Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 79 of 145
Found at i:26271514 original size:21 final size:20
Alignment explanation
Indices: 26271474--26271515 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
26271464 GTCTCGAATT
*
26271474 GCCTCAAAGCTATTTTTAGG
1 GCCTCAAAGCTATATTTAGG
*
26271494 GCCTCAAAGGCTCTATTTAGG
1 GCCTCAAA-GCTATATTTAGG
26271515 G
1 G
26271516 ACGATATACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (20 bp):
GCCTCAAAGCTATATTTAGG
Found at i:26274148 original size:13 final size:13
Alignment explanation
Indices: 26274130--26274164 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
26274120 CGTGGCAAAT
*
26274130 TTGGAGGATTTGC
1 TTGGAGGACTTGC
26274143 TTGGAGGACTTGC
1 TTGGAGGACTTGC
*
26274156 TCGGAGGAC
1 TTGGAGGAC
26274165 ATGTCACATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.17, C:0.14, G:0.40, T:0.29
Consensus pattern (13 bp):
TTGGAGGACTTGC
Found at i:26278459 original size:186 final size:185
Alignment explanation
Indices: 26278137--26278742 Score: 884
Period size: 186 Copynumber: 3.3 Consensus size: 185
26278127 TTTACCAAAA
* * **
26278137 TTTTTTCTCTCATTTTCTCTCTTGCCAAACACCACTTTT-TTCTTCAAAATACATGGCCGGCTCA
1 TTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTGGCTCA
*
26278201 TTTCATCTACAATAATTTCCATTACCATGATTATAATCATGCTTTTGTGTAATTTCTGTAAATCC
66 TTTCATCTACAATAATTTCCATTACCATGATTATAATCATGCTTTTGTGTAATTTTTGTAAA-CC
* *
26278266 GCACCACACTTTCAGCTTAAAATCATTGTTTTTTTCCCTCCACTGTCGGTTGCCAT
130 ACACCACACTTTCAGCTTAAAATCATTGTTTTTTTCCCTCCACTGTCGGCTGCCAT
* * *
26278322 TTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTTAAAACATATGTTTGGCTCA
1 TTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTGGCTCA
*
26278387 TTTCATCTACAAGAATTTCCATTACCATGATTATAATCATGCTTTTGTGTAATTTTTGTAAACGC
66 TTTCATCTACAATAATTTCCATTACCATGATTATAATCATGCTTTTGTGTAATTTTTGTAAAC-C
* *
26278452 ACACCACACCTTCAGCTTAAAATCATTGTTTTTTTCCCTCCACTATCGGCTGCCAT
130 ACACCACACTTTCAGCTTAAAATCATTGTTTTTTTCCCTCCACTGTCGGCTGCCAT
* * *
26278508 TTTTTCTCTTTTATTTTCTCTCTTGCCAAACACC-TTTTTCTTCTTCAAAACACATGGTTGGCGC
1 TTTTT-TCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTGGCTC
** * *
26278572 ATTTCATCTACAATAATTTCCACCACCATGATTATAATCATGCTTTTATGCAATTTTTGTAAACC
65 ATTTCATCTACAATAATTTCCATTACCATGATTATAATCATGCTTTTGTGTAATTTTTGTAAA-C
* * * * *
26278637 CACACCACACTTTCAACTTAAAACCA---TTTTTTCCCCT-CGCTGTCAGCTGCCA-
129 CACACCACACTTTCAGCTTAAAATCATTGTTTTTTTCCCTCCACTGTCGGCTGCCAT
* *
26278689 TTTTTTCTCTCATTTTCTCTCTTTCCAAACACTATTTTTCTTCTTCAAAACACA
1 TTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACA
26278743 ACATCTAGTT
Statistics
Matches: 381, Mismatches: 35, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
180 24 0.06
181 25 0.07
182 12 0.03
183 10 0.03
185 39 0.10
186 244 0.64
187 27 0.07
ACGTcount: A:0.24, C:0.26, G:0.08, T:0.42
Consensus pattern (185 bp):
TTTTTTCTCTCATTTTCTCTCTTGCCAAACACCATTTTTCTTCTTCAAAACACATGGTTGGCTCA
TTTCATCTACAATAATTTCCATTACCATGATTATAATCATGCTTTTGTGTAATTTTTGTAAACCA
CACCACACTTTCAGCTTAAAATCATTGTTTTTTTCCCTCCACTGTCGGCTGCCAT
Found at i:26278560 original size:20 final size:22
Alignment explanation
Indices: 26278521--26278560 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
26278511 TTCTCTTTTA
*
26278521 TTTTCTCTCTTGCCAAACACCT
1 TTTTCTCTCTTGCAAAACACCT
26278543 TTTTCT-TCTT-CAAAACAC
1 TTTTCTCTCTTGCAAAACAC
26278561 ATGGTTGGCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 4 0.24
22 6 0.35
ACGTcount: A:0.23, C:0.33, G:0.03, T:0.42
Consensus pattern (22 bp):
TTTTCTCTCTTGCAAAACACCT
Found at i:26279085 original size:14 final size:15
Alignment explanation
Indices: 26279058--26279086 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26279048 ACAGTTAGAG
26279058 GGGAAGAGAGAAAGA
1 GGGAAGAGAGAAAGA
26279073 GGGAAGA-AGAAAGA
1 GGGAAGAGAGAAAGA
26279087 AAATGGAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.55, C:0.00, G:0.45, T:0.00
Consensus pattern (15 bp):
GGGAAGAGAGAAAGA
Found at i:26282735 original size:61 final size:58
Alignment explanation
Indices: 26282646--26282778 Score: 169
Period size: 61 Copynumber: 2.2 Consensus size: 58
26282636 TCTCAGAATA
* *
26282646 ATATTATTTTAATAGAATTAATATTAAATTAAAT-TAAATATTTATTTTATAGATAAATATT
1 ATATTAATTTAATAGAATTAATATTAAATTAAATCT-AATATTTA--TCAT-GATAAATATT
* * * *
26282707 CTATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTATCATGATAATTATT
1 ATATTAATTTAATAGAATTAATATTAAATTAAATCTAATATTTATCATGATAAATATT
26282765 ATATTAATTTAATA
1 ATATTAATTTAATA
26282779 TTAAAGGGCT
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
58 22 0.34
59 3 0.05
61 38 0.59
62 1 0.02
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (58 bp):
ATATTAATTTAATAGAATTAATATTAAATTAAATCTAATATTTATCATGATAAATATT
Found at i:26288311 original size:58 final size:60
Alignment explanation
Indices: 26288196--26288311 Score: 164
Period size: 61 Copynumber: 1.9 Consensus size: 60
26288186 TGTGATTACC
* *
26288196 TTAATATTAAATTAAATTTAATAGTTATCTTGTAGATAAGTATTATATTAATTTAATAGAT
1 TTAATATTAAATTAAATCTAATAGTTATC-TATAGATAAGTATTATATTAATTTAATAGAT
* * *
26288257 TTAATATTAAATTTAATCTAATATTTATC-AT-GATAATTATTATATTAATTTAATA
1 TTAATATTAAATTAAATCTAATAGTTATCTATAGATAAGTATTATATTAATTTAATA
26288312 TTAAAGGGCT
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
58 23 0.46
59 1 0.02
61 26 0.52
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (60 bp):
TTAATATTAAATTAAATCTAATAGTTATCTATAGATAAGTATTATATTAATTTAATAGAT
Found at i:26291014 original size:53 final size:51
Alignment explanation
Indices: 26290947--26291096 Score: 162
Period size: 50 Copynumber: 2.9 Consensus size: 51
26290937 TGCACTAAAG
* *
26290947 GACCATATCATGTAAGATCGTAACTGGGGGGTTATGACATTATATGGAAAGAA
1 GACCATATCATGTAAGATCGTAACTGGTGGGTTAT-ACATCATATGGAAA-AA
* *
26291000 GACCATATTC-TGTAAGACCATAACTGGTGGGTTATATCATCATAT--AAAAA
1 GACCATA-TCATGTAAGATCGTAACTGGTGGGTTATA-CATCATATGGAAAAA
* * * *
26291050 AACCATATCGTGTAAGATTGTAACTGGTGGGTTTTAACATCATATGG
1 GACCATATCATGTAAGATCGTAACTGGTGGGTTAT-ACATCATATGG
26291097 GGAAGTTTGA
Statistics
Matches: 82, Mismatches: 9, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
49 2 0.02
50 37 0.45
51 4 0.05
52 1 0.01
53 36 0.44
54 2 0.02
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.30
Consensus pattern (51 bp):
GACCATATCATGTAAGATCGTAACTGGTGGGTTATACATCATATGGAAAAA
Found at i:26291315 original size:60 final size:60
Alignment explanation
Indices: 26291222--26291558 Score: 354
Period size: 60 Copynumber: 5.6 Consensus size: 60
26291212 AAAGGACAGT
* * *
26291222 CTTTGTGGCAAAACTCTGGACA-AGAAAGCCTTTGTGGAAAGTATTGAATGTAAAGGATGC
1 CTTTGTGGCAAAACTCTAGACAGA-AAAGCCTTTGTGGCAAGTACTGAATGTAAAGGATGC
* * * * **
26291282 ATTTGTGGCAAAACTCTACATAGAAAAGTCTTTGTGGTGAGTGA-TGAATGTAAAGGATGC
1 CTTTGTGGCAAAACTCTAGACAGAAAAGCCTTTGTGGCAAGT-ACTGAATGTAAAGGATGC
* * * * * *
26291342 CTTTGTGGAAAAAATCTTGATAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAATGATGC
1 CTTTGTGGCAAAACTCTAGACAGAAAAGCCTTTGTGGCAAGTACTGAATGTAAAGGATGC
* * ** *
26291402 CTTCGTGGCAAAACTCTGGACAGAAAAGCCTTTGTGGCAAGTGTTGAATGTAAATGATGC
1 CTTTGTGGCAAAACTCTAGACAGAAAAGCCTTTGTGGCAAGTACTGAATGTAAAGGATGC
* * * ** * *
26291462 CTTTGTAGCCAAACTCTAGACAGAAAAGCCTTTTTGGTGAGTACTAAATGTAAAAGATGC
1 CTTTGTGGCAAAACTCTAGACAGAAAAGCCTTTGTGGCAAGTACTGAATGTAAAGGATGC
* * * **
26291522 TTTTGTGGCAAACCTCTAGAAAGTTAAGCCTTTGTGG
1 CTTTGTGGCAAAACTCTAGACAGAAAAGCCTTTGTGG
26291559 AAACCTTTGT
Statistics
Matches: 230, Mismatches: 44, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
59 1 0.00
60 227 0.99
61 2 0.01
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (60 bp):
CTTTGTGGCAAAACTCTAGACAGAAAAGCCTTTGTGGCAAGTACTGAATGTAAAGGATGC
Found at i:26291466 original size:31 final size:31
Alignment explanation
Indices: 26291369--26291467 Score: 84
Period size: 31 Copynumber: 3.3 Consensus size: 31
26291359 TGATAGGAAA
*
26291369 GCCTTTGTGGCAAGTACTGAATGTAAATGAT
1 GCCTTTGTGGCAAGTATTGAATGTAAATGAT
* *
26291400 GCCTTCGTGGCAA-AACTCTGGACA-G-AAA--A-
1 GCCTTTGTGGCAAGTA-T-T-GA-ATGTAAATGAT
*
26291429 GCCTTTGTGGCAAGTGTTGAATGTAAATGAT
1 GCCTTTGTGGCAAGTATTGAATGTAAATGAT
26291460 GCCTTTGT
1 GCCTTTGT
26291468 AGCCAAACTC
Statistics
Matches: 52, Mismatches: 6, Indels: 20
0.67 0.08 0.26
Matches are distributed among these distances:
26 1 0.02
27 3 0.06
28 4 0.08
29 13 0.25
30 3 0.06
31 20 0.38
32 4 0.08
33 3 0.06
34 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.30
Consensus pattern (31 bp):
GCCTTTGTGGCAAGTATTGAATGTAAATGAT
Found at i:26291553 original size:180 final size:180
Alignment explanation
Indices: 26291226--26291558 Score: 454
Period size: 180 Copynumber: 1.9 Consensus size: 180
26291216 GACAGTCTTT
*
26291226 GTGGCAAAACTCTGGACAAGAAAGCCTTTGTGGAAAGTATTGAATGTAAAGGATGCATTTGTGGC
1 GTGGCAAAACTCTGGACAAGAAAGCCTTTGTGGAAAGTATTGAATGTAAAGGATGCATTTGTAGC
* * * *
26291291 AAAACTCTACATAGAAAAGTCTTTGTGGTGAGTGATGAATGTAAAGGATGCCTTTGTGGAAAAAA
66 AAAACTCTACACAGAAAAGCCTTTGTGGTGAGTGATAAATGTAAAAGATGCCTTTGTGGAAAAAA
* *
26291356 TCTTGATAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAATGATGCCTTC
131 TCTAGAAAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAATGATGCCTTC
* * * *
26291406 GTGGCAAAACTCTGGAC-AGAAAAGCCTTTGTGGCAAGTGTTGAATGTAAATGATGCCTTTGTAG
1 GTGGCAAAACTCTGGACAAG-AAAGCCTTTGTGGAAAGTATTGAATGTAAAGGATGCATTTGTAG
* * * * *
26291470 CCAAACTCTAGACAGAAAAGCCTTTTTGGTGAGT-ACTAAATGTAAAAGATGCTTTTGTGGCAAA
65 CAAAACTCTACACAGAAAAGCCTTTGTGGTGAGTGA-TAAATGTAAAAGATGCCTTTGTGGAAAA
** **
26291534 CCTCTAGAAAGTTAAGCCTTTGTGG
129 AATCTAGAAAGGAAAGCCTTTGTGG
26291559 AAACCTTTGT
Statistics
Matches: 131, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
179 3 0.02
180 128 0.98
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.29
Consensus pattern (180 bp):
GTGGCAAAACTCTGGACAAGAAAGCCTTTGTGGAAAGTATTGAATGTAAAGGATGCATTTGTAGC
AAAACTCTACACAGAAAAGCCTTTGTGGTGAGTGATAAATGTAAAAGATGCCTTTGTGGAAAAAA
TCTAGAAAGGAAAGCCTTTGTGGCAAGTACTGAATGTAAATGATGCCTTC
Found at i:26293599 original size:147 final size:146
Alignment explanation
Indices: 26293270--26293658 Score: 399
Period size: 146 Copynumber: 2.7 Consensus size: 146
26293260 ATGAAATTTT
* * * * * * * * * *
26293270 CATT-AGATTCCACAATCCGGTATTGCTAGGTGCAGACCATGATGTGCGAAGCTCCGGGCCTTAG
1 CATTAAGATACCACCATACGGTATTGCTGGGTACAAACCATAATATGTGAAGCTCTGGGCCTTAG
* * ** * ** * *
26293334 GAGGGGTCATTGCGGTGTTTGAGCATCAATATTAGAAATGACGAATGGAGGTATGGGCAGATGAA
66 GAGGGGACATTGCGGTGTTCGAGCATCAAGGTTAGAAATGACAAACAGAGGTATGAGCAAATGAA
*
26293399 TAGGGACATGAAATTC
131 TAGGGACATGAAATGC
*
26293415 CATTAAGATACCACCATACGGTATTGCTGGGTGCAAACCATAATATGTGAAGCTCTGGGCCTTAG
1 CATTAAGATACCACCATACGGTATTGCTGGGTACAAACCATAATATGTGAAGCTCTGGGCCTTAG
* * * *
26293480 GGGGGGACATTGCGATGTTCGAGTATCAAGGTTAGAAATGGCAAAACAGAGGTATGAGCAAATGA
66 GAGGGGACATTGCGGTGTTCGAGCATCAAGGTTAGAAATGAC-AAACAGAGGTATGAGCAAATGA
*
26293545 ATAGGGACATGGAATGC
130 ATAGGGACATGAAATGC
** * * ** * * *
26293562 CATTAAGATACTGCCATACGGTATTGTTTGGTACAAACTGTGATGTGTGAAGCT-TCGGGCATT-
1 CATTAAGATACCACCATACGGTATTGCTGGGTACAAACCATAATATGTGAAGCTCT-GGGCCTTA
* *
26293625 -GTGGGGACATTACGGTGTTCGAGCATCAAGGTTA
65 GGAGGGGACATTGCGGTGTTCGAGCATCAAGGTTA
26293659 AATGTGAAAT
Statistics
Matches: 203, Mismatches: 38, Indels: 6
0.82 0.15 0.02
Matches are distributed among these distances:
145 34 0.17
146 86 0.42
147 83 0.41
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.25
Consensus pattern (146 bp):
CATTAAGATACCACCATACGGTATTGCTGGGTACAAACCATAATATGTGAAGCTCTGGGCCTTAG
GAGGGGACATTGCGGTGTTCGAGCATCAAGGTTAGAAATGACAAACAGAGGTATGAGCAAATGAA
TAGGGACATGAAATGC
Found at i:26293891 original size:27 final size:28
Alignment explanation
Indices: 26293852--26293929 Score: 72
Period size: 27 Copynumber: 2.9 Consensus size: 28
26293842 AAACTAATAG
**
26293852 AGTCCACTGGGACAGTAAACATGGGG-T
1 AGTCCACCAGGACAGTAAACATGGGGAT
26293879 AGTCCACCAGGACA-TAAA-ATGTGGGAT
1 AGTCCACCAGGACAGTAAACATG-GGGAT
** * *
26293906 AGTCTTCCAGGATAGTGAACATGG
1 AGTCCACCAGGACAGTAAACATGG
26293930 AGAATAATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
25 3 0.07
26 7 0.17
27 24 0.59
28 4 0.10
29 3 0.07
ACGTcount: A:0.32, C:0.18, G:0.29, T:0.21
Consensus pattern (28 bp):
AGTCCACCAGGACAGTAAACATGGGGAT
Found at i:26297867 original size:3 final size:3
Alignment explanation
Indices: 26297859--26297907 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
26297849 AACTATTTCC
26297859 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26297907 T
1 T
26297908 TACATAGTCT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:26298485 original size:2 final size:2
Alignment explanation
Indices: 26298480--26298512 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
26298470 AAGAAAAAAC
26298480 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
26298513 CAGAAAATGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26310184 original size:15 final size:16
Alignment explanation
Indices: 26310150--26310195 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 16
26310140 GTTTAATGGA
26310150 AAAATTATAAATAAATC
1 AAAATTA-AAATAAATC
*
26310167 AAAATTAAACTAAA-C
1 AAAATTAAAATAAATC
*
26310182 -AAATTAAAACAAAT
1 AAAATTAAAATAAAT
26310196 TAGACTTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 11 0.44
15 1 0.04
16 6 0.24
17 7 0.28
ACGTcount: A:0.67, C:0.09, G:0.00, T:0.24
Consensus pattern (16 bp):
AAAATTAAAATAAATC
Found at i:26311183 original size:37 final size:37
Alignment explanation
Indices: 26311141--26311212 Score: 99
Period size: 37 Copynumber: 1.9 Consensus size: 37
26311131 GATGTATAGC
* *
26311141 TCTTCGGAGCATTTGGCATGTTATCAATTGGATTAGG
1 TCTTCGGAGCATTTGACATGCTATCAATTGGATTAGG
* * *
26311178 TCTTCGGGGCATTTGACGTGCTATCGATTGGATTA
1 TCTTCGGAGCATTTGACATGCTATCAATTGGATTA
26311213 ACTATTATGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 30 1.00
ACGTcount: A:0.19, C:0.15, G:0.28, T:0.38
Consensus pattern (37 bp):
TCTTCGGAGCATTTGACATGCTATCAATTGGATTAGG
Found at i:26313046 original size:21 final size:22
Alignment explanation
Indices: 26313000--26313048 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
26312990 ACAATACCGG
26313000 TATCGCGATACCAAGGAAGAGGA
1 TATCGCGATACCAA-GAAGAGGA
* *
26313023 TATCGCGATACCCA-AAGTGGA
1 TATCGCGATACCAAGAAGAGGA
26313044 TATCG
1 TATCG
26313049 TGATGCAACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 11 0.46
23 13 0.54
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (22 bp):
TATCGCGATACCAAGAAGAGGA
Found at i:26332627 original size:49 final size:49
Alignment explanation
Indices: 26332566--26332791 Score: 170
Period size: 50 Copynumber: 4.6 Consensus size: 49
26332556 TATGTCCTAA
* * *
26332566 ACATAGTCTTACATGGGATGTTTTC-TATACTG-CCAATGCCATATCCCAG
1 ACATGGTCTTACATGGGA-GTTCTCATAT-CGGCCCAATGCCATATCCCAG
* * *
26332615 ATATGGTCTTACATGGGAGTTCTCATATCGGCTCCCATGCCATGTCCCAG
1 ACATGGTCTTACATGGGAGTTCTCATATCGGC-CCAATGCCATATCCCAG
** ** * * *
26332665 ACATGGTCTTACGGGGGACCTCTCATCTCGATG-CCAACGCCATGTCCCAG
1 ACATGGTCTTACATGGGAGTTCTCATATCG--GCCCAATGCCATATCCCAG
* ** * * ** *
26332715 ACATGGTCTTACATGAGACCTCTCATCTCGGTGCCAACACCATGTCCCAG
1 ACATGGTCTTACATGGGAGTTCTCATATCGG-CCCAATGCCATATCCCAG
**
26332765 ACATGGTCTTACATGGGACCTCTCATA
1 ACATGGTCTTACATGGGAGTTCTCATA
26332792 ATATCAATGA
Statistics
Matches: 150, Mismatches: 20, Indels: 13
0.82 0.11 0.07
Matches are distributed among these distances:
48 8 0.05
49 19 0.13
50 122 0.81
52 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (49 bp):
ACATGGTCTTACATGGGAGTTCTCATATCGGCCCAATGCCATATCCCAG
Found at i:26332664 original size:50 final size:50
Alignment explanation
Indices: 26332596--26332838 Score: 254
Period size: 50 Copynumber: 4.7 Consensus size: 50
26332586 TTTTCTATAC
* * * **
26332596 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * ** * *
26332646 CT-CCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGA
1 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
26332696 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
26332746 TGCCAACACCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATATCAATGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATATC---GG
* * *
26332802 TGCCAATGTCATGTCCCAAACATGGTCTTACATGGGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
26332839 TCTCATCCCC
Statistics
Matches: 162, Mismatches: 23, Indels: 9
0.84 0.12 0.05
Matches are distributed among these distances:
49 1 0.01
50 122 0.75
51 1 0.01
53 4 0.02
56 34 0.21
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:26344877 original size:28 final size:28
Alignment explanation
Indices: 26344821--26344877 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 28
26344811 GTTAAGGGTG
* * *
26344821 TTACATCGTGTTTACTGTCCCGACGGAC
1 TTACATCGTCTTTACTGTCCCAACAGAC
* *
26344849 TTACCTCGTCTTTATTGTCCCAACAGAC
1 TTACATCGTCTTTACTGTCCCAACAGAC
26344877 T
1 T
26344878 ATTTATGTTC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (28 bp):
TTACATCGTCTTTACTGTCCCAACAGAC
Found at i:26344901 original size:33 final size:33
Alignment explanation
Indices: 26344859--26344947 Score: 110
Period size: 33 Copynumber: 2.7 Consensus size: 33
26344849 TTACCTCGTC
26344859 TTTATTGTCCCAACAGACTAT-T-TATGTTCTGTG
1 TTTATTGTCCCAACAGACTATCTCTAT-TT-TGTG
*
26344892 TTTATTGTCCCAACGGACTATCTCTATTTTGTG
1 TTTATTGTCCCAACAGACTATCTCTATTTTGTG
* * *
26344925 TTTACTGCCCCAACAAACTATCT
1 TTTATTGTCCCAACAGACTATCT
26344948 TTGTTATGCC
Statistics
Matches: 49, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
33 43 0.88
34 3 0.06
35 3 0.06
ACGTcount: A:0.22, C:0.24, G:0.12, T:0.42
Consensus pattern (33 bp):
TTTATTGTCCCAACAGACTATCTCTATTTTGTG
Found at i:26346486 original size:16 final size:16
Alignment explanation
Indices: 26346462--26346495 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
26346452 TGCAATTTGG
26346462 TTTAAATTTATTTTAT
1 TTTAAATTTATTTTAT
*
26346478 TTTATATTTATTTTAT
1 TTTAAATTTATTTTAT
26346494 TT
1 TT
26346496 CTTTTTCTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTAAATTTATTTTAT
Found at i:26354169 original size:33 final size:33
Alignment explanation
Indices: 26354129--26354500 Score: 273
Period size: 33 Copynumber: 11.2 Consensus size: 33
26354119 ACATCAATAG
** * *
26354129 AGAAAGTCTGTTGGGACAGTAAACACATAACAA
1 AGAAAGTCTACTGAGACAGTAAACACAGAACAA
* * *
26354162 AGAAAGTCCATTGAGACAGTAAACACAGAACAG
1 AGAAAGTCTACTGAGACAGTAAACACAGAACAA
* *
26354195 AGAAAGTCTACTGGGACAATAAACACAGAACAA
1 AGAAAGTCTACTGAGACAGTAAACACAGAACAA
* * * * * *
26354228 AAAAAGTCCACTGAGCCAATAAACACAGAATAG
1 AGAAAGTCTACTGAGACAGTAAACACAGAACAA
* * *
26354261 AGAAAGT-TCGCTGAGATAGTAAACACAGAACAG
1 AGAAAGTCT-ACTGAGACAGTAAACACAGAACAA
* * *
26354294 AGAAAGTCTGCTGGGATAGTAAACACAGAACAGA
1 AGAAAGTCTACTGAGACAGTAAACACAGAACA-A
* * * *
26354328 A-AAAGTCCACTGAGCCAGTAAATACAGAATAGA
1 AGAAAGTCTACTGAGACAGTAAACACAGAACA-A
* * * *
26354361 A-AAAGTCTGCTGAGATAGTAAGCACAGAATAA
1 AGAAAGTCTACTGAGACAGTAAACACAGAACAA
** * * * *
26354393 AGAAAGTCCGCTAAGATAGTAAACATAGAACAG
1 AGAAAGTCTACTGAGACAGTAAACACAGAACAA
** * * * *
26354426 AGAAAGTCCGCTGAGATAGTAAACACATAATAG
1 AGAAAGTCTACTGAGACAGTAAACACAGAACAA
* * ** *
26354459 AGATAGTCTGCTGAGACAAAAAAACACAGAACAG
1 AGAAAGTCTACTGAGAC-AGTAAACACAGAACAA
26354493 AGAAAGTC
1 AGAAAGTC
26354501 CACCAGGACA
Statistics
Matches: 278, Mismatches: 56, Indels: 9
0.81 0.16 0.03
Matches are distributed among these distances:
32 2 0.01
33 255 0.92
34 21 0.08
ACGTcount: A:0.48, C:0.16, G:0.21, T:0.15
Consensus pattern (33 bp):
AGAAAGTCTACTGAGACAGTAAACACAGAACAA
Found at i:26354211 original size:66 final size:66
Alignment explanation
Indices: 26354124--26354503 Score: 359
Period size: 66 Copynumber: 5.7 Consensus size: 66
26354114 CTATAACATC
* * * * *
26354124 AATAGAGAAAGTCTGTTGGGACAGTAAACACATAACAAAGAAAGTCCATTGAGACAGTAAACACA
1 AATAGAGAAAGTCTGCTGAGACAGTAAACACAGAACAAAGAAAGTCCACTGAGATAGTAAACACA
26354189 G
66 G
* * * * * ** *
26354190 AACAGAGAAAGTCTACTGGGACAATAAACACAGAACAAAAAAAGTCCACTGAGCCAATAAACACA
1 AATAGAGAAAGTCTGCTGAGACAGTAAACACAGAACAAAGAAAGTCCACTGAGATAGTAAACACA
26354255 G
66 G
* * ** *
26354256 AATAGAGAAAGT-TCGCTGAGATAGTAAACACAGAACAGAGAAAGTCTGCTGGGATAGTAAACAC
1 AATAGAGAAAGTCT-GCTGAGACAGTAAACACAGAACAAAGAAAGTCCACTGAGATAGTAAACAC
26354320 AG
65 AG
* * ** * * * ** *
26354322 AACAGAAAAAGTCCACTGAGCCAGTAAATACAGAATAGAA-AAAGTCTGCTGAGATAGTAAGCAC
1 AATAGAGAAAGTCTGCTGAGACAGTAAACACAGAACA-AAGAAAGTCCACTGAGATAGTAAACAC
26354386 AG
65 AG
* * * * * * *
26354388 AATAAAGAAAGTCCGCTAAGATAGTAAACATAGAACAGAGAAAGTCCGCTGAGATAGTAAACACA
1 AATAGAGAAAGTCTGCTGAGACAGTAAACACAGAACAAAGAAAGTCCACTGAGATAGTAAACACA
*
26354453 T
66 G
* ** *
26354454 AATAGAGATAGTCTGCTGAGACAAAAAAACACAGAACAGAGAAAGTCCAC
1 AATAGAGAAAGTCTGCTGAGAC-AGTAAACACAGAACAAAGAAAGTCCAC
26354504 CAGGACAATA
Statistics
Matches: 253, Mismatches: 56, Indels: 9
0.80 0.18 0.03
Matches are distributed among these distances:
65 2 0.01
66 227 0.90
67 24 0.09
ACGTcount: A:0.48, C:0.17, G:0.21, T:0.15
Consensus pattern (66 bp):
AATAGAGAAAGTCTGCTGAGACAGTAAACACAGAACAAAGAAAGTCCACTGAGATAGTAAACACA
G
Found at i:26354302 original size:99 final size:99
Alignment explanation
Indices: 26354145--26354515 Score: 393
Period size: 99 Copynumber: 3.7 Consensus size: 99
26354135 TCTGTTGGGA
* * * *** * * *
26354145 CAGTAAACACATAACAAAGAAAGTCCATTGAGACAGTAAACACAGAACAGAGAAAGTCTACTGGG
1 CAGTAAACACAGAATAGAGAAAGTCTGCTGAGATAGTAAACACAGAACAGAGAAAGTCCACTAGG
*
26354210 ACAATAAACACAGAACAAAAAAAGTCCACTGAGC
66 ACAATAAACACAGAACAGAAAAAGTCCACTGAGC
* ** *
26354244 CAATAAACACAGAATAGAGAAAGT-TCGCTGAGATAGTAAACACAGAACAGAGAAAGTCTGCTGG
1 CAGTAAACACAGAATAGAGAAAGTCT-GCTGAGATAGTAAACACAGAACAGAGAAAGTCCACTAG
* *
26354308 GATAGTAAACACAGAACAGAAAAAGTCCACTGAGC
65 GACAATAAACACAGAACAGAAAAAGTCCACTGAGC
* * * * * * *
26354343 CAGTAAATACAGAATAGAAAAAGTCTGCTGAGATAGTAAGCACAGAATAAAGAAAGTCCGCTAAG
1 CAGTAAACACAGAATAGAGAAAGTCTGCTGAGATAGTAAACACAGAACAGAGAAAGTCCACTAGG
* * * * * *
26354408 ATAGTAAACATAGAACAGAGAAAGTCCGCTGAGA
66 ACAATAAACACAGAACAGAAAAAGTCCACTGAGC
* * * * ** *
26354442 TAGTAAACACATAATAGAGATAGTCTGCTGAGACAAAAAAACACAGAACAGAGAAAGTCCACCAG
1 CAGTAAACACAGAATAGAGAAAGTCTGCTGAGA-TAGTAAACACAGAACAGAGAAAGTCCACTAG
26354507 GACAATAAA
65 GACAATAAA
26354516 AACGAGGTAA
Statistics
Matches: 228, Mismatches: 41, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
99 198 0.87
100 30 0.13
ACGTcount: A:0.49, C:0.17, G:0.20, T:0.14
Consensus pattern (99 bp):
CAGTAAACACAGAATAGAGAAAGTCTGCTGAGATAGTAAACACAGAACAGAGAAAGTCCACTAGG
ACAATAAACACAGAACAGAAAAAGTCCACTGAGC
Found at i:26358408 original size:24 final size:24
Alignment explanation
Indices: 26358368--26358413 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
26358358 GTCAAGATTA
*
26358368 TTATTTAATTAATATAATATATTC
1 TTATTTAATTAATATAAAATATTC
*
26358392 TTATTTAAGTTTA-ATAAAATAT
1 TTATTTAA-TTAATATAAAATAT
26358414 GTAAATTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 16 0.84
25 3 0.16
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.52
Consensus pattern (24 bp):
TTATTTAATTAATATAAAATATTC
Found at i:26367414 original size:18 final size:19
Alignment explanation
Indices: 26367378--26367415 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
26367368 TTAAAATTAG
* *
26367378 AAAAATTAAAAATATTTTA
1 AAAAAATAAAAATAATTTA
26367397 AAAAAATAAAAA-AATTTA
1 AAAAAATAAAAATAATTTA
26367415 A
1 A
26367416 TTTTAAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (19 bp):
AAAAAATAAAAATAATTTA
Found at i:26368123 original size:17 final size:18
Alignment explanation
Indices: 26368101--26368134 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
26368091 TAAAAAAATA
*
26368101 ATTTTTTTAT-ATTTTAT
1 ATTTTTTAATAATTTTAT
26368118 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
26368135 ATAATGTTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
ATTTTTTAATAATTTTAT
Found at i:26369548 original size:21 final size:21
Alignment explanation
Indices: 26369522--26369577 Score: 76
Period size: 21 Copynumber: 2.7 Consensus size: 21
26369512 AATAGCGGTG
* *
26369522 GCGGTGAGATTAGATATTGTA
1 GCGGTGAGATTAGATACTATA
*
26369543 GCGGTGAAATTAGATACTATA
1 GCGGTGAGATTAGATACTATA
*
26369564 GCAGTGAGATTAGA
1 GCGGTGAGATTAGA
26369578 AACAATAGTG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.34, C:0.07, G:0.30, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGATACTATA
Found at i:26369585 original size:21 final size:21
Alignment explanation
Indices: 26369541--26369585 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
26369531 TTAGATATTG
* * *
26369541 TAGCGGTGAAATTAGATACTA
1 TAGCAGTGAAATTAGAAACAA
*
26369562 TAGCAGTGAGATTAGAAACAA
1 TAGCAGTGAAATTAGAAACAA
26369583 TAG
1 TAG
26369586 TGGAGTGTGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.42, C:0.09, G:0.24, T:0.24
Consensus pattern (21 bp):
TAGCAGTGAAATTAGAAACAA
Found at i:26371724 original size:24 final size:22
Alignment explanation
Indices: 26371699--26371742 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
26371689 TACATACATA
*
26371699 TATAAAA-AAAATCTGTAAGTAT
1 TATAAAATAAAA-ATGTAAGTAT
26371721 TATAAAATAAAAATGTAAGTAT
1 TATAAAATAAAAATGTAAGTAT
26371743 GTGTGTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.57, C:0.02, G:0.09, T:0.32
Consensus pattern (22 bp):
TATAAAATAAAAATGTAAGTAT
Found at i:26371838 original size:7 final size:7
Alignment explanation
Indices: 26371822--26371851 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
26371812 GAATATAAAG
26371822 AATATAA
1 AATATAA
*
26371829 AATATGA
1 AATATAA
26371836 AATATAA
1 AATATAA
26371843 AATATAA
1 AATATAA
26371850 AA
1 AA
26371852 AGTATATGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (7 bp):
AATATAA
Found at i:26372107 original size:22 final size:23
Alignment explanation
Indices: 26372051--26372107 Score: 75
Period size: 22 Copynumber: 2.6 Consensus size: 23
26372041 AGTTTAAAAT
26372051 AAAATATATAAAAGAAAGTCTTA
1 AAAATATATAAAAGAAAGTCTTA
*
26372074 AATAATA-A-AAAAGACAGT-TTA
1 AA-AATATATAAAAGAAAGTCTTA
26372095 AAAATATATAAAA
1 AAAATATATAAAA
26372108 ATAGTGTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 4 0.13
21 6 0.20
22 13 0.43
23 3 0.10
24 4 0.13
ACGTcount: A:0.65, C:0.04, G:0.07, T:0.25
Consensus pattern (23 bp):
AAAATATATAAAAGAAAGTCTTA
Found at i:26372837 original size:13 final size:13
Alignment explanation
Indices: 26372819--26372843 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26372809 AAATGCGTAG
26372819 ATAAATAAATGAA
1 ATAAATAAATGAA
26372832 ATAAATAAATGA
1 ATAAATAAATGA
26372844 TAGATGATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (13 bp):
ATAAATAAATGAA
Found at i:26390279 original size:30 final size:30
Alignment explanation
Indices: 26390243--26390308 Score: 123
Period size: 30 Copynumber: 2.2 Consensus size: 30
26390233 ATTTTATACA
*
26390243 TCATCATTATCTCATTTTGCCACTACATTT
1 TCATCATTATCTCATTTTGCCACTACATTC
26390273 TCATCATTATCTCATTTTGCCACTACATTC
1 TCATCATTATCTCATTTTGCCACTACATTC
26390303 TCATCA
1 TCATCA
26390309 CGATATTATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.24, C:0.29, G:0.03, T:0.44
Consensus pattern (30 bp):
TCATCATTATCTCATTTTGCCACTACATTC
Found at i:26391709 original size:23 final size:22
Alignment explanation
Indices: 26391675--26391718 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
26391665 TTATGAAACA
*
26391675 TATAAGGGACTCTATCACCACC
1 TATAAGGGACTCTATAACCACC
26391697 TATAAGTGGACTCTATAACCAC
1 TATAAG-GGACTCTATAACCAC
26391719 ATATTAGATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (22 bp):
TATAAGGGACTCTATAACCACC
Found at i:26393337 original size:85 final size:84
Alignment explanation
Indices: 26393188--26393346 Score: 212
Period size: 85 Copynumber: 1.9 Consensus size: 84
26393178 AAAAAATGCC
* * *
26393188 GCTATAGAACATGACCTTTAGCGGCATTTTACCCATAAACGCCGCTAAAGAACATGACCATTAGC
1 GCTAAAGAACATGACATTTAGCGGCATTTTACCCACAAACGCCGCTAAAGAACATGACCATTAGC
26393253 GGCGCTTTATCACAAACGCT
66 GGCG-TTTATCACAAACGCT
* * * * * *
26393273 GCTAAAGAACATGACATTTAGCGGCGCTTTTA-TCACAAACGTCGCTAAATAACATGATCTTTAG
1 GCTAAAGAACATGACATTTAGCGGC-ATTTTACCCACAAACGCCGCTAAAGAACATGACCATTAG
26393337 CGGCGTTTAT
65 CGGCGTTTAT
26393347 GAAAATATGC
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
84 5 0.08
85 54 0.84
86 5 0.08
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.26
Consensus pattern (84 bp):
GCTAAAGAACATGACATTTAGCGGCATTTTACCCACAAACGCCGCTAAAGAACATGACCATTAGC
GGCGTTTATCACAAACGCT
Found at i:26393341 original size:43 final size:42
Alignment explanation
Indices: 26393187--26393341 Score: 188
Period size: 43 Copynumber: 3.6 Consensus size: 42
26393177 GAAAAAATGC
* * * *
26393187 CGCTATAGAACATGACCTTTAGCGGC-ATTTTACCCATAAACG
1 CGCTAAAGAACATGACCTTTAGCGGCGCTTTTA-TCACAAACG
*
26393229 CCGCTAAAGAACATGACCATTAGCGGCGC-TTTATCACAAACG
1 -CGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCACAAACG
*
26393271 CTGCTAAAGAACATGACATTTAGCGGCGCTTTTATCACAAACG
1 C-GCTAAAGAACATGACCTTTAGCGGCGCTTTTATCACAAACG
* *
26393314 TCGCTAAATAACATGATCTTTAGCGGCG
1 -CGCTAAAGAACATGACCTTTAGCGGCG
26393342 TTTATGAAAA
Statistics
Matches: 98, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
41 1 0.01
42 32 0.33
43 64 0.65
44 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.25
Consensus pattern (42 bp):
CGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCACAAACG
Found at i:26399412 original size:19 final size:18
Alignment explanation
Indices: 26399369--26399405 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
26399359 ATATATTATG
*
26399369 ATTTTAGTAAATTCATAT
1 ATTTTATTAAATTCATAT
26399387 ATTTTATTAAATT-ATAT
1 ATTTTATTAAATTCATAT
26399404 AT
1 AT
26399406 AATTTATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (18 bp):
ATTTTATTAAATTCATAT
Found at i:26399578 original size:44 final size:45
Alignment explanation
Indices: 26399523--26399620 Score: 144
Period size: 44 Copynumber: 2.2 Consensus size: 45
26399513 CTATTACACA
* * *
26399523 TCTATTCCATTCAACCAAACACAAGAATACC-ATTATGCCTCTAT
1 TCTATTACATTCAACCAAACAAAAGAATACCTATTACGCCTCTAT
*
26399567 TCTATTACATTCAACCAAACAAAAGATTACCTATTACGCCTCTAT
1 TCTATTACATTCAACCAAACAAAAGAATACCTATTACGCCTCTAT
*
26399612 TCCATTACA
1 TCTATTACA
26399621 CCTCTATTCC
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 28 0.58
45 20 0.42
ACGTcount: A:0.37, C:0.29, G:0.04, T:0.31
Consensus pattern (45 bp):
TCTATTACATTCAACCAAACAAAAGAATACCTATTACGCCTCTAT
Found at i:26399624 original size:16 final size:16
Alignment explanation
Indices: 26399599--26400068 Score: 796
Period size: 16 Copynumber: 29.4 Consensus size: 16
26399589 AAGATTACCT
*
26399599 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
26399615 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
26399631 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
26399647 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
26399663 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
26399679 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
26399695 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
26399711 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
26399727 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
26399743 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
26399759 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
26399775 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
26399791 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
26399807 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
26399823 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
26399839 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
26399855 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
26399871 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
26399887 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
26399903 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
26399919 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
26399935 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
26399951 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
26399967 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
26399983 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
26399999 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
26400015 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
26400031 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
*
26400047 ATTACGCCTCTATTCC
1 ATTACACCTCTATTCC
*
26400063 AATACA
1 ATTACA
26400069 GCGAACCAAA
Statistics
Matches: 424, Mismatches: 30, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 424 1.00
ACGTcount: A:0.22, C:0.37, G:0.03, T:0.37
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:26399640 original size:32 final size:32
Alignment explanation
Indices: 26399599--26400068 Score: 931
Period size: 32 Copynumber: 14.7 Consensus size: 32
26399589 AAGATTACCT
26399599 ATTACGCCTCTATTCCATTACACCTCTATTCC
1 ATTACGCCTCTATTCCATTACACCTCTATTCC
26399631 ATTACGCCTCTATTCCATTACACCTCTATTCC
1 ATTACGCCTCTATTCCATTACACCTCTATTCC
26399663 ATTACGCCTCTATTCCATTACACCTCTATTCC
1 ATTACGCCTCTATTCCATTACACCTCTATTCC
26399695 ATTACGCCTCTATTCCATTACACCTCTATTCC
1 ATTACGCCTCTATTCCATTACACCTCTATTCC
26399727 ATTACGCCTCTATTCCATTACACCTCTATTCC
1 ATTACGCCTCTATTCCATTACACCTCTATTCC
26399759 ATTACGCCTCTATTCCATTACACCTCTATTCC
1 ATTACGCCTCTATTCCATTACACCTCTATTCC
26399791 ATTACGCCTCTATTCCATTACACCTCTATTCC
1 ATTACGCCTCTATTCCATTACACCTCTATTCC
26399823 ATTACGCCTCTATTCCATTACACCTCTATTCC
1 ATTACGCCTCTATTCCATTACACCTCTATTCC
26399855 ATTACGCCTCTATTCCATTACACCTCTATTCC
1 ATTACGCCTCTATTCCATTACACCTCTATTCC
26399887 ATTACGCCTCTATTCCATTACACCTCTATTCC
1 ATTACGCCTCTATTCCATTACACCTCTATTCC
26399919 ATTACGCCTCTATTCCATTACACCTCTATTCC
1 ATTACGCCTCTATTCCATTACACCTCTATTCC
26399951 ATTACGCCTCTATTCCATTACACCTCTATTCC
1 ATTACGCCTCTATTCCATTACACCTCTATTCC
26399983 ATTACGCCTCTATTCCATTACACCTCTATTCC
1 ATTACGCCTCTATTCCATTACACCTCTATTCC
26400015 ATTACGCCTCTATTCCATTACACCTCTATTCC
1 ATTACGCCTCTATTCCATTACACCTCTATTCC
*
26400047 ATTACGCCTCTATTCCAATACA
1 ATTACGCCTCTATTCCATTACA
26400069 GCGAACCAAA
Statistics
Matches: 437, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 437 1.00
ACGTcount: A:0.22, C:0.37, G:0.03, T:0.37
Consensus pattern (32 bp):
ATTACGCCTCTATTCCATTACACCTCTATTCC
Found at i:26401907 original size:8 final size:7
Alignment explanation
Indices: 26401832--26402065 Score: 84
Period size: 7 Copynumber: 32.9 Consensus size: 7
26401822 ACTAATTAAT
*
26401832 CTAAATC
1 CTAAACC
26401839 CTAAACCC
1 CTAAA-CC
*
26401847 CTAACCC
1 CTAAACC
*
26401854 CT-ATCTC
1 CTAAAC-C
26401861 CTAAACC
1 CTAAACC
*
26401868 CTAAATC
1 CTAAACC
* *
26401875 ATAAAAC
1 CTAAACC
*
26401882 TTAAACC
1 CTAAACC
*
26401889 ATAAACC
1 CTAAACC
26401896 CTAAATCC
1 CTAAA-CC
*
26401904 CT-AACA
1 CTAAACC
*
26401910 CTTAACC
1 CTAAACC
*
26401917 CTTAACCC
1 C-TAAACC
26401925 CTAAACC
1 CTAAACC
*
26401932 TTAAACC
1 CTAAACC
*
26401939 C-CAACTC
1 CTAAAC-C
*
26401946 TTAAACC
1 CTAAACC
*
26401953 ATAAACC
1 CTAAACC
*
26401960 ATAAACC
1 CTAAACC
*
26401967 AC-AATCC
1 -CTAAACC
26401974 CTAAACC
1 CTAAACC
*
26401981 CATAATCC
1 C-TAAACC
*
26401989 ATAAACC
1 CTAAACC
*
26401996 TTAAA--
1 CTAAACC
*
26402001 ATAGTAACTC
1 CTA--AAC-C
*
26402011 TTAAACC
1 CTAAACC
*
26402018 TTAAACC
1 CTAAACC
*
26402025 TTAAACC
1 CTAAACC
*
26402032 CTAAACT
1 CTAAACC
* *
26402039 ATATACC
1 CTAAACC
26402046 CTAAACC
1 CTAAACC
*
26402053 ATAAACC
1 CTAAACC
26402060 CTAAAC
1 CTAAAC
26402066 TATAATGATA
Statistics
Matches: 171, Mismatches: 40, Indels: 32
0.70 0.16 0.13
Matches are distributed among these distances:
5 2 0.01
6 9 0.05
7 131 0.77
8 27 0.16
10 2 0.01
ACGTcount: A:0.43, C:0.34, G:0.00, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:26402421 original size:40 final size:40
Alignment explanation
Indices: 26402377--26402479 Score: 125
Period size: 40 Copynumber: 2.6 Consensus size: 40
26402367 TTTTTTTGTT
* * *
26402377 GCGTTTTTGATAAAGCGCCGCTAAAGCTCGATCTATAGCG
1 GCGTTTTTCAAAAAGCGCCGCTAAAGCTCAATCTATAGCG
* * *
26402417 GCGTTTTTCAAAAAGTGTCGCTAATGCTCAATCTATAGCG
1 GCGTTTTTCAAAAAGCGCCGCTAAAGCTCAATCTATAGCG
* * *
26402457 GTGTTTTTCAAAAAACACCGCTA
1 GCGTTTTTCAAAAAGCGCCGCTA
26402480 GTGCCACTAA
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.30
Consensus pattern (40 bp):
GCGTTTTTCAAAAAGCGCCGCTAAAGCTCAATCTATAGCG
Found at i:26402596 original size:40 final size:40
Alignment explanation
Indices: 26402559--26402638 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
26402549 CCACTAATAG
26402559 TCGACCTATAGCGGCGTTGTTCAAAAAGCACCGCTAATGC
1 TCGACCTATAGCGGCGTTGTTCAAAAAGCACCGCTAATGC
* * * **
26402599 TCGATCTATAGCGGTGTTTTTCAAAAAGTGCCGCTAATGC
1 TCGACCTATAGCGGCGTTGTTCAAAAAGCACCGCTAATGC
26402639 CACTAATGCT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.28
Consensus pattern (40 bp):
TCGACCTATAGCGGCGTTGTTCAAAAAGCACCGCTAATGC
Found at i:26402748 original size:154 final size:155
Alignment explanation
Indices: 26402367--26402792 Score: 557
Period size: 155 Copynumber: 2.8 Consensus size: 155
26402357 ACAAATAAAT
** * * * * * *
26402367 TTTTTTTGTTGCGTTTTTGATAAAGCGCCGCTAAAGCTCGATCTATAGCGGCGTTTTTCAAAAAG
1 TTTTTTTGCCGCGTTTTTCAAAAAGCGCCACTAATGGTCGACCTATAGCGGCGTTTTTCAAAAAG
* * *
26402432 TGTCGCTAATGCTCAATCTATAGCGGTGTTTTTCAAAAAACACCGCTAGTGCCACTAAAGCTCAA
66 TGCCGCTAATGCTCAATCTATAGCGGTGTTTTTCAAAAAGCACCGCTAATGCCACTAAAGCTCAA
* * * *
26402497 CATAAAATGATGGCGTTGTGCTTAA
131 CATAAAACGACGGCCTTATGCTTAA
* * * *
26402522 TTTTTTTGCCGCGTTTTCCAAAAAGTGCCACTAATAGTCGACCTATAGCGGCGTTGTTCAAAAAG
1 TTTTTTTGCCGCGTTTTTCAAAAAGCGCCACTAATGGTCGACCTATAGCGGCGTTTTTCAAAAAG
** * ** *
26402587 CACCGCTAATGCTCGATCTATAGCGGTGTTTTTCAAAAAGTGCCGCTAATGCCACTAATGCTCAA
66 TGCCGCTAATGCTCAATCTATAGCGGTGTTTTTCAAAAAGCACCGCTAATGCCACTAAAGCTCAA
26402652 CATAAAACGACGGCCTTATGCTTAA
131 CATAAAACGACGGCCTTATGCTTAA
* *
26402677 TTTTTTT-CGGGGTTTTTCAAAAAGCGCCACTAATGGTCGACCTATAGCGGCGTTTTTCAAAAAG
1 TTTTTTTGCCGCGTTTTTCAAAAAGCGCCACTAATGGTCGACCTATAGCGGCGTTTTTCAAAAAG
* * * * *
26402741 TGCCGCTAATGCTCTACCTATAGTGGCGTTTTTCAAAAAGCACCACTAATGC
66 TGCCGCTAATGCTCAATCTATAGCGGTGTTTTTCAAAAAGCACCGCTAATGC
26402793 TCGATCTATA
Statistics
Matches: 231, Mismatches: 40, Indels: 1
0.85 0.15 0.00
Matches are distributed among these distances:
154 94 0.41
155 137 0.59
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (155 bp):
TTTTTTTGCCGCGTTTTTCAAAAAGCGCCACTAATGGTCGACCTATAGCGGCGTTTTTCAAAAAG
TGCCGCTAATGCTCAATCTATAGCGGTGTTTTTCAAAAAGCACCGCTAATGCCACTAAAGCTCAA
CATAAAACGACGGCCTTATGCTTAA
Found at i:26402750 original size:40 final size:40
Alignment explanation
Indices: 26402688--26402872 Score: 253
Period size: 40 Copynumber: 4.6 Consensus size: 40
26402678 TTTTTTCGGG
* *
26402688 GTTTTTCAAAAAGCGCCACTAATGGTCGACCTATAGCGGC
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCGGC
* * *
26402728 GTTTTTCAAAAAGTGCCGCTAATGCTCTACCTATAGTGGC
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCGGC
* * * *
26402768 GTTTTTCAAAAAGCACCACTAATGCTCGATCTATAGCGGA
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCGGC
* * * *
26402808 GTTTTTCAAAAAGTGCTGCTAATGCTCGATCTATAGCGGT
1 GTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCGGC
26402848 GTTTTTCAAAAAGCGCCGCTAATGC
1 GTTTTTCAAAAAGCGCCGCTAATGC
26402873 CACTACAGCT
Statistics
Matches: 126, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 126 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (40 bp):
GTTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCGGC
Found at i:26402802 original size:80 final size:80
Alignment explanation
Indices: 26402688--26402872 Score: 280
Period size: 80 Copynumber: 2.3 Consensus size: 80
26402678 TTTTTTCGGG
* *
26402688 GTTTTTCAAAAAGCGCCACTAATGGTCGACCTATAGCGGCGTTTTTCAAAAAGTGCCGCTAATGC
1 GTTTTTCAAAAAGCGCCACTAATGCTCGACCTATAGCGGAGTTTTTCAAAAAGTGCCGCTAATGC
* *
26402753 TCTACCTATAGTGGC
66 TCGACCTATAGCGGC
* * *
26402768 GTTTTTCAAAAAGCACCACTAATGCTCGATCTATAGCGGAGTTTTTCAAAAAGTGCTGCTAATGC
1 GTTTTTCAAAAAGCGCCACTAATGCTCGACCTATAGCGGAGTTTTTCAAAAAGTGCCGCTAATGC
* *
26402833 TCGATCTATAGCGGT
66 TCGACCTATAGCGGC
*
26402848 GTTTTTCAAAAAGCGCCGCTAATGC
1 GTTTTTCAAAAAGCGCCACTAATGC
26402873 CACTACAGCT
Statistics
Matches: 94, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
80 94 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.30
Consensus pattern (80 bp):
GTTTTTCAAAAAGCGCCACTAATGCTCGACCTATAGCGGAGTTTTTCAAAAAGTGCCGCTAATGC
TCGACCTATAGCGGC
Found at i:26405737 original size:7 final size:7
Alignment explanation
Indices: 26405725--26405765 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
26405715 TATAAGTGCA
26405725 TATATAT
1 TATATAT
26405732 TATATAT
1 TATATAT
26405739 TATATAT
1 TATATAT
* *
26405746 AATACAT
1 TATATAT
26405753 T-TATAT
1 TATATAT
26405759 TATATAT
1 TATATAT
26405766 AACCCCAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
6 5 0.17
7 24 0.83
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (7 bp):
TATATAT
Found at i:26407313 original size:14 final size:14
Alignment explanation
Indices: 26407279--26407313 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
26407269 TTCACTAACC
* *
26407279 CCCAATCCTACTTA
1 CCCAATTCTACTAA
26407293 CCCAATTCTACTAA
1 CCCAATTCTACTAA
26407307 CCCAATT
1 CCCAATT
26407314 TTTAGGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.31, C:0.40, G:0.00, T:0.29
Consensus pattern (14 bp):
CCCAATTCTACTAA
Found at i:26409558 original size:21 final size:21
Alignment explanation
Indices: 26409508--26409558 Score: 50
Period size: 21 Copynumber: 2.4 Consensus size: 21
26409498 AATTTAAATC
*
26409508 TATTTAAAGATCCATTAAAAA
1 TATTTAAAAATCCATTAAAAA
** *
26409529 TATAGAAAAATACC-TTTAAAA
1 TATTTAAAAAT-CCATTAAAAA
26409550 TATTTAAAA
1 TATTTAAAA
26409559 TTCCCCTAAA
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
21 21 0.91
22 2 0.09
ACGTcount: A:0.55, C:0.08, G:0.04, T:0.33
Consensus pattern (21 bp):
TATTTAAAAATCCATTAAAAA
Found at i:26410599 original size:365 final size:368
Alignment explanation
Indices: 26409923--26410647 Score: 1087
Period size: 365 Copynumber: 2.0 Consensus size: 368
26409913 CAAATTCTAG
*
26409923 TTATTTTGTGTAAAATTAACATTTATACCTAGGGTTACAAGGGTATGGATGGCACACACATTAAA
1 TTATTTTGTGTAAAATTAACATCTATACCTAGGGTTACAAGGGTATGGATGGCACACACATTAAA
* *
26409988 AATAATGGATTTTGTAAAAAAAAAAATAGTTATTTTGCATGAGAAAGGATTTGAACTTAGAACCT
66 AACAATGGATTTTGT---AAAAAAAATAGTTATTTTGCATGAGAAAGGATTCGAACTTAGAACCT
* * * ** *
26410053 CAATTTAATTTTCGTGCTTTTTCATTTATCAATTAACCACTAGGCTATTTCTTTATATTTGAAAT
128 CAATTTAATTTGCATGCTTTTGCATTTATCAATTAACCACTAGAATATTTCCTTATATTTGAAAT
* * *
26410118 AATTTTACAATATTTATTTTAAAAATAAGGTGTGTCACATACTAGGGTTTGAGGCAAAATTAATA
193 AATTTTACAATATTTATTTTAAAAACAAGGCGTGTCACATACTAGGGTTTGAGGCAAAATTAACA
*
26410183 AAATAATAAAAATAGTGAGGGAGAAGGGATTTGAACTTGGATTTCAAGGAACGTTTCACTAACAC
258 AAATAATAAAAATAGTGAGGGAGAAGGGATTTGAACTTGGATTTCAAGGAACGTTTCACAAACAC
* * * * *
26410248 TTATCCAATAAAATAATATATTATTTATTCCTAAACCCTAAACTAA
323 ATATCCAACAAAACAATACATCATTTATTCCTAAACCCTAAACTAA
* * *
26410294 TTATTTTGTGTAAAATTATCATCTATACCTAGGGTTACAAGGTTATGGATGGCATACACATTAAA
1 TTATTTTGTGTAAAATTAACATCTATACCTAGGGTTACAAGGGTATGGATGGCACACACATTAAA
* * * * * *
26410359 AACAATGGATTTTGT-ATAAAAA-AGTTGTTTTGCATGGGAAATGATTCGAACTTGGGACCTCAA
66 AACAATGGATTTTGTAAAAAAAATAGTTATTTTGCATGAGAAAGGATTCGAACTTAGAACCTCAA
* *
26410422 TTTAATTTGCATGCTTTTGCATTTATCAATTAACCACTAGAATATTTCCTTCTTTTTGAAATAAT
131 TTTAATTTGCATGCTTTTGCATTTATCAATTAACCACTAGAATATTTCCTTATATTTGAAATAAT
* *
26410487 TTTGCAATA-TTATTTTAAAAACAAGGCGTGTTACATACTAGGGTTTGAGGCAAAATTAACAAAA
196 TTTACAATATTTATTTTAAAAACAAGGCGTGTCACATACTAGGGTTTGAGGCAAAATTAACAAAA
* *
26410551 TATTAAAAATGGTGAGGGAGAAGGGATTTGAACTTGGATTTCAAGGAACGTTTCACAAACACATA
261 TAATAAAAATAGTGAGGGAGAAGGGATTTGAACTTGGATTTCAAGGAACGTTTCACAAACACATA
* *
26410616 TTCAACAAACCAATACATCATTTATTCCTAAA
326 TCCAACAAAACAATACATCATTTATTCCTAAA
26410648 AACTCATTGA
Statistics
Matches: 319, Mismatches: 35, Indels: 6
0.89 0.10 0.02
Matches are distributed among these distances:
365 138 0.43
366 100 0.31
367 6 0.02
371 75 0.24
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.35
Consensus pattern (368 bp):
TTATTTTGTGTAAAATTAACATCTATACCTAGGGTTACAAGGGTATGGATGGCACACACATTAAA
AACAATGGATTTTGTAAAAAAAATAGTTATTTTGCATGAGAAAGGATTCGAACTTAGAACCTCAA
TTTAATTTGCATGCTTTTGCATTTATCAATTAACCACTAGAATATTTCCTTATATTTGAAATAAT
TTTACAATATTTATTTTAAAAACAAGGCGTGTCACATACTAGGGTTTGAGGCAAAATTAACAAAA
TAATAAAAATAGTGAGGGAGAAGGGATTTGAACTTGGATTTCAAGGAACGTTTCACAAACACATA
TCCAACAAAACAATACATCATTTATTCCTAAACCCTAAACTAA
Found at i:26415088 original size:16 final size:16
Alignment explanation
Indices: 26415050--26415088 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
26415040 TTTGAGTTCC
26415050 AAAATTGTGTTTCAAA
1 AAAATTGTGTTTCAAA
26415066 AAGAATTGAT-TTTCAAA
1 AA-AATTG-TGTTTCAAA
26415083 AAAATT
1 AAAATT
26415089 AGATAATTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 6 0.29
17 14 0.67
18 1 0.05
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.36
Consensus pattern (16 bp):
AAAATTGTGTTTCAAA
Found at i:26436402 original size:59 final size:62
Alignment explanation
Indices: 26436286--26436402 Score: 150
Period size: 62 Copynumber: 1.9 Consensus size: 62
26436276 AATGATTATC
* * * *
26436286 TTAATATTAAATTAAATTTAATGTTTATCTTGTAGATAAACATTCTATTATTTTAATAAGAT
1 TTAATATTAAATTAAATCTAATATTTATCTTGTAGATAAACATTATATTAATTTAATAAGAT
* * *
26436348 TTAATATTAAATTTAATCTCATATTTAT-TT-T-GATAAATATTATATTAATTTAATA
1 TTAATATTAAATTAAATCTAATATTTATCTTGTAGATAAACATTATATTAATTTAATA
26436403 TTAAAGTGAT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
59 21 0.44
60 1 0.02
61 2 0.04
62 24 0.50
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (62 bp):
TTAATATTAAATTAAATCTAATATTTATCTTGTAGATAAACATTATATTAATTTAATAAGAT
Found at i:26438609 original size:43 final size:43
Alignment explanation
Indices: 26438561--26438676 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 43
26438551 CCAATCAACA
* * * *
26438561 CAAATATACTTGCACACACAGTGCATCATCT-GACGAATCGAAG
1 CAAATATACTAGCACACATAGTGCATCAT-TAGACGAACCAAAG
**
26438604 CAAATATACTAAAACACATAGTGCATCATTAGACGAACCAAAG
1 CAAATATACTAGCACACATAGTGCATCATTAGACGAACCAAAG
* *
26438647 TAAATATACTGGCACACATAGTGCATCATT
1 CAAATATACTAGCACACATAGTGCATCATT
26438677 GATCTACAAC
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
42 1 0.02
43 61 0.98
ACGTcount: A:0.41, C:0.22, G:0.14, T:0.22
Consensus pattern (43 bp):
CAAATATACTAGCACACATAGTGCATCATTAGACGAACCAAAG
Found at i:26445970 original size:88 final size:88
Alignment explanation
Indices: 26445852--26446034 Score: 332
Period size: 88 Copynumber: 2.1 Consensus size: 88
26445842 CCTATTGAAT
*
26445852 TTGG-TATCATATGATGGATATCTGGTCCTATTCATCCTCAGATTTGTTTTTAGAGCTTTTGTGA
1 TTGGTTATCATATGATGGATATCTGGTCCTATTCAACCTCAGATTTGTTTTTAGAGCTTTTGTGA
26445916 GCTCGTATAAATCCTGTAAATGG
66 GCTCGTATAAATCCTGTAAATGG
*
26445939 TTGGTTATCATATGATGGATATCTGGTCCTATTCAACCTTAGATTTGTTTTTAGAGCTTTTGTGA
1 TTGGTTATCATATGATGGATATCTGGTCCTATTCAACCTCAGATTTGTTTTTAGAGCTTTTGTGA
*
26446004 GCTCGTATAAATCCTGTAAATTG
66 GCTCGTATAAATCCTGTAAATGG
26446027 TTGGTTAT
1 TTGGTTAT
26446035 TCTAATTAAT
Statistics
Matches: 92, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
87 4 0.04
88 88 0.96
ACGTcount: A:0.23, C:0.14, G:0.20, T:0.43
Consensus pattern (88 bp):
TTGGTTATCATATGATGGATATCTGGTCCTATTCAACCTCAGATTTGTTTTTAGAGCTTTTGTGA
GCTCGTATAAATCCTGTAAATGG
Found at i:26456010 original size:12 final size:13
Alignment explanation
Indices: 26455987--26456015 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
26455977 TTTTGTTTTG
26455987 TTTCCTTTTTCTT
1 TTTCCTTTTTCTT
26456000 TTTCC-TTTTCTT
1 TTTCCTTTTTCTT
26456012 TTTC
1 TTTC
26456016 ACTCTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTCCTTTTTCTT
Found at i:26457020 original size:23 final size:23
Alignment explanation
Indices: 26456980--26457029 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
26456970 ATTTCCAAAC
*
26456980 AAAAATTAAAACATCCAAAATTT
1 AAAAATTAAAACATCCAAAAATT
*
26457003 AAAAATTAAAA-GTCCCAAAAATT
1 AAAAATTAAAACAT-CCAAAAATT
26457026 AAAA
1 AAAA
26457030 TAAAATTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 1 0.04
23 23 0.96
ACGTcount: A:0.64, C:0.12, G:0.02, T:0.22
Consensus pattern (23 bp):
AAAAATTAAAACATCCAAAAATT
Found at i:26457816 original size:175 final size:177
Alignment explanation
Indices: 26457525--26457876 Score: 690
Period size: 175 Copynumber: 2.0 Consensus size: 177
26457515 TGTGCTTACA
26457525 ATTGAGCTCAAAGTACTGTGTGTAGATGGTGTAATAGGCCAATTTTGGCTTGGGCCTATCCAAAA
1 ATTGAGCTCAAAGTACTGTGTGTAGATGGTGTAATAGGCCAATTTTGGCTTGGGCCTATCCAAAA
26457590 TAAACCAAATAAAAACCCAAAAAAATAAAAAAATAAAAGTCCAAATAACAATTACAAATCAACCC
66 TAAACCAAATAAAAACCCAAAAAAATAAAAAAATAAAAGTCCAAATAACAATTACAAATCAACCC
26457655 AAATAATTAAAACCCAAAACCAATAAATAACCC-AA-CCAAAACAGG
131 AAATAATTAAAACCCAAAACCAATAAATAACCCAAACCCAAAACAGG
26457700 ATTGAGCTCAAAGTACTGTGTGTAGATGGTGTAATAGGCCAATTTTGGCTTGGGCCTATCCAAAA
1 ATTGAGCTCAAAGTACTGTGTGTAGATGGTGTAATAGGCCAATTTTGGCTTGGGCCTATCCAAAA
26457765 TAAACCAAATAAAAACCCAAAAAAATAAAAAAATAAAAGTCCAAATAACAATTACAAATCAACCC
66 TAAACCAAATAAAAACCCAAAAAAATAAAAAAATAAAAGTCCAAATAACAATTACAAATCAACCC
26457830 AAATAATTAAAACCCAAAACCAATAAATAACCCAAACCCAAAACAGG
131 AAATAATTAAAACCCAAAACCAATAAATAACCCAAACCCAAAACAGG
26457877 CCCAATAACC
Statistics
Matches: 175, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
175 163 0.93
176 2 0.01
177 10 0.06
ACGTcount: A:0.50, C:0.20, G:0.11, T:0.19
Consensus pattern (177 bp):
ATTGAGCTCAAAGTACTGTGTGTAGATGGTGTAATAGGCCAATTTTGGCTTGGGCCTATCCAAAA
TAAACCAAATAAAAACCCAAAAAAATAAAAAAATAAAAGTCCAAATAACAATTACAAATCAACCC
AAATAATTAAAACCCAAAACCAATAAATAACCCAAACCCAAAACAGG
Found at i:26459202 original size:25 final size:25
Alignment explanation
Indices: 26459166--26459218 Score: 97
Period size: 25 Copynumber: 2.1 Consensus size: 25
26459156 TATTATACAT
26459166 TTGTTTTAAAATTTATTATGTATTA
1 TTGTTTTAAAATTTATTATGTATTA
*
26459191 TTGTTTTGAAATTTATTATGTATTA
1 TTGTTTTAAAATTTATTATGTATTA
26459216 TTG
1 TTG
26459219 ACTGTTGTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.60
Consensus pattern (25 bp):
TTGTTTTAAAATTTATTATGTATTA
Found at i:26468757 original size:20 final size:20
Alignment explanation
Indices: 26468704--26468757 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
26468694 TATTTAAGCT
*
26468704 AAAGTAAGTAAATAAAATGG
1 AAAGTAAGTAAATGAAATGG
*
26468724 AAAGTAAGTAAATGCAATGG
1 AAAGTAAGTAAATGAAATGG
26468744 AAAGTAAGTAAATG
1 AAAGTAAGTAAATG
26468758 GAAGGGTTCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.56, C:0.02, G:0.22, T:0.20
Consensus pattern (20 bp):
AAAGTAAGTAAATGAAATGG
Found at i:26478370 original size:30 final size:30
Alignment explanation
Indices: 26478313--26478374 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
26478303 GATTTTTGAA
* *
26478313 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCACCAAATTTTT
26478343 AATATTTACAAAAAGA-GCAACCAAATTTTT
1 AATATTTACAAAAAGAGGC-ACCAAATTTTT
26478373 AA
1 AA
26478375 AAATAATTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 2 0.07
30 27 0.93
ACGTcount: A:0.48, C:0.11, G:0.08, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAATTTTT
Found at i:26481278 original size:21 final size:20
Alignment explanation
Indices: 26481254--26481295 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 20
26481244 TGAAATGCAA
26481254 TCAACATAACA-TGAATTAAAT
1 TCAACATAA-ATTG-ATTAAAT
*
26481275 TCAAGATAAATTGATTAAAT
1 TCAACATAAATTGATTAAAT
26481295 T
1 T
26481296 AACCATTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.50, C:0.10, G:0.07, T:0.33
Consensus pattern (20 bp):
TCAACATAAATTGATTAAAT
Found at i:26481886 original size:14 final size:14
Alignment explanation
Indices: 26481867--26481893 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26481857 CATTTCTTGG
26481867 TCGGTTCAGTTCAC
1 TCGGTTCAGTTCAC
26481881 TCGGTTCAGTTCA
1 TCGGTTCAGTTCA
26481894 ACTAGACCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (14 bp):
TCGGTTCAGTTCAC
Found at i:26485075 original size:27 final size:27
Alignment explanation
Indices: 26485045--26485503 Score: 551
Period size: 27 Copynumber: 17.0 Consensus size: 27
26485035 GTATAACAGC
** *
26485045 CATTTTATGCTATGGGGGTATTTTGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
* *
26485072 CATTTTAACCTATGGGGGTATTTCAGT
1 CATTTTACCCTATGGGGGTATTTCGGT
* * * *
26485099 CATTCTACACTATGGGGTTATTTCGAT
1 CATTTTACCCTATGGGGGTATTTCGGT
* *
26485126 CATTCTACCCTATGGGGTTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
* * * *
26485153 CATTTTAACCTATGAGGGTATTTTGAT
1 CATTTTACCCTATGGGGGTATTTCGGT
* * **
26485180 CATTCTACCCTATGTGGGTATTTTAGT
1 CATTTTACCCTATGGGGGTATTTCGGT
* *
26485207 TATTTTACCCTATGGGGGTATTTCAGT
1 CATTTTACCCTATGGGGGTATTTCGGT
26485234 -ATTTTACCCTATGGGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
* * *
26485260 CATTTTATCCTATGAGGGTATTTCAGT
1 CATTTTACCCTATGGGGGTATTTCGGT
* * *
26485287 CATTTTACTCAATAGGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
*
26485314 CATTTTACCCTATGGGGGTATTTCGAT
1 CATTTTACCCTATGGGGGTATTTCGGT
* * * *
26485341 TATTCTACCCTCTGGGGGTACTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
* *
26485368 CATTCTACTCTATGGGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
* * *
26485395 CATTTTACCCTATGAGGATATTTCAGT
1 CATTTTACCCTATGGGGGTATTTCGGT
**
26485422 CATTTTACCCTATAAGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
*
26485449 CATTTTACCCTATAGGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
26485476 CATTTTACCCTATGGGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGT
26485503 C
1 C
26485504 CAACATGGCC
Statistics
Matches: 371, Mismatches: 60, Indels: 2
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 0.07
27 346 0.93
ACGTcount: A:0.19, C:0.17, G:0.22, T:0.42
Consensus pattern (27 bp):
CATTTTACCCTATGGGGGTATTTCGGT
Found at i:26496737 original size:40 final size:40
Alignment explanation
Indices: 26496693--26496788 Score: 117
Period size: 40 Copynumber: 2.4 Consensus size: 40
26496683 CTTCGTGCCA
26496693 GTGTATCTATCGGGCTAAATGCCTAG-AAGGCTTT-GTATCG
1 GTGTATCTATCGGGCTAAATGCCTAGCAA-G-TTTCGTATCG
* * *
26496733 GTGTATCTATAGAGCTAAATGCCTAGCAAGTTTCGTGTCG
1 GTGTATCTATCGGGCTAAATGCCTAGCAAGTTTCGTATCG
26496773 GTGTA-CTTATCGGGCT
1 GTGTATC-TATCGGGCT
26496789 TAGTACCTAG
Statistics
Matches: 48, Mismatches: 5, Indels: 6
0.81 0.08 0.10
Matches are distributed among these distances:
39 4 0.08
40 42 0.88
41 2 0.04
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (40 bp):
GTGTATCTATCGGGCTAAATGCCTAGCAAGTTTCGTATCG
Found at i:26499545 original size:19 final size:19
Alignment explanation
Indices: 26499521--26499570 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
26499511 TGTATGGAGC
26499521 CACACAGCTTGGGCTCTGT
1 CACACAGCTTGGGCTCTGT
*
26499540 CACACAGCCTGGGCTCTGT
1 CACACAGCTTGGGCTCTGT
*
26499559 CACACGGCTTGG
1 CACACAGCTTGG
26499571 ACATGCAACC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.16, C:0.34, G:0.28, T:0.22
Consensus pattern (19 bp):
CACACAGCTTGGGCTCTGT
Found at i:26501306 original size:22 final size:23
Alignment explanation
Indices: 26501281--26501324 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
26501271 TTCTTAGGGT
*
26501281 TTAGGTATTAATTTA-GTTTTAA
1 TTAGGTATTAAATTAGGTTTTAA
*
26501303 TTAGGTTTTAAATTAGGTTTTA
1 TTAGGTATTAAATTAGGTTTTA
26501325 TTTTATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.55
Consensus pattern (23 bp):
TTAGGTATTAAATTAGGTTTTAA
Found at i:26501318 original size:12 final size:12
Alignment explanation
Indices: 26501281--26501324 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
26501271 TTCTTAGGGT
* *
26501281 TTAGGTATTAAT
1 TTAGGTTTTAAA
26501293 TTA-GTTTT-AA
1 TTAGGTTTTAAA
26501303 TTAGGTTTTAAA
1 TTAGGTTTTAAA
26501315 TTAGGTTTTA
1 TTAGGTTTTA
26501325 TTTTATTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 4 0.14
11 9 0.32
12 15 0.54
ACGTcount: A:0.30, C:0.00, G:0.16, T:0.55
Consensus pattern (12 bp):
TTAGGTTTTAAA
Found at i:26502712 original size:14 final size:15
Alignment explanation
Indices: 26502690--26502725 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
26502680 TACAATGATG
*
26502690 AAATAAAAAAT-TGA
1 AAATTAAAAATGTGA
26502704 AAATTAAAAATGTGA
1 AAATTAAAAATGTGA
26502719 AAATTAA
1 AAATTAA
26502726 TTCTAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 10 0.50
15 10 0.50
ACGTcount: A:0.67, C:0.00, G:0.08, T:0.25
Consensus pattern (15 bp):
AAATTAAAAATGTGA
Found at i:26502713 original size:15 final size:16
Alignment explanation
Indices: 26502693--26502725 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
26502683 AATGATGAAA
26502693 TAAAAAAT-TGAAAAT
1 TAAAAAATGTGAAAAT
26502708 T-AAAAATGTGAAAAT
1 TAAAAAATGTGAAAAT
26502723 TAA
1 TAA
26502726 TTCTAAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 3
0.84 0.00 0.16
Matches are distributed among these distances:
14 6 0.38
15 9 0.56
16 1 0.06
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (16 bp):
TAAAAAATGTGAAAAT
Found at i:26503304 original size:6 final size:6
Alignment explanation
Indices: 26503293--26503328 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
26503283 AAAAAACTCC
26503293 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
26503329 AAACTAATCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTAT
Found at i:26505498 original size:12 final size:12
Alignment explanation
Indices: 26505481--26505518 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
26505471 TCAGAGAGTT
26505481 ACACGGCCTA-GC
1 ACACGGCC-AGGC
26505493 ACACGGCCAGGC
1 ACACGGCCAGGC
26505505 ACACGGCCAGGC
1 ACACGGCCAGGC
26505517 AC
1 AC
26505519 GCGGATGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 1 0.04
12 24 0.96
ACGTcount: A:0.26, C:0.42, G:0.29, T:0.03
Consensus pattern (12 bp):
ACACGGCCAGGC
Found at i:26513029 original size:33 final size:33
Alignment explanation
Indices: 26512981--26513076 Score: 138
Period size: 33 Copynumber: 2.9 Consensus size: 33
26512971 TTTCTAGTAT
* * **
26512981 CAGTGTGGGCCTTAGCCCAATACAATATTAGAA
1 CAGTGCGGGCCTTAGCCCAATATAATAACAGAA
*
26513014 TAGTGCGGGCCTTAGCCCAATATAATAACAGAA
1 CAGTGCGGGCCTTAGCCCAATATAATAACAGAA
*
26513047 CAGTGCGAGCCTTAGCCCAATATAATAACA
1 CAGTGCGGGCCTTAGCCCAATATAATAACA
26513077 TTGTGGGTCT
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 56 1.00
ACGTcount: A:0.35, C:0.23, G:0.20, T:0.22
Consensus pattern (33 bp):
CAGTGCGGGCCTTAGCCCAATATAATAACAGAA
Found at i:26513298 original size:27 final size:28
Alignment explanation
Indices: 26513260--26513319 Score: 81
Period size: 27 Copynumber: 2.2 Consensus size: 28
26513250 AGCTATCAGT
*
26513260 ACAGT-ATATGTGGCATAGCCACCA-ATA
1 ACAGTAATATGTGGCAGAGCCACCAGA-A
26513287 ACAGTAAT-TGTGGCAGAGCCACCAGAA
1 ACAGTAATATGTGGCAGAGCCACCAGAA
26513314 ACAGTA
1 ACAGTA
26513320 CTTCCTCCAC
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 27 0.90
28 3 0.10
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (28 bp):
ACAGTAATATGTGGCAGAGCCACCAGAA
Found at i:26513538 original size:26 final size:26
Alignment explanation
Indices: 26513504--26513748 Score: 312
Period size: 26 Copynumber: 9.4 Consensus size: 26
26513494 TCCCTACGGT
*
26513504 GGTATTTCGGTAATTTGCCCATCG-G
1 GGTATTTCGGTAATTTACCCATCGAG
* * *
26513529 GGATATTTCGATAATTTACCTATCGGG
1 GG-TATTTCGGTAATTTACCCATCGAG
*
26513556 GGTATTTCAGTAATTTACCCATCGAG
1 GGTATTTCGGTAATTTACCCATCGAG
* *
26513582 GGTATTTCGGTAATTTAACCATTGAG
1 GGTATTTCGGTAATTTACCCATCGAG
*
26513608 GGTATTTCGATAATTTACCCATCGAG
1 GGTATTTCGGTAATTTACCCATCGAG
*
26513634 GGTATTTTGGTAATTTACCCATCGAG
1 GGTATTTCGGTAATTTACCCATCGAG
***
26513660 GGTATTTTTATAATTTACCCATCGAG
1 GGTATTTCGGTAATTTACCCATCGAG
* * * * *
26513686 TGTATTTTGATCATTTTCCCATCGAG
1 GGTATTTCGGTAATTTACCCATCGAG
*
26513712 GGTATTTTGGTAATTTACCCATCGAG
1 GGTATTTCGGTAATTTACCCATCGAG
26513738 GGTATTTCGGT
1 GGTATTTCGGT
26513749 CAACACAATG
Statistics
Matches: 192, Mismatches: 26, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
25 2 0.01
26 187 0.97
27 3 0.02
ACGTcount: A:0.23, C:0.16, G:0.22, T:0.39
Consensus pattern (26 bp):
GGTATTTCGGTAATTTACCCATCGAG
Found at i:26525034 original size:18 final size:18
Alignment explanation
Indices: 26525013--26525054 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
26525003 CCTTAGCTTT
26525013 GTCTTCGTCATAGTGTTC
1 GTCTTCGTCATAGTGTTC
*
26525031 GTCTTCGTTATAGTGTTC
1 GTCTTCGTCATAGTGTTC
26525049 GTCTTC
1 GTCTTC
26525055 ATCTTCGCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.10, C:0.21, G:0.21, T:0.48
Consensus pattern (18 bp):
GTCTTCGTCATAGTGTTC
Found at i:26527054 original size:50 final size:50
Alignment explanation
Indices: 26526991--26527114 Score: 140
Period size: 50 Copynumber: 2.5 Consensus size: 50
26526981 CAATCTCATA
* ** * * *
26526991 TCCCAGATATGGTCTTACATGGGAGTTCTTATATCGATGCCCATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGATGCCAACGCCATG
** * * *
26527041 TCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGATGCCAACGCCATG
*
26527091 TCCTAGACATGGTCTTACATGGGA
1 TCCCAGACATGGTCTTACATGGGA
26527115 TCTCACCCCC
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
50 60 1.00
ACGTcount: A:0.21, C:0.27, G:0.24, T:0.28
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATATCGATGCCAACGCCATG
Found at i:26530943 original size:18 final size:19
Alignment explanation
Indices: 26530908--26530944 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
26530898 CATGACATTG
26530908 AATGAAATGTATGTATACA
1 AATGAAATGTATGTATACA
26530927 AATG-AATGT-TGTGATACA
1 AATGAAATGTATGT-ATACA
26530945 TATGCTAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.18
18 10 0.59
19 4 0.24
ACGTcount: A:0.43, C:0.05, G:0.19, T:0.32
Consensus pattern (19 bp):
AATGAAATGTATGTATACA
Found at i:26531819 original size:39 final size:39
Alignment explanation
Indices: 26531765--26531844 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
26531755 ATATATGATG
26531765 TATATTTATATTCAGCTAATGATAGGTAAAATAAATTCA
1 TATATTTATATTCAGCTAATGATAGGTAAAATAAATTCA
26531804 TATATTTATATTCAGCTAATGATAGGTAAAATAAATTCA
1 TATATTTATATTCAGCTAATGATAGGTAAAATAAATTCA
26531843 TA
1 TA
26531845 CGCCTATAAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.44, C:0.07, G:0.10, T:0.39
Consensus pattern (39 bp):
TATATTTATATTCAGCTAATGATAGGTAAAATAAATTCA
Found at i:26532825 original size:16 final size:17
Alignment explanation
Indices: 26532804--26532836 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
26532794 TTGTTTTGTT
26532804 ATATGTTCTG-TATATG
1 ATATGTTCTGATATATG
*
26532820 ATATGTTTTGATATATG
1 ATATGTTCTGATATATG
26532837 CTAAAATATG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.27, C:0.03, G:0.18, T:0.52
Consensus pattern (17 bp):
ATATGTTCTGATATATG
Found at i:26533626 original size:31 final size:31
Alignment explanation
Indices: 26533590--26533654 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
26533580 ATAAAAATAT
26533590 AAATGAAATTACATTTAAATTTTTACAGAAA
1 AAATGAAATTACATTTAAATTTTTACAGAAA
26533621 AAATGAAATTACATTTAAATTTTTACAGAAA
1 AAATGAAATTACATTTAAATTTTTACAGAAA
26533652 AAA
1 AAA
26533655 AAAACTGGTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (31 bp):
AAATGAAATTACATTTAAATTTTTACAGAAA
Found at i:26542495 original size:20 final size:20
Alignment explanation
Indices: 26542467--26542504 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26542457 TATAGACTAA
26542467 AACAAAC-AACACATTTCATC
1 AACAAACAAACA-ATTTCATC
*
26542487 AACACACAAACAATTTCA
1 AACAAACAAACAATTTCA
26542505 CATTCAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.53, C:0.29, G:0.00, T:0.18
Consensus pattern (20 bp):
AACAAACAAACAATTTCATC
Found at i:26542856 original size:126 final size:127
Alignment explanation
Indices: 26542639--26542893 Score: 503
Period size: 126 Copynumber: 2.0 Consensus size: 127
26542629 CTCCCTATTT
26542639 CTCATTTCTACCCAAAAATTTTGAAAATTTCCCTATTTGCTACTTATTGCACAAAATCAACCATT
1 CTCATTTCTACCCAAAAATTTTGAAAATTTCCCTATTTGCTACTTATTGCACAAAATCAACCATT
26542704 AACTTTATAATTTAGTCCCTTTTCACTTCTAACCTAAAAATCTATCAAATTAG-CCCTAAAA
66 AACTTTATAATTTAGTCCCTTTTCACTTCTAACCTAAAAATCTATCAAATTAGTCCCTAAAA
26542765 CTCATTTCTACCCAAAAATTTTGAAAATTTCCCTATTTGCTACTTATTGCACAAAATCAACCATT
1 CTCATTTCTACCCAAAAATTTTGAAAATTTCCCTATTTGCTACTTATTGCACAAAATCAACCATT
26542830 AACTTTATAATTTAGTCCCTTTTCACTTCTAACCTAAAAATCTATCAAATTAGTCCCTAAAA
66 AACTTTATAATTTAGTCCCTTTTCACTTCTAACCTAAAAATCTATCAAATTAGTCCCTAAAA
26542892 CT
1 CT
26542894 TTAATTAATC
Statistics
Matches: 128, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
126 118 0.92
127 10 0.08
ACGTcount: A:0.35, C:0.24, G:0.04, T:0.37
Consensus pattern (127 bp):
CTCATTTCTACCCAAAAATTTTGAAAATTTCCCTATTTGCTACTTATTGCACAAAATCAACCATT
AACTTTATAATTTAGTCCCTTTTCACTTCTAACCTAAAAATCTATCAAATTAGTCCCTAAAA
Found at i:26543792 original size:3 final size:3
Alignment explanation
Indices: 26543777--26543839 Score: 117
Period size: 3 Copynumber: 21.0 Consensus size: 3
26543767 TCTAGATGAT
*
26543777 AAC AAC AAT AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
26543825 AAC AAC AAC AAC AAC
1 AAC AAC AAC AAC AAC
26543840 TATATACATG
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.67, C:0.32, G:0.00, T:0.02
Consensus pattern (3 bp):
AAC
Found at i:26549370 original size:44 final size:44
Alignment explanation
Indices: 26549322--26549443 Score: 124
Period size: 44 Copynumber: 2.8 Consensus size: 44
26549312 ATGATGCTTC
26549322 TGTCCCAGACAGGGTCTTACACGAAATCATATATTCGATGCCAA
1 TGTCCCAGACAGGGTCTTACACGAAATCATATATTCGATGCCAA
* * * *
26549366 TGTCCCAGATATGGTCTTACACATAAATC-TCA-AATCGATGCCAA
1 TGTCCCAGACAGGGTCTTACAC-GAAATCAT-ATATTCGATGCCAA
* * * *
26549410 CGTCCTAGAC-GTGGTCTTACACGATATCACATAT
1 TGTCCCAGACAG-GGTCTTACACGAAATCATATAT
26549444 CAGAATTCCA
Statistics
Matches: 61, Mismatches: 12, Indels: 10
0.73 0.14 0.12
Matches are distributed among these distances:
43 5 0.08
44 50 0.82
45 6 0.10
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.27
Consensus pattern (44 bp):
TGTCCCAGACAGGGTCTTACACGAAATCATATATTCGATGCCAA
Found at i:26553001 original size:138 final size:138
Alignment explanation
Indices: 26552752--26553166 Score: 722
Period size: 138 Copynumber: 3.0 Consensus size: 138
26552742 CTTCAAACTT
* * * * * * *
26552752 CGGATACATTTCTCGGAGGCTTCCAATCCAGTATAGCTGAAATCTTGATCGGATCAACCCGAATA
1 CGGATACATTTCTTGGAGGCTTTCAATCTAGTATA-CTAAAATATTGCTCGGATCAGCCCGAATA
* *
26552817 CCCGATGCTGATACAACATGTCCTAGAAAACTGACTTCTCGTAACCAAAACTCACATTTACTAAA
65 CCTGATGCTGATACAACATGTCCCAGAAAACTGACTTCTCGTAACCAAAACTCACATTTACTAAA
26552882 CTTCGCATA
130 CTTCGCATA
26552891 CGGATACATTTCTTGGAGGCTTTCAATCTAGTATACTAAAATATTGCTCGGATCAGCCCGAATAC
1 CGGATACATTTCTTGGAGGCTTTCAATCTAGTATACTAAAATATTGCTCGGATCAGCCCGAATAC
26552956 CTGATGCTGATACAACATGTCCCAGAAAACTGACTTCTCGTAACCAAAACTCACATTTACTAAAC
66 CTGATGCTGATACAACATGTCCCAGAAAACTGACTTCTCGTAACCAAAACTCACATTTACTAAAC
26553021 TTCGCATA
131 TTCGCATA
26553029 CGGATACATTTCTTGGAGGCTTTCAATCTAGTATACTAAAATATTGCTCGGATCAGCCCGAATAC
1 CGGATACATTTCTTGGAGGCTTTCAATCTAGTATACTAAAATATTGCTCGGATCAGCCCGAATAC
* *
26553094 CTGATGCTGATACAACATGTCCCAGAAAACTGACTTCTCGTAACCAAAACTTACATTTACTGAAC
66 CTGATGCTGATACAACATGTCCCAGAAAACTGACTTCTCGTAACCAAAACTCACATTTACTAAAC
26553159 TTCGCATA
131 TTCGCATA
26553167 TAAATGCTTA
Statistics
Matches: 265, Mismatches: 11, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
138 233 0.88
139 32 0.12
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (138 bp):
CGGATACATTTCTTGGAGGCTTTCAATCTAGTATACTAAAATATTGCTCGGATCAGCCCGAATAC
CTGATGCTGATACAACATGTCCCAGAAAACTGACTTCTCGTAACCAAAACTCACATTTACTAAAC
TTCGCATA
Found at i:26556566 original size:3 final size:3
Alignment explanation
Indices: 26556558--26556707 Score: 300
Period size: 3 Copynumber: 50.0 Consensus size: 3
26556548 TCTAGATGAT
26556558 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
26556606 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
26556654 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC
26556702 AAC AAC
1 AAC AAC
26556708 TATATACATG
Statistics
Matches: 147, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 147 1.00
ACGTcount: A:0.67, C:0.33, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:26560711 original size:44 final size:44
Alignment explanation
Indices: 26560661--26560767 Score: 119
Period size: 44 Copynumber: 2.4 Consensus size: 44
26560651 GATGCCTCTA
* * *
26560661 TCCCAGACAAGGTCTTACAC-GAAATCAT-ATATTCGATGCCAATG
1 TCCCAGACATGGTCTTACACAGAAATC-TCA-AGTCGATGCCAACG
* *
26560705 TCCCAGATATGGTCTTACACATAAATCTCAAGTCGATGCCAACG
1 TCCCAGACATGGTCTTACACAGAAATCTCAAGTCGATGCCAACG
* *
26560749 TCCTAGACGTGGTCTTACA
1 TCCCAGACATGGTCTTACA
26560768 TGATATCACA
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
44 47 0.89
45 6 0.11
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (44 bp):
TCCCAGACATGGTCTTACACAGAAATCTCAAGTCGATGCCAACG
Found at i:26562982 original size:359 final size:358
Alignment explanation
Indices: 26562306--26563029 Score: 1189
Period size: 359 Copynumber: 2.0 Consensus size: 358
26562296 ATATCAATAA
* * *
26562306 TCATATTAATATCAATTAAAACATAAATATTGTCCCTTATACGAGCTCTTGAGGCCCTAAATATG
1 TCAT-TTAATATCAATTAAAACATAAATATTCTCCCTTATACGAGCCCTTGAGGCCCTAAATATA
*
26562371 CGTTAGAAATAAGTCGAGACTAAATCAAAAACTCAGAGAATTTTTTAGAAAACAATAAAAATTGT
65 CGTTAGAAACAAGTCGAGACTAAATCAAAAACTCAGAGAATTTTTTAGAAAACAATAAAAATTGT
* * *
26562436 AAACACTGCAGTGGTCACACACCGCGTGGGCATTCGAAGTAGGAACACATGGCCATGTCCGTGCC
130 AAACACTGCAGGGGTCACACACCGCGTGGGCATTCAAAGTAGGAACACAAGGCCATGTCCGTGCC
* *
26562501 CGTATAACTCACTGACTTGGGCCACACGGCCAAGCTACATGCCCGTGTGTCAGGCCGTGTACCCT
195 CATATAACTCACTGACTTGGGCCACACGGCCAAGCCACATGCCCGTGTGTCAGGCCGTGTACCCT
*
26562566 TCAAAATAACATCACACGCCCATGTACCAGGCTATGTGCTAGGCCATGTAATAGACTAACTTGCA
260 TCAAAATAACATCACACGCCCATGTACCAGGCCATGTGCTAGGCCATGTAATAGACTAACTTGCA
*
26562631 ACCCTTTGAAAGCTACAGGGGACACACGACCGTG
325 ACCCTTTGAAAGCTACAGGGGACACACGACCATG
26562665 TCATTTAATATCAATTAAAAACATAAATATTCTCCCTTATACGAGCCCTTGAGGCCCTAAATATA
1 TCATTTAATATCAATT-AAAACATAAATATTCTCCCTTATACGAGCCCTTGAGGCCCTAAATATA
* *
26562730 CGTTAGAAACAAGTCGAGACTAAATCGAAAACTCAGAGAATTTTTTAGAAAACAATAAAAATTTT
65 CGTTAGAAACAAGTCGAGACTAAATCAAAAACTCAGAGAATTTTTTAGAAAACAATAAAAATTGT
* * * * * *
26562795 CAACACTGTAGGGGTCACACGCCGTGTGGGCATTCAAAGTAGGGACACAAGGCCATGTCTGTGCC
130 AAACACTGCAGGGGTCACACACCGCGTGGGCATTCAAAGTAGGAACACAAGGCCATGTCCGTGCC
* * *
26562860 CATGTAACTTACTGACTTGGGCCACACGGCCAAGCCACATGCCCGTGTGTTAGGCCGTGTACCCT
195 CATATAACTCACTGACTTGGGCCACACGGCCAAGCCACATGCCCGTGTGTCAGGCCGTGTACCCT
* *
26562925 TCAAAA-AAGCCTCACACGCCCATGTACCAGGCCATGTGCTAGGCCATGTAATAGACTAACTTGT
260 TCAAAATAA-CATCACACGCCCATGTACCAGGCCATGTGCTAGGCCATGTAATAGACTAACTTGC
*
26562989 AACCCTTTGAAAGCTACATGGGACACACGACCATG
324 AACCCTTTGAAAGCTACAGGGGACACACGACCATG
26563024 TCATTT
1 TCATTT
26563030 GGCCGTGTGT
Statistics
Matches: 338, Mismatches: 25, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
358 14 0.04
359 324 0.96
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (358 bp):
TCATTTAATATCAATTAAAACATAAATATTCTCCCTTATACGAGCCCTTGAGGCCCTAAATATAC
GTTAGAAACAAGTCGAGACTAAATCAAAAACTCAGAGAATTTTTTAGAAAACAATAAAAATTGTA
AACACTGCAGGGGTCACACACCGCGTGGGCATTCAAAGTAGGAACACAAGGCCATGTCCGTGCCC
ATATAACTCACTGACTTGGGCCACACGGCCAAGCCACATGCCCGTGTGTCAGGCCGTGTACCCTT
CAAAATAACATCACACGCCCATGTACCAGGCCATGTGCTAGGCCATGTAATAGACTAACTTGCAA
CCCTTTGAAAGCTACAGGGGACACACGACCATG
Found at i:26564208 original size:25 final size:25
Alignment explanation
Indices: 26564169--26564253 Score: 91
Period size: 25 Copynumber: 3.4 Consensus size: 25
26564159 TCCTGTACCT
*
26564169 GTATGCTCA-TACGAGCTATAAATCG
1 GTATGCTCACT-CGAGCTGTAAATCG
* *
26564194 GTATGCTCACTCGAGTTGTAGATCG
1 GTATGCTCACTCGAGCTGTAAATCG
** * *
26564219 GTATGCTTTCACGAGCTGTAAATTG
1 GTATGCTCACTCGAGCTGTAAATCG
26564244 GTATGCTCAC
1 GTATGCTCAC
26564254 ATGAGTTGTG
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
25 47 0.98
26 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.32
Consensus pattern (25 bp):
GTATGCTCACTCGAGCTGTAAATCG
Found at i:26564700 original size:16 final size:17
Alignment explanation
Indices: 26564679--26564710 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
26564669 CACTGTAGCC
26564679 CAAAATTAT-ATTTTGT
1 CAAAATTATCATTTTGT
26564695 CAAAATTATCATTTTG
1 CAAAATTATCATTTTG
26564711 CCCCTATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (17 bp):
CAAAATTATCATTTTGT
Found at i:26581357 original size:22 final size:21
Alignment explanation
Indices: 26581331--26581403 Score: 67
Period size: 22 Copynumber: 3.4 Consensus size: 21
26581321 GTACCTTTGC
*
26581331 AGAAGTACAATTACTTCATGGG
1 AGAAGTACAAATACTTC-TGGG
** *
26581353 AGAAGTACAGGTACCTCT-GG
1 AGAAGTACAAATACTTCTGGG
* *
26581373 TGAAGTATAAATACTTCTTGGG
1 AGAAGTACAAATACTTC-TGGG
26581395 AGAAGTACA
1 AGAAGTACA
26581404 GGTACCTCTT
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
20 14 0.36
21 2 0.05
22 23 0.59
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.26
Consensus pattern (21 bp):
AGAAGTACAAATACTTCTGGG
Found at i:26581378 original size:42 final size:42
Alignment explanation
Indices: 26581315--26581422 Score: 153
Period size: 42 Copynumber: 2.6 Consensus size: 42
26581305 TGGAACAATG
* * *
26581315 GTACAGGTACCTTTGCAGAAGTACAATTACTTCATGGGAGAA
1 GTACAGGTACCTCTGGAGAAGTACAAATACTTCATGGGAGAA
* * *
26581357 GTACAGGTACCTCTGGTGAAGTATAAATACTTCTTGGGAGAA
1 GTACAGGTACCTCTGGAGAAGTACAAATACTTCATGGGAGAA
*
26581399 GTACAGGTACCTCTTGAGAAGTAC
1 GTACAGGTACCTCTGGAGAAGTAC
26581423 CGGTGCAAGT
Statistics
Matches: 57, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 57 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (42 bp):
GTACAGGTACCTCTGGAGAAGTACAAATACTTCATGGGAGAA
Found at i:26581413 original size:22 final size:21
Alignment explanation
Indices: 26581315--26581422 Score: 87
Period size: 20 Copynumber: 5.2 Consensus size: 21
26581305 TGGAACAATG
*
26581315 GTACAGGTACCT-TTGCAGAA
1 GTACAGGTACCTCTTGGAGAA
** * *
26581335 GTACAATTACTTCATGGGAGAA
1 GTACAGGTACCTC-TTGGAGAA
*
26581357 GTACAGGTACCTC-TGGTGAA
1 GTACAGGTACCTCTTGGAGAA
* ** *
26581377 GTATAAATACTTCTTGGGAGAA
1 GTACAGGTACCTCTT-GGAGAA
26581399 GTACAGGTACCTCTT-GAGAA
1 GTACAGGTACCTCTTGGAGAA
26581419 GTAC
1 GTAC
26581423 CGGTGCAAGT
Statistics
Matches: 65, Mismatches: 19, Indels: 8
0.71 0.21 0.09
Matches are distributed among these distances:
20 32 0.49
21 1 0.02
22 32 0.49
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (21 bp):
GTACAGGTACCTCTTGGAGAA
Found at i:26584681 original size:29 final size:29
Alignment explanation
Indices: 26584599--26584720 Score: 109
Period size: 29 Copynumber: 4.2 Consensus size: 29
26584589 GTATCGATAC
** *
26584599 CCATCGAATATGAAAAGGGATGGTGACGA
1 CCATCGAATATGAAAAGGGATGGTTTCAA
* *
26584628 CCATCGAACATGAAAGGGGATGGTTTCAA
1 CCATCGAATATGAAAAGGGATGGTTTCAA
* * * *
26584657 CCCTTGAATATGAAAAGAGATGGTTTCGA
1 CCATCGAATATGAAAAGGGATGGTTTCAA
* * * * *
26584686 TCATCGATTAAAGAAAATGGATGGTTTCGA
1 CCATCGAAT-ATGAAAAGGGATGGTTTCAA
26584716 CCATC
1 CCATC
26584721 ATTTAGCACA
Statistics
Matches: 73, Mismatches: 19, Indels: 1
0.78 0.20 0.01
Matches are distributed among these distances:
29 52 0.71
30 21 0.29
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (29 bp):
CCATCGAATATGAAAAGGGATGGTTTCAA
Found at i:26593089 original size:20 final size:19
Alignment explanation
Indices: 26593058--26593110 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
26593048 GTTGGCGCGG
* *
26593058 AAATATCAATACCTTAGGA
1 AAATATCGATACCTTAAGA
26593077 AATATATCGATACCTTAAGA
1 AA-ATATCGATACCTTAAGA
26593097 AAAGTATCGATACC
1 AAA-TATCGATACC
26593111 GGATCGATAC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 3 0.10
20 27 0.90
ACGTcount: A:0.45, C:0.17, G:0.11, T:0.26
Consensus pattern (19 bp):
AAATATCGATACCTTAAGA
Found at i:26594959 original size:20 final size:21
Alignment explanation
Indices: 26594934--26594973 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
26594924 TGGAGCAAGA
26594934 ATATCGATACCTT-AGAAAAT
1 ATATCGATACCTTAAGAAAAT
26594954 ATATCGATACCTTAAGAAAA
1 ATATCGATACCTTAAGAAAA
26594974 GTATCAATAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.47, C:0.15, G:0.10, T:0.28
Consensus pattern (21 bp):
ATATCGATACCTTAAGAAAAT
Found at i:26601777 original size:23 final size:23
Alignment explanation
Indices: 26601751--26601802 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 23
26601741 TTTGATAGAT
26601751 TAAAAAAT-TAAGTGTTGAAAAAA
1 TAAAAAATATAAGTGTTG-AAAAA
26601774 TAAAAAATAAATAAGTGTTGAAAAA
1 TAAAAAAT--ATAAGTGTTGAAAAA
26601799 TAAA
1 TAAA
26601803 TATTAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 8 0.31
25 9 0.35
26 9 0.35
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.25
Consensus pattern (23 bp):
TAAAAAATATAAGTGTTGAAAAA
Found at i:26601801 original size:14 final size:14
Alignment explanation
Indices: 26601782--26601824 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
26601772 AATAAAAAAT
26601782 AAATAAGTGTTGAA
1 AAATAAGTGTTGAA
* * *
26601796 AAATAAATATTAAA
1 AAATAAGTGTTGAA
26601810 AAATTAAGTGTTGAA
1 AAA-TAAGTGTTGAA
26601825 TATAAGTTAT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 14 0.64
15 8 0.36
ACGTcount: A:0.56, C:0.00, G:0.14, T:0.30
Consensus pattern (14 bp):
AAATAAGTGTTGAA
Found at i:26601817 original size:29 final size:28
Alignment explanation
Indices: 26601749--26601824 Score: 104
Period size: 29 Copynumber: 2.8 Consensus size: 28
26601739 TCTTTGATAG
26601749 ATTAAAAAATTAAGTGTTGAAAAAATAAA
1 ATTAAAAAATTAAGTGTTG-AAAAATAAA
*
26601778 A--AATAAA-TAAGTGTTGAAAAATAAA
1 ATTAAAAAATTAAGTGTTGAAAAATAAA
26601803 TATTAAAAAATTAAGTGTTGAA
1 -ATTAAAAAATTAAGTGTTGAA
26601825 TATAAGTTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
25 9 0.22
26 10 0.24
27 5 0.12
28 5 0.12
29 12 0.29
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.29
Consensus pattern (28 bp):
ATTAAAAAATTAAGTGTTGAAAAATAAA
Found at i:26604209 original size:23 final size:23
Alignment explanation
Indices: 26604183--26604234 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 23
26604173 TTTGATAGAT
26604183 TAAAAAAT-TAAGTGTTGAAAAAA
1 TAAAAAATATAAGTGTTG-AAAAA
26604206 TAAAAAATAAATAAGTGTTGAAAAA
1 TAAAAAAT--ATAAGTGTTGAAAAA
26604231 TAAA
1 TAAA
26604235 TATTAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
23 8 0.31
25 9 0.35
26 9 0.35
ACGTcount: A:0.63, C:0.00, G:0.12, T:0.25
Consensus pattern (23 bp):
TAAAAAATATAAGTGTTGAAAAA
Found at i:26604233 original size:14 final size:14
Alignment explanation
Indices: 26604214--26604256 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
26604204 AATAAAAAAT
26604214 AAATAAGTGTTGAA
1 AAATAAGTGTTGAA
* * *
26604228 AAATAAATATTAAA
1 AAATAAGTGTTGAA
26604242 AAATTAAGTGTTGAA
1 AAA-TAAGTGTTGAA
26604257 TATAAGTTAT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
14 14 0.64
15 8 0.36
ACGTcount: A:0.56, C:0.00, G:0.14, T:0.30
Consensus pattern (14 bp):
AAATAAGTGTTGAA
Found at i:26604249 original size:29 final size:28
Alignment explanation
Indices: 26604181--26604256 Score: 104
Period size: 29 Copynumber: 2.8 Consensus size: 28
26604171 TCTTTGATAG
26604181 ATTAAAAAATTAAGTGTTGAAAAAATAAA
1 ATTAAAAAATTAAGTGTTG-AAAAATAAA
*
26604210 A--AATAAA-TAAGTGTTGAAAAATAAA
1 ATTAAAAAATTAAGTGTTGAAAAATAAA
26604235 TATTAAAAAATTAAGTGTTGAA
1 -ATTAAAAAATTAAGTGTTGAA
26604257 TATAAGTTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
25 9 0.22
26 10 0.24
27 5 0.12
28 5 0.12
29 12 0.29
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.29
Consensus pattern (28 bp):
ATTAAAAAATTAAGTGTTGAAAAATAAA
Found at i:26608694 original size:27 final size:27
Alignment explanation
Indices: 26608650--26608721 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
26608640 TTGTACATGT
26608650 ATGCTCACACAAGGTGTGAAAATGGGC
1 ATGCTCACACAAGGTGTGAAAATGGGC
* *
26608677 ATGCTCACACGAGTTGTGAAAATGGGTC
1 ATGCTCACACAAGGTGTGAAAATGGG-C
* *
26608705 -TGCTTACACAAGCTGTG
1 ATGCTCACACAAGGTGTG
26608722 GGTCGAAATG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
27 38 0.97
28 1 0.03
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (27 bp):
ATGCTCACACAAGGTGTGAAAATGGGC
Found at i:26612666 original size:27 final size:27
Alignment explanation
Indices: 26612602--26612674 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
26612592 CGATTATTGT
* *
26612602 TCGCCAAGCCTGCTGGCGAACACCAAC
1 TCGCCAAACCTACTGGCGAACACCAAC
* * *
26612629 TTGTCAGACCTACTGGC-ACACACCAAC
1 TCGCCAAACCTACTGGCGA-ACACCAAC
*
26612656 TCGCCAAACCTATTGGCGA
1 TCGCCAAACCTACTGGCGA
26612675 TCACATTTCT
Statistics
Matches: 35, Mismatches: 9, Indels: 3
0.74 0.19 0.06
Matches are distributed among these distances:
26 1 0.03
27 33 0.94
28 1 0.03
ACGTcount: A:0.27, C:0.37, G:0.19, T:0.16
Consensus pattern (27 bp):
TCGCCAAACCTACTGGCGAACACCAAC
Found at i:26613690 original size:17 final size:16
Alignment explanation
Indices: 26613652--26613694 Score: 50
Period size: 17 Copynumber: 2.6 Consensus size: 16
26613642 TGTTATAAGT
*
26613652 TAATAATTAAAATAAA
1 TAATAAATAAAATAAA
*
26613668 TGAATAAATAAAACTTAA
1 T-AATAAATAAAA-TAAA
26613686 TAATAAATA
1 TAATAAATA
26613695 TGATAAAAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 1 0.04
17 18 0.78
18 4 0.17
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (16 bp):
TAATAAATAAAATAAA
Found at i:26631597 original size:28 final size:28
Alignment explanation
Indices: 26631531--26631589 Score: 91
Period size: 28 Copynumber: 2.1 Consensus size: 28
26631521 TGATGTGTAG
**
26631531 GGTTGGTTGGGCATTGATTGCCCTTAAC
1 GGTTGGTTGGGCATTGAACGCCCTTAAC
*
26631559 GGTTGGTTGGGCATTGAACGCCTTTAAC
1 GGTTGGTTGGGCATTGAACGCCCTTAAC
26631587 GGT
1 GGT
26631590 GTTTTGGGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.15, C:0.17, G:0.34, T:0.34
Consensus pattern (28 bp):
GGTTGGTTGGGCATTGAACGCCCTTAAC
Found at i:26631748 original size:103 final size:103
Alignment explanation
Indices: 26631569--26631770 Score: 359
Period size: 103 Copynumber: 2.0 Consensus size: 103
26631559 GGTTGGTTGG
* * * *
26631569 GCATTGAACGCCTTTAACGGTGTTTTGGGATGGCCGAAGACGGTGTGTAGCGAATAGGGGTGGGA
1 GCATTGAACGCCCTTAACGGTGTGTTGGGATGGCCGAAGACGGTGTGCAGCGAATAGGGGTAGGA
26631634 ATATCTGCATCTGAATCTGACATGTTCTGTATATAAAA
66 ATATCTGCATCTGAATCTGACATGTTCTGTATATAAAA
*
26631672 GCATTGAACGCCCTTAACGGTGTGTTGGGATGGCTGAAGACGGTGTGCAGCGAATAGGGGTAGGA
1 GCATTGAACGCCCTTAACGGTGTGTTGGGATGGCCGAAGACGGTGTGCAGCGAATAGGGGTAGGA
26631737 ATATCTGCATCTGAATCTGACATGTTCTGTATAT
66 ATATCTGCATCTGAATCTGACATGTTCTGTATAT
26631771 GAAACTGAAA
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
103 94 1.00
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (103 bp):
GCATTGAACGCCCTTAACGGTGTGTTGGGATGGCCGAAGACGGTGTGCAGCGAATAGGGGTAGGA
ATATCTGCATCTGAATCTGACATGTTCTGTATATAAAA
Found at i:26633322 original size:20 final size:19
Alignment explanation
Indices: 26633276--26633315 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
26633266 TAGCGTGGCT
26633276 TTTAATAATTTTTATCAAC
1 TTTAATAATTTTTATCAAC
26633295 TTTAATAAGTTTTTAT-AAC
1 TTTAATAA-TTTTTATCAAC
26633314 TT
1 TT
26633316 ATTATAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.35, C:0.07, G:0.03, T:0.55
Consensus pattern (19 bp):
TTTAATAATTTTTATCAAC
Found at i:26633420 original size:16 final size:16
Alignment explanation
Indices: 26633399--26633440 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
26633389 TAGATGTGAT
26633399 TTTTTTAAAATAATTA
1 TTTTTTAAAATAATTA
* **
26633415 TTTTTTATAATTTTTA
1 TTTTTTAAAATAATTA
26633431 TTTTTTAAAA
1 TTTTTTAAAA
26633441 AAGTTTTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTTTTAAAATAATTA
Found at i:26633448 original size:78 final size:76
Alignment explanation
Indices: 26633366--26633518 Score: 261
Period size: 78 Copynumber: 2.0 Consensus size: 76
26633356 TTTCCATACT
26633366 TTTTATTTTGTTCAAGTTCATTCTAGATGTGATTTTTTTAAAATAATTATTTTTTATAATTTTTA
1 TTTTATTTTGTTCAAGTTCATTCTAGATGTGA-TTTTTTAAAATAATTA-TTTTTATAATTTTTA
*
26633431 TTTTTTAAAAAAG
64 TTTTTAAAAAAAG
* *
26633444 TTTTATTTTGTTTAAGTTCATTCTAGATGTGATTTTTTAAAATAATTATTTTTATGATTTTTATT
1 TTTTATTTTGTTCAAGTTCATTCTAGATGTGATTTTTTAAAATAATTATTTTTATAATTTTTATT
26633509 TTTAAAAAAA
66 TTTAAAAAAA
26633519 AATATTTATT
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
76 25 0.35
77 16 0.22
78 31 0.43
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.58
Consensus pattern (76 bp):
TTTTATTTTGTTCAAGTTCATTCTAGATGTGATTTTTTAAAATAATTATTTTTATAATTTTTATT
TTTAAAAAAAG
Found at i:26640217 original size:16 final size:16
Alignment explanation
Indices: 26640196--26640240 Score: 81
Period size: 16 Copynumber: 2.8 Consensus size: 16
26640186 TAATGTTATT
26640196 CGGGCTATGTGCCTAG
1 CGGGCTATGTGCCTAG
26640212 CGGGCTATGTGCCTAG
1 CGGGCTATGTGCCTAG
*
26640228 CGGGCTTTGTGCC
1 CGGGCTATGTGCC
26640241 AGTGATATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.09, C:0.27, G:0.38, T:0.27
Consensus pattern (16 bp):
CGGGCTATGTGCCTAG
Found at i:26640263 original size:38 final size:38
Alignment explanation
Indices: 26640219--26640424 Score: 241
Period size: 38 Copynumber: 5.4 Consensus size: 38
26640209 TAGCGGGCTA
* * *
26640219 TGTGCCTAGCGGGCTTTGTGCCAGTGATATTCGGGCTC
1 TGTGCCTAGCAGGCTTTGTGCCGGTGATATTCGAGCTC
* *
26640257 TGTGCCTAGTAGGCTTTGTGCTGGTGATATTCGAGCTC
1 TGTGCCTAGCAGGCTTTGTGCCGGTGATATTCGAGCTC
* * * * *
26640295 TGTGCCTAGCAAGCTATGTGCTGGTGATATTTGAGCTA
1 TGTGCCTAGCAGGCTTTGTGCCGGTGATATTCGAGCTC
* * * * *
26640333 TATGCCTAGCAGGCTTTGTACCAGTGTTATTCGAGCTT
1 TGTGCCTAGCAGGCTTTGTGCCGGTGATATTCGAGCTC
*
26640371 TGTGCCTAGCAGGCTTTGTGCCGGTGTTATTCGAGCTC
1 TGTGCCTAGCAGGCTTTGTGCCGGTGATATTCGAGCTC
** *
26640409 CATGCCTAGTAGGCTT
1 TGTGCCTAGCAGGCTT
26640425 CATGCCGATG
Statistics
Matches: 142, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
38 142 1.00
ACGTcount: A:0.15, C:0.21, G:0.30, T:0.34
Consensus pattern (38 bp):
TGTGCCTAGCAGGCTTTGTGCCGGTGATATTCGAGCTC
Found at i:26640806 original size:31 final size:31
Alignment explanation
Indices: 26640769--26640831 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
26640759 GAGCTAAAGT
26640769 AAGTAAATGGAAGGGTTCAAAGTCTTATAAA
1 AAGTAAATGGAAGGGTTCAAAGTCTTATAAA
26640800 AAGTAAATGGAAGGGTTCAAAGTCTTATAAA
1 AAGTAAATGGAAGGGTTCAAAGTCTTATAAA
26640831 A
1 A
26640832 TCCTATTATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.46, C:0.06, G:0.22, T:0.25
Consensus pattern (31 bp):
AAGTAAATGGAAGGGTTCAAAGTCTTATAAA
Found at i:26647244 original size:27 final size:27
Alignment explanation
Indices: 26647214--26647267 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
26647204 GTACATATAT
26647214 AAACATCCATATCAAAGCAAACTTTGA
1 AAACATCCATATCAAAGCAAACTTTGA
26647241 AAACATCCATATCAAAGCAAACTTTGA
1 AAACATCCATATCAAAGCAAACTTTGA
26647268 GAGATGATCA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.48, C:0.22, G:0.07, T:0.22
Consensus pattern (27 bp):
AAACATCCATATCAAAGCAAACTTTGA
Found at i:26647637 original size:17 final size:17
Alignment explanation
Indices: 26647615--26647652 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
26647605 CATAAAATTA
26647615 ATTTAAAAATATTTTTT
1 ATTTAAAAATATTTTTT
*
26647632 ATTT--AAGTATTTTTT
1 ATTTAAAAATATTTTTT
26647647 ATTTAA
1 ATTTAA
26647653 GTTAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 4
0.78 0.04 0.17
Matches are distributed among these distances:
15 14 0.78
17 4 0.22
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (17 bp):
ATTTAAAAATATTTTTT
Found at i:26647644 original size:15 final size:15
Alignment explanation
Indices: 26647624--26647654 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26647614 AATTTAAAAA
26647624 TATTTTTTATTTAAG
1 TATTTTTTATTTAAG
26647639 TATTTTTTATTTAAG
1 TATTTTTTATTTAAG
26647654 T
1 T
26647655 TAAATTAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (15 bp):
TATTTTTTATTTAAG
Found at i:26649432 original size:24 final size:24
Alignment explanation
Indices: 26649405--26649451 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
26649395 AATAATAAAG
* *
26649405 AAAAATTTTTAAAAATGACACTGC
1 AAAAATGTTTAAAAAAGACACTGC
26649429 AAAAATGTTTAAAAAAGACACTG
1 AAAAATGTTTAAAAAAGACACTG
26649452 ACGCAACATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.53, C:0.11, G:0.11, T:0.26
Consensus pattern (24 bp):
AAAAATGTTTAAAAAAGACACTGC
Done.