Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 80 of 145
Found at i:26651293 original size:36 final size:36
Alignment explanation
Indices: 26651253--26651328 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
26651243 AGGATGATGA
26651253 TTTCTCTTCATCTTTCCTCCTTTCTTATACTAATAT
1 TTTCTCTTCATCTTTCCTCCTTTCTTATACTAATAT
*
26651289 TTTCTCTTCATCTTTCCTCCTTTCTTGTACTAATAT
1 TTTCTCTTCATCTTTCCTCCTTTCTTATACTAATAT
26651325 TTTC
1 TTTC
26651329 GTAATAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.14, C:0.28, G:0.01, T:0.57
Consensus pattern (36 bp):
TTTCTCTTCATCTTTCCTCCTTTCTTATACTAATAT
Found at i:26651344 original size:11 final size:11
Alignment explanation
Indices: 26651330--26651368 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
26651320 AATATTTTCG
26651330 TAATAAAATAT
1 TAATAAAATAT
26651341 TAATAAAA-AT
1 TAATAAAATAT
26651351 CTAATTAAAATAT
1 -TAA-TAAAATAT
26651364 TAATA
1 TAATA
26651369 TTATAACATT
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
10 2 0.08
11 13 0.52
12 8 0.32
13 2 0.08
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.36
Consensus pattern (11 bp):
TAATAAAATAT
Found at i:26651853 original size:21 final size:21
Alignment explanation
Indices: 26651828--26651870 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
26651818 ATCTATCTCA
26651828 TATTATTTTCAACCAAGGGGT
1 TATTATTTTCAACCAAGGGGT
26651849 TATTATTTTCAACCAAGGGGT
1 TATTATTTTCAACCAAGGGGT
26651870 T
1 T
26651871 TTGGGGATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.14, G:0.19, T:0.40
Consensus pattern (21 bp):
TATTATTTTCAACCAAGGGGT
Found at i:26658318 original size:11 final size:11
Alignment explanation
Indices: 26658281--26658320 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
26658271 ATAATGCGAG
*
26658281 ATTTTTCTGTA
1 ATTTTTCTGTT
*
26658292 ATTTTTCTTTT
1 ATTTTTCTGTT
26658303 ATTTTTCTGTT
1 ATTTTTCTGTT
*
26658314 GTTTTTC
1 ATTTTTC
26658321 GGCCATATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.10, C:0.10, G:0.07, T:0.72
Consensus pattern (11 bp):
ATTTTTCTGTT
Found at i:26661027 original size:13 final size:13
Alignment explanation
Indices: 26661009--26661034 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26660999 TTGTATAAAG
26661009 GTTTGATTAATTT
1 GTTTGATTAATTT
26661022 GTTTGATTAATTT
1 GTTTGATTAATTT
26661035 TTTTTTGGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (13 bp):
GTTTGATTAATTT
Found at i:26663941 original size:41 final size:42
Alignment explanation
Indices: 26663895--26663980 Score: 115
Period size: 42 Copynumber: 2.1 Consensus size: 42
26663885 CCTGATCAGT
26663895 ATACGACACAT-AAGTGCCTGAAAT-G-ACATACGAAGTGTCTG
1 ATACGACACATGAAGTGCCTGAAATGGCACATA--AAGTGTCTG
* *
26663936 ATACGACACATGAGGTGCCTGATATGGCACATAAAGTGTCTG
1 ATACGACACATGAAGTGCCTGAAATGGCACATAAAGTGTCTG
26663978 ATA
1 ATA
26663981 TATGACACAT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
41 11 0.28
42 23 0.57
43 1 0.03
44 5 0.12
ACGTcount: A:0.35, C:0.19, G:0.23, T:0.23
Consensus pattern (42 bp):
ATACGACACATGAAGTGCCTGAAATGGCACATAAAGTGTCTG
Found at i:26663981 original size:21 final size:21
Alignment explanation
Indices: 26663899--26663995 Score: 79
Period size: 21 Copynumber: 4.6 Consensus size: 21
26663889 ATCAGTATAC
* *
26663899 GACACAT-AAGTGCCTGAAAT
1 GACACATAAAGTGTCTGATAT
* ** *
26663919 GACATACGAAGTGTCTGATAC
1 GACACATAAAGTGTCTGATAT
* * *
26663940 GACACATGAGGTGCCTGATAT
1 GACACATAAAGTGTCTGATAT
*
26663961 GGCACATAAAGTGTCTGATATAT
1 GACACATAAAGTGTCTG--ATAT
26663984 GACACATAAAGT
1 GACACATAAAGT
26663996 TCCTGAACGG
Statistics
Matches: 59, Mismatches: 15, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
20 5 0.08
21 39 0.66
23 15 0.25
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.24
Consensus pattern (21 bp):
GACACATAAAGTGTCTGATAT
Found at i:26665079 original size:30 final size:28
Alignment explanation
Indices: 26665043--26665099 Score: 87
Period size: 30 Copynumber: 2.0 Consensus size: 28
26665033 TTTATTTTAC
*
26665043 ATAATAATATAATATAATATAATATATTTT
1 ATAATAAAATAATAT-AT-TAATATATTTT
26665073 ATAATAAAATAATATATTAATATATTT
1 ATAATAAAATAATATATTAATATATTT
26665100 AAAACATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 10 0.38
29 2 0.08
30 14 0.54
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (28 bp):
ATAATAAAATAATATATTAATATATTTT
Found at i:26665084 original size:20 final size:22
Alignment explanation
Indices: 26665050--26665090 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 22
26665040 TACATAATAA
26665050 TATAATATAATATAATATATTT
1 TATAATATAATATAATATATTT
26665072 TATAATA-AA-ATAATATATT
1 TATAATATAATATAATATATT
26665091 AATATATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 10 0.53
21 2 0.11
22 7 0.37
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
TATAATATAATATAATATATTT
Found at i:26665102 original size:22 final size:22
Alignment explanation
Indices: 26665047--26665103 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 22
26665037 TTTTACATAA
*
26665047 TAATATAATATAATATAATATAT
1 TAATAT-ATATAAAATAATATAT
*
26665070 T-TTATA-ATAAAATAATATAT
1 TAATATATATAAAATAATATAT
*
26665090 TAATATATTTAAAA
1 TAATATATATAAAA
26665104 CATAAAAATC
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
20 14 0.50
21 5 0.18
22 8 0.29
23 1 0.04
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (22 bp):
TAATATATATAAAATAATATAT
Found at i:26665112 original size:30 final size:32
Alignment explanation
Indices: 26665041--26665112 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 32
26665031 TGTTTATTTT
* *
26665041 ACATAATAATATAATATAATATAATATATTTTAT
1 ACATAA-AA-ATAATATAATATAATATATTTAAA
26665075 A-AT-AAAATAATAT-AT-TAATATATTTAAA
1 ACATAAAAATAATATAATATAATATATTTAAA
26665103 ACATAAAAAT
1 ACATAAAAAT
26665113 CTAAGATTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
28 12 0.35
29 4 0.12
30 12 0.35
31 2 0.06
32 1 0.03
33 2 0.06
34 1 0.03
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (32 bp):
ACATAAAAATAATATAATATAATATATTTAAA
Found at i:26672549 original size:32 final size:32
Alignment explanation
Indices: 26672454--26672562 Score: 130
Period size: 32 Copynumber: 3.4 Consensus size: 32
26672444 CCACAGAGAA
* * *
26672454 AGGCAGCACACCACTGGTCATGCCCATTTCAC
1 AGGCGGCACACCGCTGGTCATGCCCATTCCAC
* *
26672486 AGGCGGCAC-CAGTTGAGATCATGCCCATTCCAC
1 AGGCGGCACACCGCTG-G-TCATGCCCATTCCAC
*
26672519 AGGCGGCACACCGCTGGTCAAGCCCATTCCAC
1 AGGCGGCACACCGCTGGTCATGCCCATTCCAC
*
26672551 AGGTGGCACACC
1 AGGCGGCACACC
26672563 TCTGACTTGT
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
31 3 0.05
32 34 0.52
33 24 0.37
34 4 0.06
ACGTcount: A:0.24, C:0.37, G:0.24, T:0.16
Consensus pattern (32 bp):
AGGCGGCACACCGCTGGTCATGCCCATTCCAC
Found at i:26672683 original size:3 final size:3
Alignment explanation
Indices: 26672675--26672733 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
26672665 AAATAAAATT
26672675 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
26672723 GAA GAA GAA GA
1 GAA GAA GAA GA
26672734 GAGCGGGAAG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:26673269 original size:56 final size:56
Alignment explanation
Indices: 26673209--26673318 Score: 202
Period size: 56 Copynumber: 2.0 Consensus size: 56
26673199 TAATATAAAA
26673209 TTTTTATTTTTTATGTACGTAAAAGATGAGACCATTGAGATGGAATTTGTGAATAT
1 TTTTTATTTTTTATGTACGTAAAAGATGAGACCATTGAGATGGAATTTGTGAATAT
* *
26673265 TTTTTATTTTTTATGTAGGTAAAAGATGAGACCATTGATATGGAATTTGTGAAT
1 TTTTTATTTTTTATGTACGTAAAAGATGAGACCATTGAGATGGAATTTGTGAAT
26673319 GAGACCATTG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.44
Consensus pattern (56 bp):
TTTTTATTTTTTATGTACGTAAAAGATGAGACCATTGAGATGGAATTTGTGAATAT
Found at i:26674884 original size:14 final size:14
Alignment explanation
Indices: 26674865--26674899 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
26674855 TGACATTTTT
*
26674865 TTCTAATGATACTA
1 TTCTAACGATACTA
26674879 TTCTAACGATACTA
1 TTCTAACGATACTA
26674893 TTCTAAC
1 TTCTAAC
26674900 ATGTAATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.34, C:0.20, G:0.06, T:0.40
Consensus pattern (14 bp):
TTCTAACGATACTA
Found at i:26675574 original size:6 final size:6
Alignment explanation
Indices: 26675563--26675613 Score: 66
Period size: 6 Copynumber: 8.5 Consensus size: 6
26675553 CCAGAGCTCA
* * * *
26675563 AGCCAG AGCCAG AGCTTG AGCCTG AGCCTG AGCCTG AGCCTG AGCCCG
1 AGCCTG AGCCTG AGCCTG AGCCTG AGCCTG AGCCTG AGCCTG AGCCTG
26675611 AGC
1 AGC
26675614 AGTCGCATAC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.33, T:0.12
Consensus pattern (6 bp):
AGCCTG
Found at i:26675584 original size:18 final size:18
Alignment explanation
Indices: 26675543--26675613 Score: 70
Period size: 18 Copynumber: 3.9 Consensus size: 18
26675533 GGATAGAGTC
* *
26675543 TGAGCCCGAACCAGAGCT
1 TGAGCCTGAGCCAGAGCT
** *
26675561 CAAGCCAGAGCCAGAGCT
1 TGAGCCTGAGCCAGAGCT
* *
26675579 TGAGCCTGAGCCTGAGCC
1 TGAGCCTGAGCCAGAGCT
*
26675597 TGAGCCTGAGCCCGAGC
1 TGAGCCTGAGCCAGAGC
26675614 AGTCGCATAC
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.24, C:0.34, G:0.31, T:0.11
Consensus pattern (18 bp):
TGAGCCTGAGCCAGAGCT
Found at i:26676147 original size:48 final size:48
Alignment explanation
Indices: 26676092--26676223 Score: 264
Period size: 48 Copynumber: 2.8 Consensus size: 48
26676082 AAATTAATTG
26676092 CAACATTAAAACTTGGAACAAACTTTGTAATATAAATTGAATACATTA
1 CAACATTAAAACTTGGAACAAACTTTGTAATATAAATTGAATACATTA
26676140 CAACATTAAAACTTGGAACAAACTTTGTAATATAAATTGAATACATTA
1 CAACATTAAAACTTGGAACAAACTTTGTAATATAAATTGAATACATTA
26676188 CAACATTAAAACTTGGAACAAACTTTGTAATATAAA
1 CAACATTAAAACTTGGAACAAACTTTGTAATATAAA
26676224 AACTTGGAAC
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 84 1.00
ACGTcount: A:0.48, C:0.13, G:0.08, T:0.30
Consensus pattern (48 bp):
CAACATTAAAACTTGGAACAAACTTTGTAATATAAATTGAATACATTA
Found at i:26676231 original size:27 final size:26
Alignment explanation
Indices: 26676098--26676250 Score: 119
Period size: 27 Copynumber: 6.2 Consensus size: 26
26676088 ATTGCAACAT
26676098 TAAAACTTGGAACAAACTTTGTAATA
1 TAAAACTTGGAACAAACTTTGTAATA
* * ** *
26676124 T-AAA-TT-G-A-ATACATTACAACA
1 TAAAACTTGGAACAAACTTTGTAATA
26676145 TTAAAACTTGGAACAAACTTTGTAATA
1 -TAAAACTTGGAACAAACTTTGTAATA
* * ** *
26676172 T-AAA-TT-G-A-ATACATTACAACA
1 TAAAACTTGGAACAAACTTTGTAATA
26676193 TTAAAACTTGGAACAAACTTTGTAATA
1 -TAAAACTTGGAACAAACTTTGTAATA
26676220 TAAAAACTTGGAACAAACTTTGTAATA
1 T-AAAACTTGGAACAAACTTTGTAATA
26676247 TAAA
1 TAAA
26676251 TTAAATACAT
Statistics
Matches: 94, Mismatches: 20, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
21 16 0.17
22 4 0.04
23 8 0.09
24 8 0.09
25 8 0.09
26 8 0.09
27 42 0.45
ACGTcount: A:0.48, C:0.12, G:0.09, T:0.31
Consensus pattern (26 bp):
TAAAACTTGGAACAAACTTTGTAATA
Found at i:26676270 original size:75 final size:73
Alignment explanation
Indices: 26676147--26676297 Score: 275
Period size: 75 Copynumber: 2.0 Consensus size: 73
26676137 TTACAACATT
*
26676147 AAAACTTGGAACAAACTTTGTAATATAAATTGAATACATTACAACATTAAAACTTGGAACAAACT
1 AAAACTTGGAACAAACTTTGTAATATAAATTAAATACATTACAACATT-AAACTTGGAACAAACT
26676212 TTGTAATATA
65 TTGTAATA-A
26676222 AAAACTTGGAACAAACTTTGTAATATAAATTAAATACATTACAACATTAAACTTGGAACAAACTT
1 AAAACTTGGAACAAACTTTGTAATATAAATTAAATACATTACAACATTAAACTTGGAACAAACTT
26676287 TGTAATAA
66 TGTAATAA
26676295 AAA
1 AAA
26676298 TTAGGTACAT
Statistics
Matches: 75, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
73 4 0.05
74 24 0.32
75 47 0.63
ACGTcount: A:0.50, C:0.12, G:0.09, T:0.30
Consensus pattern (73 bp):
AAAACTTGGAACAAACTTTGTAATATAAATTAAATACATTACAACATTAAACTTGGAACAAACTT
TGTAATAA
Found at i:26684627 original size:18 final size:18
Alignment explanation
Indices: 26684593--26684627 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
26684583 AAAAAATCAA
*
26684593 TCAAAAAATCAAAAAAAT
1 TCAAAAAATAAAAAAAAT
26684611 TCAAAAAATAAAAAAAA
1 TCAAAAAATAAAAAAAA
26684628 AGGAAAATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.77, C:0.09, G:0.00, T:0.14
Consensus pattern (18 bp):
TCAAAAAATAAAAAAAAT
Found at i:26687912 original size:88 final size:88
Alignment explanation
Indices: 26686757--26687890 Score: 1675
Period size: 88 Copynumber: 12.9 Consensus size: 88
26686747 ATCAGTAAAA
* *
26686757 ATAGTAGATCTTGCCTTCCTGCATCGATAGTGAAGCAGATC-AAGAACACAAGCCTTGCCTCCCT
1 ATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAG-ACACAAGCCTTGCCTCCCT
26686821 CGGTTGTAGTGGAGCAGGTTGAAG
65 CGGTTGTAGTGGAGCAGGTTGAAG
* * * * *
26686845 ATAGCAGATCTTACCTTCCTACATCGAGAGTGAAGCAGATCGAAAACACAAGCCTTGGCC-CCGT
1 ATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTT-GCCTCCCT
*
26686909 CGGTTGTAGTGGATCAGGTTGAAG
65 CGGTTGTAGTGGAGCAGGTTGAAG
* * * * *
26686933 ATAACAAATCTTGCCTTCCTGCATCGATAGTGAAGCAAATCGAAAACACAAGCCTTGCCTCCCTC
1 ATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTC
*
26686998 AGTTGTAGTGGAGCAGGTTGAAG
66 GGTTGTAGTGGAGCAGGTTGAAG
* * * *
26687021 ATAGTAGATCTTGCCTTCTTGTATCGACAGTGAAGTAGATCGAAGACACAAGCCTTGCCTCCCTC
1 ATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTC
*
26687086 GGTTGTAGTGGAGTAGGTTGAAG
66 GGTTGTAGTGGAGCAGGTTGAAG
* *
26687109 ATAGCAGATCTTGCCTTCCTGCATCGATAGTGAAGCAGATCGAAAACACAAGCCTTGCCTCCCTC
1 ATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTC
*
26687174 GGTTGTAGTGCAGCAGGTTGAAG
66 GGTTGTAGTGGAGCAGGTTGAAG
* * * * **
26687197 ATAGCAGATCTTACATTCCTGCATCGATAGTGAAGCAGATCGAAAACACAAGCCTTGCCTCTATC
1 ATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTC
*
26687262 GGTTGTAGTGGAACAGGTTGAAG
66 GGTTGTAGTGGAGCAGGTTGAAG
*
26687285 ATAGCAGATCTTGCCTTCCTGCATCGAC-GATGAAGCAGATCGAAGACATAAGCCTTGCCTCCCT
1 ATAGCAGATCTTGCCTTCCTGCATCGACAG-TGAAGCAGATCGAAGACACAAGCCTTGCCTCCCT
26687349 CGGTTGTAGTGGAGCAGGTTGAAG
65 CGGTTGTAGTGGAGCAGGTTGAAG
* * ** * *
26687373 ATAGCAGATCCTGCCTTCCTGCATCGATAGTGAAGCAGATAAAAAACACAAGCCTTACCTCCCTC
1 ATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTC
26687438 GGTTGTAGTGGAGCAGGTTGAAG
66 GGTTGTAGTGGAGCAGGTTGAAG
* *
26687461 ATAGCAGATCTTGCCTTCTTGCATCGAC-GACGAAGCAGATCGAAGACACAAGCCTTGCCTCCCT
1 ATAGCAGATCTTGCCTTCCTGCATCGACAG-TGAAGCAGATCGAAGACACAAGCCTTGCCTCCCT
26687525 CGGTTGTAGTGGAGCAGGTTGAAG
65 CGGTTGTAGTGGAGCAGGTTGAAG
*
26687549 ATAGCAGATCTTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTC
1 ATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTC
26687614 GGTTGTAGTGGAGCAGGTTGAAG
66 GGTTGTAGTGGAGCAGGTTGAAG
* * * *
26687637 ATAACAGATCTTGCCTTCCTGCATCAATAGTGAAGCAGATTGAAGACACAAGCCTTGCCTCCCTC
1 ATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTC
*
26687702 TGTTGTAGTGGAGCAGGTTGAAG
66 GGTTGTAGTGGAGCAGGTTGAAG
* * * *
26687725 ATAGCAGATCTTACCTTCCTGCATCGACGGCGAAGCAGATCGAAGACACAAGCCTTGTCTCCCTC
1 ATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTC
* *
26687790 GGTTATAGTGGAGCAGGTTGAAA
66 GGTTGTAGTGGAGCAGGTTGAAG
* * * *
26687813 ATAGCAGATCTTGCATTCCTGCATCAACAATGAAGCAGATCGAA-ACCACAAGCCTTGCTTCCCT
1 ATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGA-CACAAGCCTTGCCTCCCT
** *
26687877 AAGTAGTAGTGGAG
65 CGGTTGTAGTGGAG
26687891 TAGATCGAAG
Statistics
Matches: 944, Mismatches: 94, Indels: 16
0.90 0.09 0.02
Matches are distributed among these distances:
87 6 0.01
88 931 0.99
89 7 0.01
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (88 bp):
ATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTC
GGTTGTAGTGGAGCAGGTTGAAG
Found at i:26688147 original size:44 final size:43
Alignment explanation
Indices: 26688116--26688198 Score: 130
Period size: 44 Copynumber: 1.9 Consensus size: 43
26688106 TAGTTTGGAA
*
26688116 ATAACGGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAGG
1 ATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAA-G
**
26688160 ATGGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
1 ATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
26688199 TGTAGCCAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.24
Consensus pattern (43 bp):
ATAACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAG
Found at i:26688188 original size:131 final size:129
Alignment explanation
Indices: 26687872--26688199 Score: 421
Period size: 131 Copynumber: 2.5 Consensus size: 129
26687862 AAGCCTTGCT
* * *
26687872 TCCCTAAGTAGTAGTGGAGTAGATCGAAGACGGCGAATCTTATCT-TCAAGAGTAGGGAAGCAGA
1 TCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCCAAGAGTAGGGAAGCAGA
* * * *
26687936 TTTAAGCCGCAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATTACAGATCTTGTC
66 TTTAAACCACAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATAACAGATCTTATC
* * * * *
26688000 CCCCTAAGCAGTAGCGAAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAGGAGTAGGGAAGTA
1 TCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATC-T-CCCAAGAGTAGGGAAGCA
* * *
26688065 GATTTAAACCACAAGTCCTATCTCCCTGGTCAGCAGTGGAGTAGTTTGGAAATAACGGATCTTAT
64 GATTTAAACCACAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATAACAGATCTTAT
26688130 C
129 C
*
26688131 TCCCTAAGCAGTAGTGGAGCAGATC-AAGGATGGC-AGATCTTATCTCCCTAAGCAGTAGTGG-A
1 TCCCTAAGCAGTAGTGGAGCAGATCGAA-GACGGCGA-ATCTTATCTCCC-AAG-AGTAG-GGAA
26688193 GCAGATT
61 GCAGATT
26688200 GTAGCCAGTA
Statistics
Matches: 171, Mismatches: 21, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
128 39 0.23
129 4 0.02
130 6 0.04
131 120 0.70
132 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (129 bp):
TCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTCCCAAGAGTAGGGAAGCAGA
TTTAAACCACAAGTCCTATCTCCCTGGTCAGCAGTGGAATAGGTTGGAAATAACAGATCTTATC
Found at i:26688568 original size:44 final size:44
Alignment explanation
Indices: 26688505--26688617 Score: 158
Period size: 44 Copynumber: 2.6 Consensus size: 44
26688495 GAGACACAAA
* *
26688505 TCCTAT-CTCCCTGATATTGCAGTGGAGTGGATCAAAGTACCAAT
1 TCCTATAC-CCCTAATATTGCAGTGGAGTGGATCAAAGCACCAAT
*
26688549 TCCTATACCCCTAATATTGCAGTAGAGTGGATCAAAGCACCAAT
1 TCCTATACCCCTAATATTGCAGTGGAGTGGATCAAAGCACCAAT
*
26688593 TCCTATACCCCTGAAGA-TGCAGTGG
1 TCCTATACCCCT-AATATTGCAGTGG
26688618 GTTAGAATGA
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
44 58 0.94
45 4 0.06
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (44 bp):
TCCTATACCCCTAATATTGCAGTGGAGTGGATCAAAGCACCAAT
Found at i:26690051 original size:20 final size:21
Alignment explanation
Indices: 26690028--26690068 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
26690018 TCCCGTATGT
26690028 ATTTATATAT-ATTATATTAA
1 ATTTATATATGATTATATTAA
* *
26690048 ATTTGTATATGATTATTTTAA
1 ATTTATATATGATTATATTAA
26690069 CTTGCTTTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (21 bp):
ATTTATATATGATTATATTAA
Found at i:26690101 original size:25 final size:26
Alignment explanation
Indices: 26690059--26690146 Score: 85
Period size: 25 Copynumber: 3.4 Consensus size: 26
26690049 TTTGTATATG
* *
26690059 ATTATTTTAACTTGCTTTCTA-G-ATT
1 ATTATTTTAAGTTACTTT-TACGTATT
*
26690084 ATTATTTTAAGTTACTTTATATGTCATT
1 ATTATTTTAAGTTACTTT-TACGT-ATT
26690112 -TTATTTTAAGTTA-TTTTACGTATT
1 ATTATTTTAAGTTACTTTTACGTATT
26690136 ATTTATTTTAA
1 A-TTATTTTAA
26690147 AATTAACCTA
Statistics
Matches: 54, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
24 3 0.06
25 22 0.41
26 13 0.24
27 13 0.24
28 3 0.06
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.59
Consensus pattern (26 bp):
ATTATTTTAAGTTACTTTTACGTATT
Found at i:26690139 original size:27 final size:26
Alignment explanation
Indices: 26690085--26690146 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 26
26690075 TTCTAGATTA
26690085 TTATTTTAAGTTACTTTATATGTCATT
1 TTATTTTAAGTTACTTTATATGTCA-T
*
26690112 TTATTTTAAGTTATTTTACGTAT-T-AT
1 TTATTTTAAGTTACTTTA--TATGTCAT
26690138 TTATTTTAA
1 TTATTTTAA
26690147 AATTAACCTA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
26 10 0.31
27 18 0.56
28 1 0.03
29 3 0.09
ACGTcount: A:0.27, C:0.05, G:0.06, T:0.61
Consensus pattern (26 bp):
TTATTTTAAGTTACTTTATATGTCAT
Found at i:26694631 original size:31 final size:31
Alignment explanation
Indices: 26694552--26694639 Score: 97
Period size: 31 Copynumber: 2.8 Consensus size: 31
26694542 AAGGGCCTAT
* * *
26694552 CATTTACATAAAGTGCTC-AATGAGGGCCAAA
1 CATTTTCA-AAAGTGCTCAAATAAGGGCAAAA
* * * *
26694583 CCTTTTCGAAAGCGCTCAAATAAGGGTAAAA
1 CATTTTCAAAAGTGCTCAAATAAGGGCAAAA
26694614 CATTTTCAAAAGTGCTCAAATAAGGG
1 CATTTTCAAAAGTGCTCAAATAAGGG
26694640 ATTTTTGAAT
Statistics
Matches: 46, Mismatches: 10, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
30 8 0.17
31 38 0.83
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.24
Consensus pattern (31 bp):
CATTTTCAAAAGTGCTCAAATAAGGGCAAAA
Found at i:26695441 original size:5 final size:5
Alignment explanation
Indices: 26695431--26695456 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
26695421 TGAGCATTCG
26695431 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
26695457 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:26708197 original size:146 final size:145
Alignment explanation
Indices: 26708027--26708332 Score: 468
Period size: 146 Copynumber: 2.1 Consensus size: 145
26708017 TCAAAATTTT
* *
26708027 CTTTTAAAAAATATCACTACTTTTCTTAAAAATCAAAATTTTATTTCGAAATAGTTGAAAAAGAT
1 CTTTTAAAAAA-AACACTACTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAGAT
* * *
26708092 CAAAACTTTGTTTTAAAAATTTTAAACTTTTTCTTTAAAATGACCAAAAAACATATTTTTATTTT
65 CAAAACTTTGCTTTAAAAA-TTTAAACTTTTCCTTTAAAATGACCAAAAAACAGATTTTTATTTT
*
26708157 AAAAATCTAAACGTTCG
129 AAAAATATAAACGTTCG
*
26708174 CTTTTAAAAAAAACACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAGATC
1 CTTTTAAAAAAAACACTACTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAGATC
* * * *
26708239 AAAACTTTGCTTTAAGAATTTAAACTTTTCCTTTAATATGACTAAAAAATAGATTTTTATTTTAA
66 AAAACTTTGCTTTAAAAATTTAAACTTTTCCTTTAAAATGACCAAAAAACAGATTTTTATTTTAA
* *
26708304 AAATATAAACTTTCT
131 AAATATAAACGTTCG
26708319 CTTTTTAAAAAAAA
1 C-TTTTAAAAAAAA
26708333 TTAAAACTTT
Statistics
Matches: 145, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
145 55 0.38
146 79 0.54
147 11 0.08
ACGTcount: A:0.44, C:0.11, G:0.05, T:0.40
Consensus pattern (145 bp):
CTTTTAAAAAAAACACTACTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAGATC
AAAACTTTGCTTTAAAAATTTAAACTTTTCCTTTAAAATGACCAAAAAACAGATTTTTATTTTAA
AAATATAAACGTTCG
Found at i:26708253 original size:73 final size:74
Alignment explanation
Indices: 26708016--26708251 Score: 190
Period size: 74 Copynumber: 3.2 Consensus size: 74
26708006 TTTTTACAAA
* * * *
26708016 ATCAAAA-TTTTCTTTTAAAAAATATCACTACTTTTCTTAAAAATCAAAATTTTATTTCGAAATA
1 ATCAAAACTTTGCTTTTAAAAAA-AACACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATA
26708080 GTTGAAAAAG
65 GTTGAAAAAG
* * *
26708090 ATCAAAACTTTG-TTTTAAAAATTTTAA-AC--TTTTTCTTTAAAATGACCAAAAAAC-ATATTT
1 ATCAAAACTTTGCTTTTAAAAA---AAACACTATTTTTC-TTAAAA--ATC--AAAACTTTATTT
* **
26708150 ----TTA-TTTTAAAA-
58 CGAAATAGTTGAAAAAG
* *
26708161 ATCTAAACGTTCGCTTTTAAAAAAAACACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATA
1 ATCAAAAC-TTTGCTTTTAAAAAAAACACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATA
26708226 GTTGAAAAAG
65 GTTGAAAAAG
26708236 ATCAAAACTTTGCTTT
1 ATCAAAACTTTGCTTT
26708252 AAGAATTTAA
Statistics
Matches: 121, Mismatches: 20, Indels: 42
0.66 0.11 0.23
Matches are distributed among these distances:
68 5 0.04
69 5 0.04
70 4 0.03
71 9 0.07
72 15 0.12
73 24 0.20
74 35 0.29
75 12 0.10
76 3 0.02
77 5 0.04
78 4 0.03
ACGTcount: A:0.43, C:0.12, G:0.06, T:0.39
Consensus pattern (74 bp):
ATCAAAACTTTGCTTTTAAAAAAAACACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAG
TTGAAAAAG
Found at i:26710987 original size:22 final size:22
Alignment explanation
Indices: 26710962--26711018 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
26710952 AAAATAGTTG
26710962 AAAAAGATTAAAACTTTAT-TTT
1 AAAAAGATTAAAA-TTTATCTTT
*
26710984 AAAAA-ATTTAAAATTTTTCTTT
1 AAAAAGA-TTAAAATTTATCTTT
* *
26711006 AAAATGACTAAAA
1 AAAAAGATTAAAA
26711019 AACATATTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 5 0.17
22 23 0.79
23 1 0.03
ACGTcount: A:0.53, C:0.05, G:0.04, T:0.39
Consensus pattern (22 bp):
AAAAAGATTAAAATTTATCTTT
Found at i:26711130 original size:73 final size:71
Alignment explanation
Indices: 26710905--26711130 Score: 167
Period size: 73 Copynumber: 3.1 Consensus size: 71
26710895 AAAATCAAAG
* * * *
26710905 TTTTTTTAAAAAATCGCTACTTTTCTTAAAAATTAAAATTTTATTTCAAAATAGTTGAAAAAGAT
1 TTTTTTTAAAAAATCACTATTTTTCTTAAAAATAAAAACTTTATTTC-AAATAGTTGAAAAAGAT
*
26710970 TAAAACT
65 CAAAACT
* * ** * * **
26710977 TTATTTTAAAAAATTTAAAATTTTTCTTTAAAATGACTAAAAAAC-ATATTT---TTA-TTTTAA
1 TTTTTTTAAAAAA-TCACTATTTTTC-TTAAAA--A-T-AAAAACTTTATTTCAAATAGTTGAAA
*
26711037 AA-ATCTAAACTT
60 AAGATCAAAAC-T
*
26711049 TCTCTTTTTAAAAAATCACTATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAGTTGAAAAAG
1 T-T-TTTTTAAAAAATCACTATTTTTCTTAAAAATAAAAACTTTATTTC-AAATAGTTGAAAAAG
26711114 ATCAAAACT
63 ATCAAAACT
26711123 TTGTTTTT
1 TT-TTTTT
26711131 GTTATAAAAT
Statistics
Matches: 113, Mismatches: 25, Indels: 31
0.67 0.15 0.18
Matches are distributed among these distances:
68 5 0.04
69 6 0.05
70 1 0.01
71 6 0.05
72 26 0.23
73 27 0.24
74 24 0.21
75 7 0.06
76 1 0.01
77 6 0.05
78 4 0.04
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.43
Consensus pattern (71 bp):
TTTTTTTAAAAAATCACTATTTTTCTTAAAAATAAAAACTTTATTTCAAATAGTTGAAAAAGATC
AAAACT
Found at i:26712648 original size:30 final size:29
Alignment explanation
Indices: 26712612--26712670 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
26712602 ACTTAACAAG
26712612 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAAT-ATAACAAAATTAA
* *
26712642 CAAATGCCTTTAAAATATAATAAAATTAA
1 CAAATGCCTCTAAAATATAACAAAATTAA
26712671 TAATAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.56, C:0.14, G:0.03, T:0.27
Consensus pattern (29 bp):
CAAATGCCTCTAAAATATAACAAAATTAA
Found at i:26712898 original size:30 final size:29
Alignment explanation
Indices: 26712864--26712922 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
26712854 ACTTAACAAG
26712864 CAAATGCCTCTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAAT-ATAACAAAATTAA
* *
26712894 CAAATGCCTTTAAAATATAATAAAATTAA
1 CAAATGCCTCTAAAATATAACAAAATTAA
26712923 TAATAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 12 0.44
30 15 0.56
ACGTcount: A:0.56, C:0.14, G:0.03, T:0.27
Consensus pattern (29 bp):
CAAATGCCTCTAAAATATAACAAAATTAA
Found at i:26712937 original size:252 final size:250
Alignment explanation
Indices: 26712494--26712989 Score: 920
Period size: 252 Copynumber: 2.0 Consensus size: 250
26712484 ATTTTAAAAA
* * *
26712494 ATATATAATACATCAAAAATACTAAAAATATCAAAATAAATATTTCCTAACAAATTGAAAATAAA
1 ATATATAATACATCAAAAATACTAAAAACATCAAAATAAATATTTCCCAACAAATTAAAAATAAA
* *
26712559 TTTTAAAAAATATGTATACTTAAATAACACTAAGATAGATGCAACTTAACAAGCAAATGCCTCTA
66 TTTTAAAAAATATGTAGACTTAAATAACACTAAGATAAATGCAACTTAACAAGCAAATGCCTCTA
26712624 AAATAATAACAAAATTAACAAATGCCTTTAAAATATAATAAAATTAATAATAAAATAAATTTTAT
131 AAATAATAACAAAATTAACAAATGCCTTTAAAATATAATAAAATTAATAATAAAATAAATTTTAT
26712689 ACAATATCCAAACAATAACAACACAATAATAGCAATATAATAGTAAAATTTAAAT
196 ACAATATCCAAACAATAACAACACAATAATAGCAATATAATAGTAAAATTTAAAT
26712744 ATATATAATACATCAAAAATACTAAAAACATCAAAATAAATATTTCCCAACAAATTAAAAATAAA
1 ATATATAATACATCAAAAATACTAAAAACATCAAAATAAATATTTCCCAACAAATTAAAAATAAA
*
26712809 TTTTTTAAAAAATATGTAGACTTAAATAACACTAAGATAAATGTAACTTAACAAGCAAATGCCTC
66 --TTTTAAAAAATATGTAGACTTAAATAACACTAAGATAAATGCAACTTAACAAGCAAATGCCTC
26712874 TAAAATAATAACAAAATTAACAAATGCCTTTAAAATATAATAAAATTAATAATAAAATAAATTTT
129 TAAAATAATAACAAAATTAACAAATGCCTTTAAAATATAATAAAATTAATAATAAAATAAATTTT
26712939 ATACAATATCCAAACAATAACAACACAATAATAGCAATATAATAGTAAAAT
194 ATACAATATCCAAACAATAACAACACAATAATAGCAATATAATAGTAAAAT
26712990 GGTAGCAAAA
Statistics
Matches: 238, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
250 62 0.26
252 176 0.74
ACGTcount: A:0.56, C:0.12, G:0.04, T:0.28
Consensus pattern (250 bp):
ATATATAATACATCAAAAATACTAAAAACATCAAAATAAATATTTCCCAACAAATTAAAAATAAA
TTTTAAAAAATATGTAGACTTAAATAACACTAAGATAAATGCAACTTAACAAGCAAATGCCTCTA
AAATAATAACAAAATTAACAAATGCCTTTAAAATATAATAAAATTAATAATAAAATAAATTTTAT
ACAATATCCAAACAATAACAACACAATAATAGCAATATAATAGTAAAATTTAAAT
Found at i:26717307 original size:42 final size:42
Alignment explanation
Indices: 26717260--26717730 Score: 667
Period size: 42 Copynumber: 11.3 Consensus size: 42
26717250 CTTCGTATAC
* *
26717260 AATGCAATGAAAAGTAAATGGACATCCACACCTGGGCCTTTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* *
26717302 AATGCAATGAAAAGTAAACGGACCTCCACACCTGGGCCTTTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * * *
26717344 GATGTAAGGAAAAGTCAATGGACCTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* *
26717386 AATGCAATGAAAAGTAAATGGACCTCCACACCCGGGCCTATA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * * *
26717428 AATGCAATGGAAAG-AAATGGAACTCTACACCTAGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
*
26717469 AATGCAATAAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
*
26717511 AATGCAATGAAAAGTAAATGGACCTCCATACCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * *
26717553 AATGTAAT-AAAAGTAAATGGACCTCTACGCCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* *
26717594 AATGCAATGAAAAGTAAATAGACCTCCACACCTAGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * * **
26717636 AATGTAATAAAAAGTAAATGGACTTCCACTTCTGGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * *
26717678 AATGTAATGAAAAGTAAATGAACCTCCACACCTAGGCCTCTA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
26717720 AATGCAATGAA
1 AATGCAATGAA
26717731 TGTTTTCCTT
Statistics
Matches: 377, Mismatches: 50, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
41 71 0.19
42 306 0.81
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (42 bp):
AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
Found at i:26717495 original size:167 final size:168
Alignment explanation
Indices: 26717255--26717730 Score: 688
Period size: 167 Copynumber: 2.8 Consensus size: 168
26717245 TGTGCCTTCG
* * *
26717255 TATACAATGCAATGAAAAGTAAATGG-ACATCCACACCTGGGCCTTTAAATGCAATGAAAAGTAA
1 TATA-AATGCAATGAAAAGTAAATGGAAC-TCCACACCTAGGCCTCTAAATGCAATAAAAAGTAA
* * * * *
26717319 ACGGACCTCCACACCTGGGCCTTTAGATGTAAGGAAAAGTCAATGGACCTCCACACCTGGGCCTC
64 ATGGACCTCCACACCTGGGCCTCTAAATGTAATGAAAAGTAAATGGACCTCCACACCTGGGCCTC
26717384 TAAATGCAATGAAAAGTAAATGGACCTCCACACCCGGGCC
129 TAAATGCAATGAAAAGTAAATGGACCTCCACACCCGGGCC
* *
26717424 TATAAATGCAATGGAAAG-AAATGGAACTCTACACCTAGGCCTCTAAATGCAATAAAAAGTAAAT
1 TATAAATGCAATGAAAAGTAAATGGAACTCCACACCTAGGCCTCTAAATGCAATAAAAAGTAAAT
* *
26717488 GGACCTCCACACCTGGGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCATACCTGGGCCTCTA
66 GGACCTCCACACCTGGGCCTCTAAATGTAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * * *
26717553 AATGTAAT-AAAAGTAAATGGACCTCTACGCCTGGGCC
131 AATGCAATGAAAAGTAAATGGACCTCCACACCCGGGCC
* * * *
26717590 TCTAAATGCAATGAAAAGTAAATAGACCTCCACACCTAGGCCTCTAAATGTAATAAAAAGTAAAT
1 TATAAATGCAATGAAAAGTAAATGGAACTCCACACCTAGGCCTCTAAATGCAATAAAAAGTAAAT
* ** * *
26717655 GGACTTCCACTTCTGGGCCTCTAAATGTAATGAAAAGTAAATGAACCTCCACACCTAGGCCTCTA
66 GGACCTCCACACCTGGGCCTCTAAATGTAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
26717720 AATGCAATGAA
131 AATGCAATGAA
26717731 TGTTTTCCTT
Statistics
Matches: 274, Mismatches: 30, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
166 42 0.15
167 211 0.77
168 17 0.06
169 4 0.01
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (168 bp):
TATAAATGCAATGAAAAGTAAATGGAACTCCACACCTAGGCCTCTAAATGCAATAAAAAGTAAAT
GGACCTCCACACCTGGGCCTCTAAATGTAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
AATGCAATGAAAAGTAAATGGACCTCCACACCCGGGCC
Found at i:26717515 original size:125 final size:126
Alignment explanation
Indices: 26717260--26717730 Score: 651
Period size: 125 Copynumber: 3.8 Consensus size: 126
26717250 CTTCGTATAC
* * * *
26717260 AATGCAATGAAAAGTAAATGGACATCCACACCTGGGCCTTTAAATGCAATGAAAAGTAAACGGAC
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAATGAAAAGTAAATGGAA
* * * * * *
26717325 CTCCACACCTGGGCCTTTAGATGTAAGGAAAAGTCAATGGACCTCCACACCTGGGCCTCTA
66 CTCCACACCTAGGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * *
26717386 AATGCAATGAAAAGTAAATGGACCTCCACACCCGGGCCTATAAATGCAATGGAAAG-AAATGGAA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAATGAAAAGTAAATGGAA
* *
26717450 CTCTACACCTAGGCCTCTAAATGCAATAAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
66 CTCCACACCTAGGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * *
26717511 AATGCAATGAAAAGTAAATGGACCTCCATACCTGGGCCTCTAAATGTAAT-AAAAGTAAATGGAC
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAATGAAAAGTAAATGGAA
* * * * *
26717575 CTCTACGCCTGGGCCTCTAAATGCAATGAAAAGTAAATAGACCTCCACACCTAGGCCTCTA
66 CTCCACACCTAGGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
* * * ** *
26717636 AATGTAATAAAAAGTAAATGGACTTCCACTTCTGGGCCTCTAAATGTAATGAAAAGTAAAT-GAA
1 AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAATGAAAAGTAAATGGAA
26717700 CCTCCACACCTAGGCCTCTAAATGCAATGAA
66 -CTCCACACCTAGGCCTCTAAATGCAATGAA
26717731 TGTTTTCCTT
Statistics
Matches: 307, Mismatches: 35, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
124 4 0.01
125 214 0.70
126 89 0.29
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (126 bp):
AATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAATGAAAAGTAAATGGAA
CTCCACACCTAGGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTA
Found at i:26718176 original size:20 final size:20
Alignment explanation
Indices: 26718128--26718177 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
26718118 TTGCTCTCTC
26718128 TCTTTATTTTTTAGTTTCTTT
1 TCTTT-TTTTTTAGTTTCTTT
*
26718149 T-TTGTTTTATTAGTTT-TTT
1 TCTT-TTTTTTTAGTTTCTTT
26718168 TCTTTTTTTT
1 TCTTTTTTTT
26718178 CTTGATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 9 0.36
20 14 0.56
21 2 0.08
ACGTcount: A:0.08, C:0.06, G:0.06, T:0.80
Consensus pattern (20 bp):
TCTTTTTTTTTAGTTTCTTT
Found at i:26722730 original size:4 final size:4
Alignment explanation
Indices: 26722707--26722747 Score: 55
Period size: 4 Copynumber: 10.2 Consensus size: 4
26722697 TGAATAAACA
* * *
26722707 AATG AGTG AATG AGTG AATG AATG GATG AATG AATG AATG A
1 AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG A
26722748 TTGATTGATT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.44, C:0.00, G:0.32, T:0.24
Consensus pattern (4 bp):
AATG
Found at i:26725331 original size:18 final size:18
Alignment explanation
Indices: 26725308--26725348 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
26725298 CTATATCCAT
26725308 CTTAACCATGGAGT-TGTC
1 CTTAACCATGGAGTAT-TC
26725326 CTTAACCATGGAGTATTC
1 CTTAACCATGGAGTATTC
26725344 CTTAA
1 CTTAA
26725349 ACTTATGCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 21 0.95
19 1 0.05
ACGTcount: A:0.27, C:0.22, G:0.17, T:0.34
Consensus pattern (18 bp):
CTTAACCATGGAGTATTC
Found at i:26726767 original size:26 final size:26
Alignment explanation
Indices: 26726732--26726793 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 26
26726722 ACCTAAATTC
26726732 AAATGGTAAAACCTTATAGTTTCATTA
1 AAAT-GTAAAACCTTATAGTTTCATTA
*
26726759 AAATGTAAAAACCTTATGGTTTCATTA
1 AAATGT-AAAACCTTATAGTTTCATTA
26726786 AAATGTAA
1 AAATGTAA
26726794 CATCTACTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 4 0.12
27 29 0.88
ACGTcount: A:0.44, C:0.10, G:0.11, T:0.35
Consensus pattern (26 bp):
AAATGTAAAACCTTATAGTTTCATTA
Found at i:26726791 original size:27 final size:27
Alignment explanation
Indices: 26726739--26726793 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
26726729 TTCAAATGGT
26726739 AAAACCTTATAGTTTCATTAAAATGTA
1 AAAACCTTATAGTTTCATTAAAATGTA
*
26726766 AAAACCTTATGGTTTCATTAAAATGTA
1 AAAACCTTATAGTTTCATTAAAATGTA
26726793 A
1 A
26726794 CATCTACTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.44, C:0.11, G:0.09, T:0.36
Consensus pattern (27 bp):
AAAACCTTATAGTTTCATTAAAATGTA
Found at i:26727841 original size:145 final size:144
Alignment explanation
Indices: 26727679--26727996 Score: 460
Period size: 146 Copynumber: 2.2 Consensus size: 144
26727669 TGACTGAATT
* *
26727679 TTTTTTTTTTACAAAATC-AAAGTTTTCTTTTAAAAAAGATCACTACTTTTCTTAAAAATCAAAA
1 TTTTTATTTTA-AAAATCTAAAGTTTTCTTTTAAAAAA-AACACTACTTTTCTTAAAAATCAAAA
* * * *
26727743 TTTTATTTCGAAATAGTTGAAAAAGATCAAAATTTTGTTTTAAAAATTTTAAACTTTTTCTTTAA
64 CTTTATTTCGAAATAGTTGAAAAAGATCAAAACTTTGCTTTAAAAA-TTTAAACTTTTCCTTTAA
*
26727808 AATGACTAAAAAACATA
128 AATGACTAAAAAACAGA
* * * *
26727825 TTTTTATTTTAAAAATCTAAACGTTTGCTTTTAAAAAAAACAGTATTTTTCTTAAAAATGAAAAC
1 TTTTTATTTTAAAAATCTAAA-GTTTTCTTTTAAAAAAAACACTACTTTTCTTAAAAATCAAAAC
* *
26727890 TTTATTTCGAAATAGTTGAAAAAGATCAAAACTTTGCTTTAAGAATTTAAACTTTTCCTTTAATA
65 TTTATTTCGAAATAGTTGAAAAAGATCAAAACTTTGCTTTAAAAATTTAAACTTTTCCTTTAAAA
26727955 TGACTAAAAAACAGA
130 TGACTAAAAAACAGA
*
26727970 TTTTTACTTTAAAAATCTAAA-TTTTCT
1 TTTTTATTTTAAAAATCTAAAGTTTTCT
26727997 CTTTTTTTTA
Statistics
Matches: 155, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
143 5 0.03
145 58 0.37
146 77 0.50
147 15 0.10
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.42
Consensus pattern (144 bp):
TTTTTATTTTAAAAATCTAAAGTTTTCTTTTAAAAAAAACACTACTTTTCTTAAAAATCAAAACT
TTATTTCGAAATAGTTGAAAAAGATCAAAACTTTGCTTTAAAAATTTAAACTTTTCCTTTAAAAT
GACTAAAAAACAGA
Found at i:26728227 original size:3 final size:3
Alignment explanation
Indices: 26728219--26728244 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
26728209 ACTAGAATGC
26728219 TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TT
26728245 TTTCCTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:26732979 original size:11 final size:11
Alignment explanation
Indices: 26732965--26732995 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
26732955 CAATTTCACA
26732965 CAATTTTCATT
1 CAATTTTCATT
26732976 CAATTTTCATT
1 CAATTTTCATT
26732987 CAATTTTCA
1 CAATTTTCA
26732996 ACAATGGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.29, C:0.19, G:0.00, T:0.52
Consensus pattern (11 bp):
CAATTTTCATT
Found at i:26737327 original size:23 final size:21
Alignment explanation
Indices: 26737285--26737327 Score: 59
Period size: 23 Copynumber: 2.0 Consensus size: 21
26737275 CTAGCCTCGT
26737285 CTTTCTTCTTTCTTCCTTTCC
1 CTTTCTTCTTTCTTCCTTTCC
*
26737306 CTTTTTTCTTTTCTTTCCTTTC
1 CTTTCTTC-TTTC-TTCCTTTC
26737328 TGTTTCGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 4 0.21
23 8 0.42
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (21 bp):
CTTTCTTCTTTCTTCCTTTCC
Found at i:26742575 original size:52 final size:52
Alignment explanation
Indices: 26742513--26742651 Score: 262
Period size: 52 Copynumber: 2.7 Consensus size: 52
26742503 AGGATATTTT
26742513 GACTCTAATGCCAAAGGAGATTTGCCCGAAAGGGACGAAGGAGCCAACGAAG
1 GACTCTAATGCCAAAGGAGATTTGCCCGAAAGGGACGAAGGAGCCAACGAAG
26742565 GACTCTAATGCCAAAGGAGATTTGCCCGAAAGGGACGAAGGAGCCAACGAAG
1 GACTCTAATGCCAAAGGAGATTTGCCCGAAAGGGACGAAGGAGCCAACGAAG
*
26742617 GACTCTAATGCCAAAGGAGATTTG-CCGAAATGGAC
1 GACTCTAATGCCAAAGGAGATTTGCCCGAAAGGGAC
26742652 AAAGTTTATA
Statistics
Matches: 86, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
51 10 0.12
52 76 0.88
ACGTcount: A:0.36, C:0.21, G:0.29, T:0.14
Consensus pattern (52 bp):
GACTCTAATGCCAAAGGAGATTTGCCCGAAAGGGACGAAGGAGCCAACGAAG
Found at i:26751590 original size:18 final size:17
Alignment explanation
Indices: 26751563--26751611 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 17
26751553 ATCAATCAAA
*
26751563 AAATTATTTTTATTTTT
1 AAATTTTTTTTATTTTT
*
26751580 ACAATTTTTTTAATTTTT
1 A-AATTTTTTTTATTTTT
26751598 AAATAATTTTTTTA
1 AAAT--TTTTTTTA
26751612 CATCCGGTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 4 0.15
18 15 0.58
19 7 0.27
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (17 bp):
AAATTTTTTTTATTTTT
Found at i:26758094 original size:16 final size:16
Alignment explanation
Indices: 26758057--26758096 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
26758047 TAAATAAAAT
* *
26758057 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
26758073 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
26758089 TAAAATTA
1 TAAAATTA
26758097 TAAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:26759039 original size:9 final size:9
Alignment explanation
Indices: 26759025--26759074 Score: 91
Period size: 9 Copynumber: 5.6 Consensus size: 9
26759015 TGAAGAAACC
26759025 TCGTCGTCA
1 TCGTCGTCA
26759034 TCGTCGTCA
1 TCGTCGTCA
26759043 TCGTCGTCA
1 TCGTCGTCA
*
26759052 TCTTCGTCA
1 TCGTCGTCA
26759061 TCGTCGTCA
1 TCGTCGTCA
26759070 TCGTC
1 TCGTC
26759075 CTTTTTGCAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 39 1.00
ACGTcount: A:0.10, C:0.34, G:0.20, T:0.36
Consensus pattern (9 bp):
TCGTCGTCA
Found at i:26765461 original size:18 final size:18
Alignment explanation
Indices: 26765424--26765461 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
26765414 AAAAAATCAC
*
26765424 ATTTTTTACATTTAATAT
1 ATTTTTTACATTTAAAAT
26765442 ATTTTTTA-ATTTCAAAAT
1 ATTTTTTACATTT-AAAAT
26765460 AT
1 AT
26765462 ATAGTGACAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.37, C:0.05, G:0.00, T:0.58
Consensus pattern (18 bp):
ATTTTTTACATTTAAAAT
Found at i:26782780 original size:26 final size:26
Alignment explanation
Indices: 26782751--26782800 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26782741 TCCCATCCCT
*
26782751 ATTTTACCATTCGTAAAATTTTGATG
1 ATTTTACCATTAGTAAAATTTTGATG
*
26782777 ATTTTACCCTTAGTAAAATTTTGA
1 ATTTTACCATTAGTAAAATTTTGA
26782801 GAAAATATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.12, G:0.10, T:0.46
Consensus pattern (26 bp):
ATTTTACCATTAGTAAAATTTTGATG
Found at i:26784394 original size:20 final size:20
Alignment explanation
Indices: 26784371--26784414 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
26784361 TTAATGTAAA
*
26784371 CAATGGATTATTTTATTGAC
1 CAATGGATTATTTTATTAAC
26784391 CAATGGATTATTTTATTAAC
1 CAATGGATTATTTTATTAAC
26784411 CAAT
1 CAAT
26784415 TTGTTCGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (20 bp):
CAATGGATTATTTTATTAAC
Found at i:26788414 original size:14 final size:16
Alignment explanation
Indices: 26788395--26788427 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
26788385 GAGAAAGCAA
26788395 TTGGTTTT-TTTT-TT
1 TTGGTTTTGTTTTGTT
26788409 TTGGTTTTGTTTTGTT
1 TTGGTTTTGTTTTGTT
26788425 TTG
1 TTG
26788428 TTTAAGTACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 4 0.24
16 5 0.29
ACGTcount: A:0.00, C:0.00, G:0.21, T:0.79
Consensus pattern (16 bp):
TTGGTTTTGTTTTGTT
Found at i:26798077 original size:14 final size:15
Alignment explanation
Indices: 26798052--26798084 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
26798042 GTTTAATTAG
26798052 TTAATGCTTAATAAA
1 TTAATGCTTAATAAA
*
26798067 TTAAT-CTTAATTAA
1 TTAATGCTTAATAAA
26798081 TTAA
1 TTAA
26798085 GTTCAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.45
Consensus pattern (15 bp):
TTAATGCTTAATAAA
Found at i:26802976 original size:19 final size:19
Alignment explanation
Indices: 26802952--26802991 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
26802942 AAAATATCAT
26802952 ATTAATTTTAATTGATTTG
1 ATTAATTTTAATTGATTTG
* *
26802971 ATTAATTTTATTTTATTTG
1 ATTAATTTTAATTGATTTG
26802990 AT
1 AT
26802992 CAAAATTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.62
Consensus pattern (19 bp):
ATTAATTTTAATTGATTTG
Found at i:26805259 original size:6 final size:6
Alignment explanation
Indices: 26805248--26805353 Score: 70
Period size: 6 Copynumber: 19.3 Consensus size: 6
26805238 ATAAGTAGAA
* * * *
26805248 TAGCAG TAGCAG TAGCAG TAGTAG TAACA- -A-CAG TAGTAG TAGCAA
1 TAGCAG TAGCAG TAGCAG TAGCAG TAGCAG TAGCAG TAGCAG TAGCAG
* ** *
26805293 CAG-AG TAGCAG TAGTGG TA--A- TAGCAG TAGCAG TAGCAG CAGCAG
1 TAGCAG TAGCAG TAGCAG TAGCAG TAGCAG TAGCAG TAGCAG TAGCAG
26805337 -A--AG TAGCAG TAGCAG TA
1 TAGCAG TAGCAG TAGCAG TA
26805354 TTAGTAGTAG
Statistics
Matches: 77, Mismatches: 13, Indels: 20
0.70 0.12 0.18
Matches are distributed among these distances:
3 6 0.08
4 2 0.03
5 6 0.08
6 63 0.82
ACGTcount: A:0.38, C:0.14, G:0.30, T:0.18
Consensus pattern (6 bp):
TAGCAG
Found at i:26805281 original size:15 final size:15
Alignment explanation
Indices: 26805263--26805300 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
26805253 GTAGCAGTAG
26805263 CAGTAGTAGTAACAA
1 CAGTAGTAGTAACAA
*
26805278 CAGTAGTAGTAGCAA
1 CAGTAGTAGTAACAA
26805293 CAG-AGTAG
1 CAGTAGTAG
26805301 CAGTAGTGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 5 0.23
15 17 0.77
ACGTcount: A:0.42, C:0.13, G:0.26, T:0.18
Consensus pattern (15 bp):
CAGTAGTAGTAACAA
Found at i:26805362 original size:21 final size:21
Alignment explanation
Indices: 26805296--26805363 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
26805286 GTAGCAACAG
** *
26805296 AGTAGCAGTAGTGGTAATAGC
1 AGTAGCAGTAGCAGTAATAGA
* **
26805317 AGTAGCAGTAGCAGCAGCAGA
1 AGTAGCAGTAGCAGTAATAGA
* *
26805338 AGTAGCAGTAGCAGTATTAGT
1 AGTAGCAGTAGCAGTAATAGA
26805359 AGTAG
1 AGTAG
26805364 TTAGTAATAA
Statistics
Matches: 37, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 37 1.00
ACGTcount: A:0.35, C:0.12, G:0.32, T:0.21
Consensus pattern (21 bp):
AGTAGCAGTAGCAGTAATAGA
Found at i:26816344 original size:17 final size:19
Alignment explanation
Indices: 26816312--26816346 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
26816302 TTATAAAATA
26816312 TGAACTTGATAAATGATAT
1 TGAACTTGATAAATGATAT
26816331 TGAA-TTGA-AAATGATA
1 TGAACTTGATAAATGATA
26816347 GTATGAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 4 0.25
19 4 0.25
ACGTcount: A:0.46, C:0.03, G:0.17, T:0.34
Consensus pattern (19 bp):
TGAACTTGATAAATGATAT
Found at i:26820944 original size:2 final size:2
Alignment explanation
Indices: 26820937--26820978 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
26820927 AAAGTATTTG
26820937 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26820979 TAGATTATAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26824049 original size:2 final size:2
Alignment explanation
Indices: 26824044--26824081 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
26824034 CTCTCACTAT
* *
26824044 CA CA CA CA CA CA CA CA CA CA CA AA CA CA AA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
26824082 TGCGCGCATA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.55, C:0.45, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:26825576 original size:111 final size:109
Alignment explanation
Indices: 26825351--26825579 Score: 413
Period size: 111 Copynumber: 2.1 Consensus size: 109
26825341 AGCCTTTAAC
*
26825351 TTTTGTTTCTTTTAATAATTTGTGAACATTTCTCTTAAACAAAATAGTGAGCTGTGAGCAACATG
1 TTTTGTTGCTTTTAATAATTTGTGAACATTTCTCTTAAACAAAATAGTGAGCTGTGAGCAACATG
26825416 TAGTCTTCTAGGTTCTGCTTTCAGCTGATTGTTAATTTTTTTCT
66 TAGTCTTCTAGGTTCTGCTTTCAGCTGATTGTTAATTTTTTTCT
* *
26825460 TTTTGTTGCTTTTAATAATTTTTGAACATTTCTCTTAAACAAAATAGTGAGCTTTGAGCATCACA
1 TTTTGTTGCTTTTAATAATTTGTGAACATTTCTCTTAAACAAAATAGTGAGCTGTGAGCA--ACA
26825525 TGTAGTCTTCTAGGTTCTGCTTTCAGCTGATTGTTAATTTTTTTCT
64 TGTAGTCTTCTAGGTTCTGCTTTCAGCTGATTGTTAATTTTTTTCT
26825571 TTTTGTTGC
1 TTTTGTTGC
26825580 ATCCCATTGG
Statistics
Matches: 115, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
109 57 0.50
111 58 0.50
ACGTcount: A:0.23, C:0.14, G:0.15, T:0.48
Consensus pattern (109 bp):
TTTTGTTGCTTTTAATAATTTGTGAACATTTCTCTTAAACAAAATAGTGAGCTGTGAGCAACATG
TAGTCTTCTAGGTTCTGCTTTCAGCTGATTGTTAATTTTTTTCT
Found at i:26835526 original size:56 final size:56
Alignment explanation
Indices: 26835389--26835528 Score: 151
Period size: 56 Copynumber: 2.5 Consensus size: 56
26835379 TATGTAAATT
* * *
26835389 TATGTAAAATTATTAAGCCAAAAAATTTTTCTTAATGGTTAGTAAAATTTATCAAA
1 TATGTAAAATTATTAAGCCAAAAAAATTGTCTTAATGGTTAGTAAAATGTATCAAA
* * * * *
26835445 TAATCTCAAATTATTAAGTCC--AAAAATTGTGTTAATGGTTATTAAAGTGT-TCAAAA
1 T-ATGTAAAATTATTAAG-CCAAAAAAATTGTCTTAATGGTTAGTAAAATGTATC-AAA
*
26835501 TATGTAAAATTATCAAGCCAAAAAAATT
1 TATGTAAAATTATTAAGCCAAAAAAATT
26835529 TAGGTTAGTT
Statistics
Matches: 68, Mismatches: 11, Indels: 10
0.76 0.12 0.11
Matches are distributed among these distances:
54 2 0.03
55 15 0.22
56 35 0.51
57 14 0.21
58 2 0.03
ACGTcount: A:0.45, C:0.09, G:0.10, T:0.36
Consensus pattern (56 bp):
TATGTAAAATTATTAAGCCAAAAAAATTGTCTTAATGGTTAGTAAAATGTATCAAA
Found at i:26835698 original size:29 final size:29
Alignment explanation
Indices: 26835621--26836745 Score: 1978
Period size: 29 Copynumber: 39.1 Consensus size: 29
26835611 NNNNNNNNTA
* *
26835621 AATTAATTTAGGTTA-GATTAGGGTTTTA
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
* *
26835649 AATTAATTAAGGTTA-GATTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
* * *
26835677 AGTTAATTTATGTTAGGTTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26835706 AATTAATTTAGGTTA-GGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
* * *
26835734 AGTTAATTTAGGTTA-GATTAGGGTTTTA
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
*
26835762 AATTAATTTA-GTTAGGTTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26835790 AATTAATTTAGGTTA-GGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
* * *
26835818 AGTTAATTTAGGTTA-GATTAGGTTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
* * * *
26835846 AATTAATTTAGGTTAGGTTTATGGTTGTA
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
* *
26835875 AATTAATTTAGGTTA-GATTAGGGTTTTA
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
*
26835903 AATTAATTAAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26835932 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26835961 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26835990 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836019 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836048 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836077 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836106 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836135 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836164 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836193 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836222 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836251 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836280 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836309 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836338 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836367 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836396 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836425 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836454 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836483 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836512 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836541 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836570 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836599 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836628 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836657 AATTAATTTAGGTTAGGGTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
*
26836686 AATTAATTTAGGTTAGGTTTAGGGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
* *
26836715 AATTAATTTAGGTTAGGTTTAGAGTTTTT
1 AATTAATTTAGGTTAGGGTTAGGGTTTTT
26836744 AA
1 AA
26836746 CTGCGTCAGG
Statistics
Matches: 1058, Mismatches: 34, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
27 4 0.00
28 180 0.17
29 874 0.83
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.49
Consensus pattern (29 bp):
AATTAATTTAGGTTAGGGTTAGGGTTTTT
Found at i:26842103 original size:15 final size:16
Alignment explanation
Indices: 26842080--26842112 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
26842070 ATAGTTAATT
26842080 AATTAAAAAAGAT-TA
1 AATTAAAAAAGATGTA
*
26842095 AATTGAAAAAGATGTA
1 AATTAAAAAAGATGTA
26842111 AA
1 AA
26842113 AGTTAAACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (16 bp):
AATTAAAAAAGATGTA
Found at i:26848265 original size:36 final size:36
Alignment explanation
Indices: 26848218--26848292 Score: 141
Period size: 36 Copynumber: 2.1 Consensus size: 36
26848208 TGGACCCTCA
*
26848218 TTAAATGACCTAATAATAGAAATGGTGAGGAATTCT
1 TTAAATGACCTAATAATAGAAATGATGAGGAATTCT
26848254 TTAAATGACCTAATAATAGAAATGATGAGGAATTCT
1 TTAAATGACCTAATAATAGAAATGATGAGGAATTCT
26848290 TTA
1 TTA
26848293 GGTTGTGGTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.43, C:0.08, G:0.17, T:0.32
Consensus pattern (36 bp):
TTAAATGACCTAATAATAGAAATGATGAGGAATTCT
Found at i:26854484 original size:107 final size:107
Alignment explanation
Indices: 26854294--26854486 Score: 242
Period size: 107 Copynumber: 1.8 Consensus size: 107
26854284 CACGATGGCT
* * * * * * * * *
26854294 GAGATGCTGCATATGTTGTGGATTCTCGACAGCTTGTGTGAGTAGCATCGTAAATTGGTGAATTG
1 GAGATCCTACATATGGTGTGAATTCTCAACAGCTTGTGTGAGCAGCATCATAAACTGGTGAAATG
** **
26854359 AATGGCTACTCTGTTATGATGGTATAGATCGTTCAGATAGTC
66 AATGAATACTCTACTATGATGGTATAGATCGTTCAGATAGTC
* *
26854401 GAGATCCTACATATGGTGTGAATTCTCAACAGCTTGTGTGAGCAGCATCATGAACTGGTTAAATG
1 GAGATCCTACATATGGTGTGAATTCTCAACAGCTTGTGTGAGCAGCATCATAAACTGGTGAAATG
*
26854466 ACTGAATACTCTACTATGATG
66 AATGAATACTCTACTATGATG
26854487 AAACAAGTTA
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
107 70 1.00
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (107 bp):
GAGATCCTACATATGGTGTGAATTCTCAACAGCTTGTGTGAGCAGCATCATAAACTGGTGAAATG
AATGAATACTCTACTATGATGGTATAGATCGTTCAGATAGTC
Found at i:26860665 original size:17 final size:17
Alignment explanation
Indices: 26860645--26860677 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
26860635 TTAGAATTGG
26860645 ATTGAGAAAATAATTTA
1 ATTGAGAAAATAATTTA
26860662 ATTGAGAAAATAATTT
1 ATTGAGAAAATAATTT
26860678 TATTAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (17 bp):
ATTGAGAAAATAATTTA
Found at i:26870260 original size:3 final size:3
Alignment explanation
Indices: 26870252--26870278 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
26870242 TTTGATATAC
26870252 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
26870279 CAAATATGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:26871321 original size:28 final size:28
Alignment explanation
Indices: 26871281--26871356 Score: 125
Period size: 28 Copynumber: 2.7 Consensus size: 28
26871271 GGTTTTTGGA
26871281 TTAAAAACCTTAAACCCTAATTTATTTT
1 TTAAAAACCTTAAACCCTAATTTATTTT
26871309 TTAAAAACCTTAAACCCTAATTTATTTT
1 TTAAAAACCTTAAACCCTAATTTATTTT
** *
26871337 CCAAAGACCTTAAACCCTAA
1 TTAAAAACCTTAAACCCTAA
26871357 CATACAAATC
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.41, C:0.22, G:0.01, T:0.36
Consensus pattern (28 bp):
TTAAAAACCTTAAACCCTAATTTATTTT
Found at i:26871587 original size:30 final size:29
Alignment explanation
Indices: 26871524--26871587 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
26871514 GCCCATTCCG
** * *
26871524 GTAAATAATATTTTAAGTGGCCTATTTTC
1 GTAAATAATATTGAAAATGGCCTATTTTA
*
26871553 GTAAATAATATTGAAAATGGGCCTTTTTTA
1 GTAAATAATATTGAAAAT-GGCCTATTTTA
26871583 GTAAA
1 GTAAA
26871588 ATACTCTTGT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 15 0.52
30 14 0.48
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.41
Consensus pattern (29 bp):
GTAAATAATATTGAAAATGGCCTATTTTA
Found at i:26874476 original size:34 final size:35
Alignment explanation
Indices: 26874418--26874484 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
26874408 CAAACACCAG
26874418 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
26874453 AAAATATTTTTCAG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
26874485 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.10, G:0.09, T:0.34
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:26875342 original size:23 final size:23
Alignment explanation
Indices: 26875310--26875389 Score: 79
Period size: 24 Copynumber: 3.4 Consensus size: 23
26875300 TACTACAAAA
* *
26875310 AGTGGTTTGTCCACAACGATATG
1 AGTGGCTTGTCCATAACGATATG
* **
26875333 AGTGGCTTGTCCATAACGCTAACA
1 AGTGGCTTGTCCATAACGAT-ATG
* *
26875357 AGTGGCTTGACCATAACAATATTG
1 AGTGGCTTGTCCATAACGATA-TG
26875381 AGTGGCTTG
1 AGTGGCTTG
26875390 GACACAATGT
Statistics
Matches: 45, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
23 18 0.40
24 27 0.60
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (23 bp):
AGTGGCTTGTCCATAACGATATG
Found at i:26876314 original size:254 final size:254
Alignment explanation
Indices: 26875856--26876363 Score: 759
Period size: 254 Copynumber: 2.0 Consensus size: 254
26875846 TCTCGATATC
* * * * *
26875856 CAAAATTATTGTTGTGTCATCAAACAAGTTGATCTGTGGAAGCTGAATCGTAGCTTTGATACCAA
1 CAAAATCATTGTTGTGTCATCAAACAAGTCGATCTGCGGAACCTAAATCGTAGCTTTGATACCAA
* *
26875921 TTTGTTGGGGATCGACCCCCATATGCAACAAAGTAGTAAAAGCGGAGAAGAACGAACACAAATAT
66 TTTGTTAGGGATCGACCCCCATATGCAACAAAGTAGTAAAAGCGGAGAAGAACAAACACAAATAT
*
26875986 TTTACGTAGAAAACCCTCAAAGAGGGAAAAACCACGGGTAGAGGAGGAATCGACTTCTTACTAAA
131 TTTACGTAGAAAACCCTCAAAGAGGGAAAAACCACAGGTAGAGGAGGAATCGACTTCTTACTAAA
*
26876051 TGAGTAAACAAATAAGAGTACAATATGGAGAAAATAAACCTAAATGTATTAAACATACA
196 TGAGTAAACAAATAAGAGTACAATATGGAGAAAATAAACCTAAATGTACTAAACATACA
* *
26876110 CAAAATCATTGTTGTGTCATCGAACAAGTCGATCTGCGGAACCTAAATTGTAGCTTTGATACCAA
1 CAAAATCATTGTTGTGTCATCAAACAAGTCGATCTGCGGAACCTAAATCGTAGCTTTGATACCAA
* *** ** ***
26876175 TCTT-TTAGGGATTGACCTGTATATGCAATGAAGTAGTAAATTTGGAGAAGAACAAACACAAATA
66 T-TTGTTAGGGATCGACCCCCATATGCAACAAAGTAGTAAAAGCGGAGAAGAACAAACACAAATA
* *
26876239 TTTTACGTAGAAAACCCTGAAAGAGGGAAAAACCACAGGTAGAGGAGGTATCGACTT-TTCACTA
130 TTTTACGTAGAAAACCCTCAAAGAGGGAAAAACCACAGGTAGAGGAGGAATCGACTTCTT-ACTA
* * *
26876303 AATGTGTAAACAAATAAGAGTACAATATGGAGAAAATAAATCTAAATGTACTAAACGTACA
194 AATGAGTAAACAAATAAGAGTACAATATGGAGAAAATAAACCTAAATGTACTAAACATACA
26876364 TTACCCGAAA
Statistics
Matches: 227, Mismatches: 25, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
253 2 0.01
254 223 0.98
255 2 0.01
ACGTcount: A:0.41, C:0.15, G:0.20, T:0.24
Consensus pattern (254 bp):
CAAAATCATTGTTGTGTCATCAAACAAGTCGATCTGCGGAACCTAAATCGTAGCTTTGATACCAA
TTTGTTAGGGATCGACCCCCATATGCAACAAAGTAGTAAAAGCGGAGAAGAACAAACACAAATAT
TTTACGTAGAAAACCCTCAAAGAGGGAAAAACCACAGGTAGAGGAGGAATCGACTTCTTACTAAA
TGAGTAAACAAATAAGAGTACAATATGGAGAAAATAAACCTAAATGTACTAAACATACA
Found at i:26876705 original size:23 final size:23
Alignment explanation
Indices: 26876668--26876712 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
26876658 GTCCCATTCG
* *
26876668 TGTAATATCCTGAAAATTACTAT
1 TGTAATACCCCGAAAATTACTAT
26876691 TGTAATACCCCGAAAATTACTA
1 TGTAATACCCCGAAAATTACTA
26876713 CAGTAAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.40, C:0.18, G:0.09, T:0.33
Consensus pattern (23 bp):
TGTAATACCCCGAAAATTACTAT
Found at i:26876718 original size:23 final size:23
Alignment explanation
Indices: 26876669--26876718 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
26876659 TCCCATTCGT
* * **
26876669 GTAATATCCTGAAAATTACTATT
1 GTAATACCCCGAAAATTACTACA
26876692 GTAATACCCCGAAAATTACTACA
1 GTAATACCCCGAAAATTACTACA
26876715 GTAA
1 GTAA
26876719 GAAAGTAGGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (23 bp):
GTAATACCCCGAAAATTACTACA
Found at i:26879721 original size:13 final size:13
Alignment explanation
Indices: 26879703--26879727 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26879693 CATTTGTTAA
26879703 AAAATAAAATAAC
1 AAAATAAAATAAC
26879716 AAAATAAAATAA
1 AAAATAAAATAA
26879728 ATTAAAACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.04, G:0.00, T:0.16
Consensus pattern (13 bp):
AAAATAAAATAAC
Found at i:26886116 original size:18 final size:17
Alignment explanation
Indices: 26886088--26886122 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26886078 AATTATAAGA
*
26886088 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26886105 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26886123 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26886263 original size:156 final size:156
Alignment explanation
Indices: 26886072--26887951 Score: 3733
Period size: 156 Copynumber: 12.1 Consensus size: 156
26886062 TTCAGCATGC
26886072 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
26886137 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
66 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
26886202 ACAATAATCATTTACCAAAACAATTT
131 ACAATAATCATTTACCAAAACAATTT
26886228 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
26886293 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
66 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
26886358 ACAATAATCATTTACCAAAACAATTT
131 ACAATAATCATTTACCAAAACAATTT
26886384 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
26886449 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
66 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
26886514 ACAATAATCATTTACCAAAACAATTT
131 ACAATAATCATTTACCAAAACAATTT
26886540 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
26886605 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
66 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
26886670 ACAATAATCATTTACCAAAACAATTT
131 ACAATAATCATTTACCAAAACAATTT
26886696 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
26886761 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
66 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
26886826 ACAATAATCATTTACCAAAACAATTT
131 ACAATAATCATTTACCAAAACAATTT
26886852 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
26886917 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
66 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
26886982 ACAATAATCATTTACCAAAACAATTT
131 ACAATAATCATTTACCAAAACAATTT
26887008 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
26887073 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
66 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
26887138 ACAATAATCATTTACCAAAACAATTT
131 ACAATAATCATTTACCAAAACAATTT
26887164 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
26887229 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
66 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
26887294 ACAATAATCATTTACCAAAACAATTT
131 ACAATAATCATTTACCAAAACAATTT
26887320 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
26887385 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
66 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
26887450 ACAATAATCATTTACCAAAACAATTT
131 ACAATAATCATTTACCAAAACAATTT
26887476 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
26887541 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
66 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
26887606 ACAATAATCATTTACCAAAACAATTT
131 ACAATAATCATTTACCAAAACAATTT
26887632 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
1 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
26887697 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
66 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
26887762 ACAATAATCATTTACCAAAACAATTT
131 ACAATAATCATTTACCAAAACAATTT
*
26887788 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATTATAATTAT
1 TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
*
26887853 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATA
66 GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
26887918 ACAATAATCATTTACCAAAACAATTT
131 ACAATAATCATTTACCAAAACAATTT
*
26887944 TATGCTAA
1 TCTGCTAA
26887952 GGGTATTCTA
Statistics
Matches: 1721, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
156 1721 1.00
ACGTcount: A:0.47, C:0.06, G:0.03, T:0.44
Consensus pattern (156 bp):
TCTGCTAATTATAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
GTTTAAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACATTA
ACAATAATCATTTACCAAAACAATTT
Found at i:26886272 original size:18 final size:17
Alignment explanation
Indices: 26886244--26886278 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26886234 AATTATAAGA
*
26886244 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26886261 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26886279 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26886428 original size:18 final size:17
Alignment explanation
Indices: 26886400--26886434 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26886390 AATTATAAGA
*
26886400 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26886417 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26886435 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26886584 original size:18 final size:17
Alignment explanation
Indices: 26886556--26886590 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26886546 AATTATAAGA
*
26886556 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26886573 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26886591 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26886740 original size:18 final size:17
Alignment explanation
Indices: 26886712--26886746 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26886702 AATTATAAGA
*
26886712 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26886729 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26886747 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26886896 original size:18 final size:17
Alignment explanation
Indices: 26886868--26886902 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26886858 AATTATAAGA
*
26886868 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26886885 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26886903 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26887052 original size:18 final size:17
Alignment explanation
Indices: 26887024--26887058 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26887014 AATTATAAGA
*
26887024 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26887041 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26887059 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26887208 original size:18 final size:17
Alignment explanation
Indices: 26887180--26887214 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26887170 AATTATAAGA
*
26887180 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26887197 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26887215 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26887364 original size:18 final size:17
Alignment explanation
Indices: 26887336--26887370 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26887326 AATTATAAGA
*
26887336 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26887353 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26887371 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26887520 original size:18 final size:17
Alignment explanation
Indices: 26887492--26887526 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26887482 AATTATAAGA
*
26887492 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26887509 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26887527 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26887676 original size:18 final size:17
Alignment explanation
Indices: 26887648--26887682 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26887638 AATTATAAGA
*
26887648 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
26887665 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
26887683 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:26887832 original size:18 final size:18
Alignment explanation
Indices: 26887804--26887852 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 18
26887794 AATTATAAGA
26887804 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAATTATAT
26887821 ATTTTAATTAAA--ATAT
1 ATTTTAATTAAATTATAT
26887837 A-TTTAATTATAATTAT
1 ATTTTAATTA-AATTAT
26887853 GTTTAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
15 8 0.29
16 7 0.25
17 5 0.18
18 8 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
ATTTTAATTAAATTATAT
Found at i:26887838 original size:16 final size:16
Alignment explanation
Indices: 26887804--26887858 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
26887794 AATTATAAGA
26887804 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
26887821 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
26887837 A-TTTAATTATAAT-T
1 ATTTTAATTAAAATAT
26887851 ATGTTTAA
1 AT-TTTAA
26887859 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 2 0.06
15 11 0.32
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:26888095 original size:16 final size:16
Alignment explanation
Indices: 26888074--26888125 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
26888064 GATTAGCTAT
26888074 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
26888090 TACACCTCTAATCTAA
1 TACACCTCTAATCCAA
26888106 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
26888122 TACA
1 TACA
26888126 GCGAACCAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.27
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:26888755 original size:18 final size:18
Alignment explanation
Indices: 26888729--26888767 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
26888719 TATTTAATAT
26888729 TTTTATAATATTTTACAAA
1 TTTTATAATATTTTA-AAA
*
26888748 TTTT-TAATTTTTTAAAA
1 TTTTATAATATTTTAAAA
26888765 TTT
1 TTT
26888768 AAAAAATTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 6 0.32
18 9 0.47
19 4 0.21
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTATAATATTTTAAAA
Found at i:26900078 original size:23 final size:23
Alignment explanation
Indices: 26900052--26900196 Score: 186
Period size: 23 Copynumber: 6.3 Consensus size: 23
26900042 ATAAGTGCCA
26900052 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
26900075 CACTGATACGTAGCC-ATAGCTAC
1 CACTGATATGTAGCCGA-AGCTAC
* *
26900098 CACTGAAATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
26900121 CACTGATATGTAGCCGTAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* * *
26900144 CATTGAAATGCAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
26900167 CCCTGATATGTAGCCGTAA-CTAC
1 CACTGATATGTAGCCG-AAGCTAC
26900190 CACTGAT
1 CACTGAT
26900197 CAATAACACT
Statistics
Matches: 104, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
22 1 0.01
23 100 0.96
24 3 0.03
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:26900119 original size:46 final size:46
Alignment explanation
Indices: 26900052--26900195 Score: 216
Period size: 46 Copynumber: 3.1 Consensus size: 46
26900042 ATAAGTGCCA
* * *
26900052 CACTGATATGTAGCCGAAGCTACCACTGATACGTAGCCATAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
*
26900098 CACTGAAATGTAGCCAAAGCTACCACTGATATGTAGCCGTAGCTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
* * * *
26900144 CATTGAAATGCAGCCGAAGCTACCCCTGATATGTAGCCGTAACTAC
1 CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
26900190 CACTGA
1 CACTGA
26900196 TCAATAACAC
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 88 1.00
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
CACTGAAATGTAGCCGAAGCTACCACTGATATGTAGCCGTAGCTAC
Found at i:26910612 original size:42 final size:42
Alignment explanation
Indices: 26910553--26910634 Score: 146
Period size: 42 Copynumber: 2.0 Consensus size: 42
26910543 TAACCTAATT
*
26910553 GGGAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATGA
1 GGGAAAATAATTCCCTTATTCCAATAAACTACTAAAAGATGA
*
26910595 GGGAAAATAATTTCCTTATTCCAATAAACTACTAAAAGAT
1 GGGAAAATAATTCCCTTATTCCAATAAACTACTAAAAGAT
26910635 AAAATAAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (42 bp):
GGGAAAATAATTCCCTTATTCCAATAAACTACTAAAAGATGA
Found at i:26910644 original size:42 final size:42
Alignment explanation
Indices: 26910555--26910645 Score: 128
Period size: 42 Copynumber: 2.2 Consensus size: 42
26910545 ACCTAATTGG
* * **
26910555 GAAAATAATTCCCTTATTCTAATAAACTACTAAAAGATGAGG
1 GAAAATAATTCCCTTATTCCAATAAACTACTAAAAGATAAAA
*
26910597 GAAAATAATTTCCTTATTCCAATAAACTACTAAAAGATAAAA
1 GAAAATAATTCCCTTATTCCAATAAACTACTAAAAGATAAAA
*
26910639 TAAAATA
1 GAAAATA
26910646 TTCATAAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.51, C:0.13, G:0.08, T:0.29
Consensus pattern (42 bp):
GAAAATAATTCCCTTATTCCAATAAACTACTAAAAGATAAAA
Found at i:26911765 original size:24 final size:24
Alignment explanation
Indices: 26911733--26911783 Score: 86
Period size: 24 Copynumber: 2.1 Consensus size: 24
26911723 ACCTCTTTGT
26911733 GAGTGAACC-TTTCAAACCAAGCTC
1 GAGTGAACCGTTT-AAACCAAGCTC
26911757 GAGTGAACCGTTTAAACCAAGCTC
1 GAGTGAACCGTTTAAACCAAGCTC
26911781 GAG
1 GAG
26911784 GAGACTGCTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 23 0.88
25 3 0.12
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.20
Consensus pattern (24 bp):
GAGTGAACCGTTTAAACCAAGCTC
Found at i:26913827 original size:19 final size:19
Alignment explanation
Indices: 26913803--26913848 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
26913793 TTATTTATTC
*
26913803 TAAGATTTGTCTACCTAAA
1 TAAGATTTATCTACCTAAA
*
26913822 TAAGATTTATCTACTTAAA
1 TAAGATTTATCTACCTAAA
26913841 TAA-ATTTA
1 TAAGATTTA
26913849 AACTATATCC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 5 0.20
19 20 0.80
ACGTcount: A:0.41, C:0.11, G:0.07, T:0.41
Consensus pattern (19 bp):
TAAGATTTATCTACCTAAA
Found at i:26917353 original size:12 final size:13
Alignment explanation
Indices: 26917332--26917364 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
26917322 AATGGACATG
26917332 TAAATAAAT-AAA
1 TAAATAAATAAAA
*
26917344 TAAATGAATAAAA
1 TAAATAAATAAAA
26917357 TAAATAAA
1 TAAATAAA
26917365 AGATACACAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
12 8 0.44
13 10 0.56
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (13 bp):
TAAATAAATAAAA
Found at i:26918530 original size:15 final size:15
Alignment explanation
Indices: 26918510--26918540 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26918500 TTTCTTATGC
*
26918510 AAAAGATAAAATAAA
1 AAAAGATAAAAGAAA
26918525 AAAAGATAAAAGAAA
1 AAAAGATAAAAGAAA
26918540 A
1 A
26918541 GAAAACAAGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.81, C:0.00, G:0.10, T:0.10
Consensus pattern (15 bp):
AAAAGATAAAAGAAA
Found at i:26919409 original size:10 final size:10
Alignment explanation
Indices: 26919377--26919409 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
26919367 AAATAAAGTC
26919377 AAAA-TTCAA
1 AAAAGTTCAA
*
26919386 AAAAGTTCAT
1 AAAAGTTCAA
26919396 AAAAGTTCAA
1 AAAAGTTCAA
26919406 AAAA
1 AAAA
26919410 TAGAAAATAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 4 0.19
10 17 0.81
ACGTcount: A:0.64, C:0.09, G:0.06, T:0.21
Consensus pattern (10 bp):
AAAAGTTCAA
Found at i:26927065 original size:93 final size:93
Alignment explanation
Indices: 26926902--26927121 Score: 395
Period size: 93 Copynumber: 2.4 Consensus size: 93
26926892 AATATACGTG
*
26926902 ACAATCAAGTTCATACAAATATGTTACAAGTTAGTAAGCAAATTAAATCATGTGTTTCATGTGCA
1 ACAATCAAGTTCATACAAATATGTTACAAGTTAGTAAGCAAATTAAATCATGTGTTTCATGTACA
*
26926967 GTATTATTAATTAATGTTCAACAAATAT
66 ATATTATTAATTAATGTTCAACAAATAT
*
26926995 ACAATCAAGTTCATGCAAATATGTTACAAGTTAGTAAGCAAATTAAATCATGTGTTTCATGTACA
1 ACAATCAAGTTCATACAAATATGTTACAAGTTAGTAAGCAAATTAAATCATGTGTTTCATGTACA
*
26927060 ATATTATTAATTCATGTTCAACAAATAT
66 ATATTATTAATTAATGTTCAACAAATAT
*
26927088 ACAATCAAGTTCATACAAATATGTTACAATTTAG
1 ACAATCAAGTTCATACAAATATGTTACAAGTTAG
26927122 CAGTTAATAA
Statistics
Matches: 121, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 121 1.00
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (93 bp):
ACAATCAAGTTCATACAAATATGTTACAAGTTAGTAAGCAAATTAAATCATGTGTTTCATGTACA
ATATTATTAATTAATGTTCAACAAATAT
Found at i:26942524 original size:115 final size:115
Alignment explanation
Indices: 26942390--26942620 Score: 462
Period size: 115 Copynumber: 2.0 Consensus size: 115
26942380 CATTCACGTA
26942390 TCGGGAATTTGAGACATTGTGTCATAACTTACTAGATATGATGCTTTCTTTCTCGATTAACGTGA
1 TCGGGAATTTGAGACATTGTGTCATAACTTACTAGATATGATGCTTTCTTTCTCGATTAACGTGA
26942455 AAATATACTCATTTTCACGAATTTTTTTTAACATTTTAATACAAGGATCT
66 AAATATACTCATTTTCACGAATTTTTTTTAACATTTTAATACAAGGATCT
26942505 TCGGGAATTTGAGACATTGTGTCATAACTTACTAGATATGATGCTTTCTTTCTCGATTAACGTGA
1 TCGGGAATTTGAGACATTGTGTCATAACTTACTAGATATGATGCTTTCTTTCTCGATTAACGTGA
26942570 AAATATACTCATTTTCACGAATTTTTTTTAACATTTTAATACAAGGATCT
66 AAATATACTCATTTTCACGAATTTTTTTTAACATTTTAATACAAGGATCT
26942620 T
1 T
26942621 ATTTTTAAAA
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
115 116 1.00
ACGTcount: A:0.30, C:0.15, G:0.14, T:0.41
Consensus pattern (115 bp):
TCGGGAATTTGAGACATTGTGTCATAACTTACTAGATATGATGCTTTCTTTCTCGATTAACGTGA
AAATATACTCATTTTCACGAATTTTTTTTAACATTTTAATACAAGGATCT
Found at i:26948068 original size:107 final size:107
Alignment explanation
Indices: 26947879--26948088 Score: 323
Period size: 107 Copynumber: 2.0 Consensus size: 107
26947869 AAATGGGTTT
*
26947879 TTCACTGTACAAAAAATCAGGTTGTAACTCTATTTCATCAATACAAATCACGTGAGAGGGATCAG
1 TTCACTGTACAAAAAATCAGGTTGCAACTCTATTTCATCAATACAAATCACGTGAGAGGGATCAG
* *
26947944 AAAGATAACGACGTAACATCAATACATGGAACACATTAGCTC
66 AAAGATAACGACATAACATCAATACATGAAACACATTAGCTC
* * ** *
26947986 TTCACTGTACGAAAAATCGGGTTGCAACTCTATTTCATCTGTACAAATCACGTGAGAGGGA-CCG
1 TTCACTGTACAAAAAATCAGGTTGCAACTCTATTTCATCAATACAAATCACGTGAGAGGGATCAG
*
26948050 AAACGATAACGACATAACATCGATACATGAAACACATTA
66 AAA-GATAACGACATAACATCAATACATGAAACACATTA
26948089 TGAATCTTTT
Statistics
Matches: 93, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
106 5 0.05
107 88 0.95
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (107 bp):
TTCACTGTACAAAAAATCAGGTTGCAACTCTATTTCATCAATACAAATCACGTGAGAGGGATCAG
AAAGATAACGACATAACATCAATACATGAAACACATTAGCTC
Found at i:26952503 original size:39 final size:38
Alignment explanation
Indices: 26952444--26952520 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 38
26952434 CAATTACTTA
* *
26952444 AATTTTGATTTCAAATTATTTATTTTTGAATGTTATAT
1 AATTTTGATTTCAAAATATTTATTTTTGAATATTATAT
*
26952482 AATTTATGATTTTAAAATATTTATTTTTGAATATTATAT
1 AATTT-TGATTTCAAAATATTTATTTTTGAATATTATAT
26952521 GTTTTAATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
38 5 0.14
39 30 0.86
ACGTcount: A:0.35, C:0.01, G:0.06, T:0.57
Consensus pattern (38 bp):
AATTTTGATTTCAAAATATTTATTTTTGAATATTATAT
Found at i:26952976 original size:7 final size:7
Alignment explanation
Indices: 26952964--26953041 Score: 52
Period size: 7 Copynumber: 10.9 Consensus size: 7
26952954 ATTAATTAAT
26952964 CTAAACC
1 CTAAACC
26952971 CTAAACCC
1 CTAAA-CC
*
26952979 CT-AACT
1 CTAAACC
*
26952985 CTAATCTC
1 CTAAAC-C
*
26952993 CTAAACG
1 CTAAACC
26953000 CTAAACC
1 CTAAACC
*
26953007 CATAAAAC
1 C-TAAACC
26953015 CTAAACC
1 CTAAACC
*
26953022 C-CAACC
1 CTAAACC
26953028 CTTAAACC
1 C-TAAACC
*
26953036 ATAAAC
1 CTAAAC
26953042 ATAAACCATA
Statistics
Matches: 54, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
6 8 0.15
7 27 0.50
8 19 0.35
ACGTcount: A:0.42, C:0.38, G:0.01, T:0.18
Consensus pattern (7 bp):
CTAAACC
Found at i:26953048 original size:13 final size:14
Alignment explanation
Indices: 26953030--26953081 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
26953020 CCCCAACCCT
26953030 TAAACCATAAA-CA
1 TAAACCATAAACCA
26953043 TAAACCATAAAACCA
1 TAAACCAT-AAACCA
* * *
26953058 TAATCCATAATCCC
1 TAAACCATAAACCA
26953072 TAAACACATA
1 TAAAC-CATA
26953082 CTCCCTAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
13 8 0.25
14 11 0.34
15 13 0.41
ACGTcount: A:0.54, C:0.27, G:0.00, T:0.19
Consensus pattern (14 bp):
TAAACCATAAACCA
Found at i:26953051 original size:7 final size:7
Alignment explanation
Indices: 26953030--26953081 Score: 52
Period size: 7 Copynumber: 7.3 Consensus size: 7
26953020 CCCCAACCCT
26953030 TAAACCA
1 TAAACCA
26953037 TAAA-CA
1 TAAACCA
26953043 TAAACCA
1 TAAACCA
26953050 TAAAACCA
1 T-AAACCA
*
26953058 TAATCCA
1 TAAACCA
* *
26953065 TAATCCC
1 TAAACCA
26953072 TAAACACA
1 TAAAC-CA
26953080 TA
1 TA
26953082 CTCCCTAAAC
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
6 6 0.16
7 22 0.58
8 10 0.26
ACGTcount: A:0.54, C:0.27, G:0.00, T:0.19
Consensus pattern (7 bp):
TAAACCA
Found at i:26953302 original size:41 final size:41
Alignment explanation
Indices: 26953207--26953402 Score: 288
Period size: 41 Copynumber: 4.8 Consensus size: 41
26953197 ATTGCTAGAA
* * *
26953207 CATTAGCGGCGCTTCTTCAAAAACACCGCTAAAGCCT-AAG
1 CATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCTCGAG
* *
26953247 CATTAGCGACGCTTTTCCAAAAACGCCGCTAAAGCCTCGAG
1 CATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCTCGAG
* *
26953288 CATTAGCGGCGCTTTTTCGAAAACGCCGCTAAAGCCCCGAG
1 CATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCTCGAG
* *
26953329 CATTAGTGGCGCTTTTTCGAAAACGCCGCTAAAGCAC-CGAG
1 CATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGC-CTCGAG
26953370 CATTAGCGGCGCTTTTTCAAAAACGCCGCTAAA
1 CATTAGCGGCGCTTTTTCAAAAACGCCGCTAAA
26953403 AACCCCAAAA
Statistics
Matches: 142, Mismatches: 12, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
40 33 0.23
41 108 0.76
42 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.21
Consensus pattern (41 bp):
CATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCTCGAG
Found at i:26953538 original size:40 final size:40
Alignment explanation
Indices: 26953509--26953626 Score: 182
Period size: 40 Copynumber: 3.0 Consensus size: 40
26953499 CGTTTTCCAA
*
26953509 AAAGCACCGCTAATGCTCGATCTTTAGCGGCGTTTTTTGG
1 AAAGCGCCGCTAATGCTCGATCTTTAGCGGCGTTTTTTGG
* *
26953549 AAAGCGCCGCTAATGCTCGATCTTTAGAGGCATTTTTTGG
1 AAAGCGCCGCTAATGCTCGATCTTTAGCGGCGTTTTTTGG
* * *
26953589 AAAGCGCCGCTAATGCTTGATTTTTAGCGGTGTTTTTT
1 AAAGCGCCGCTAATGCTCGATCTTTAGCGGCGTTTTTT
26953627 TATCCAAACG
Statistics
Matches: 70, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.20, C:0.19, G:0.25, T:0.36
Consensus pattern (40 bp):
AAAGCGCCGCTAATGCTCGATCTTTAGCGGCGTTTTTTGG
Found at i:26958457 original size:29 final size:28
Alignment explanation
Indices: 26958398--26958490 Score: 100
Period size: 29 Copynumber: 3.3 Consensus size: 28
26958388 TATATGTAAT
* *
26958398 TTAAAATATTTAAATAAGTTTAAATAAA
1 TTAAAATATTAAAATAAGTTGAAATAAA
*
26958426 TTAACAATATTAAAATAAGTTGAAATGAA
1 TTAA-AATATTAAAATAAGTTGAAATAAA
* * *
26958455 TTAAAGATGTTAAAAT-ATTTGAAAGAAA
1 TTAAA-ATATTAAAATAAGTTGAAATAAA
26958483 -TAAAATAT
1 TTAAAATAT
26958491 CTATATAATA
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
26 3 0.05
27 4 0.07
28 14 0.25
29 34 0.62
ACGTcount: A:0.56, C:0.01, G:0.09, T:0.34
Consensus pattern (28 bp):
TTAAAATATTAAAATAAGTTGAAATAAA
Found at i:26960405 original size:44 final size:44
Alignment explanation
Indices: 26960307--26960556 Score: 120
Period size: 44 Copynumber: 5.8 Consensus size: 44
26960297 TAATATCTTC
* *
26960307 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTATTGGCTTT
1 AGTCTGCTCCACTGCAACTTCAGGGAAATAAGACTATTGGATTT
* * * * * *
26960351 AATATACTCCACTGCAGCTTCAGGGAAATAAGATTGATT-TATTT
1 AGTCTGCTCCACTGCAACTTCAGGGAAATAAGACT-ATTGGATTT
* * * * *
26960395 GGTCTGCTCCATTGCAACTTTA-GGAAGATAAAAC--TT-GA-TG
1 AGTCTGCTCCACTGCAACTTCAGGGAA-ATAAGACTATTGGATTT
* * ** * * * *
26960435 CGATCTGCTCTACTATAACTTCAGAGAGATAAGATCT-GTGGTTTT
1 AG-TCTGCTCCACTGCAACTTCAGGGAAATAAGA-CTATTGGATTT
* * * * * *
26960480 AATCCGCACCACTGCAACTTCAGGGAGATAGGATTATTGG-TTT
1 AGTCTGCTCCACTGCAACTTCAGGGAAATAAGACTATTGGATTT
* * * *
26960523 CAATCTGCTCCGCTGCAACTTCAAGGAGATAAGA
1 -AGTCTGCTCCACTGCAACTTCAGGGAAATAAGA
26960557 TTCGCCATCT
Statistics
Matches: 149, Mismatches: 47, Indels: 20
0.69 0.22 0.09
Matches are distributed among these distances:
40 2 0.01
41 23 0.15
42 3 0.02
43 9 0.06
44 108 0.72
45 4 0.03
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (44 bp):
AGTCTGCTCCACTGCAACTTCAGGGAAATAAGACTATTGGATTT
Found at i:26960572 original size:45 final size:45
Alignment explanation
Indices: 26960521--26960653 Score: 142
Period size: 45 Copynumber: 3.0 Consensus size: 45
26960511 GATTATTGGT
26960521 TTCAATCTGCTCCGCTGCAACTTCAAGGAGATAAGATTCGCCATC
1 TTCAATCTGCTCCGCTGCAACTTCAAGGAGATAAGATTCGCCATC
* ** * *****
26960566 TTCAATCCGCTCCATTGCAACTTCAAGGAGATAGGATT-ATTGGC
1 TTCAATCTGCTCCGCTGCAACTTCAAGGAGATAAGATTCGCCATC
* * * *
26960610 TTCAATCTGCTCCGCTGTAACTTCAGGGAGATGAGATCCGCCAT
1 TTCAATCTGCTCCGCTGCAACTTCAAGGAGATAAGATTCGCCAT
26960654 AATTTGTAGC
Statistics
Matches: 65, Mismatches: 22, Indels: 2
0.73 0.25 0.02
Matches are distributed among these distances:
44 31 0.48
45 34 0.52
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (45 bp):
TTCAATCTGCTCCGCTGCAACTTCAAGGAGATAAGATTCGCCATC
Found at i:26960599 original size:89 final size:89
Alignment explanation
Indices: 26960480--26960653 Score: 276
Period size: 89 Copynumber: 2.0 Consensus size: 89
26960470 CTGTGGTTTT
* *
26960480 AATCCGCACCACTGCAACTTCAGGGAGATAGGATTATTGGTTTCAATCTGCTCCGCTGCAACTTC
1 AATCCGCACCACTGCAACTTCAAGGAGATAGGATTATTGGCTTCAATCTGCTCCGCTGCAACTTC
*
26960545 AAGGAGATAAGATTCGCCATCTTC
66 AAGGAGATAAGATCCGCCATCTTC
* * *
26960569 AATCCGCTCCATTGCAACTTCAAGGAGATAGGATTATTGGCTTCAATCTGCTCCGCTGTAACTTC
1 AATCCGCACCACTGCAACTTCAAGGAGATAGGATTATTGGCTTCAATCTGCTCCGCTGCAACTTC
* *
26960634 AGGGAGATGAGATCCGCCAT
66 AAGGAGATAAGATCCGCCAT
26960654 AATTTGTAGC
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
89 77 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.27
Consensus pattern (89 bp):
AATCCGCACCACTGCAACTTCAAGGAGATAGGATTATTGGCTTCAATCTGCTCCGCTGCAACTTC
AAGGAGATAAGATCCGCCATCTTC
Found at i:26960632 original size:44 final size:44
Alignment explanation
Indices: 26960491--26960641 Score: 176
Period size: 44 Copynumber: 3.4 Consensus size: 44
26960481 ATCCGCACCA
* *
26960491 CTGCAACTTCAGGGAGATAGGATTATTGGTTTCAATCTGCTCCG
1 CTGCAACTTCAAGGAGATAGGATTATTGGCTTCAATCTGCTCCG
* ***** * *
26960535 CTGCAACTTCAAGGAGATAAGATTCGCCATCTTCAATCCGCTCCA
1 CTGCAACTTCAAGGAGATAGGATT-ATTGGCTTCAATCTGCTCCG
*
26960580 TTGCAACTTCAAGGAGATAGGATTATTGGCTTCAATCTGCTCCG
1 CTGCAACTTCAAGGAGATAGGATTATTGGCTTCAATCTGCTCCG
* *
26960624 CTGTAACTTCAGGGAGAT
1 CTGCAACTTCAAGGAGAT
26960642 GAGATCCGCC
Statistics
Matches: 84, Mismatches: 22, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
44 50 0.60
45 34 0.40
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (44 bp):
CTGCAACTTCAAGGAGATAGGATTATTGGCTTCAATCTGCTCCG
Done.