTAAAAATTCATCCCGATGTGAACTTATTATCACTTAGACTTGTAATCCAACTTGCATCC
131 CAATTGTAAAAATTCATCCCGATGTGAACTTATTATCACTTAGACTTGTAATCCAACTTGCATCC
25911127 GAGTAACCTTCTAGTACTCCGGGATAATCACTATAGAATAATCCAAAATTATTTATTTTCTTAAG
196 GAGTAACCTTCTAGTACTCCGGGATAATCACTATAGAATAATCCAAAATTATTTATTTTCTTAAG
* *
25911192 TTAGCCAAAAATTCTACAAATGCCTTTCCAATTATCGGTACAAGGACAATTTGTAAATCTCGCCA
261 ATAGCCAAAAATTCTACAAATGCCTTTCCAATGATCGGTACAAGGACAATTTGTAAATCTCGCCA
*
25911257 ATTTGCACACAACAAATGCGATATCAGGTCTAGTACAATGCATTGAATACATTAGACTTCTGATT
326 ATTTGCACACAACAAATGCGATATCAGGTCTAGTACAATGCATTGAATACATTAGACTTCCGATT
*
25911322 GCACTGGCGTACTCAAGTTGCGATATAGCCATGCCATTATTCTCACTTAACTTGAAGTTCGAATC
391 ACACTGGCGTACTCAAGTTGCGATATAGCCATGCCATTATTCTCACTTAACTTGAAGTTCGAATC
*
25911387 GTATGTAATGTTCAAATCCTTG
456 GTATGGAATGTTCAAATCCTTG
25911409 ATAT
1 ATAT
25911413 TCAAGTGTTT
Statistics
Matches: 461, Mismatches: 20, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
477 461 1.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (477 bp):
ATATCTAACAAGAGATCTCTTAGCCATTCCGCTTCCTTGCCAGTAGCTGCTAAGGCTATAAATTC
AGCCTCCATAGTTGAATGTGATATGCAAGTTTGGTTCTTGGAGGCCCAACTAATGACTCCACCTC
CAATTGTAAAAATTCATCCCGATGTGAACTTATTATCACTTAGACTTGTAATCCAACTTGCATCC
GAGTAACCTTCTAGTACTCCGGGATAATCACTATAGAATAATCCAAAATTATTTATTTTCTTAAG
ATAGCCAAAAATTCTACAAATGCCTTTCCAATGATCGGTACAAGGACAATTTGTAAATCTCGCCA
ATTTGCACACAACAAATGCGATATCAGGTCTAGTACAATGCATTGAATACATTAGACTTCCGATT
ACACTGGCGTACTCAAGTTGCGATATAGCCATGCCATTATTCTCACTTAACTTGAAGTTCGAATC
GTATGGAATGTTCAAATCCTTG
Found at i:25918480 original size:144 final size:145
Alignment explanation
Indices: 25918220--25918509 Score: 546
Period size: 144 Copynumber: 2.0 Consensus size: 145
25918210 TAATCACTTT
*
25918220 AATATTCAATTAATAAAATACTATAAAGTATTAAATTAAATTAATATTAACTATATTAAAATAAT
1 AATATTCAATTAATAAAATACTATAAAGTATTAAATTAAATTAATATTAAATATATTAAAATAAT
25918285 ATTACTTTTGGATTAATTATTTTGAAACCAAATTATCCGGTAGAGTCTCAGTAGGAGTGTGTTCC
66 ATTACTTTTGGATTAATTATTTTGAAACCAAATTATCCGGTAGAGTCTCAGTAGGAGTGTGTTCC
25918350 TCCA-ACTCAATCAC
131 TCCACACTCAATCAC
*
25918364 AATATTCAATTAATAAAATACTATAAAGTATTAAATTAAATTAATATTAAATCTATTAAAATAAT
1 AATATTCAATTAATAAAATACTATAAAGTATTAAATTAAATTAATATTAAATATATTAAAATAAT
25918429 ATTACTTTTGGATTAATTATTTTGAAACCAAATTATCCGGTAGAGTCTCAGTAGGAGTGTGTTCC
66 ATTACTTTTGGATTAATTATTTTGAAACCAAATTATCCGGTAGAGTCTCAGTAGGAGTGTGTTCC
25918494 TCCACTACTCAATCAC
131 TCCAC-ACTCAATCAC
25918510 CGAAGGACCA
Statistics
Matches: 142, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
144 132 0.93
146 10 0.07
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.37
Consensus pattern (145 bp):
AATATTCAATTAATAAAATACTATAAAGTATTAAATTAAATTAATATTAAATATATTAAAATAAT
ATTACTTTTGGATTAATTATTTTGAAACCAAATTATCCGGTAGAGTCTCAGTAGGAGTGTGTTCC
TCCACACTCAATCAC
Found at i:25919523 original size:120 final size:120
Alignment explanation
Indices: 25919307--25919545 Score: 469
Period size: 120 Copynumber: 2.0 Consensus size: 120
25919297 TATGATATCC
25919307 TTGATTCCTTTGAGTTAAATTGTTCACTCAATACAATCCTATTTTATCTCATTATCACCATTGTG
1 TTGATTCCTTTGAGTTAAATTGTTCACTCAATACAATCCTATTTTATCTCATTATCACCATTGTG
25919372 TCTTCTTAATGATTAATATAATCACTATCAACAAATGATTGTGATAAATTACTCG
66 TCTTCTTAATGATTAATATAATCACTATCAACAAATGATTGTGATAAATTACTCG
25919427 TTGATTCCTTTGAGTTAAATTGTTCACTCAATACAATCCTATTTTATCTCATTATCACCATTGTG
1 TTGATTCCTTTGAGTTAAATTGTTCACTCAATACAATCCTATTTTATCTCATTATCACCATTGTG
*
25919492 TCTTCTTAATGATTAATATAATCACTGTCAACAAATGATTGTGATAAATTACTC
66 TCTTCTTAATGATTAATATAATCACTATCAACAAATGATTGTGATAAATTACTC
25919546 TGTTCAAGAA
Statistics
Matches: 118, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 118 1.00
ACGTcount: A:0.31, C:0.18, G:0.09, T:0.42
Consensus pattern (120 bp):
TTGATTCCTTTGAGTTAAATTGTTCACTCAATACAATCCTATTTTATCTCATTATCACCATTGTG
TCTTCTTAATGATTAATATAATCACTATCAACAAATGATTGTGATAAATTACTCG
Found at i:25926272 original size:68 final size:68
Alignment explanation
Indices: 25926162--25926340 Score: 261
Period size: 68 Copynumber: 2.6 Consensus size: 68
25926152 GTTACACTAA
* * *
25926162 CTATGGTCTTAGACATTATAAAC-CTATGTTTAATGTCTTGGCGAACTCCATATGTTGCCATAAC
1 CTATGGTCTTAAACATTATGAACTC-ATGTTTAATGTCCTGGCGAACTCCATATGTTGCCATAAC
25926226 CTAG
65 CTAG
* *
25926230 CTATGGTCTTACACATTATGAACTCATGTTTAATGTCCTGGCGAACTCCATATGTTGCCATAGCC
1 CTATGGTCTTAAACATTATGAACTCATGTTTAATGTCCTGGCGAACTCCATATGTTGCCATAACC
*
25926295 TGG
66 TAG
** *
25926298 CTATGGTCTTAAACATTATGGGCTCATGTTTAAGGTCCTGGCG
1 CTATGGTCTTAAACATTATGAACTCATGTTTAATGTCCTGGCG
25926341 GACTTTTGAT
Statistics
Matches: 101, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
68 100 0.99
69 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.35
Consensus pattern (68 bp):
CTATGGTCTTAAACATTATGAACTCATGTTTAATGTCCTGGCGAACTCCATATGTTGCCATAACC
TAG
Found at i:25926461 original size:33 final size:34
Alignment explanation
Indices: 25926384--25926474 Score: 103
Period size: 35 Copynumber: 2.7 Consensus size: 34
25926374 CCGCGGTGTT
* * * *
25926384 ACCCCGAAGGACCTATAAATCATTTCCATGATTTC
1 ACCCCGAAGGACCTATAAACCGTTTCCACGA-GTC
**
25926419 ACCTTGAAGGACCTATAAACCGTTTCCACG-GTC
1 ACCCCGAAGGACCTATAAACCGTTTCCACGAGTC
*
25926452 ACCCCGAAGGACTTATAAACCGT
1 ACCCCGAAGGACCTATAAACCGT
25926475 CGTCATGGTG
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
33 22 0.47
35 25 0.53
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (34 bp):
ACCCCGAAGGACCTATAAACCGTTTCCACGAGTC
Found at i:25937131 original size:14 final size:14
Alignment explanation
Indices: 25937112--25937142 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
25937102 CAAACATTAG
25937112 GTTCCATCAGGTTT
1 GTTCCATCAGGTTT
25937126 GTTCCATCAGGTTT
1 GTTCCATCAGGTTT
25937140 GTT
1 GTT
25937143 ACAACCTGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.13, C:0.19, G:0.23, T:0.45
Consensus pattern (14 bp):
GTTCCATCAGGTTT
Found at i:25938916 original size:20 final size:20
Alignment explanation
Indices: 25938883--25938920 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
25938873 TAACATGTCA
25938883 AAAATAAATAAAAATTTATG
1 AAAATAAATAAAAATTTATG
* *
25938903 AAAATTAATTAAAATTTA
1 AAAATAAATAAAAATTTA
25938921 ATAGGTTAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATAAATAAAAATTTATG
Found at i:25940255 original size:68 final size:69
Alignment explanation
Indices: 25940178--25940313 Score: 166
Period size: 68 Copynumber: 2.0 Consensus size: 69
25940168 TTTAATAATT
* ** * *
25940178 TTAAAATTAAATTAAATTTAATACTTATCTTAATAG-TTTTTTATTAACTTAATATGAAAGTGAT
1 TTAAAATTAAATTAAATCTAATACTTATCTTAATAGATGCTATATTAACTTAATATGAAAGTAAT
25940242 TTTC
66 TTTC
* * * * * *
25940246 TTAATATTAAATTTAATCTAATATTTATCTTGATAGATGCTATATTAATTTAATATTAAAGTAAT
1 TTAAAATTAAATTAAATCTAATACTTATCTTAATAGATGCTATATTAACTTAATATGAAAGTAAT
25940311 TTT
66 TTT
25940314 GTTTAATCAT
Statistics
Matches: 56, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
68 31 0.55
69 25 0.45
ACGTcount: A:0.40, C:0.05, G:0.06, T:0.49
Consensus pattern (69 bp):
TTAAAATTAAATTAAATCTAATACTTATCTTAATAGATGCTATATTAACTTAATATGAAAGTAAT
TTTC
Found at i:25944285 original size:51 final size:51
Alignment explanation
Indices: 25944199--25944308 Score: 166
Period size: 51 Copynumber: 2.2 Consensus size: 51
25944189 TAGACTCCTT
25944199 CAACCTTACGGTGATTGTCCTTGATGTTACAACTTTTGTAGCATATTGTCG
1 CAACCTTACGGTGATTGTCCTTGATGTTACAACTTTTGTAGCATATTGTCG
* * * ** *
25944250 CAACTTTATGGTGATTTTCCTTGATGTTATGACTTTTGTAGCATATTTTCG
1 CAACCTTACGGTGATTGTCCTTGATGTTACAACTTTTGTAGCATATTGTCG
25944301 CAACCTTA
1 CAACCTTA
25944309 ACACTTGATG
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.22, C:0.18, G:0.17, T:0.43
Consensus pattern (51 bp):
CAACCTTACGGTGATTGTCCTTGATGTTACAACTTTTGTAGCATATTGTCG
Found at i:25945425 original size:38 final size:39
Alignment explanation
Indices: 25945374--25945453 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
25945364 TGGTACATCA
25945374 AAGCTAACAATGT-CCCCTTTTTTATATAAGAAAAAATT
1 AAGCTAACAATGTCCCCCTTTTTTATATAAGAAAAAATT
25945412 AAGCTAACAATGTCCCCCTTTTTTATATAAGAAAAAATT
1 AAGCTAACAATGTCCCCCTTTTTTATATAAGAAAAAATT
25945451 AAG
1 AAG
25945454 AGAGACTTAC
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 13 0.32
39 28 0.68
ACGTcount: A:0.42, C:0.16, G:0.09, T:0.33
Consensus pattern (39 bp):
AAGCTAACAATGTCCCCCTTTTTTATATAAGAAAAAATT
Found at i:25956168 original size:16 final size:17
Alignment explanation
Indices: 25956141--25956175 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
25956131 AGAGAGTTGA
25956141 GAGAGAGGATGAGAGAT
1 GAGAGAGGATGAGAGAT
*
25956158 GAGAG-GGATGAGGGAT
1 GAGAGAGGATGAGAGAT
25956174 GA
1 GA
25956176 TTGATGAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.37, C:0.00, G:0.51, T:0.11
Consensus pattern (17 bp):
GAGAGAGGATGAGAGAT
Found at i:25956183 original size:14 final size:14
Alignment explanation
Indices: 25956164--25956193 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
25956154 AGATGAGAGG
25956164 GATGAGGGATGATT
1 GATGAGGGATGATT
25956178 GATGAGGGATGATT
1 GATGAGGGATGATT
25956192 GA
1 GA
25956194 AAAAATAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.43, T:0.27
Consensus pattern (14 bp):
GATGAGGGATGATT
Found at i:25956660 original size:13 final size:14
Alignment explanation
Indices: 25956632--25956665 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
25956622 CAATTTTATT
25956632 AATGAAATATTTAA
1 AATGAAATATTTAA
*
25956646 AATGAATTA-TTAA
1 AATGAAATATTTAA
25956659 AATGAAA
1 AATGAAA
25956666 ACTATATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.32
Consensus pattern (14 bp):
AATGAAATATTTAA
Found at i:25978504 original size:24 final size:24
Alignment explanation
Indices: 25978489--25978540 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
25978479 AATCAAAGTC
25978489 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
25978513 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
25978537 AAAT
1 AAAT
25978541 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:25982913 original size:24 final size:24
Alignment explanation
Indices: 25982898--25982949 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
25982888 AATCAAAGTC
25982898 AAATATATTATGCTAATAAATGCT
1 AAATATATTATGCTAATAAATGCT
* * *
25982922 AAATATATTATACTCATAAATACT
1 AAATATATTATGCTAATAAATGCT
25982946 AAAT
1 AAAT
25982950 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATGCT
Found at i:25990563 original size:28 final size:28
Alignment explanation
Indices: 25990532--25990588 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
25990522 ACCATTAAAG
25990532 AAAATAAAGGTTTCATCAAGTAATCCCA
1 AAAATAAAGGTTTCATCAAGTAATCCCA
25990560 AAAATAAAGGTTTCATCAAGTAATCCCA
1 AAAATAAAGGTTTCATCAAGTAATCCCA
25990588 A
1 A
25990589 CTCTATGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.47, C:0.18, G:0.11, T:0.25
Consensus pattern (28 bp):
AAAATAAAGGTTTCATCAAGTAATCCCA
Found at i:25990979 original size:42 final size:42
Alignment explanation
Indices: 25990894--25990977 Score: 116
Period size: 42 Copynumber: 2.0 Consensus size: 42
25990884 GTAGGGTAAA
* * * *
25990894 TCCAACAACCCAAGTTTTTCTTCTCCTTTTTTAAATTCTTTT
1 TCCAACAACCCAAGATTATCTTCTCCTTCTTCAAATTCTTTT
*
25990936 TCCAACAACCCAAGATTATCTTCTCC-TCTTCAAATTTTTTT
1 TCCAACAACCCAAGATTATCTTCTCCTTCTTCAAATTCTTTT
25990977 T
1 T
25990978 TCTAGGATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 13 0.35
42 24 0.65
ACGTcount: A:0.24, C:0.27, G:0.02, T:0.46
Consensus pattern (42 bp):
TCCAACAACCCAAGATTATCTTCTCCTTCTTCAAATTCTTTT
Found at i:25992524 original size:20 final size:19
Alignment explanation
Indices: 25992480--25992524 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
25992470 AAACTGTGAA
*
25992480 AAATTCAAAATTAAGGGGT
1 AAATTCAAAATTAAGGGCT
*
25992499 AGAATTGAAAATTAAGGAGCT
1 A-AATTCAAAATTAAGG-GCT
25992520 AAATT
1 AAATT
25992525 TGGCCTAGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 1 0.05
20 18 0.82
21 3 0.14
ACGTcount: A:0.49, C:0.04, G:0.20, T:0.27
Consensus pattern (19 bp):
AAATTCAAAATTAAGGGCT
Found at i:25995237 original size:17 final size:19
Alignment explanation
Indices: 25995206--25995244 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
25995196 GAAATATTTA
*
25995206 TTTTGATGTTTTTAT-TAT
1 TTTTGATGTTATTATATAT
25995224 TTTTGATG-TATTATATAT
1 TTTTGATGTTATTATATAT
25995242 TTT
1 TTT
25995245 CAAATTATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.21, C:0.00, G:0.10, T:0.69
Consensus pattern (19 bp):
TTTTGATGTTATTATATAT
Found at i:26004327 original size:21 final size:21
Alignment explanation
Indices: 26004303--26004342 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
26004293 TTGTGCCTGC
26004303 ATCTGA-TTCTGGTGTGGATTT
1 ATCTGACTT-TGGTGTGGATTT
*
26004324 ATCTGACTTTGTTGTGGAT
1 ATCTGACTTTGGTGTGGAT
26004343 GTATTTGAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 15 0.88
22 2 0.12
ACGTcount: A:0.15, C:0.10, G:0.28, T:0.47
Consensus pattern (21 bp):
ATCTGACTTTGGTGTGGATTT
Found at i:26005714 original size:17 final size:16
Alignment explanation
Indices: 26005683--26005716 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
26005673 AAATATTCTG
26005683 AAATAAAAACAAACAA
1 AAATAAAAACAAACAA
*
26005699 AAATAAACATCAAACAA
1 AAATAAA-AACAAACAA
26005716 A
1 A
26005717 CGCCATCCCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.76, C:0.15, G:0.00, T:0.09
Consensus pattern (16 bp):
AAATAAAAACAAACAA
Found at i:26010589 original size:205 final size:205
Alignment explanation
Indices: 26010220--26010589 Score: 498
Period size: 205 Copynumber: 1.8 Consensus size: 205
26010210 GCGTAACCGG
* * *
26010220 AAAACGCCAGAACTTTTGAAATCGAAACGCAACGTTTCGTCTTGAGCTATAGCACCTTTAGCAGC
1 AAAACGCCAAAAATTTTGAAACCGAAACGCAACGTTTCGTCTTGAGCTATAGCACCTTTAGCAGC
** * * * * *
26010285 GCTTAGCTGAAAATGCCGCTATATATAAGCTTTTTGTGGCGCTATCCCTGAATCGCCGCAAATAT
66 GCTTAGCCCAAAACGCCGCTATATATAAGCTTTTAGTGGCGCTATCCCTGAAGCGCCGCAAAAAA
* *
26010350 TTTGAACAAAACGCATCGTTCGGGTTTGACGTATAAAGGCATTAGTGGTGCTTACCTGAAAACGC
131 TTTGAACAAAACGCATCGTTCGGGCTTCACGTATAAAGGCATTAGTGGTGCTTACCTGAAAACGC
26010415 CGCTAACTAA
196 CGCTAACTAA
**
26010425 AAAACGCCAAAAAATTTT-AAACCGAAACGCAACGTTTCGTCTTGAGCTATAGCACCTTTAGTGG
1 AAAACGCC-AAAAATTTTGAAACCGAAACGCAACGTTTCGTCTTGAGCTATAGCACCTTTAGCAG
* * *
26010489 CGCTTA-CCCATAAACGCCGCTATATATCAA-CTTTTAGTGGCG-TTTCTGCTTAAGCGCCGCAA
65 CGCTTAGCCCA-AAACGCCGCTATATAT-AAGCTTTTAGTGGCGCTATC-CCTGAAGCGCCGCAA
*
26010551 AAAATTTGACCAAAACGCATCGTTTC-GGCTTCACGTATA
127 AAAATTTGAACAAAACGCATCG-TTCGGGCTTCACGTATA
26010590 GATTCATTAG
Statistics
Matches: 142, Mismatches: 18, Indels: 10
0.84 0.11 0.06
Matches are distributed among these distances:
204 5 0.04
205 125 0.88
206 12 0.08
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (205 bp):
AAAACGCCAAAAATTTTGAAACCGAAACGCAACGTTTCGTCTTGAGCTATAGCACCTTTAGCAGC
GCTTAGCCCAAAACGCCGCTATATATAAGCTTTTAGTGGCGCTATCCCTGAAGCGCCGCAAAAAA
TTTGAACAAAACGCATCGTTCGGGCTTCACGTATAAAGGCATTAGTGGTGCTTACCTGAAAACGC
CGCTAACTAA
Found at i:26010971 original size:13 final size:14
Alignment explanation
Indices: 26010953--26010993 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
26010943 TTTCCAAAGA
26010953 TATGGTTTAGGA-T
1 TATGGTTTAGGACT
*
26010966 TATGGTTTATGACT
1 TATGGTTTAGGACT
*
26010980 TACGGTTTA-GACT
1 TATGGTTTAGGACT
26010993 T
1 T
26010994 TAGGGGTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 16 0.64
14 9 0.36
ACGTcount: A:0.22, C:0.07, G:0.24, T:0.46
Consensus pattern (14 bp):
TATGGTTTAGGACT
Found at i:26011089 original size:25 final size:26
Alignment explanation
Indices: 26011052--26011103 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
26011042 TTATTTGTGG
*
26011052 TTTATGGGTTTAATG-TTTATGGTTAA
1 TTTATGGGTTTAA-GATTTACGGTTAA
26011078 TTTA-GGGTTTAAGATTTACGGTTAA
1 TTTATGGGTTTAAGATTTACGGTTAA
26011103 T
1 T
26011104 GTCTACGATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 1 0.04
25 19 0.79
26 4 0.17
ACGTcount: A:0.25, C:0.02, G:0.23, T:0.50
Consensus pattern (26 bp):
TTTATGGGTTTAAGATTTACGGTTAA
Found at i:26011180 original size:7 final size:7
Alignment explanation
Indices: 26011168--26011244 Score: 64
Period size: 7 Copynumber: 11.0 Consensus size: 7
26011158 GTTAATTGAC
26011168 GGGTTTA
1 GGGTTTA
26011175 GGGTTTA
1 GGGTTTA
* *
26011182 AGTTTTA
1 GGGTTTA
*
26011189 TGGTTTA
1 GGGTTTA
*
26011196 GGGTTTG
1 GGGTTTA
26011203 GGGTTTA
1 GGGTTTA
*
26011210 GGGTTAA
1 GGGTTTA
*
26011217 AGGTTTA
1 GGGTTTA
** *
26011224 TAGTTTG
1 GGGTTTA
26011231 GGGTTTA
1 GGGTTTA
*
26011238 GGATTTA
1 GGGTTTA
26011245 CAATTAATTA
Statistics
Matches: 53, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
7 53 1.00
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.45
Consensus pattern (7 bp):
GGGTTTA
Found at i:26012185 original size:16 final size:16
Alignment explanation
Indices: 26012159--26012219 Score: 70
Period size: 16 Copynumber: 3.8 Consensus size: 16
26012149 TTGATAAACT
26012159 TTAATTAAAAGATACAA
1 TTAA-TAAAAGATACAA
26012176 TTAATAAAAGATACAA
1 TTAATAAAAGATACAA
* *
26012192 TTAAGAAATAAATA-AA
1 TTAATAAA-AGATACAA
*
26012208 TAAATAAAAGAT
1 TTAATAAAAGAT
26012220 GTGAGATTTA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
15 3 0.08
16 27 0.71
17 8 0.21
ACGTcount: A:0.64, C:0.03, G:0.07, T:0.26
Consensus pattern (16 bp):
TTAATAAAAGATACAA
Found at i:26012483 original size:24 final size:24
Alignment explanation
Indices: 26012455--26012516 Score: 65
Period size: 24 Copynumber: 2.6 Consensus size: 24
26012445 CACTTAGCCG
26012455 AAATTCCCCCCAAATTTCT-CCCCA
1 AAATTCCCCCC-AATTTCTCCCCCA
* * *
26012479 AAATTGCCCCCGATTTTTCCCCCA
1 AAATTCCCCCCAATTTCTCCCCCA
*
26012503 AAAAT-CCCCCAATT
1 AAATTCCCCCCAATT
26012517 CTAGAACCCT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
23 13 0.41
24 19 0.59
ACGTcount: A:0.29, C:0.42, G:0.03, T:0.26
Consensus pattern (24 bp):
AAATTCCCCCCAATTTCTCCCCCA
Found at i:26017764 original size:21 final size:21
Alignment explanation
Indices: 26017738--26017827 Score: 126
Period size: 21 Copynumber: 4.3 Consensus size: 21
26017728 CAACAACTTA
*
26017738 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCCGCAGCGAGGG
* *
26017759 AAGCAGACGCTGCAGCGAGGG
1 AAGCAGAGGCCGCAGCGAGGG
*
26017780 AAGCAGAGGCCGCAGCAAGGG
1 AAGCAGAGGCCGCAGCGAGGG
* *
26017801 AAGCAGAGGCCGCAACGAGAG
1 AAGCAGAGGCCGCAGCGAGGG
26017822 AAGCAG
1 AAGCAG
26017828 CGAGAGAAGC
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 61 1.00
ACGTcount: A:0.33, C:0.22, G:0.43, T:0.01
Consensus pattern (21 bp):
AAGCAGAGGCCGCAGCGAGGG
Found at i:26018315 original size:43 final size:43
Alignment explanation
Indices: 26018268--26018349 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
26018258 CATAGTGGCG
26018268 TTTGTGAAAT-AAGCACCGCTAAAGAACACTACTTTTAGCAGCA
1 TTTGT-AAATGAAGCACCGCTAAAGAACACTACTTTTAGCAGCA
* *
26018311 TTTGTAGATGAAGCACCGCTAAAGAACATTACTTTTAGC
1 TTTGTAAATGAAGCACCGCTAAAGAACACTACTTTTAGC
26018350 GGCGTTTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
42 3 0.08
43 33 0.92
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (43 bp):
TTTGTAAATGAAGCACCGCTAAAGAACACTACTTTTAGCAGCA
Found at i:26018424 original size:43 final size:42
Alignment explanation
Indices: 26018321--26018501 Score: 172
Period size: 43 Copynumber: 4.2 Consensus size: 42
26018311 TTTGTAGATG
* *
26018321 AAGCACCGCTAAAGAACATTA-CTTTTAGCGGCGTTTTTTACC-
1 AAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTTTT-CCT
* *
26018363 AAGCGCCGCTATAGAACAT-TTCTTTTAGCGGCGTTTTCTTCCT
1 AAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTT-TTCCT
* * * *
26018406 AAGCGCTGCTAAAGAACATGATCTTTAGCAGCATTTTTTTCGGT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGC-GTTTTTTC-CT
* *
26018450 -AGCGCCGCTAAAGAACATGAGCTTTAGCGGCGTTTTTTTCTGT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTTC-CT
26018493 AAGCGCCGC
1 AAGCGCCGC
26018502 AAAAAGTTAG
Statistics
Matches: 117, Mismatches: 14, Indels: 14
0.81 0.10 0.10
Matches are distributed among these distances:
42 35 0.30
43 67 0.57
44 15 0.13
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCT
Found at i:26020135 original size:15 final size:15
Alignment explanation
Indices: 26020102--26020134 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
26020092 CTATAAAGAT
26020102 AAAATAAAATATTTA
1 AAAATAAAATATTTA
26020117 AAAAT-AAATATTTA
1 AAAATAAAATATTTA
26020131 AAAA
1 AAAA
26020135 AATATATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAATAAAATATTTA
Found at i:26020141 original size:14 final size:13
Alignment explanation
Indices: 26020101--26020142 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 13
26020091 TCTATAAAGA
26020101 TAAAATAAAATATT
1 TAAAA-AAAATATT
26020115 TAAAAATAAATATT
1 TAAAAA-AAATATT
26020129 TAAAAAAATATATT
1 TAAAAAAA-ATATT
26020143 ATAATTTCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
13 3 0.12
14 23 0.88
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
TAAAAAAAATATT
Found at i:26021692 original size:15 final size:15
Alignment explanation
Indices: 26021672--26021706 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
26021662 ACATATAGAA
26021672 AATTTATATACTTGT
1 AATTTATATACTTGT
26021687 AATTTATATACTTGT
1 AATTTATATACTTGT
26021702 AATTT
1 AATTT
26021707 GGTAGTTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.34, C:0.06, G:0.06, T:0.54
Consensus pattern (15 bp):
AATTTATATACTTGT
Found at i:26024655 original size:2 final size:2
Alignment explanation
Indices: 26024648--26024693 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
26024638 CCCATCCTTT
26024648 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T- TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
26024689 TC TC T
1 TC TC T
26024694 ATGTATGTGT
Statistics
Matches: 43, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 42 0.98
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:26026334 original size:13 final size:13
Alignment explanation
Indices: 26026316--26026340 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26026306 TTCACAATAA
26026316 TTTAATTTTTTAT
1 TTTAATTTTTTAT
26026329 TTTAATTTTTTA
1 TTTAATTTTTTA
26026341 AATTTTAGTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTAATTTTTTAT
Found at i:26031609 original size:16 final size:15
Alignment explanation
Indices: 26031588--26031632 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 15
26031578 AATTGAGTTC
26031588 AAAATATAAATATATA
1 AAAATA-AAATATATA
*
26031604 AAAATAAAAATGAAATA
1 AAAAT-AAAAT-ATATA
26031621 AAAATAAAATAT
1 AAAATAAAATAT
26031633 GATTCGAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
15 1 0.04
16 14 0.56
17 10 0.40
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (15 bp):
AAAATAAAATATATA
Found at i:26031623 original size:17 final size:17
Alignment explanation
Indices: 26031588--26031634 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
26031578 AATTGAGTTC
* *
26031588 AAAATATAAAT-ATATA
1 AAAATAAAAATGAAATA
26031604 AAAATAAAAATGAAATA
1 AAAATAAAAATGAAATA
26031621 AAAATAAAATATGA
1 AAAATAAAA-ATGA
26031635 TTCGAATGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
16 10 0.37
17 13 0.48
18 4 0.15
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.23
Consensus pattern (17 bp):
AAAATAAAAATGAAATA
Found at i:26032476 original size:16 final size:16
Alignment explanation
Indices: 26032455--26032499 Score: 58
Period size: 15 Copynumber: 2.9 Consensus size: 16
26032445 TGACAAACTA
*
26032455 AAAAAATTAAGTGTTG
1 AAAAAATTAAGTGCTG
*
26032471 AAAAAA-TAAGTACTG
1 AAAAAATTAAGTGCTG
26032486 -AAAAATTAAGTGCT
1 AAAAAATTAAGTGCT
26032500 AGATTTAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
14 5 0.20
15 14 0.56
16 6 0.24
ACGTcount: A:0.53, C:0.04, G:0.16, T:0.27
Consensus pattern (16 bp):
AAAAAATTAAGTGCTG
Found at i:26037522 original size:17 final size:18
Alignment explanation
Indices: 26037485--26037524 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
26037475 AAAAAAATTA
26037485 CCATTTCACATCTCATTT
1 CCATTTCACATCTCATTT
* *
26037503 CCATTTCACGTC-CTTTT
1 CCATTTCACATCTCATTT
26037520 CCATT
1 CCATT
26037525 CTAGTATCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 9 0.45
18 11 0.55
ACGTcount: A:0.17, C:0.35, G:0.03, T:0.45
Consensus pattern (18 bp):
CCATTTCACATCTCATTT
Found at i:26043492 original size:14 final size:15
Alignment explanation
Indices: 26043473--26043502 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
26043463 AGCATAATCC
26043473 ATTCAATC-ATATGA
1 ATTCAATCAATATGA
26043487 ATTCAATCAATATGA
1 ATTCAATCAATATGA
26043502 A
1 A
26043503 GCCACGATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.47, C:0.13, G:0.07, T:0.33
Consensus pattern (15 bp):
ATTCAATCAATATGA
Found at i:26044768 original size:14 final size:16
Alignment explanation
Indices: 26044736--26044774 Score: 55
Period size: 14 Copynumber: 2.5 Consensus size: 16
26044726 TAATTAATTA
26044736 TATTATTTATCATATAT
1 TATTATTTA-CATATAT
26044753 TATTATTTA-ATA-AT
1 TATTATTTACATATAT
26044767 TATTATTT
1 TATTATTT
26044775 TGGTTATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 10 0.45
15 3 0.14
17 9 0.41
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (16 bp):
TATTATTTACATATAT
Found at i:26045232 original size:19 final size:18
Alignment explanation
Indices: 26045180--26045251 Score: 58
Period size: 18 Copynumber: 3.9 Consensus size: 18
26045170 AAAATTCTAA
*
26045180 TTTT-TAATTTTTAATAT
1 TTTTATAATTTATAATAT
*
26045197 TTTTATTAAAATT-TAATAAT
1 TTTTA-T-AATTTATAAT-AT
*
26045217 TTTTATAATTTATAATTT
1 TTTTATAATTTATAATAT
* *
26045235 TTTTCTAATATATAATA
1 TTTTATAATTTATAATA
26045252 AGAGCAGGGG
Statistics
Matches: 44, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
17 4 0.09
18 19 0.43
19 10 0.23
20 11 0.25
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTATAATTTATAATAT
Found at i:26045251 original size:37 final size:37
Alignment explanation
Indices: 26045180--26045252 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 37
26045170 AAAATTCTAA
* *
26045180 TTTTTAATTTTTAATATTTTTATTAAAATTTAATAAT
1 TTTTTAATTTATAATATTTTTATTAAAATATAATAAT
*
26045217 TTTTATAATTTATAAT-TTTTT-TCTAATATATAATAA
1 TTTT-TAATTTATAATATTTTTAT-TAAAATATAATAA
26045253 GAGCAGGGGC
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
36 1 0.03
37 20 0.65
38 10 0.32
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.60
Consensus pattern (37 bp):
TTTTTAATTTATAATATTTTTATTAAAATATAATAAT
Found at i:26048352 original size:296 final size:295
Alignment explanation
Indices: 26047794--26048389 Score: 985
Period size: 296 Copynumber: 2.0 Consensus size: 295
26047784 AAAAGGCATT
* *
26047794 GTGAAGGTACGAGTTAAGGTGGATATTTGTGGAGTATGCATTGCATTTTGGTCAAATAAAGGAAC
1 GTGACGGTACGAGTTAAGGTGGATATTTGTGGAGTATGCATTGCATTTCGGTCAAATAAAGGAAC
* *
26047859 AAATAGAGAGTGATGTCGACACGAGAAACATGCGATGTCGCAATGACGCAATGATAAAAACATGG
66 AAATAGAGAGTGATGTCGACACGAGAAACATGCAATGTCGCAATGACACAATGATAAAAACATGG
* *
26047924 GAGAAGTAGAAACGACGTCGCAATGACACGACAGGGAACGTCGCAACGTGGTGATGTGTCATGCA
131 GAGAAGTAGAAACGACGTCGCAATGACACGACAGGGAACGTCGCAACATGGCGATGTGTCATGCA
* * *
26047989 ATTTTCTATATTTTCTTCTCCTAGTTACACTCTGAGTATTTTTTTCAGTCGTTGAAACGACAAAA
196 ATTTTCTAGATTTTCTTCTCCTAGTTACACACTGAGTATTTTTTTCAGTCGTTGAAACGAAAAAA
*
26048054 ATGTGCAAGTGTACACAATCGTAAAAAATAATAAA
261 ATGTGCAAGTGTACACAATCGCAAAAAATAATAAA
* * * *
26048089 GTGACGGTATGAGTTATGGTGGATATTTGTGGAGTATGCATTGCATTTCGGTCAAATCAAGGCAC
1 GTGACGGTACGAGTTAAGGTGGATATTTGTGGAGTATGCATTGCATTTCGGTCAAATAAAGGAAC
* * * *
26048154 AAATAGAGAGTGTTGTCGACACGAGAAGCCATGCAATGTCGCAATGACACGATGATGAAAACATG
66 AAATAGAGAGTGATGTCGACACGAGAA-ACATGCAATGTCGCAATGACACAATGATAAAAACATG
* *
26048219 GGAGAAGTAGAAATGACGTCGCAATGACACGACAGGGAATGTCGCAACATGGCGATGTGTCATGC
130 GGAGAAGTAGAAACGACGTCGCAATGACACGACAGGGAACGTCGCAACATGGCGATGTGTCATGC
*
26048284 AATTTTCTAGATTTTCTTCTCCTAGTTACACACTGAGTATTTTTTTCAGTCGTTGAAATGAAAAA
195 AATTTTCTAGATTTTCTTCTCCTAGTTACACACTGAGTATTTTTTTCAGTCGTTGAAACGAAAAA
*
26048349 AATGTGCAAGTGTACACAATCGCAAAAAGTAATAAA
260 AATGTGCAAGTGTACACAATCGCAAAAAATAATAAA
26048385 GTGAC
1 GTGAC
26048390 AAGTAAATGT
Statistics
Matches: 278, Mismatches: 22, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
295 85 0.31
296 193 0.69
ACGTcount: A:0.34, C:0.15, G:0.24, T:0.27
Consensus pattern (295 bp):
GTGACGGTACGAGTTAAGGTGGATATTTGTGGAGTATGCATTGCATTTCGGTCAAATAAAGGAAC
AAATAGAGAGTGATGTCGACACGAGAAACATGCAATGTCGCAATGACACAATGATAAAAACATGG
GAGAAGTAGAAACGACGTCGCAATGACACGACAGGGAACGTCGCAACATGGCGATGTGTCATGCA
ATTTTCTAGATTTTCTTCTCCTAGTTACACACTGAGTATTTTTTTCAGTCGTTGAAACGAAAAAA
ATGTGCAAGTGTACACAATCGCAAAAAATAATAAA
Found at i:26049967 original size:101 final size:101
Alignment explanation
Indices: 26049792--26049993 Score: 359
Period size: 101 Copynumber: 2.0 Consensus size: 101
26049782 CAACGAGTAA
* * *
26049792 TCTGATCTACTATCGAGCCAAGCTGCAATCTTTGATGACTCCGACCTTTACGTATTACACCCAGT
1 TCTGATCTACTATCGAGCCAAGCTACAATCTTTGATGACTCCGACCTCTACGTAATACACCCAGT
*
26049857 TGACTATGAATGGAAGGAATCCCCAAATAGTTTTGG
66 TGACTATGAATGGAAGGAATCCCCAAACAGTTTTGG
*
26049893 TCTGATCTACTATCGAGCCAAGCTACAATCTTTGATGACTCCGACCTCTACGTAATCCACCCAGT
1 TCTGATCTACTATCGAGCCAAGCTACAATCTTTGATGACTCCGACCTCTACGTAATACACCCAGT
26049958 TGACTATGAATGGAAGGAATCCCCAAACAGTTTTGG
66 TGACTATGAATGGAAGGAATCCCCAAACAGTTTTGG
26049994 AGAAGACTTT
Statistics
Matches: 96, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 96 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.28
Consensus pattern (101 bp):
TCTGATCTACTATCGAGCCAAGCTACAATCTTTGATGACTCCGACCTCTACGTAATACACCCAGT
TGACTATGAATGGAAGGAATCCCCAAACAGTTTTGG
Found at i:26061794 original size:13 final size:13
Alignment explanation
Indices: 26061776--26061801 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26061766 AGCTTGGTAG
26061776 ATTGGCTAGGCAA
1 ATTGGCTAGGCAA
26061789 ATTGGCTAGGCAA
1 ATTGGCTAGGCAA
26061802 TCATCATATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (13 bp):
ATTGGCTAGGCAA
Found at i:26066174 original size:19 final size:19
Alignment explanation
Indices: 26066145--26066181 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
26066135 ACCTAACACG
26066145 AATTAAATTTAAACCATATT
1 AATTAAATTTAAA-CATATT
26066165 AATT-AATTTAAACATAT
1 AATTAAATTTAAACATAT
26066182 CAACATCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 8 0.47
20 4 0.24
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (19 bp):
AATTAAATTTAAACATATT
Found at i:26067718 original size:18 final size:18
Alignment explanation
Indices: 26067643--26067724 Score: 62
Period size: 18 Copynumber: 4.4 Consensus size: 18
26067633 TGTTAAAACA
26067643 AAATATTAATCATTTTAC
1 AAATATTAATCATTTTAC
* *
26067661 AAATGTTAGTGATCAATTGTA-
1 AAATATTA---ATC-ATTTTAC
* *
26067682 AAATTTTCAA--ATATTAC
1 AAATATT-AATCATTTTAC
26067699 AAATATTAATCATTTTAC
1 AAATATTAATCATTTTAC
26067717 AAATATTA
1 AAATATTA
26067725 GTGATCAAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 16
0.68 0.10 0.22
Matches are distributed among these distances:
16 6 0.12
17 6 0.12
18 21 0.43
19 1 0.02
21 9 0.18
22 6 0.12
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (18 bp):
AAATATTAATCATTTTAC
Found at i:26082349 original size:2 final size:2
Alignment explanation
Indices: 26082342--26082372 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
26082332 TTATGAAAAT
*
26082342 TA TA TA TA TA TA TA TA TA TA TA TC TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
26082373 CCTCAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26085963 original size:16 final size:16
Alignment explanation
Indices: 26085938--26085971 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26085928 TGTGTTTTGC
* *
26085938 TTTGATTGCATGGCAT
1 TTTGACTGCATAGCAT
26085954 TTTGACTGCATAGCAT
1 TTTGACTGCATAGCAT
26085970 TT
1 TT
26085972 CATCCTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.44
Consensus pattern (16 bp):
TTTGACTGCATAGCAT
Found at i:26086337 original size:16 final size:16
Alignment explanation
Indices: 26086312--26086345 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26086302 TGTGTTTTGC
* *
26086312 TTTGATTGCATGGCAT
1 TTTGACTGCATAGCAT
26086328 TTTGACTGCATAGCAT
1 TTTGACTGCATAGCAT
26086344 TT
1 TT
26086346 CATCCTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.44
Consensus pattern (16 bp):
TTTGACTGCATAGCAT
Found at i:26086520 original size:374 final size:374
Alignment explanation
Indices: 26085831--26086578 Score: 1496
Period size: 374 Copynumber: 2.0 Consensus size: 374
26085821 CTTGCCCTAG
26085831 GTAGAACTATACCAAACCCTAGTAGATTCCTGAATAGGTGCTATATTATTTCCTGTTTGTACTGA
1 GTAGAACTATACCAAACCCTAGTAGATTCCTGAATAGGTGCTATATTATTTCCTGTTTGTACTGA
26085896 ATTCTGTTTTTTATACATGATACTAACTTTTGTGTGTTTTGCTTTGATTGCATGGCATTTTGACT
66 ATTCTGTTTTTTATACATGATACTAACTTTTGTGTGTTTTGCTTTGATTGCATGGCATTTTGACT
26085961 GCATAGCATTTCATCCTAAAAGGCGTTGGTTCATATTCGGTTACTAGATAAAGAGCTTATCATGG
131 GCATAGCATTTCATCCTAAAAGGCGTTGGTTCATATTCGGTTACTAGATAAAGAGCTTATCATGG
26086026 AAAATGGATTTCTTGATAAGGTGGAGGATAATGTGGCTGTTTAGGCCTGGTCTGAGACAACACAG
196 AAAATGGATTTCTTGATAAGGTGGAGGATAATGTGGCTGTTTAGGCCTGGTCTGAGACAACACAG
26086091 CGAGGAAAAGGTGATAGTTTGGCCGAAGGATATGTATCAGAGTTGTGGGACTTCACTCGTATTAG
261 CGAGGAAAAGGTGATAGTTTGGCCGAAGGATATGTATCAGAGTTGTGGGACTTCACTCGTATTAG
26086156 TGTAACCCAGAATAGTCTGCAAGAATTGAAGGAAATCTGGGATCAGTCC
326 TGTAACCCAGAATAGTCTGCAAGAATTGAAGGAAATCTGGGATCAGTCC
26086205 GTAGAACTATACCAAACCCTAGTAGATTCCTGAATAGGTGCTATATTATTTCCTGTTTGTACTGA
1 GTAGAACTATACCAAACCCTAGTAGATTCCTGAATAGGTGCTATATTATTTCCTGTTTGTACTGA
26086270 ATTCTGTTTTTTATACATGATACTAACTTTTGTGTGTTTTGCTTTGATTGCATGGCATTTTGACT
66 ATTCTGTTTTTTATACATGATACTAACTTTTGTGTGTTTTGCTTTGATTGCATGGCATTTTGACT
26086335 GCATAGCATTTCATCCTAAAAGGCGTTGGTTCATATTCGGTTACTAGATAAAGAGCTTATCATGG
131 GCATAGCATTTCATCCTAAAAGGCGTTGGTTCATATTCGGTTACTAGATAAAGAGCTTATCATGG
26086400 AAAATGGATTTCTTGATAAGGTGGAGGATAATGTGGCTGTTTAGGCCTGGTCTGAGACAACACAG
196 AAAATGGATTTCTTGATAAGGTGGAGGATAATGTGGCTGTTTAGGCCTGGTCTGAGACAACACAG
26086465 CGAGGAAAAGGTGATAGTTTGGCCGAAGGATATGTATCAGAGTTGTGGGACTTCACTCGTATTAG
261 CGAGGAAAAGGTGATAGTTTGGCCGAAGGATATGTATCAGAGTTGTGGGACTTCACTCGTATTAG
26086530 TGTAACCCAGAATAGTCTGCAAGAATTGAAGGAAATCTGGGATCAGTCC
326 TGTAACCCAGAATAGTCTGCAAGAATTGAAGGAAATCTGGGATCAGTCC
26086579 AATGATGAGG
Statistics
Matches: 374, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
374 374 1.00
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (374 bp):
GTAGAACTATACCAAACCCTAGTAGATTCCTGAATAGGTGCTATATTATTTCCTGTTTGTACTGA
ATTCTGTTTTTTATACATGATACTAACTTTTGTGTGTTTTGCTTTGATTGCATGGCATTTTGACT
GCATAGCATTTCATCCTAAAAGGCGTTGGTTCATATTCGGTTACTAGATAAAGAGCTTATCATGG
AAAATGGATTTCTTGATAAGGTGGAGGATAATGTGGCTGTTTAGGCCTGGTCTGAGACAACACAG
CGAGGAAAAGGTGATAGTTTGGCCGAAGGATATGTATCAGAGTTGTGGGACTTCACTCGTATTAG
TGTAACCCAGAATAGTCTGCAAGAATTGAAGGAAATCTGGGATCAGTCC
Found at i:26097010 original size:14 final size:14
Alignment explanation
Indices: 26096993--26097023 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
26096983 ATCCAAACAA
26096993 TAATAACAAAATAG
1 TAATAACAAAATAG
*
26097007 TAATAACATAATAG
1 TAATAACAAAATAG
26097021 TAA
1 TAA
26097024 GATGGTAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.06, G:0.06, T:0.26
Consensus pattern (14 bp):
TAATAACAAAATAG
Found at i:26097425 original size:28 final size:27
Alignment explanation
Indices: 26097390--26097451 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
26097380 TTTTTTTTTG
* * *
26097390 AATT-TTTTACTTTTTAAAATTTTTTAA
1 AATTCTTTTACATTATAAAATTTTAT-A
*
26097417 AATTCTTTTACATTATAAGATTTTATA
1 AATTCTTTTACATTATAAAATTTTATA
26097444 AATTCTTT
1 AATTCTTT
26097452 ATAATTTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 13 0.43
28 17 0.57
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.58
Consensus pattern (27 bp):
AATTCTTTTACATTATAAAATTTTATA
Found at i:26111536 original size:28 final size:28
Alignment explanation
Indices: 26111504--26111559 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
26111494 ATGAAAAGTT
26111504 AGCAAAAGATATGTTAACATAATCATCA
1 AGCAAAAGATATGTTAACATAATCATCA
26111532 AGCAAAAGATATGTTAACATAATCATCA
1 AGCAAAAGATATGTTAACATAATCATCA
26111560 CCCCTCGAAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.50, C:0.14, G:0.11, T:0.25
Consensus pattern (28 bp):
AGCAAAAGATATGTTAACATAATCATCA
Found at i:26112284 original size:3 final size:3
Alignment explanation
Indices: 26112276--26112335 Score: 120
Period size: 3 Copynumber: 20.0 Consensus size: 3
26112266 AGTAGACATT
26112276 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
26112324 TTC TTC TTC TTC
1 TTC TTC TTC TTC
26112336 ATGCATCAAA
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TTC
Found at i:26113729 original size:58 final size:60
Alignment explanation
Indices: 26113648--26113763 Score: 155
Period size: 61 Copynumber: 1.9 Consensus size: 60
26113638 ATCACTTTAA
*** * *
26113648 TATTAAATTAATTTAATACTTA-T-CATGATAAGTATTAGATTAAATTTAATATTAACTC
1 TATTAAATTAAAAAAATACTTACTACATGATAAATATTAAATTAAATTTAATATTAACTC
*
26113706 TATTAAATTAAAAAAATATTTATCTACATGATAAATATTAAATTAAATTTAATATTAA
1 TATTAAATTAAAAAAATACTTA-CTACATGATAAATATTAAATTAAATTTAATATTAA
26113764 ATTTATTACA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
58 18 0.37
60 1 0.02
61 30 0.61
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.43
Consensus pattern (60 bp):
TATTAAATTAAAAAAATACTTACTACATGATAAATATTAAATTAAATTTAATATTAACTC
Found at i:26115476 original size:14 final size:14
Alignment explanation
Indices: 26115457--26115484 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26115447 CCCAATAGGA
26115457 CACATTTGTATTTT
1 CACATTTGTATTTT
26115471 CACATTTGTATTTT
1 CACATTTGTATTTT
26115485 GGTTATACTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.57
Consensus pattern (14 bp):
CACATTTGTATTTT
Found at i:26117295 original size:8 final size:9
Alignment explanation
Indices: 26117282--26117331 Score: 50
Period size: 8 Copynumber: 5.3 Consensus size: 9
26117272 GTAGTTAAAG
26117282 TAAGTTAA-
1 TAAGTTAAT
26117290 TAAGTTAAT
1 TAAGTTAAT
26117299 TAAGTATTAAAT
1 TAAG--TT-AAT
26117311 TAA-TTAAT
1 TAAGTTAAT
26117319 TAATGTTAAT
1 TAA-GTTAAT
26117329 TAA
1 TAA
26117332 ACTTAAAACA
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
8 14 0.39
9 6 0.17
10 8 0.22
11 2 0.06
12 6 0.17
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (9 bp):
TAAGTTAAT
Found at i:26120553 original size:20 final size:18
Alignment explanation
Indices: 26120514--26120554 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
26120504 AGTTCGGGAC
*
26120514 TGAAACTTCTAAAATTTT
1 TGAAACTTCTAAAATATT
26120532 TGAAACTTCTGATAAATATT
1 TGAAACTTCT-A-AAATATT
26120552 TGA
1 TGA
26120555 GGCATAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 10 0.50
19 1 0.05
20 9 0.45
ACGTcount: A:0.39, C:0.10, G:0.10, T:0.41
Consensus pattern (18 bp):
TGAAACTTCTAAAATATT
Found at i:26130646 original size:16 final size:16
Alignment explanation
Indices: 26130606--26130640 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
26130596 ACAAACGGTC
*
26130606 ATAATTATTCAAGTTG
1 ATAATTATTCAAGTAG
26130622 ATAATTATTCAAGTAG
1 ATAATTATTCAAGTAG
26130638 ATA
1 ATA
26130641 TCTATTGAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40
Consensus pattern (16 bp):
ATAATTATTCAAGTAG
Found at i:26131922 original size:21 final size:22
Alignment explanation
Indices: 26131874--26131926 Score: 65
Period size: 21 Copynumber: 2.4 Consensus size: 22
26131864 CTTTCTTTTT
*
26131874 TATGATATATATTTACTTTGAGA
1 TATGATAT-TATTTACTTTGAAA
26131897 TATGATATTATTTA-TTT-AAA
1 TATGATATTATTTACTTTGAAA
26131917 TCATGATATT
1 T-ATGATATT
26131927 TGTAATCAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 3 0.11
21 11 0.39
22 6 0.21
23 8 0.29
ACGTcount: A:0.36, C:0.04, G:0.09, T:0.51
Consensus pattern (22 bp):
TATGATATTATTTACTTTGAAA
Found at i:26139047 original size:25 final size:25
Alignment explanation
Indices: 26139011--26139079 Score: 93
Period size: 25 Copynumber: 2.8 Consensus size: 25
26139001 GCCCATTTTC
* * *
26139011 ACAGCTTATGTGAACATACCGATTT
1 ACAGCTCATGTGAGCATACCAATTT
* *
26139036 ATAGCTCGTGTGAGCATACCAATTT
1 ACAGCTCATGTGAGCATACCAATTT
26139061 ACAGCTCATGTGAGCATAC
1 ACAGCTCATGTGAGCATAC
26139080 ATGTACAGGA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (25 bp):
ACAGCTCATGTGAGCATACCAATTT
Found at i:26140304 original size:12 final size:12
Alignment explanation
Indices: 26140287--26140322 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
26140277 GTTAGACTGT
26140287 TACACGGCCTAG
1 TACACGGCCTAG
* *
26140299 TACACGACCTGG
1 TACACGGCCTAG
26140311 TACACGGCCTAG
1 TACACGGCCTAG
26140323 CAACCGGGCG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.25, C:0.33, G:0.25, T:0.17
Consensus pattern (12 bp):
TACACGGCCTAG
Found at i:26141438 original size:30 final size:30
Alignment explanation
Indices: 26141399--26141459 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
26141389 TCCTTACAAG
*
26141399 TAAGCCCTTTAACTTGAAAATCATTTTTAT
1 TAAGCCCTTTAACTTAAAAATCATTTTTAT
* *
26141429 TAAGTCCTTTAACTTAAAAATCCTTTTTAT
1 TAAGCCCTTTAACTTAAAAATCATTTTTAT
26141459 T
1 T
26141460 TCATCATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.33, C:0.16, G:0.05, T:0.46
Consensus pattern (30 bp):
TAAGCCCTTTAACTTAAAAATCATTTTTAT
Found at i:26142032 original size:36 final size:36
Alignment explanation
Indices: 26141948--26142058 Score: 125
Period size: 36 Copynumber: 3.1 Consensus size: 36
26141938 CATCATCAGC
* * *
26141948 CCAACCATAACACATCAAATGCTCACACGAGCCAAT
1 CCAACCATAACACATCAAATGCTCACAAGAGCTAGT
** * *
26141984 CCTTCCAAAACACATCAAATGCTCACAAGAGCTGGT
1 CCAACCATAACACATCAAATGCTCACAAGAGCTAGT
* * *
26142020 CCAACCGTAACACA-CCAATGCTCATAAGAGCTAGT
1 CCAACCATAACACATCAAATGCTCACAAGAGCTAGT
26142055 CCAA
1 CCAA
26142059 GTGAAACACG
Statistics
Matches: 61, Mismatches: 14, Indels: 1
0.80 0.18 0.01
Matches are distributed among these distances:
35 22 0.36
36 39 0.64
ACGTcount: A:0.39, C:0.33, G:0.12, T:0.16
Consensus pattern (36 bp):
CCAACCATAACACATCAAATGCTCACAAGAGCTAGT
Found at i:26142049 original size:35 final size:35
Alignment explanation
Indices: 26141991--26142107 Score: 144
Period size: 35 Copynumber: 3.3 Consensus size: 35
26141981 AATCCTTCCA
* * *
26141991 AAACACATCAAATGCTCACAAGAGCTGGTCCAACCG
1 AAACACA-CCAATGCTCATAAGAGCTAGTCCAACCG
* **
26142027 TAACACACCAATGCTCATAAGAGCTAGTCCAAGTG
1 AAACACACCAATGCTCATAAGAGCTAGTCCAACCG
* *
26142062 AAACACGCCAATGCTCATAAAAGCTAGTCCAACCG
1 AAACACACCAATGCTCATAAGAGCTAGTCCAACCG
*
26142097 AAACATACCAA
1 AAACACACCAA
26142108 ACAGAGAGTA
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
35 62 0.91
36 6 0.09
ACGTcount: A:0.41, C:0.29, G:0.15, T:0.15
Consensus pattern (35 bp):
AAACACACCAATGCTCATAAGAGCTAGTCCAACCG
Found at i:26147210 original size:23 final size:21
Alignment explanation
Indices: 26147183--26147228 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 21
26147173 AGAGAGAAAC
26147183 AAAAGAGAACGAAAAAAAAAATT
1 AAAA-AGAAC-AAAAAAAAAATT
*
26147206 -AAAAGAACATAAAAAAAATT
1 AAAAAGAACAAAAAAAAAATT
26147226 AAA
1 AAA
26147229 TTACTCAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 11 0.52
21 7 0.33
22 3 0.14
ACGTcount: A:0.76, C:0.04, G:0.09, T:0.11
Consensus pattern (21 bp):
AAAAAGAACAAAAAAAAAATT
Found at i:26149987 original size:62 final size:63
Alignment explanation
Indices: 26149864--26149988 Score: 234
Period size: 62 Copynumber: 2.0 Consensus size: 63
26149854 TCAGGTGTCT
26149864 CAACTCCAGTGGGGGTACTGAAGTCAAAAAGGAAAAAATTAGTCATCAATAAAATAGTTAATA
1 CAACTCCAGTGGGGGTACTGAAGTCAAAAAGGAAAAAATTAGTCATCAATAAAATAGTTAATA
*
26149927 CAACTCCAGTGGGGGTACTGAAGTC-AAAAGGGAAAAATTAGTCATCAATAAAATAGTTAATA
1 CAACTCCAGTGGGGGTACTGAAGTCAAAAAGGAAAAAATTAGTCATCAATAAAATAGTTAATA
26149989 ATCCACTAAC
Statistics
Matches: 61, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
62 36 0.59
63 25 0.41
ACGTcount: A:0.45, C:0.13, G:0.20, T:0.22
Consensus pattern (63 bp):
CAACTCCAGTGGGGGTACTGAAGTCAAAAAGGAAAAAATTAGTCATCAATAAAATAGTTAATA
Found at i:26150185 original size:6 final size:6
Alignment explanation
Indices: 26150174--26150212 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
26150164 CTTCAATCTG
* * *
26150174 CTCTTC CTCTTC CTCTTC TTCTTC TTCTTC CTCCTC CTC
1 CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC CTCTTC CTC
26150213 CTCTTCCTCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (6 bp):
CTCTTC
Found at i:26150189 original size:27 final size:24
Alignment explanation
Indices: 26150156--26150218 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 24
26150146 CATCCTCCAA
26150156 CTCCTCTTCTTCAATCTGCTCTTCCTC
1 CTCCTCTTCTTC-ATCT--TCTTCCTC
* *
26150183 TTCCTCTTCTTCTTCTTCTTCCTC
1 CTCCTCTTCTTCATCTTCTTCCTC
*
26150207 CTCCTCCTCTTC
1 CTCCTCTTCTTC
26150219 CTCCAAATCA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
24 18 0.56
26 3 0.09
27 11 0.34
ACGTcount: A:0.03, C:0.46, G:0.02, T:0.49
Consensus pattern (24 bp):
CTCCTCTTCTTCATCTTCTTCCTC
Found at i:26156489 original size:17 final size:17
Alignment explanation
Indices: 26156469--26156512 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
26156459 TAATTTTATC
*
26156469 ATAATATTAAATTAAAA
1 ATAATAATAAATTAAAA
* *
26156486 ATAATTAATAATTTAAAT
1 ATAA-TAATAAATTAAAA
26156504 ATAATAATA
1 ATAATAATA
26156513 TCTAACAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
ATAATAATAAATTAAAA
Found at i:26159598 original size:18 final size:18
Alignment explanation
Indices: 26159577--26159639 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 18
26159567 GGTTGATAAC
26159577 GAAGAGGAAGTTGAGAAT
1 GAAGAGGAAGTTGAGAAT
** *
26159595 GAAGAGAGAA-AAGAGAAC
1 GAAGAG-GAAGTTGAGAAT
* *
26159613 AAAGAGGGAGTTGAGAAT
1 GAAGAGGAAGTTGAGAAT
26159631 GAAGAGGAA
1 GAAGAGGAA
26159640 TCTGAAACTG
Statistics
Matches: 33, Mismatches: 10, Indels: 4
0.70 0.21 0.09
Matches are distributed among these distances:
17 2 0.06
18 28 0.85
19 3 0.09
ACGTcount: A:0.51, C:0.02, G:0.38, T:0.10
Consensus pattern (18 bp):
GAAGAGGAAGTTGAGAAT
Found at i:26160143 original size:25 final size:25
Alignment explanation
Indices: 26160109--26160157 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
26160099 ATAACGCTCC
26160109 ACATACTTGTGTTGTTACAAGAATT
1 ACATACTTGTGTTGTTACAAGAATT
26160134 ACATACTTGTGTTGTTACAAGAAT
1 ACATACTTGTGTTGTTACAAGAAT
26160158 GATGGCGCAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (25 bp):
ACATACTTGTGTTGTTACAAGAATT
Found at i:26161882 original size:33 final size:33
Alignment explanation
Indices: 26161845--26161916 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 33
26161835 TGAGAAAAAG
* * * *
26161845 TGAGAACAAAATAGTTGAGAGAATATGATTGAA
1 TGAGAACAAAAGAATTGACAGAATAGGATTGAA
** *
26161878 TGAGATTAAGAGAATTGACAGAATAGGATTGAA
1 TGAGAACAAAAGAATTGACAGAATAGGATTGAA
26161911 TGAGAA
1 TGAGAA
26161917 AAATGAAAAT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.47, C:0.03, G:0.26, T:0.24
Consensus pattern (33 bp):
TGAGAACAAAAGAATTGACAGAATAGGATTGAA
Found at i:26163894 original size:6 final size:6
Alignment explanation
Indices: 26163876--26163908 Score: 57
Period size: 6 Copynumber: 5.3 Consensus size: 6
26163866 ATGGAATTAT
26163876 GGAAAG TGGAAAG GGAAAG GGAAAG GGAAAG GG
1 GGAAAG -GGAAAG GGAAAG GGAAAG GGAAAG GG
26163909 TCTTGGAAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.45, C:0.00, G:0.52, T:0.03
Consensus pattern (6 bp):
GGAAAG
Found at i:26164126 original size:13 final size:13
Alignment explanation
Indices: 26164108--26164163 Score: 82
Period size: 13 Copynumber: 4.5 Consensus size: 13
26164098 TAGATTTTTC
26164108 CTAAATATTATCA
1 CTAAATATTATCA
*
26164121 CTAAATA--AT-T
1 CTAAATATTATCA
26164131 CTAAATATTATCA
1 CTAAATATTATCA
26164144 CTAAATATTATCA
1 CTAAATATTATCA
26164157 CTAAATA
1 CTAAATA
26164164 ATTCAAAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
10 7 0.18
11 2 0.05
12 2 0.05
13 27 0.71
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:26166082 original size:17 final size:17
Alignment explanation
Indices: 26166047--26166084 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 17
26166037 GTCAAAATGC
26166047 AAAAGTGGTATCGATATA
1 AAAAGTGGTATCGA-ATA
26166065 AAAAGATGGTATCG-ATA
1 AAAAG-TGGTATCGAATA
26166082 AAA
1 AAA
26166085 TTCAATAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.32
18 5 0.26
19 8 0.42
ACGTcount: A:0.50, C:0.05, G:0.21, T:0.24
Consensus pattern (17 bp):
AAAAGTGGTATCGAATA
Found at i:26167389 original size:9 final size:9
Alignment explanation
Indices: 26167375--26167411 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
26167365 TATAGTTTGA
26167375 TATTCGAAT
1 TATTCGAAT
26167384 TATTCGAAT
1 TATTCGAAT
*
26167393 TATTCGAGT
1 TATTCGAAT
26167402 TATTCGAAT
1 TATTCGAAT
26167411 T
1 T
26167412 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:26172575 original size:3 final size:3
Alignment explanation
Indices: 26172555--26172592 Score: 58
Period size: 3 Copynumber: 12.7 Consensus size: 3
26172545 AATAAGGAGG
* *
26172555 AGA AGA GGA AGA ACA AGA AGA AGA AGA AGA AGA AGA AG
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AG
26172593 GATTTTAATG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.63, C:0.03, G:0.34, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:26172916 original size:23 final size:24
Alignment explanation
Indices: 26172889--26172934 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
26172879 TTTCAATTTC
26172889 AAAATTGACAA-AA-TTAATTTTTT
1 AAAATTGA-AATAATTTAATTTTTT
26172912 AAAATTGAAATAATTTAATTTTT
1 AAAATTGAAATAATTTAATTTTT
26172935 ATTAATTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 2 0.10
23 10 0.48
24 9 0.43
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (24 bp):
AAAATTGAAATAATTTAATTTTTT
Found at i:26173019 original size:15 final size:16
Alignment explanation
Indices: 26172991--26173020 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
26172981 ATATCTTTCA
26172991 TCAATTGTATATAATT
1 TCAATTGTATATAATT
26173007 TCAATTG-ATATAAT
1 TCAATTGTATATAAT
26173021 AACAAATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (16 bp):
TCAATTGTATATAATT
Found at i:26173552 original size:10 final size:10
Alignment explanation
Indices: 26173511--26173624 Score: 51
Period size: 10 Copynumber: 11.4 Consensus size: 10
26173501 AAAAATTCAT
26173511 AAAATTATTTA
1 AAAATTA-TTA
*
26173522 AAAATT-TAA
1 AAAATTATTA
*
26173531 AATAAATATTA
1 AA-AATTATTA
26173542 AAAATTATTA
1 AAAATTATTA
26173552 AAAACTTA-TA
1 AAAA-TTATTA
**
26173562 AATGTTA-TA
1 AAAATTATTA
*
26173571 AAAACGTA-TA
1 AAAA-TTATTA
* *
26173581 AAATTTCTTA
1 AAAATTATTA
*
26173591 TAAATT-TTA
1 AAAATTATTA
26173600 ATAAATTA-TA
1 A-AAATTATTA
*
26173610 AAAAATATTA
1 AAAATTATTA
26173620 TAAAA
1 -AAAA
26173625 ATAAGGCTTA
Statistics
Matches: 78, Mismatches: 16, Indels: 18
0.70 0.14 0.16
Matches are distributed among these distances:
9 20 0.26
10 41 0.53
11 17 0.22
ACGTcount: A:0.58, C:0.03, G:0.02, T:0.38
Consensus pattern (10 bp):
AAAATTATTA
Found at i:26173799 original size:86 final size:89
Alignment explanation
Indices: 26173660--26173828 Score: 256
Period size: 86 Copynumber: 1.9 Consensus size: 89
26173650 TTCAAACTTA
*
26173660 AAAAAAAAGCAATTAAGCCCTTCCTTTTTTTTGCACTTAATTGAGCACTTGAACTTTCAAAATGC
1 AAAAAAAAGCAATTAAGCCC-TCCTTTTTTTTGCACTCAATTGAGCACTTGAACTTTCAAAATGC
*
26173725 ATCAAAAAGTCCCTCAAACCTCTTC
65 ATCAAAAAGACCCTCAAACCTCTTC
* *
26173750 AAAAAAAA-CAATTAAG-CC-CCTATTTTTTT-CACTCAATTGGGTACTTGAACTTTCAAAATGC
1 AAAAAAAAGCAATTAAGCCCTCCT-TTTTTTTGCACTCAATTGAGCACTTGAACTTTCAAAATGC
26173811 ATCAAAAAGACCCTCAAA
65 ATCAAAAAGACCCTCAAA
26173829 AGTGACATTT
Statistics
Matches: 74, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
86 49 0.66
87 7 0.09
88 2 0.03
89 8 0.11
90 8 0.11
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (89 bp):
AAAAAAAAGCAATTAAGCCCTCCTTTTTTTTGCACTCAATTGAGCACTTGAACTTTCAAAATGCA
TCAAAAAGACCCTCAAACCTCTTC
Found at i:26178124 original size:21 final size:21
Alignment explanation
Indices: 26178098--26178147 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
26178088 GGCTAGAGAA
* *
26178098 TTCTACTGGTAGAATTGGGAG
1 TTCTACCGGTAGAACTGGGAG
26178119 TTCTACCGGTAGAACTGGGAG
1 TTCTACCGGTAGAACTGGGAG
26178140 TTCTACCG
1 TTCTACCG
26178148 ATACAACTCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (21 bp):
TTCTACCGGTAGAACTGGGAG
Found at i:26178155 original size:21 final size:21
Alignment explanation
Indices: 26178113--26178186 Score: 78
Period size: 21 Copynumber: 3.5 Consensus size: 21
26178103 CTGGTAGAAT
* *
26178113 TGGGAGTTCTACCGGTAGAAC
1 TGGGAGTTCTACCGATACAAC
26178134 TGGGAGTTCTACCGATACAAC
1 TGGGAGTTCTACCGATACAAC
* *
26178155 TCTGG-GTTCTACTGATACAAC
1 T-GGGAGTTCTACCGATACAAC
* *
26178176 TTGGACTTCTA
1 TGGGAGTTCTA
26178187 TTGGTAGAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
20 3 0.07
21 41 0.89
22 2 0.04
ACGTcount: A:0.24, C:0.22, G:0.24, T:0.30
Consensus pattern (21 bp):
TGGGAGTTCTACCGATACAAC
Found at i:26186445 original size:41 final size:41
Alignment explanation
Indices: 26186336--26186452 Score: 164
Period size: 41 Copynumber: 2.9 Consensus size: 41
26186326 TAGACTTATC
* *
26186336 GTCCGAATTATTTCACCGGCACAAAGCCTGCTAGACATAAA
1 GTCCGAATAACTTCACCGGCACAAAGCCTGCTAGACATAAA
* *
26186377 GTCCGAATTATTTCACCGGCACAAAGCCTGCTAGACATAAA
1 GTCCGAATAACTTCACCGGCACAAAGCCTGCTAGACATAAA
* *
26186418 GTCCGAATAACTTCATCGGC-CTTAAGCCTGCTAGA
1 GTCCGAATAACTTCACCGGCAC-AAAGCCTGCTAGA
26186453 TTTTAAACCT
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
40 1 0.01
41 70 0.99
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (41 bp):
GTCCGAATAACTTCACCGGCACAAAGCCTGCTAGACATAAA
Found at i:26192214 original size:25 final size:25
Alignment explanation
Indices: 26192186--26192354 Score: 132
Period size: 25 Copynumber: 6.8 Consensus size: 25
26192176 TCCTGATATA
*
26192186 TGGCTCTCTTGAGCTTCCCATTATT
1 TGGCTCTCATGAGCTTCCCATTATT
*
26192211 TGGCTCTCACGAGCTT-CC-TTATAAT
1 TGGCTCTCATGAGCTTCCCATTAT--T
26192236 TGGCTCTCATGAGCTTCCCATTATT
1 TGGCTCTCATGAGCTTCCCATTATT
** ** *
26192261 TGGCTCTCACAAGCTTCTTGA-TAAT
1 TGGCTCTCATGAGCTTC-CCATTATT
* *
26192286 TGGCTCTCATAAGCTTCCCTATTA-A
1 TGGCTCTCATGAGCTTCCC-ATTATT
* * * *
26192311 TGGATTTTC-GGAGCTTCCCAATATT
1 TGG-CTCTCATGAGCTTCCCATTATT
*
26192336 TGGCTCTCTTGAGCTTCCC
1 TGGCTCTCATGAGCTTCCC
26192355 GTTTACGTCT
Statistics
Matches: 113, Mismatches: 21, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
23 4 0.04
24 8 0.07
25 89 0.79
26 8 0.07
27 4 0.04
ACGTcount: A:0.18, C:0.27, G:0.17, T:0.38
Consensus pattern (25 bp):
TGGCTCTCATGAGCTTCCCATTATT
Found at i:26192249 original size:50 final size:50
Alignment explanation
Indices: 26192186--26192309 Score: 196
Period size: 50 Copynumber: 2.5 Consensus size: 50
26192176 TCCTGATATA
* *
26192186 TGGCTCTCTTGAGCTTCCCATTATTTGGCTCTCACGAGCTTCCTT-ATAAT
1 TGGCTCTCATGAGCTTCCCATTATTTGGCTCTCACAAGCTT-CTTGATAAT
26192236 TGGCTCTCATGAGCTTCCCATTATTTGGCTCTCACAAGCTTCTTGATAAT
1 TGGCTCTCATGAGCTTCCCATTATTTGGCTCTCACAAGCTTCTTGATAAT
*
26192286 TGGCTCTCATAAGCTTCCCTATTA
1 TGGCTCTCATGAGCTTCCC-ATTA
26192310 ATGGATTTTC
Statistics
Matches: 69, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
49 3 0.04
50 62 0.90
51 4 0.06
ACGTcount: A:0.19, C:0.27, G:0.15, T:0.39
Consensus pattern (50 bp):
TGGCTCTCATGAGCTTCCCATTATTTGGCTCTCACAAGCTTCTTGATAAT
Found at i:26194821 original size:20 final size:20
Alignment explanation
Indices: 26194796--26194838 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
26194786 GGGAGCAGTT
* *
26194796 TTTCAATCGATTTAAAAATG
1 TTTCAATCGAGTTAAAAAAG
*
26194816 TTTCAATTGAGTTAAAAAAG
1 TTTCAATCGAGTTAAAAAAG
26194836 TTT
1 TTT
26194839 AAACTATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.07, G:0.12, T:0.42
Consensus pattern (20 bp):
TTTCAATCGAGTTAAAAAAG
Found at i:26201475 original size:72 final size:73
Alignment explanation
Indices: 26201396--26201542 Score: 287
Period size: 72 Copynumber: 2.0 Consensus size: 73
26201386 GTCGATTGGT
26201396 TTGGTTAATTTTTTGAAAGTATAAATTAATCGGTTGATTAATTTAGTTAATTTTTTTATATG-TT
1 TTGGTTAATTTTTTGAAAGTATAAATTAATCGGTTGATTAATTTAGTTAATTTTTTTATATGTTT
26201460 TATACTTG
66 TATACTTG
26201468 TTGGTTAATTTTTTGAAAGTATAAATTAATCGGTTGATTAATTTAGTTAATTTTTTTATATGTTT
1 TTGGTTAATTTTTTGAAAGTATAAATTAATCGGTTGATTAATTTAGTTAATTTTTTTATATGTTT
26201533 TATACTTG
66 TATACTTG
26201541 TT
1 TT
26201543 TTAACCAAAA
Statistics
Matches: 74, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
72 62 0.84
73 12 0.16
ACGTcount: A:0.29, C:0.03, G:0.14, T:0.55
Consensus pattern (73 bp):
TTGGTTAATTTTTTGAAAGTATAAATTAATCGGTTGATTAATTTAGTTAATTTTTTTATATGTTT
TATACTTG
Found at i:26202662 original size:13 final size:13
Alignment explanation
Indices: 26202640--26202671 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
26202630 GTGAACTTCA
*
26202640 TGTAGTAATATCC
1 TGTAGCAATATCC
26202653 TGTAGCAATATCC
1 TGTAGCAATATCC
26202666 TGTAGC
1 TGTAGC
26202672 TTAGGTCCGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (13 bp):
TGTAGCAATATCC
Found at i:26203952 original size:29 final size:31
Alignment explanation
Indices: 26203887--26203966 Score: 92
Period size: 31 Copynumber: 2.6 Consensus size: 31
26203877 ATCTCAAAAC
* *
26203887 TATACATGAACTATGGTTTAATGTGCAATTG
1 TATACATGAACTTTGATTTAATGTGCAATTG
* *
26203918 TATACATGAACTTTGATTTTA-G-GCAATTT
1 TATACATGAACTTTGATTTAATGTGCAATTG
*
26203947 TATACATGAAAATTTGATTT
1 TATACATG-AACTTTGATTT
26203967 GATCCAATTC
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
29 14 0.33
30 11 0.26
31 18 0.42
ACGTcount: A:0.34, C:0.09, G:0.15, T:0.42
Consensus pattern (31 bp):
TATACATGAACTTTGATTTAATGTGCAATTG
Found at i:26203975 original size:30 final size:29
Alignment explanation
Indices: 26203912--26203975 Score: 74
Period size: 30 Copynumber: 2.2 Consensus size: 29
26203902 GTTTAATGTG
* * *
26203912 CAATTGTATACATGAACTTTGATTTTAGG
1 CAATTGTATACATGAAATTTGATTTGAGC
* *
26203941 CAATTTTATACATGAAAATTTGATTTGATC
1 CAATTGTATACATG-AAATTTGATTTGAGC
26203971 CAATT
1 CAATT
26203976 CTTGTAAATT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 13 0.45
30 16 0.55
ACGTcount: A:0.34, C:0.11, G:0.12, T:0.42
Consensus pattern (29 bp):
CAATTGTATACATGAAATTTGATTTGAGC
Found at i:26204184 original size:29 final size:30
Alignment explanation
Indices: 26204112--26204197 Score: 93
Period size: 31 Copynumber: 2.9 Consensus size: 30
26204102 TAAGTAAAAT
* * * *
26204112 TTAAAGTTTCAAGTATACATTTGAACCTCAA
1 TTAAAGTTTCATGTATACAATTGCACC-GAA
* * *
26204143 TTAGAGTTTCATGTGTATAATTGCACCGAA
1 TTAAAGTTTCATGTATACAATTGCACCGAA
26204173 TTAAAG-TTCATGTATACAATTGCAC
1 TTAAAGTTTCATGTATACAATTGCAC
26204198 AATAAATCAA
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
29 17 0.38
30 7 0.16
31 21 0.47
ACGTcount: A:0.35, C:0.15, G:0.14, T:0.36
Consensus pattern (30 bp):
TTAAAGTTTCATGTATACAATTGCACCGAA
Found at i:26205766 original size:7 final size:7
Alignment explanation
Indices: 26205754--26205814 Score: 54
Period size: 7 Copynumber: 8.6 Consensus size: 7
26205744 AATCTGCATT
26205754 ATTTTAA
1 ATTTTAA
26205761 ATTTTAA
1 ATTTTAA
*
26205768 A-TTTAT
1 ATTTTAA
26205774 ATTATT-A
1 ATT-TTAA
* *
26205781 ATCTATATT
1 AT-TTTA-A
26205790 ATTTTAA
1 ATTTTAA
26205797 ATTTTAA
1 ATTTTAA
26205804 ATTTTAA
1 ATTTTAA
26205811 ATTT
1 ATTT
26205815 ATGTTATACC
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
6 5 0.12
7 30 0.70
8 6 0.14
9 2 0.05
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (7 bp):
ATTTTAA
Found at i:26205932 original size:17 final size:18
Alignment explanation
Indices: 26205910--26205946 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
26205900 TTTCCTCAAA
*
26205910 TCAAACCCTC-CATCCAT
1 TCAAACCCTCAAATCCAT
26205927 TCAAACCCTCAAATCCAT
1 TCAAACCCTCAAATCCAT
26205945 TC
1 TC
26205947 TTCTTCTTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.32, C:0.43, G:0.00, T:0.24
Consensus pattern (18 bp):
TCAAACCCTCAAATCCAT
Found at i:26205990 original size:37 final size:37
Alignment explanation
Indices: 26205940--26206025 Score: 156
Period size: 37 Copynumber: 2.3 Consensus size: 37
26205930 AACCCTCAAA
26205940 TCCATTCTTCTTCTTCAAAAA-TCTCTAAATTAAACCC
1 TCCATTCTTCTTCTTCAAAAATTC-CTAAATTAAACCC
26205977 TCCATTCTTCTTCTTCAAAAATTCCTAAATTAAACCC
1 TCCATTCTTCTTCTTCAAAAATTCCTAAATTAAACCC
26206014 TCCATTCTTCTT
1 TCCATTCTTCTT
26206026 TTTGTTCATT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
37 46 0.96
38 2 0.04
ACGTcount: A:0.29, C:0.30, G:0.00, T:0.41
Consensus pattern (37 bp):
TCCATTCTTCTTCTTCAAAAATTCCTAAATTAAACCC
Found at i:26207142 original size:29 final size:28
Alignment explanation
Indices: 26207090--26207144 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
26207080 AAAAATTCAG
*
26207090 AAAAACTATAAAAAAATTTGAAATATGT
1 AAAAACTATAAAAAAATTTAAAATATGT
* *
26207118 AAAAAGTATACAAAAATTTCAAAATAT
1 AAAAACTATAAAAAAATTT-AAAATAT
26207145 ATTAAATTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 17 0.74
29 6 0.26
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.27
Consensus pattern (28 bp):
AAAAACTATAAAAAAATTTAAAATATGT
Found at i:26208760 original size:27 final size:28
Alignment explanation
Indices: 26208725--26208784 Score: 95
Period size: 28 Copynumber: 2.2 Consensus size: 28
26208715 GAAGGTTCTA
*
26208725 GTTTAGCCTT-AAAAACTACGAGGAAAT
1 GTTTCGCCTTAAAAAACTACGAGGAAAT
*
26208752 GTTTCGCCTTAAAAAACTATGAGGAAAT
1 GTTTCGCCTTAAAAAACTACGAGGAAAT
26208780 GTTTC
1 GTTTC
26208785 ATCTAAGTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 9 0.30
28 21 0.70
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (28 bp):
GTTTCGCCTTAAAAAACTACGAGGAAAT
Found at i:26209082 original size:3 final size:3
Alignment explanation
Indices: 26209074--26209105 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
26209064 AGTTATATGA
26209074 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG AT
26209106 CTGTTACAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.31, T:0.34
Consensus pattern (3 bp):
ATG
Found at i:26216646 original size:50 final size:50
Alignment explanation
Indices: 26216575--26217122 Score: 257
Period size: 50 Copynumber: 11.0 Consensus size: 50
26216565 AGCAATGTCG
* * * * *
26216575 GGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTACACCGCTA
1 GGGAAGTGAGATTCACCGTTGTAGCTTTAATCTGTTCCACTGCACCGCTA
* * * ** ** *
26216625 GGGAGGTGAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATG-TCG
1 GGGAAGTGAGATTCACCGTTGTAGCTTTAATCTGTTCCACTGCACCGCT-A
* * *
26216675 GGGAAGTGAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCA
1 GGGAAGTGAGATTCACCGTTGTAGCTTTAATCTGTTCCACTGCACCGCTA
* * * * ** * ** *
26216725 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAATTGCAATG-TC
1 GGGAAGTGAGATTCACCGTTGTAGCTTTAATCTGTTCCACTGCACCGCTA
** * * * ** * * * *
26216774 GGGTAAGCAAAATTCACCGATGTGGCTTTAATCTGTTGTAATACACTGCCA
1 GGG-AAGTGAGATTCACCGTTGTAGCTTTAATCTGTTCCACTGCACCGCTA
* * * * ** ***
26216825 GGGAAGTAAGATTCGCCGTTGTGGCTTTAATCTTTTTAACTGCA-ATTTCA
1 GGGAAGTGAGATTCACCGTTGTAGCTTTAATCTGTTCCACTGCACCGCT-A
** * * *
26216875 GGGAAGCAAGATTCACCATTGTGGCTTTAATCTGTTCCACTGCACCGCCA
1 GGGAAGTGAGATTCACCGTTGTAGCTTTAATCTGTTCCACTGCACCGCTA
* * * * * ** **
26216925 GGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATG-TCA
1 GGGAAGTGAGATTCACCGTTGTAGCTTTAATCTGTTCCACTGCACCGCT-A
** * * *
26216975 GGGAAGCAAGGTTCACCGATGTGGCTTTAATCTGTTCCACTGCATCAC-CT-
1 GGGAAGTGAGATTCACCGTTGTAGCTTTAATCTGTTCCACTGCA-C-CGCTA
* ** * * ** **
26217025 GAGG-AGTAAGATTTGCTGTTGTAGCTTTAATCTTTTTAACTGCAATG-TCA
1 G-GGAAGTGAGATTCACCGTTGTAGCTTTAATCTGTTCCACTGCACCGCT-A
** * * *
26217075 GGGAAGCAAGGTTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGC
1 GGGAAGTGAGATTCACCGTTGTAGCTTTAATCTGTTCCACTGCACCGC
26217123 CAGGAAAATA
Statistics
Matches: 362, Mismatches: 120, Indels: 31
0.71 0.23 0.06
Matches are distributed among these distances:
48 1 0.00
49 6 0.02
50 349 0.96
51 5 0.01
52 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.32
Consensus pattern (50 bp):
GGGAAGTGAGATTCACCGTTGTAGCTTTAATCTGTTCCACTGCACCGCTA
Found at i:26217138 original size:100 final size:100
Alignment explanation
Indices: 26216549--26217137 Score: 779
Period size: 100 Copynumber: 5.9 Consensus size: 100
26216539 TAACTCGTAA
* * * * * * * * * *
26216549 CTTTAATCTATTGAACAGCAATGTCGGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * * * * * *
26216614 CTACACCGCTAGGGAGGTGAGATTCACCGTTGTGG
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
* **
26216649 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGTGAGATTCACCGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
26216714 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
66 CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
* * **
26216749 CTTTAATCTTTTTAATTGCAATGTC-GGGTAAGCAAAATTCACCGATGTGGCTTTAATCTGTTGT
1 CTTTAATCTTTTTAACTGCAATGTCAGGG-AAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
* * * * *
26216813 AATACACTGCCAGGGAAGTAAGATTCGCCGTTGTGG
65 ACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
*
26216849 CTTTAATCTTTTTAACTGCAATTTCAGGGAAGCAAGATTCACC-ATTGTGGCTTTAATCTGTTCC
1 CTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGA-TGTGGCTTTAATCTGTTCC
*
26216913 ACTGCACCGCCAGGGAAATAAGATTCGCTGTTGTAG
65 ACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
*
26216949 CTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGGTTCACCGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * * *
26217014 CTGCATCACCTGAGG-AGTAAGATTTGCTGTTGTAG
66 CTGCACCGCCAG-GGAAGTAAGATTCGCTGTTGTAG
*
26217049 CTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGGTTCACCGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* *
26217114 CTGCACCGCCAGGAAAATAAGATT
66 CTGCACCGCCAGGGAAGTAAGATT
26217138 TAATGCGATC
Statistics
Matches: 433, Mismatches: 50, Indels: 12
0.87 0.10 0.02
Matches are distributed among these distances:
99 5 0.01
100 422 0.97
101 6 0.01
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (100 bp):
CTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
CTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAG
Found at i:26218646 original size:14 final size:14
Alignment explanation
Indices: 26218627--26218675 Score: 55
Period size: 15 Copynumber: 3.5 Consensus size: 14
26218617 TTAGCCTCTC
26218627 CATTTTTACTTTTT
1 CATTTTTACTTTTT
*
26218641 CATTTTTCCATTTTT
1 CATTTTTAC-TTTTT
*
26218656 CATTTTCA-TTTTT
1 CATTTTTACTTTTT
*
26218669 TATTTTT
1 CATTTTT
26218676 TTTCTGACTC
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
13 10 0.34
14 8 0.28
15 11 0.38
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (14 bp):
CATTTTTACTTTTT
Found at i:26218669 original size:22 final size:22
Alignment explanation
Indices: 26218625--26218668 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
26218615 CTTTAGCCTC
*
26218625 TCCATTTTTACTTTTTCATTTT
1 TCCATTTTTACATTTTCATTTT
26218647 TCCATTTTT-CATTTTCATTTT
1 TCCATTTTTACATTTTCATTTT
26218668 T
1 T
26218669 TATTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.14, C:0.18, G:0.00, T:0.68
Consensus pattern (22 bp):
TCCATTTTTACATTTTCATTTT
Found at i:26218676 original size:7 final size:7
Alignment explanation
Indices: 26218627--26218675 Score: 57
Period size: 7 Copynumber: 7.0 Consensus size: 7
26218617 TTAGCCTCTC
26218627 CATTTTT
1 CATTTTT
26218634 -ACTTTTT
1 CA-TTTTT
26218641 CATTTTT
1 CATTTTT
26218648 CCATTTTT
1 -CATTTTT
26218656 CA-TTTT
1 CATTTTT
26218662 CATTTTT
1 CATTTTT
*
26218669 TATTTTT
1 CATTTTT
26218676 TTTCTGACTC
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
6 7 0.19
7 22 0.59
8 8 0.22
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (7 bp):
CATTTTT
Found at i:26237033 original size:44 final size:44
Alignment explanation
Indices: 26236912--26237269 Score: 164
Period size: 44 Copynumber: 8.0 Consensus size: 44
26236902 TAAATCTACC
*
26236912 ATAGCAAGTCTTATTTCCCTGAAGTTGCAGTGGAGCAGACTGAAG
1 ATAGCAAGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTGAAG
** * *
26236957 ATAGCAAACCTTATCTTCCTGAAGTTGCAGTGGAGCA-AGTTTAAG
1 ATAGCAAGTCTTATC-TCCTGAAGTTGCAGTGGAGCAGA-CTGAAG
* * * *
26237002 ATA-CAAGTCTTATCTCCTTGAAGTTGTAGTGGAACAGATTAAAG
1 ATAGCAAGTCTTATCTCC-TGAAGTTGCAGTGGAGCAGACTGAAG
* * * * *
26237046 CTATAAATACCAGATCTTATCTCTCTGAAGTTGTAGTAGAGCAGA-T---C
1 --AT--A-GCAAG-TCTTATCTC-CTGAAGTTGCAGTGGAGCAGACTGAAG
* * * * *
26237093 ATATCAA-ACTTTATCTTCTTGAAGTTGCAGTGGAGCAGAATGAGG
1 ATAGCAAGTC-TTATC-TCCTGAAGTTGCAGTGGAGCAGACTGAAG
* * * * * *
26237138 CTA-CAAATCTTATCTCCCTGAAGTGGTAGTGGAGCAAATTGAAG
1 ATAGCAAGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTGAAG
* * * *
26237182 ACA-CTAA-TCTTATCTCCCTGAAGATGCGGTGGAGCAGATTGAAG
1 ATAGC-AAGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTGAAG
* * * * *
26237226 ATA-CTAA-TCTTATCTCCCTAAAATTACAGTGGAGTAGATTGAAG
1 ATAGC-AAGTCTTATCT-CCTGAAGTTGCAGTGGAGCAGACTGAAG
26237270 CGACAAATTC
Statistics
Matches: 249, Mismatches: 43, Indels: 43
0.74 0.13 0.13
Matches are distributed among these distances:
40 1 0.00
41 23 0.09
42 5 0.02
43 5 0.02
44 132 0.53
45 47 0.19
46 3 0.01
48 1 0.00
50 4 0.02
51 27 0.11
52 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (44 bp):
ATAGCAAGTCTTATCTCCTGAAGTTGCAGTGGAGCAGACTGAAG
Found at i:26237257 original size:88 final size:88
Alignment explanation
Indices: 26237103--26237269 Score: 199
Period size: 88 Copynumber: 1.9 Consensus size: 88
26237093 ATATCAAACT
* * * * * * * **
26237103 TTATCTTCTTGAAGTTGCAGTGGAGCAGAATGAGGCTACAAATCTTATCTCCCTGAAGTGGTAGT
1 TTATCTCCCTGAAGATGCAGTGGAGCAGAATGAAGATACAAATCTTATCTCCCTAAAATGACAGT
26237168 GGAGCAAATTGAAGACACTAATC
66 GGAGCAAATTGAAGACACTAATC
* * * *
26237191 TTATCTCCCTGAAGATGCGGTGGAGCAGATTGAAGATACTAATCTTATCTCCCTAAAATTACAGT
1 TTATCTCCCTGAAGATGCAGTGGAGCAGAATGAAGATACAAATCTTATCTCCCTAAAATGACAGT
* *
26237256 GGAGTAGATTGAAG
66 GGAGCAAATTGAAG
26237270 CGACAAATTC
Statistics
Matches: 64, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
88 64 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (88 bp):
TTATCTCCCTGAAGATGCAGTGGAGCAGAATGAAGATACAAATCTTATCTCCCTAAAATGACAGT
GGAGCAAATTGAAGACACTAATC
Found at i:26240458 original size:31 final size:31
Alignment explanation
Indices: 26240418--26240632 Score: 199
Period size: 31 Copynumber: 7.0 Consensus size: 31
26240408 CTCTATAATA
* *
26240418 TATATTCATATACAAATCAATTTCAATAATG
1 TATAATCATATACAAATCAATTTCAACAATG
* *
26240449 TATAATCATATACAAATTAATTTCAGCAATG
1 TATAATCATATACAAATCAATTTCAACAATG
* * *
26240480 AATAATCATATACGAATCAA-TTCAACAGCT-
1 TATAATCATATACAAATCAATTTCAACA-ATG
* *
26240510 TAT-ATCCTTATACAAATCAATTTCAATAATG
1 TATAAT-CATATACAAATCAATTTCAACAATG
*
26240541 TATAATCATATACAAATTAATTTCAACAATG
1 TATAATCATATACAAATCAATTTCAACAATG
* * * *
26240572 AATAATCATATACGAATGAA-TTCAACAGCT-
1 TATAATCATATACAAATCAATTTCAACA-ATG
* * *
26240602 TAT-ATCCTTATACAAATCAAATTCAATAATG
1 TATAAT-CATATACAAATCAATTTCAACAATG
26240633 AGTAACTATA
Statistics
Matches: 148, Mismatches: 27, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
29 4 0.03
30 42 0.28
31 100 0.68
32 2 0.01
ACGTcount: A:0.46, C:0.15, G:0.05, T:0.34
Consensus pattern (31 bp):
TATAATCATATACAAATCAATTTCAACAATG
Found at i:26240686 original size:92 final size:92
Alignment explanation
Indices: 26240426--26240676 Score: 409
Period size: 92 Copynumber: 2.7 Consensus size: 92
26240416 TATATATTCA
26240426 TATACAAATCAATTTCAATAATGTATAATCATATACAAATTAATTTCAGCAATGAATAATCATAT
1 TATACAAATCAATTTCAATAATGTATAATCATATACAAATTAATTTCAGCAATGAATAATCATAT
26240491 ACGAATCAATTCAACAGCTTATATCCT
66 ACGAATCAATTCAACAGCTTATATCCT
*
26240518 TATACAAATCAATTTCAATAATGTATAATCATATACAAATTAATTTCAACAATGAATAATCATAT
1 TATACAAATCAATTTCAATAATGTATAATCATATACAAATTAATTTCAGCAATGAATAATCATAT
*
26240583 ACGAATGAATTCAACAGCTTATATCCT
66 ACGAATCAATTCAACAGCTTATATCCT
* * *
26240610 TATACAAATCAAATTCAATAATG-AGTAA-CTATAAATAAATTAATTTCAGCAATGAAT-ATCGA
1 TATACAAATCAATTTCAATAATGTA-TAATC-ATATACAAATTAATTTCAGCAATGAATAATC-A
26240672 TATAC
63 TATAC
26240677 CCAACAATTC
Statistics
Matches: 150, Mismatches: 6, Indels: 6
0.93 0.04 0.04
Matches are distributed among these distances:
91 5 0.03
92 145 0.97
ACGTcount: A:0.46, C:0.15, G:0.06, T:0.33
Consensus pattern (92 bp):
TATACAAATCAATTTCAATAATGTATAATCATATACAAATTAATTTCAGCAATGAATAATCATAT
ACGAATCAATTCAACAGCTTATATCCT
Found at i:26247291 original size:46 final size:45
Alignment explanation
Indices: 26247241--26247399 Score: 131
Period size: 46 Copynumber: 3.4 Consensus size: 45
26247231 TATTAAAAAA
* *
26247241 ATTTTAAAAATATCTCAAGGCATATTTGAAAGCATCTTTGAGAGAG
1 ATTTTAAAAACATCTCAAGG-ATATTTGAAAGCATCCTTGAGAGAG
* * * * *
26247287 ATTTTGAAAATATTTCAAGGGAGATATGAAAGTC-TCCTTGAGAGAG
1 ATTTTAAAAACATCTCAA-GGATATTTGAAAG-CATCCTTGAGAGAG
* * * ** *
26247333 GTTTTGAGAACATCTCAAGGATGATTTGGGAGCACCCTTGAGAGAGG
1 ATTTTAAAAACATCTCAAGGAT-ATTTGAAAGCATCCTTGAGAGA-G
* *
26247380 GTTTTAAAAACATTTCAAGG
1 ATTTTAAAAACATCTCAAGG
26247400 TAGATCTGAT
Statistics
Matches: 91, Mismatches: 17, Indels: 9
0.78 0.15 0.08
Matches are distributed among these distances:
45 4 0.04
46 66 0.73
47 21 0.23
ACGTcount: A:0.35, C:0.11, G:0.23, T:0.30
Consensus pattern (45 bp):
ATTTTAAAAACATCTCAAGGATATTTGAAAGCATCCTTGAGAGAG
Found at i:26249730 original size:5 final size:5
Alignment explanation
Indices: 26249720--26249753 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
26249710 AATTGATTGT
26249720 ATATC ATATC ATATC ATATC ATATC ATATC ATAT
1 ATATC ATATC ATATC ATATC ATATC ATATC ATAT
26249754 GTATGTCTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATC
Found at i:26250604 original size:65 final size:65
Alignment explanation
Indices: 26250532--26250661 Score: 260
Period size: 65 Copynumber: 2.0 Consensus size: 65
26250522 TTAAATTAAA
26250532 AAAAATATTTCTTTTGTTTATTTAATATGAATTCGGGCTGAGTCAAAGTGTAAAAGATATTTTTG
1 AAAAATATTTCTTTTGTTTATTTAATATGAATTCGGGCTGAGTCAAAGTGTAAAAGATATTTTTG
26250597 AAAAATATTTCTTTTGTTTATTTAATATGAATTCGGGCTGAGTCAAAGTGTAAAAGATATTTTTG
1 AAAAATATTTCTTTTGTTTATTTAATATGAATTCGGGCTGAGTCAAAGTGTAAAAGATATTTTTG
26250662 TTATACAGAA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.34, C:0.06, G:0.17, T:0.43
Consensus pattern (65 bp):
AAAAATATTTCTTTTGTTTATTTAATATGAATTCGGGCTGAGTCAAAGTGTAAAAGATATTTTTG
Found at i:26257355 original size:28 final size:26
Alignment explanation
Indices: 26257309--26257360 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 26
26257299 ATTATAATGA
* *
26257309 AAAATTGACATGTAGTAAAGTATATT
1 AAAAGTGACATGTAGTAAAATATATT
26257335 AAAAGTGACATGTCATGTAAAATATA
1 AAAAGTGACATGT-A-GTAAAATATA
26257361 AAATATAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 12 0.55
27 1 0.05
28 9 0.41
ACGTcount: A:0.48, C:0.06, G:0.15, T:0.31
Consensus pattern (26 bp):
AAAAGTGACATGTAGTAAAATATATT
Found at i:26264484 original size:24 final size:24
Alignment explanation
Indices: 26264457--26264515 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
26264447 CCCTAAACAC
* **
26264457 AAAAATCCTAAAATTAAAAATATT
1 AAAAACCCTAAAACAAAAAATATT
*
26264481 -AAAACCCTTAAACCAAAAAATATT
1 AAAAACCC-TAAAACAAAAAATATT
26264505 AAAAACCCTAA
1 AAAAACCCTAA
26264516 CCCTGGGAGA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 6 0.21
24 16 0.55
25 7 0.24
ACGTcount: A:0.61, C:0.17, G:0.00, T:0.22
Consensus pattern (24 bp):
AAAAACCCTAAAACAAAAAATATT
Found at i:26266599 original size:48 final size:48
Alignment explanation
Indices: 26266545--26266637 Score: 123
Period size: 48 Copynumber: 1.9 Consensus size: 48
26266535 GCAGGGTCAC
* * * * *
26266545 TTATTACCTCCCGTAAGTCTCTCTCATGCATCTAGGAGTAGGGAAACT
1 TTATTACCTACCGTAAGCCTCCCCCATGCATCAAGGAGTAGGGAAACT
* *
26266593 TTATTACTTACTGTAAGCCTCCCCCATGCATCAAGGAGTAGGGAA
1 TTATTACCTACCGTAAGCCTCCCCCATGCATCAAGGAGTAGGGAA
26266638 TCCAAGCCCC
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
48 38 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (48 bp):
TTATTACCTACCGTAAGCCTCCCCCATGCATCAAGGAGTAGGGAAACT
Found at i:26269917 original size:10 final size:10
Alignment explanation
Indices: 26269902--26269930 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
26269892 GAAATGTTTG
26269902 ATGATATAAT
1 ATGATATAAT
26269912 ATGATATAAT
1 ATGATATAAT
26269922 A-GATATAAT
1 ATGATATAAT
26269931 TTTTTATTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 8 0.42
10 11 0.58
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.38
Consensus pattern (10 bp):
ATGATATAAT
Found at i:26270197 original size:37 final size:37
Alignment explanation
Indices: 26270151--26270265 Score: 153
Period size: 37 Copynumber: 3.1 Consensus size: 37
26270141 TGTTTTTGGT
26270151 TGGACTAGCTTTTCGAAGCAATTGGCGTGTTATCGGG
1 TGGACTAGCTTTTCGAAGCAATTGGCGTGTTATCGGG
* * * * *
26270188 TGGATTAGCTCTTAT-G-AGCATTTGGTGTGTTTTCGGT
1 TGGACTAGCT-TT-TCGAAGCAATTGGCGTGTTATCGGG
26270225 TGGACTAGCTTTTCGAAGCAATTGGCGTGTTATCGGG
1 TGGACTAGCTTTTCGAAGCAATTGGCGTGTTATCGGG
26270262 TGGA
1 TGGA
26270266 TGAGCTCTTA
Statistics
Matches: 64, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
35 1 0.02
36 3 0.05
37 56 0.88
38 3 0.05
39 1 0.02
ACGTcount: A:0.17, C:0.14, G:0.32, T:0.37
Consensus pattern (37 bp):
TGGACTAGCTTTTCGAAGCAATTGGCGTGTTATCGGG
Found at i:26270261 original size:74 final size:74
Alignment explanation
Indices: 26270140--26270296 Score: 296
Period size: 74 Copynumber: 2.1 Consensus size: 74
26270130 CTGTTTTGAC
* *
26270140 GTGTTTTTGGTTGGACTAGCTTTTCGAAGCAATTGGCGTGTTATCGGGTGGATTAGCTCTTATGA
1 GTGTTTTCGGTTGGACTAGCTTTTCGAAGCAATTGGCGTGTTATCGGGTGGATGAGCTCTTATGA
26270205 GCATTTGGT
66 GCATTTGGT
26270214 GTGTTTTCGGTTGGACTAGCTTTTCGAAGCAATTGGCGTGTTATCGGGTGGATGAGCTCTTATGA
1 GTGTTTTCGGTTGGACTAGCTTTTCGAAGCAATTGGCGTGTTATCGGGTGGATGAGCTCTTATGA
26270279 GCATTTGGT
66 GCATTTGGT
26270288 GTGTTTTCG
1 GTGTTTTCG
26270297 AATGGATTAC
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
74 81 1.00
ACGTcount: A:0.15, C:0.13, G:0.32, T:0.40
Consensus pattern (74 bp):
GTGTTTTCGGTTGGACTAGCTTTTCGAAGCAATTGGCGTGTTATCGGGTGGATGAGCTCTTATGA
GCATTTGGT
Found at i:26270303 original size:37 final size:36
Alignment explanation
Indices: 26270167--26270303 Score: 125
Period size: 37 Copynumber: 3.7 Consensus size: 36
26270157 AGCTTTTCGA
* * * *
26270167 AGCAATTGGCGTGTTATCGGGTGGATTAGCTCTTATG
1 AGCATTTGGTGTGTTTTCGGATGGA-TAGCTCTTATG
*
26270204 AGCATTTGGTGTGTTTTCGGTTGGACTAGCT-TT-TCG
1 AGCATTTGGTGTGTTTTCGGATGGA-TAGCTCTTAT-G
* * * *
26270240 AAGCAATTGGCGTGTTATCGGGTGGATGAGCTCTTATG
1 -AGCATTTGGTGTGTTTTCGGATGGAT-AGCTCTTATG
*
26270278 AGCATTTGGTGTGTTTTCGAATGGAT
1 AGCATTTGGTGTGTTTTCGGATGGAT
26270304 TACTGTACTC
Statistics
Matches: 81, Mismatches: 14, Indels: 10
0.77 0.13 0.10
Matches are distributed among these distances:
35 1 0.01
36 4 0.05
37 72 0.89
38 3 0.04
39 1 0.01
ACGTcount: A:0.18, C:0.12, G:0.32, T:0.38
Consensus pattern (36 bp):
AGCATTTGGTGTGTTTTCGGATGGATAGCTCTTATG
Done.