genome.fa.s2.2.7.7.80.10.50.1000.88.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Length:  48586650

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   

This is table  88  of  145  ( 17348 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29398746--29398884	69	2.0	69	95	0	251	45	4	2	47	1.37
29399040--29399085	8	6.2	8	80	19	64	58	15	0	26	1.37
29399048--29399141	20	4.7	20	83	8	129	53	14	1	30	1.49
29399095--29399323	9	26.1	9	65	20	85	49	18	1	30	1.58
29399101--29399323	16	13.8	16	65	25	71	49	18	1	30	1.56
29399095--29399223	25	5.2	25	73	13	115	48	19	1	30	1.58
29399031--29399175	61	2.4	59	81	13	147	51	15	1	31	1.53
29399235--29399290	25	2.2	25	87	6	78	53	19	1	25	1.55
29400791--29401015	43	5.3	43	88	1	283	25	20	29	24	1.99
29401280--29401337	29	1.9	31	82	10	75	56	0	1	41	1.09
29401326--29401442	10	12.1	10	67	16	59	64	2	5	28	1.28
29401326--29401426	29	3.5	28	74	12	89	64	2	4	27	1.29
29401610--29401653	18	2.5	17	78	10	52	27	4	0	68	1.09
29401646--29401692	19	2.5	20	82	10	62	34	2	2	61	1.20
29401815--29402040	92	2.5	92	82	3	262	37	11	18	31	1.87
29407584--29407615	14	2.1	16	88	11	50	21	9	6	62	1.47
29408102--29408152	27	2.0	27	92	7	88	50	0	5	43	1.26
29409018--29409140	43	2.9	42	85	4	158	19	19	28	32	1.96
29416256--29416288	16	2.0	17	94	5	59	42	6	0	51	1.26
29419747--29419799	28	2.0	27	85	14	74	41	16	0	41	1.49
29420037--29420117	41	1.9	43	85	5	112	33	20	7	38	1.81
29427767--29427792	3	8.7	3	100	0	52	30	69	0	0	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29436517--29436544	3	9.3	3	100	0	56	0	67	0	32	0.91
29436545--29436592	3	16.7	3	82	8	64	31	0	2	66	1.03
29437235--29437272	20	1.9	20	88	0	58	60	0	2	36	1.11
29440727--29441279	44	12.7	44	71	14	281	26	23	20	28	1.99
29440603--29441365	217	3.5	217	91	1	1194	27	23	20	28	1.99
29456602--29456721	36	3.6	34	67	17	97	47	5	3	44	1.41
29456591--29456718	65	1.9	67	93	3	224	44	4	3	47	1.39
29457980--29458011	15	2.1	15	100	0	64	37	12	6	43	1.68
29463791--29463915	63	2.0	63	96	0	232	23	26	22	28	1.99
29464383--29464507	62	2.0	63	83	10	159	41	1	4	52	1.29
29464690--29464729	16	2.5	16	95	0	71	27	27	7	37	1.84
29465995--29466085	46	2.0	47	84	6	123	36	8	18	36	1.82
29466019--29466098	23	3.5	21	71	20	63	33	7	17	41	1.78
29466067--29466128	32	1.9	32	83	6	81	27	9	17	45	1.80
29466333--29466740	162	2.5	162	81	2	505	38	12	22	26	1.90
29466333--29466737	54	7.5	54	85	1	454	38	12	22	26	1.90
29469098--29469282	45	4.1	45	94	2	320	27	22	16	33	1.95
29469098--29469282	91	2.1	88	93	3	316	27	22	16	33	1.95
29471448--29471850	41	9.9	41	84	3	440	19	22	30	27	1.98
29471448--29471850	123	3.3	122	83	2	502	19	22	30	27	1.98
29472448--29472492	21	2.1	21	87	0	63	22	0	42	35	1.54
29473995--29474134	56	2.4	57	94	4	237	19	7	22	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29477234--29477390	43	3.7	43	89	1	235	26	17	28	28	1.98
29478238--29478277	19	2.1	20	86	9	57	32	0	10	57	1.32
29484160--29484253	48	2.0	48	89	0	143	31	10	20	37	1.87
29484246--29484484	75	3.2	75	92	2	383	30	16	12	40	1.86
29484464--29484515	25	2.1	25	88	0	77	28	11	25	34	1.91
29486287--29486335	22	2.3	22	82	3	64	63	8	14	14	1.52
29489447--29489505	28	2.1	29	96	3	111	28	37	11	22	1.89
29490619--29490660	11	3.8	11	80	0	57	19	16	7	57	1.62
29490587--29490668	22	3.8	22	71	16	64	14	12	8	64	1.49
29490772--29490802	11	2.9	11	95	4	55	25	0	6	67	1.14
29491344--29491389	9	5.6	8	82	12	58	84	0	2	13	0.71
29494189--29494244	27	2.1	27	86	0	76	12	28	25	33	1.92
29494607--29494787	45	4.0	45	100	0	362	44	18	8	28	1.79
29506018--29506208	83	2.2	87	82	7	230	33	13	23	29	1.93
29512783--29512853	36	2.0	36	94	0	124	47	12	11	28	1.76
29518652--29518722	36	2.0	36	94	0	124	47	12	11	28	1.76
29522522--29522725	102	2.0	102	99	0	399	25	11	18	44	1.84
29526507--29526798	145	2.0	145	99	0	575	21	26	14	38	1.91
29533303--29533372	28	2.5	28	81	6	90	25	10	30	34	1.89
29540125--29540178	20	2.7	21	74	8	58	33	9	18	38	1.83
29549729--29549777	20	2.5	20	86	6	64	10	36	18	34	1.85
29549852--29549901	17	3.1	16	73	18	50	68	0	32	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29552858--29553150	145	2.0	146	95	0	534	35	20	8	35	1.84
29553129--29553166	20	1.9	20	88	0	58	52	10	2	34	1.50
29553587--29553695	57	1.9	55	90	3	173	46	11	16	24	1.81
29553811--29553885	17	4.2	16	73	20	60	76	1	5	17	1.05
29554222--29554251	7	4.3	7	100	0	60	30	13	43	13	1.82
29555048--29555108	11	5.5	11	87	12	81	24	34	0	40	1.55
29557095--29557330	51	4.7	49	77	9	208	25	16	26	31	1.97
29557092--29557368	101	2.7	101	79	6	301	26	15	25	31	1.96
29559266--29559291	7	3.7	7	100	0	52	26	0	15	57	1.38
29559946--29559988	18	2.4	18	92	0	68	16	27	9	46	1.77
29560251--29560290	21	1.9	21	85	10	55	30	40	20	10	1.85
29563662--29563952	126	2.3	126	88	2	433	27	19	19	33	1.96
29563981--29564006	7	3.7	7	100	0	52	42	42	0	15	1.47
29565086--29565130	22	2.0	22	86	0	63	20	8	2	68	1.27
29566854--29566898	22	2.0	22	86	0	63	20	8	2	68	1.27
29576430--29576490	32	1.9	32	100	0	122	39	4	27	27	1.77
29587612--29587681	30	2.3	30	82	4	97	32	12	27	27	1.93
29594275--29594348	31	2.4	31	90	2	114	41	13	24	20	1.88
29594329--29594513	30	6.2	30	71	9	94	39	12	25	22	1.90
29594456--29594511	29	1.9	29	88	0	85	37	16	30	16	1.90
29594275--29594505	119	1.9	120	86	0	329	38	13	26	21	1.90
29598428--29598467	14	2.9	14	84	0	53	32	7	17	42	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29598436--29598502	35	1.9	35	84	3	91	32	8	11	46	1.72
29604869--29604912	21	2.1	21	87	8	63	52	9	0	38	1.33
29605978--29606359	42	9.1	42	86	1	509	36	23	19	20	1.95
29605978--29606359	125	3.0	124	85	3	523	36	23	19	20	1.95
29609764--29609812	23	2.1	23	92	7	82	36	24	14	24	1.93
29613186--29613317	42	3.1	41	82	2	156	27	17	13	41	1.87
29613244--29613340	42	2.3	42	83	0	113	28	18	13	39	1.89
29613360--29613510	43	3.5	42	80	1	158	21	16	21	41	1.91
29616357--29616389	15	2.2	15	100	0	66	15	6	0	78	0.93
29617913--29617959	21	2.2	22	92	3	78	21	38	19	21	1.94
29633322--29633381	30	2.0	30	100	0	120	36	23	10	30	1.87
29634800--29634847	18	2.7	18	87	6	62	43	0	6	50	1.27
29636675--29636699	7	3.6	7	100	0	50	40	0	0	60	0.97
29639026--29639059	13	2.8	12	91	8	52	79	0	0	20	0.73
29639299--29639340	16	2.7	15	82	10	57	7	40	30	21	1.80
29651755--29651965	44	4.9	44	74	11	184	31	18	21	28	1.97
29651764--29652046	129	2.2	129	90	0	431	31	17	19	30	1.95
29658073--29658268	39	5.0	39	82	0	230	44	19	4	31	1.71
29658070--29658268	78	2.6	78	85	0	272	43	19	4	32	1.71
29662180--29662261	41	2.0	41	85	0	110	19	21	28	30	1.98
29664238--29664281	22	2.0	23	95	4	81	36	18	9	36	1.82
29669315--29669371	20	2.8	20	81	0	69	36	22	31	8	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29673598--29673708	42	2.7	42	88	2	154	20	21	21	36	1.96
29676385--29676426	19	2.2	19	86	0	57	23	2	45	28	1.66
29677484--29677530	21	2.2	21	84	0	58	51	34	0	14	1.43
29677496--29677567	21	3.4	21	76	0	63	44	43	0	12	1.42
29677822--29677852	15	2.0	16	93	6	55	38	45	0	16	1.47
29678219--29678324	41	2.6	41	88	5	160	31	26	24	17	1.97
29678315--29678491	93	1.9	92	87	1	255	25	27	22	23	2.00
29683447--29683500	19	2.8	19	83	10	58	37	0	9	53	1.33
29684934--29684989	15	3.5	15	71	19	51	48	1	1	48	1.22
29690241--29690274	2	17.0	2	100	0	68	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145