Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 88 of 145
Found at i:29398824 original size:69 final size:69
Alignment explanation
Indices: 29398746--29398884 Score: 251
Period size: 69 Copynumber: 2.0 Consensus size: 69
29398736 TTTTATTGTC
*
29398746 AATAAATTTTATAATTTTAAAAATAATTGTAAATGTTATTTTTTAAATATTAAAACCTATATTTT
1 AATAAATTTTATAATTTTAAAAATAATTGTAAATGATATTTTTTAAATATTAAAACCTATATTTT
29398811 CAAT
66 CAAT
*
29398815 AATAAATTTTATAATTTTAAAAATAATTGTAAATGATATTTTTTAAATATTAACACCTATATTTT
1 AATAAATTTTATAATTTTAAAAATAATTGTAAATGATATTTTTTAAATATTAAAACCTATATTTT
*
29398880 TAAT
66 CAAT
29398884 A
1 A
29398885 TATCACCCCA
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.45, C:0.04, G:0.03, T:0.47
Consensus pattern (69 bp):
AATAAATTTTATAATTTTAAAAATAATTGTAAATGATATTTTTTAAATATTAAAACCTATATTTT
CAAT
Found at i:29399053 original size:8 final size:8
Alignment explanation
Indices: 29399040--29399085 Score: 64
Period size: 8 Copynumber: 6.2 Consensus size: 8
29399030 CATATAACTT
29399040 ACATAATA
1 ACATAATA
29399048 ACATAATA
1 ACATAATA
29399056 ACATAATA
1 ACATAATA
29399064 AC-T--T-
1 ACATAATA
29399068 ACATAATA
1 ACATAATA
29399076 ACATAATA
1 ACATAATA
29399084 AC
1 AC
29399086 TTATATATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
4 2 0.06
5 2 0.06
7 2 0.06
8 28 0.82
ACGTcount: A:0.59, C:0.15, G:0.00, T:0.26
Consensus pattern (8 bp):
ACATAATA
Found at i:29399056 original size:20 final size:20
Alignment explanation
Indices: 29399048--29399141 Score: 129
Period size: 20 Copynumber: 4.7 Consensus size: 20
29399038 TTACATAATA
29399048 ACATAATAACATAATAACTT
1 ACATAATAACATAATAACTT
29399068 ACATAATAACATAATAACTT
1 ACATAATAACATAATAACTT
* * *
29399088 ATAT-ATAAACTTGCATAACTT
1 ACATAAT-AACAT-AATAACTT
29399109 ACATAATAACATAATAACTT
1 ACATAATAACATAATAACTT
29399129 ACATAAT-ACATAA
1 ACATAATAACATAA
29399142 CTTTGATAAC
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
19 8 0.12
20 41 0.63
21 14 0.22
22 2 0.03
ACGTcount: A:0.53, C:0.15, G:0.01, T:0.31
Consensus pattern (20 bp):
ACATAATAACATAATAACTT
Found at i:29399113 original size:9 final size:9
Alignment explanation
Indices: 29399095--29399323 Score: 85
Period size: 9 Copynumber: 26.1 Consensus size: 9
29399085 CTTATATATA
*
29399095 AACTTGCAT
1 AACTTACAT
29399104 AACTTACAT
1 AACTTACAT
*
29399113 AA-TAACATAAT
1 AACTTAC---AT
29399124 AACTTACAT
1 AACTTACAT
29399133 AA--TACAT
1 AACTTACAT
**
29399140 AACTTTGAT
1 AACTTACAT
*
29399149 AACTAACAT
1 AACTTACAT
* *
29399158 TA--TACAC
1 AACTTACAT
29399165 AACTTACAT
1 AACTTACAT
*
29399174 AACATACACTT
1 AACTTACA--T
*
29399185 AA-ATACAT
1 AACTTACAT
29399193 AACTTACAT
1 AACTTACAT
*
29399202 AACTTAAAT
1 AACTTACAT
*
29399211 AA--TACAC
1 AACTTACAT
29399218 AACTTA-ATT
1 AACTTACA-T
*
29399227 AATATTATACAT
1 -A-ACT-TACAT
*
29399239 AACATACAT
1 AACTTACAT
29399248 AA--TACAT
1 AACTTACAT
*
29399255 AA-TACACAT
1 AACT-TACAT
29399264 AACTTACAT
1 AACTTACAT
*
29399273 -A-GTACAT
1 AACTTACAT
*
29399280 AACTAACAT
1 AACTTACAT
*
29399289 AA--TACAC
1 AACTTACAT
*
29399296 AACTTACGT
1 AACTTACAT
*
29399305 AACTTAAAT
1 AACTTACAT
29399314 AACTTACAT
1 AACTTACAT
29399323 A
1 A
29399324 NNNNNNNNNN
Statistics
Matches: 161, Mismatches: 34, Indels: 50
0.66 0.14 0.20
Matches are distributed among these distances:
7 33 0.20
8 9 0.06
9 94 0.58
10 8 0.05
11 10 0.06
12 6 0.04
13 1 0.01
ACGTcount: A:0.49, C:0.19, G:0.02, T:0.30
Consensus pattern (9 bp):
AACTTACAT
Found at i:29399143 original size:16 final size:16
Alignment explanation
Indices: 29399101--29399323 Score: 71
Period size: 16 Copynumber: 13.8 Consensus size: 16
29399091 TATAAACTTG
29399101 CATAACTTACATAATAA
1 CATAACTTACATAAT-A
29399118 CATAATAACTTACATAATA
1 C---ATAACTTACATAATA
*
29399137 CATAACTT---TGAT-
1 CATAACTTACATAATA
* *
29399149 ---AACTAACATTATA
1 CATAACTTACATAATA
*
29399162 CACAACTTACATAACATA
1 CATAACTTACAT-A-ATA
*
29399180 CACTTAA-ATACATAACTTA
1 CA--TAACTTACATAA--TA
*
29399199 CATAACTTAAATAATA
1 CATAACTTACATAATA
*
29399215 CACAACTTA-AT--TA
1 CATAACTTACATAATA
*
29399228 -AT-ATTATACATAACATA
1 CATAACT-TACAT-A-ATA
29399245 CATAA--TACATAATACA
1 CATAACTTACATAAT--A
*
29399261 CATAACTTACATAGTA
1 CATAACTTACATAATA
*
29399277 CATAACTAACATAATA
1 CATAACTTACATAATA
* *
29399293 CACAACTTACGTAACTTA
1 CATAACTTACATAA--TA
*
29399311 AATAACTTACATA
1 CATAACTTACATA
29399324 NNNNNNNNNN
Statistics
Matches: 154, Mismatches: 21, Indels: 61
0.65 0.09 0.26
Matches are distributed among these distances:
9 4 0.03
11 2 0.01
12 6 0.04
13 7 0.05
14 2 0.01
15 3 0.02
16 62 0.40
17 7 0.05
18 33 0.21
19 12 0.08
20 16 0.10
ACGTcount: A:0.50, C:0.19, G:0.01, T:0.30
Consensus pattern (16 bp):
CATAACTTACATAATA
Found at i:29399151 original size:25 final size:25
Alignment explanation
Indices: 29399095--29399223 Score: 115
Period size: 25 Copynumber: 5.2 Consensus size: 25
29399085 CTTATATATA
*
29399095 AACTTGCATAACTTACATAATA-AC
1 AACTTACATAACTTACATAATACAC
*
29399119 -A--TA-ATAACTTACATAATACAT
1 AACTTACATAACTTACATAATACAC
** * *
29399140 AACTTTGATAACTAACATTATACAC
1 AACTTACATAACTTACATAATACAC
* *
29399165 AACTTACATAACATACACTTAAATACAT
1 AACTTACATAACTTACA--T-AATACAC
*
29399193 AACTTACATAACTTAAATAATACAC
1 AACTTACATAACTTACATAATACAC
29399218 AACTTA
1 AACTTA
29399224 ATTAATATTA
Statistics
Matches: 82, Mismatches: 15, Indels: 15
0.73 0.13 0.13
Matches are distributed among these distances:
20 15 0.18
21 2 0.02
22 1 0.01
23 1 0.01
24 1 0.01
25 40 0.49
26 1 0.01
27 1 0.01
28 20 0.24
ACGTcount: A:0.49, C:0.19, G:0.02, T:0.30
Consensus pattern (25 bp):
AACTTACATAACTTACATAATACAC
Found at i:29399169 original size:61 final size:59
Alignment explanation
Indices: 29399031--29399175 Score: 147
Period size: 61 Copynumber: 2.4 Consensus size: 59
29399021 AATTTGTAAC
* *
29399031 ATAT-AACTTACATAA-TAACATAATAACATAATAACTTACATAATAACATAATAACTTAT
1 ATATAAACTTACACAACTTACATAATAACATAATAACTTACATAATAACATAAT-A-TTAT
* *
29399090 ATATAAACTTGCATAACTTACATAATAACATAATAACTTACATAAT-ACATAACT-TTGAT
1 ATATAAACTTACACAACTTACATAATAACATAATAACTTACATAATAACATAA-TATT-AT
*
29399149 A-ACTAACATTATACACAACTTACATAA
1 ATA-TAA-ACT-TACACAACTTACATAA
29399176 CATACACTTA
Statistics
Matches: 74, Mismatches: 5, Indels: 12
0.81 0.05 0.13
Matches are distributed among these distances:
58 3 0.04
59 10 0.14
60 18 0.24
61 43 0.58
ACGTcount: A:0.51, C:0.16, G:0.01, T:0.32
Consensus pattern (59 bp):
ATATAAACTTACACAACTTACATAATAACATAATAACTTACATAATAACATAATATTAT
Found at i:29399250 original size:25 final size:25
Alignment explanation
Indices: 29399235--29399290 Score: 78
Period size: 25 Copynumber: 2.2 Consensus size: 25
29399225 TTAATATTAT
29399235 ACATAACATACATAATACATAATAC
1 ACATAACATACATAATACATAATAC
* *
29399260 ACATAACTTACATAGTACATAACTA-
1 ACATAACATACATAATACATAA-TAC
29399285 ACATAA
1 ACATAA
29399291 TACACAACTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 26 0.93
26 2 0.07
ACGTcount: A:0.54, C:0.20, G:0.02, T:0.25
Consensus pattern (25 bp):
ACATAACATACATAATACATAATAC
Found at i:29400862 original size:43 final size:43
Alignment explanation
Indices: 29400791--29401015 Score: 283
Period size: 43 Copynumber: 5.3 Consensus size: 43
29400781 CATCAAACAA
* *
29400791 TAGCCGCGTTTGTGAGGAAA-GCGCCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTGTGA-TAAAGGCGCCGCTAAAGAACATGACCTT
* * * *
29400834 TAGCGGCGTTTGTTATAGAGGCGTCGCTAAAGAACGTGACCTT
1 TAGCGGCGTTTGTGATAAAGGCGCCGCTAAAGAACATGACCTT
* *
29400877 TAGCGGCGTTTGTTATAGAGGCGCCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTGTGATAAAGGCGCCGCTAAAGAACATGACCTT
* * *
29400920 TAGCGGCGTTTGTGACAAAGGCGCCGCTAAAGAACATGATCAT
1 TAGCGGCGTTTGTGATAAAGGCGCCGCTAAAGAACATGACCTT
** * **
29400963 TAGCGGCGTTTGTGGGAAATGC-CCGCTAAAGAACATGGTCTT
1 TAGCGGCGTTTGTGATAAAGGCGCCGCTAAAGAACATGACCTT
29401005 TAGCGGCGTTT
1 TAGCGGCGTTT
29401016 ATAAAAATAA
Statistics
Matches: 163, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
42 31 0.19
43 132 0.81
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (43 bp):
TAGCGGCGTTTGTGATAAAGGCGCCGCTAAAGAACATGACCTT
Found at i:29401332 original size:30 final size:31
Alignment explanation
Indices: 29401280--29401337 Score: 75
Period size: 29 Copynumber: 1.9 Consensus size: 31
29401270 AAAGTTATAT
29401280 AAATTATTAAATTTTAAT-AAAAATATAAAG
1 AAATTATTAAATTTTAATAAAAAATATAAAG
* *
29401310 AAATT-TTTAATTTTATTAAAAAAATATA
1 AAATTATTAAATTTTAAT-AAAAAATATA
29401338 CAAATCATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 10 0.42
30 5 0.21
31 9 0.38
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (31 bp):
AAATTATTAAATTTTAATAAAAAATATAAAG
Found at i:29401357 original size:10 final size:10
Alignment explanation
Indices: 29401326--29401442 Score: 59
Period size: 10 Copynumber: 12.1 Consensus size: 10
29401316 TTAATTTTAT
*
29401326 TAAAAAAATA
1 TAAAAAATTA
* *
29401336 T-ACAAATCA
1 TAAAAAATTA
29401345 TAAAAAATTA
1 TAAAAAATTA
*
29401355 TAAAATATT-
1 TAAAAAATTA
*
29401364 T-AGAAATATA
1 TAAAAAAT-TA
*
29401374 GAAAAAATTA
1 TAAAAAATTA
*
29401384 T--AAAATTG
1 TAAAAAATTA
* * *
29401392 TATAAAGTCA
1 TAAAAAATTA
29401402 TAAGAAAATTA
1 TAA-AAAATTA
*
29401413 TAAAAAAATA
1 TAAAAAATTA
29401423 TAAAGAAA-TA
1 TAAA-AAATTA
29401433 T-AAAAATTA
1 TAAAAAATTA
29401442 T
1 T
29401443 TGTGCCAAAA
Statistics
Matches: 79, Mismatches: 19, Indels: 19
0.68 0.16 0.16
Matches are distributed among these distances:
8 14 0.18
9 13 0.16
10 36 0.46
11 16 0.20
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (10 bp):
TAAAAAATTA
Found at i:29401358 original size:29 final size:28
Alignment explanation
Indices: 29401326--29401426 Score: 89
Period size: 29 Copynumber: 3.5 Consensus size: 28
29401316 TTAATTTTAT
29401326 TAAAAAAATATACAAATCATAAAAAATTA
1 TAAAAAAATATA-AAATCATAAAAAATTA
* *
29401355 T-AAAATATTTAGAAAT-ATAGAAAAAATTA
1 TAAAAAAATATA-AAATCAT--AAAAAATTA
*** *
29401384 TAAAATTGTATAAAGTCATAAGAAAATTA
1 TAAAAAAATATAAAATCATAA-AAAATTA
29401413 TAAAAAAATATAAA
1 TAAAAAAATATAAA
29401427 GAAATATAAA
Statistics
Matches: 57, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
27 2 0.04
28 14 0.25
29 32 0.56
30 9 0.16
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (28 bp):
TAAAAAAATATAAAATCATAAAAAATTA
Found at i:29401633 original size:18 final size:17
Alignment explanation
Indices: 29401610--29401653 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
29401600 GTTAAAGGGC
29401610 ATTTTTATACATTTTATA
1 ATTTTTATA-ATTTTATA
* *
29401628 ATTTTTTCTAATTTTTTA
1 A-TTTTTATAATTTTATA
29401646 ATTTTTAT
1 ATTTTTAT
29401654 TAAAATTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 6 0.27
18 9 0.41
19 7 0.32
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTTTATAATTTTATA
Found at i:29401668 original size:19 final size:20
Alignment explanation
Indices: 29401646--29401692 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
29401636 TAATTTTTTA
29401646 ATTTTTATTAAAATTTAAT-
1 ATTTTTATTAAAATTTAATG
* *
29401665 ATTTTTA-TAACATTTATTG
1 ATTTTTATTAAAATTTAATG
29401684 ATTTTTATT
1 ATTTTTATT
29401693 TTTATCATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 9 0.38
19 14 0.58
20 1 0.04
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (20 bp):
ATTTTTATTAAAATTTAATG
Found at i:29402006 original size:92 final size:92
Alignment explanation
Indices: 29401815--29402040 Score: 262
Period size: 92 Copynumber: 2.5 Consensus size: 92
29401805 GGCTTTTTTT
* * ** *
29401815 ATGCATTTTGATAGTTCAAGTATCCAATTGAGCGC---AAAAAAAAAGTAGGGGCTAATTGCTTA
1 ATGCATTTTGAAAGTTCAAGTATCCAATTGAGTGCAAAAAAAAAAAACAAGGGGCTAATGGCTTA
* * *
29401877 TTTTGAAAAATTTTGAGGGCATTTTTT
66 TTTTGAAAAAGTTTGAGGGCATTTCTG
* * * *
29401904 ATTCAATTTGAAAGTTCAAGTATCCAATTGAGTGCAAAAAAAAAAAACAACGGG-TCAATGGTTT
1 ATGCATTTTGAAAGTTCAAGTATCCAATTGAGTGCAAAAAAAAAAAACAAGGGGCT-AATGGCTT
* *
29401968 TTTTTGAAAAAGTTTGAGGGCCTTTCTG
65 ATTTTGAAAAAGTTTGAGGGCATTTCTG
* * *
29401996 ATGCATTTTGAAAGTTCAAGTACCCAATTAAGTGCAAAAACAAAA
1 ATGCATTTTGAAAGTTCAAGTATCCAATTGAGTGCAAAAAAAAAA
29402041 GGGCTAATTG
Statistics
Matches: 114, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
89 31 0.27
91 1 0.01
92 82 0.72
ACGTcount: A:0.38, C:0.12, G:0.19, T:0.32
Consensus pattern (92 bp):
ATGCATTTTGAAAGTTCAAGTATCCAATTGAGTGCAAAAAAAAAAAACAAGGGGCTAATGGCTTA
TTTTGAAAAAGTTTGAGGGCATTTCTG
Found at i:29407614 original size:14 final size:16
Alignment explanation
Indices: 29407584--29407615 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
29407574 CTACTCTTGG
29407584 TTTAACATTCATTTGT
1 TTTAACATTCATTTGT
29407600 TTTAA-ATTC-TTTGT
1 TTTAACATTCATTTGT
29407614 TT
1 TT
29407616 CAATTTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 7 0.44
15 4 0.25
16 5 0.31
ACGTcount: A:0.22, C:0.09, G:0.06, T:0.62
Consensus pattern (16 bp):
TTTAACATTCATTTGT
Found at i:29408136 original size:25 final size:27
Alignment explanation
Indices: 29408102--29408152 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
29408092 ATATTATTAA
29408102 TATAATATA-TAA-ATGTTATAATAAG
1 TATAATATATTAATATGTTATAATAAG
29408127 TATAATATATTAATATGTTATAATAA
1 TATAATATATTAATATGTTATAATAA
29408153 ACATTAAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 9 0.38
26 3 0.12
27 12 0.50
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (27 bp):
TATAATATATTAATATGTTATAATAAG
Found at i:29409079 original size:43 final size:42
Alignment explanation
Indices: 29409018--29409140 Score: 158
Period size: 43 Copynumber: 2.9 Consensus size: 42
29409008 TCGATATGTG
29409018 TTTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGACTTGTA
1 TTTTCGTGTAAGA-CACGTCTGGGACGTTGGCATCGACTTGTA
* * *
29409061 TTTTCGTGTAAGATCACGTCTAGGATGTTGGCATCGACTTGTG
1 TTTTCGTGTAAGA-CACGTCTGGGACGTTGGCATCGACTTGTA
* *
29409104 TTTACGTGTAAGACCCTGTCTGGGACAG-TGGCATCGA
1 TTTTCGTGTAAGACAC-GTCTGGGAC-GTTGGCATCGA
29409141 TCTGTAAATA
Statistics
Matches: 70, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
42 2 0.03
43 67 0.96
44 1 0.01
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.33
Consensus pattern (42 bp):
TTTTCGTGTAAGACACGTCTGGGACGTTGGCATCGACTTGTA
Found at i:29416286 original size:16 final size:17
Alignment explanation
Indices: 29416256--29416288 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
29416246 ATTTGTGATA
29416256 ATTATTACTAATTTAAT
1 ATTATTACTAATTTAAT
29416273 ATTATTAC-AATTTAAT
1 ATTATTACTAATTTAAT
29416289 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (17 bp):
ATTATTACTAATTTAAT
Found at i:29419776 original size:26 final size:27
Alignment explanation
Indices: 29419747--29419799 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
29419737 TTTCTTTTTC
29419747 TATTTCTAA-AAATAAAT-TTCTCAACA
1 TATTTCTAATAAAT-AATCTTCTCAACA
29419773 TATTTCTAATTAAATAATCTTCTCAAC
1 TATTTCTAA-TAAATAATCTTCTCAAC
29419800 CAAATTCTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 9 0.38
27 3 0.12
28 12 0.50
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.42
Consensus pattern (27 bp):
TATTTCTAATAAATAATCTTCTCAACA
Found at i:29420082 original size:41 final size:43
Alignment explanation
Indices: 29420037--29420117 Score: 112
Period size: 41 Copynumber: 1.9 Consensus size: 43
29420027 TCATTTTGGA
* *
29420037 GAAAACCATAATTATTTCCAAGTG-TTT-CCATTTCTCCAATT
1 GAAAACCATAATCATTTCCAAATGATTTGCCATTTCTCCAATT
* *
29420078 GAAAACCATAATCATTTTCAAATGATTTGTCATTTCTCCA
1 GAAAACCATAATCATTTCCAAATGATTTGCCATTTCTCCA
29420118 TTTTTACCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 21 0.62
42 3 0.09
43 10 0.29
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.38
Consensus pattern (43 bp):
GAAAACCATAATCATTTCCAAATGATTTGCCATTTCTCCAATT
Found at i:29427775 original size:3 final size:3
Alignment explanation
Indices: 29427767--29427792 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
29427757 ACAAACTTCT
29427767 CCA CCA CCA CCA CCA CCA CCA CCA CC
1 CCA CCA CCA CCA CCA CCA CCA CCA CC
29427793 TCCGCCGCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.69, G:0.00, T:0.00
Consensus pattern (3 bp):
CCA
Found at i:29436525 original size:3 final size:3
Alignment explanation
Indices: 29436517--29436544 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
29436507 TTCTTTTTTA
29436517 CCT CCT CCT CCT CCT CCT CCT CCT CCT C
1 CCT CCT CCT CCT CCT CCT CCT CCT CCT C
29436545 ATTATTATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32
Consensus pattern (3 bp):
CCT
Found at i:29436551 original size:3 final size:3
Alignment explanation
Indices: 29436545--29436592 Score: 64
Period size: 3 Copynumber: 16.7 Consensus size: 3
29436535 CCTCCTCCTC
* *
29436545 ATT ATT ATT ATT ATT ATT ATT ATT ATT GTT ATT -TT ATT -TT AAT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
29436591 AT
1 AT
29436593 AATTTATTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
2 4 0.10
3 35 0.90
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:29437271 original size:20 final size:20
Alignment explanation
Indices: 29437235--29437272 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
29437225 TCATAAAATT
**
29437235 TTATAAAATTATTAAAATAA
1 TTATAAAATTAAGAAAATAA
29437255 TTATAAAATTAAGAAAAT
1 TTATAAAATTAAGAAAAT
29437273 TACATTTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.37
Consensus pattern (20 bp):
TTATAAAATTAAGAAAATAA
Found at i:29440830 original size:44 final size:44
Alignment explanation
Indices: 29440727--29441279 Score: 281
Period size: 44 Copynumber: 12.7 Consensus size: 44
29440717 GCTTCAACCC
* * ** **
29440727 GCTCCTCTGCCACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTT-AGTCT
*
29440772 GC-CTCACTACAACTTCA-GGAGGATAAGACTTGCTTTCTTAGTCT
1 GCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCTTTCTTAGTCT
* * * *
29440816 GCTCCACTGCAACTTCAGGGAGATAAGACTAG-ATGC-GA-TCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTAGTCT
* * * ** * * *
29440857 GCT-CTCTACAACTTCAGAGAGATAAGATCCAAG-GTT-TTAATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGA--CTTGCTTTCTTAGTCT
* **
29440900 GCTCCACTGCAACTTCAGGGAGATAAGATTATCGGC--T-TTAACCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACT-T--GCTTTCTTAGTCT
* * **
29440944 GCTCCACTGTAACTT-ATGGGAGATAAGATTTGCCATCTTCAGTCT
1 GCTCCACTGCAACTTCA-GGGAGATAAGACTTGCTTTCTT-AGTCT
*
29440989 GC-CTCACTGCAACTTCA-GGAGGATAAGACTTGCTTACTTAGTCT
1 GCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCTTTCTTAGTCT
* * * * * *
29441033 GCTCCATTGCAACTTCAGGGAGATAAGGCTAG-ATGC-GA-TCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTAGTCT
* * ** * * * *
29441074 ACT-CTCTGCAACTTCAAAGAGATAAGATCTAAG-GTT-TTAATCC
1 GCTCCACTGCAACTTCAGGGAGATAAGA-CT-TGCTTTCTTAGTCT
* * * **
29441117 GCTCCACTGCAACTTCAGGGAGATAGGA-TT-ATTGGCATTAACCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCTT-TC-TTAGTCT
* * * ** *
29441161 GCTCTACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCATTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTT-AGTCT
*
29441206 GC-CTCACTGCAACTTCA-GGAGGATAAGACTTGCTTACTTAGTCT
1 GCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCTTTCTTAGTCT
*
29441250 GCTTCACTGCAACTTCAGGGAGATAAGACT
1 GCTCCACTGCAACTTCAGGGAGATAAGACT
29441280 AGATGTGATC
Statistics
Matches: 390, Mismatches: 79, Indels: 79
0.71 0.14 0.14
Matches are distributed among these distances:
40 40 0.10
41 16 0.04
42 12 0.03
43 16 0.04
44 205 0.53
45 100 0.26
46 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (44 bp):
GCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTAGTCT
Found at i:29441007 original size:217 final size:217
Alignment explanation
Indices: 29440603--29441365 Score: 1194
Period size: 217 Copynumber: 3.5 Consensus size: 217
29440593 CTTCAATCTA
* * * * *
29440603 CTCCTCTGCAACCTCAGAGAGATAAGACT---TGCGATCTGCTCTTTGCAACTTCAGGGAGATAA
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAA
* * * *
29440665 GATCCTAA-GTTTTAATCCGCTCCACTGAAACTTCAGAGAGATAGGATTATCGGCTTCAACCCGC
66 GATCC-AAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAACCTGC
* ** * *
29440729 TCCTCTGCCACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGG
130 TCCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGG
*
29440794 ATAAGACTTGCTTTCTTAGTCTG
195 ATAAGACTTGCTTACTTAGTCTG
*
29440817 CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAA
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAA
*
29440882 GATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAAGATTATCGGCTTTAACCTGCT
66 GATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAACCTGCT
29440947 CCACTGTAACTT-ATGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGG
131 CCACTGTAACTTCA-GGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGG
29441011 ATAAGACTTGCTTACTTAGTCTG
195 ATAAGACTTGCTTACTTAGTCTG
* * * *
29441034 CTCCATTGCAACTTCAGGGAGATAAGGCTAGATGCGATCTACTCTCTGCAACTTCAAAGAGATAA
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAA
* * *
29441099 GATCTAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCATTAACCTGCT
66 GATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAACCTGCT
* *
29441164 CTACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCATTCTGCCTCACTGCAACTTCAGGAGGA
131 CCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGA
29441229 TAAGACTTGCTTACTTAGTCTG
196 TAAGACTTGCTTACTTAGTCTG
* * *
29441251 CTTCACTGCAACTTCAGGGAGATAAGACTAGATGTGATCTGCTCTCTGTAACTTCAGAGAGATAA
1 CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAA
* *
29441316 GATCCAAGGTTTTAATCCGCTCCACTGTAACTTCATGGAGATAGGATTAT
66 GATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTAT
29441366 TGGCCACTGA
Statistics
Matches: 505, Mismatches: 38, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
214 26 0.05
216 3 0.01
217 475 0.94
218 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (217 bp):
CTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAA
GATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAACCTGCT
CCACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGA
TAAGACTTGCTTACTTAGTCTG
Found at i:29456642 original size:36 final size:34
Alignment explanation
Indices: 29456602--29456721 Score: 97
Period size: 36 Copynumber: 3.6 Consensus size: 34
29456592 TATATTTTTT
*
29456602 ATATATAAAATATTTACAAATAACATAATTTAGTGC
1 ATATATAAAA-ATTTA-AAATAATATAATTTAGTGC
** **
29456638 ATATATAAAAATTTAATTTTTTAT-ATTT--T--
1 ATATATAAAAATTTAAAATAATATAATTTAGTGC
* * *
29456667 TTATTTAAAATATTTACACATAATATAATTTAGTGC
1 ATATATAAAA-ATTTA-AAATAATATAATTTAGTGC
29456703 ATATATAAAAATTTAAAAT
1 ATATATAAAAATTTAAAAT
29456722 TATCAGTATG
Statistics
Matches: 63, Mismatches: 14, Indels: 16
0.68 0.15 0.17
Matches are distributed among these distances:
29 8 0.13
30 5 0.08
31 6 0.10
32 4 0.06
33 4 0.06
34 8 0.13
35 10 0.16
36 18 0.29
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.44
Consensus pattern (34 bp):
ATATATAAAAATTTAAAATAATATAATTTAGTGC
Found at i:29456695 original size:65 final size:67
Alignment explanation
Indices: 29456591--29456718 Score: 224
Period size: 65 Copynumber: 1.9 Consensus size: 67
29456581 TTTAATAAAG
29456591 TTATATTTTTTATATATAAAATATTTACAAATAACATAATTTAGTGCATATATAAAAATTTAATT
1 TTATATTTTTTATATATAAAATATTTACAAATAACATAATTTAGTGCATATATAAAAATTTAATT
29456656 TT
66 TT
* *
29456658 TTATATTTTTTAT-T-TAAAATATTTACACATAATATAATTTAGTGCATATATAAAAATTTAA
1 TTATATTTTTTATATATAAAATATTTACAAATAACATAATTTAGTGCATATATAAAAATTTAA
29456719 AATTATCAGT
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
65 45 0.76
66 1 0.02
67 13 0.22
ACGTcount: A:0.45, C:0.05, G:0.03, T:0.48
Consensus pattern (67 bp):
TTATATTTTTTATATATAAAATATTTACAAATAACATAATTTAGTGCATATATAAAAATTTAATT
TT
Found at i:29458000 original size:15 final size:15
Alignment explanation
Indices: 29457980--29458011 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
29457970 TATTAGACTG
29457980 AAATGCTTTACTATT
1 AAATGCTTTACTATT
29457995 AAATGCTTTACTATT
1 AAATGCTTTACTATT
29458010 AA
1 AA
29458012 GTTGTGCAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (15 bp):
AAATGCTTTACTATT
Found at i:29463874 original size:63 final size:63
Alignment explanation
Indices: 29463791--29463915 Score: 232
Period size: 63 Copynumber: 2.0 Consensus size: 63
29463781 CTGCCCGCAA
*
29463791 AGACATTCTTACACTCGCTTCCCTTGAGGTTAACCTTTCTAGCATAGAGCTAGGGAGCACTGG
1 AGACATTCTTACACCCGCTTCCCTTGAGGTTAACCTTTCTAGCATAGAGCTAGGGAGCACTGG
*
29463854 AGACATTCTTGCACCCGCTTCCCTTGAGGTTAACCTTTCTAGCATAGAGCTAGGGAGCACTG
1 AGACATTCTTACACCCGCTTCCCTTGAGGTTAACCTTTCTAGCATAGAGCTAGGGAGCACTG
29463916 TTACCGTCAA
Statistics
Matches: 60, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.28
Consensus pattern (63 bp):
AGACATTCTTACACCCGCTTCCCTTGAGGTTAACCTTTCTAGCATAGAGCTAGGGAGCACTGG
Found at i:29464480 original size:62 final size:63
Alignment explanation
Indices: 29464383--29464507 Score: 159
Period size: 62 Copynumber: 2.0 Consensus size: 63
29464373 TTATGTTATG
*
29464383 ATTTTTATTAATTCATATGTTAATAAAAATTATATTAAGA-ATGTTATTAAATTATATA-TATTT
1 ATTTTTATTAATTCATATGTTAATAAAAATTATATTAAAACATG--ATTAAATTATATATTATTT
* * *
29464446 ATTTTTATTTAATT-ATAT-TTAGTAATAATTATATTAAAACATGATTAAATTATTTATTATTT
1 ATTTTTA-TTAATTCATATGTTAATAAAAATTATATTAAAACATGATTAAATTATATATTATTT
29464508 TAAGAATAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
61 12 0.22
62 23 0.42
63 14 0.25
64 6 0.11
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.53
Consensus pattern (63 bp):
ATTTTTATTAATTCATATGTTAATAAAAATTATATTAAAACATGATTAAATTATATATTATTT
Found at i:29464711 original size:16 final size:16
Alignment explanation
Indices: 29464690--29464729 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
29464680 TGAATTGCTT
*
29464690 ATTACAGCTTTATTCC
1 ATTACAGCTCTATTCC
29464706 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
29464722 ATTACAGC
1 ATTACAGC
29464730 GAACCAAACG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.28, C:0.28, G:0.07, T:0.38
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:29466045 original size:46 final size:47
Alignment explanation
Indices: 29465995--29466085 Score: 123
Period size: 46 Copynumber: 2.0 Consensus size: 47
29465985 GAATGCAGCA
**
29465995 AACTGTATCTACAGAAATGTCG-AGAATTGTATTGTAGAA-TATTGTG
1 AACTGTATCTACAGAAACATCGCA-AATTGTATTGTAGAATTATTGTG
* *
29466041 AACTGTATTTACAGAAACATTGCAAATTGTATTGTAGAATTATTG
1 AACTGTATCTACAGAAACATCGCAAATTGTATTGTAGAATTATTG
29466086 CAATCTGTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
46 33 0.85
47 6 0.15
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.36
Consensus pattern (47 bp):
AACTGTATCTACAGAAACATCGCAAATTGTATTGTAGAATTATTGTG
Found at i:29466085 original size:23 final size:21
Alignment explanation
Indices: 29466019--29466098 Score: 63
Period size: 23 Copynumber: 3.5 Consensus size: 21
29466009 AAATGTCGAG
*
29466019 AATTGTATTGTAGAATATTGTG
1 AATTGTATTGTAGAATATTG-C
* *
29466041 AACTGTATT-TACAGAAACATTGC
1 AATTGTATTGT--AG-AATATTGC
29466064 AAATTGTATTGTAGAATTATTGC
1 -AATTGTATTGTAGAA-TATTGC
29466087 AATCTGTATTGT
1 AAT-TGTATTGT
29466099 TTGTATTGTA
Statistics
Matches: 46, Mismatches: 5, Indels: 13
0.72 0.08 0.20
Matches are distributed among these distances:
21 1 0.02
22 13 0.28
23 17 0.37
24 14 0.30
25 1 0.02
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.41
Consensus pattern (21 bp):
AATTGTATTGTAGAATATTGC
Found at i:29466126 original size:32 final size:32
Alignment explanation
Indices: 29466067--29466128 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
29466057 ACATTGCAAA
***
29466067 TTGTATTGTAGAATTATTGCAATCTGTATTGT
1 TTGTATTGTAGAATTACCACAATCTGTATTGT
29466099 TTGTATTGTAGAATTACCACGAA-CTGTATT
1 TTGTATTGTAGAATTACCAC-AATCTGTATT
29466129 TACAGAAATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 24 0.92
33 2 0.08
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (32 bp):
TTGTATTGTAGAATTACCACAATCTGTATTGT
Found at i:29466530 original size:162 final size:162
Alignment explanation
Indices: 29466333--29466740 Score: 505
Period size: 162 Copynumber: 2.5 Consensus size: 162
29466323 ATTAGCGAAT
* * *
29466333 TGTGAGATTTGTAAAATCCTGTAAGTAGAAGGTCATGATTGTAAGTCAGAGGACTTTGAGATTCG
1 TGTGAGATTTGTAAAATCCCGTAAGTAGAAGGTCATGATTGTAAATCAGAGGACTGTGAGATTCG
* ** * *
29466398 TAAAATCTCGTAAGTAGAAAGTCATGATCGTAAATCAGCAGACTGTGATATTCGTAAAAT-CCAG
66 TAAAATCACGTAAGTAGAAAGTCATGATCGTAAATCAGCAGACCATGAGATTCATAAAATCCCA-
*
29466462 TAAGTAAAAGGTCATGATTGTAAATCAGCAGAC
130 AAAGTAAAAGGTCATGATTGTAAATCAGCAGAC
** * **
29466495 TGTGAGATTCATAAAATCCCGTAAGTAAAAGGTCATGAAGGTAAATCAGCA-GACTGTGAGATTC
1 TGTGAGATTTGTAAAATCCCGTAAGTAGAAGGTCATGATTGTAAATCAG-AGGACTGTGAGATTC
* * * * * * **
29466559 ATAAAATCCCGAAAGTAAAAAGTCGTGATTGTAAATCAGTGGACCATGAGATTCATAAAATCCCA
65 GTAAAATCACGTAAGTAGAAAGTCATGATCGTAAATCAGCAGACCATGAGATTCATAAAATCCCA
* * * *
29466624 AAATTAAAAGGTCGTGGTTGTAAATCAGTAGAC
130 AAAGTAAAAGGTCATGATTGTAAATCAGCAGAC
* * * * *
29466657 TGTGAGATTTGTAAAATCTCGAAAATAGAAGGTCATGATTGTAAATCAGTGGACCGTGAGATTCG
1 TGTGAGATTTGTAAAATCCCGTAAGTAGAAGGTCATGATTGTAAATCAGAGGACTGTGAGATTCG
29466722 TAAAATCACGTAAGTAGAA
66 TAAAATCACGTAAGTAGAA
29466741 GCCACTTGTG
Statistics
Matches: 204, Mismatches: 39, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
162 200 0.98
163 4 0.02
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (162 bp):
TGTGAGATTTGTAAAATCCCGTAAGTAGAAGGTCATGATTGTAAATCAGAGGACTGTGAGATTCG
TAAAATCACGTAAGTAGAAAGTCATGATCGTAAATCAGCAGACCATGAGATTCATAAAATCCCAA
AAGTAAAAGGTCATGATTGTAAATCAGCAGAC
Found at i:29466741 original size:54 final size:54
Alignment explanation
Indices: 29466333--29466737 Score: 454
Period size: 54 Copynumber: 7.5 Consensus size: 54
29466323 ATTAGCGAAT
* * * *
29466333 TGTGAGATTTGTAAAATCCTGTAAGTAGAAGGTCATGATTGTAAGTCAG-AGGAC
1 TGTGAGATTCGTAAAATCCCGTAAGTAAAAGGTCATGATTGTAAATCAGCA-GAC
* * *
29466387 TTTGAGATTCGTAAAATCTCGTAAGTAGAAA-GTCATGATCGTAAATCAGCAGAC
1 TGTGAGATTCGTAAAATCCCGTAAGTA-AAAGGTCATGATTGTAAATCAGCAGAC
* *
29466441 TGTGATATTCGTAAAATCCAGTAAGTAAAAGGTCATGATTGTAAATCAGCAGAC
1 TGTGAGATTCGTAAAATCCCGTAAGTAAAAGGTCATGATTGTAAATCAGCAGAC
* **
29466495 TGTGAGATTCATAAAATCCCGTAAGTAAAAGGTCATGAAGGTAAATCAGCAGAC
1 TGTGAGATTCGTAAAATCCCGTAAGTAAAAGGTCATGATTGTAAATCAGCAGAC
* * * * **
29466549 TGTGAGATTCATAAAATCCCGAAAGTAAAAAGTCGTGATTGTAAATCAGTGGAC
1 TGTGAGATTCGTAAAATCCCGTAAGTAAAAGGTCATGATTGTAAATCAGCAGAC
** * ** * * * *
29466603 CATGAGATTCATAAAATCCCAAAATTAAAAGGTCGTGGTTGTAAATCAGTAGAC
1 TGTGAGATTCGTAAAATCCCGTAAGTAAAAGGTCATGATTGTAAATCAGCAGAC
* * * * * **
29466657 TGTGAGATTTGTAAAATCTCGAAAATAGAAGGTCATGATTGTAAATCAGTGGAC
1 TGTGAGATTCGTAAAATCCCGTAAGTAAAAGGTCATGATTGTAAATCAGCAGAC
* *
29466711 CGTGAGATTCGTAAAATCACGTAAGTA
1 TGTGAGATTCGTAAAATCCCGTAAGTA
29466738 GAAGCCACTT
Statistics
Matches: 301, Mismatches: 47, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
53 3 0.01
54 295 0.98
55 3 0.01
ACGTcount: A:0.38, C:0.13, G:0.22, T:0.27
Consensus pattern (54 bp):
TGTGAGATTCGTAAAATCCCGTAAGTAAAAGGTCATGATTGTAAATCAGCAGAC
Found at i:29469198 original size:46 final size:45
Alignment explanation
Indices: 29469098--29469282 Score: 320
Period size: 45 Copynumber: 4.1 Consensus size: 45
29469088 GTATGATCAA
*
29469098 TTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAGGCTACCAC
1 TTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCAC
*
29469141 TTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AGGCTACCAC
29469187 TTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCAC
1 TTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCAC
*
29469232 TTATCACTTTGTCACTTGATCAGATAAGTGTAGTTAGGCTACCAC
1 TTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCAC
29469277 TTATCA
1 TTATCA
29469283 NNNNNNNNNN
Statistics
Matches: 135, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
43 7 0.05
44 5 0.04
45 79 0.59
46 44 0.33
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.34
Consensus pattern (45 bp):
TTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCAC
Found at i:29469216 original size:91 final size:88
Alignment explanation
Indices: 29469098--29469282 Score: 316
Period size: 91 Copynumber: 2.1 Consensus size: 88
29469088 GTATGATCAA
29469098 TTATCACTTGTCCCTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTTGATCA
1 TTATCACTTGTCCCTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTTGATCA
29469163 GATAAGTGTAGCTAAAGCTACCAC
66 GATAAGTGTAG-TAAAGCTACCAC
*
29469187 TTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTTGAT
1 TTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTTGAT
* *
29469252 CAGATAAGTGTAGTTAGGCTACCAC
64 CAGATAAGTGTAGTAAAGCTACCAC
29469277 TTATCA
1 TTATCA
29469283 NNNNNNNNNN
Statistics
Matches: 91, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
89 7 0.08
90 21 0.23
91 63 0.69
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.34
Consensus pattern (88 bp):
TTATCACTTGTCCCTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTTGATCA
GATAAGTGTAGTAAAGCTACCAC
Found at i:29471498 original size:41 final size:41
Alignment explanation
Indices: 29471448--29471850 Score: 440
Period size: 41 Copynumber: 9.9 Consensus size: 41
29471438 TTCTAATCTT
**
29471448 TCGGGGCTTTAGCGGTATTTTTGGAAAAGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
* * * * *
29471489 TTGGGGCTTTAGTGGTGTTTTTGAAAAAGCGCCGGTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
* * *
29471530 TCGGGGCTTTCGCAGCGTTTTTGGAAAAGCGCTGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
* *
29471571 TCGAGGCTTTCGCGGCGTTTTT-GAAAAGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
** * * * * * *
29471611 TCGAAGATTTAGCGACATTTTTGAAAAAGGGCCACTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
**
29471652 TCGGGGCTTTAGCGGCG-TTTTCCAAGAAGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAA-AAGCGCCGCTAATGC
**
29471693 TCGGGGCTTTAGCGGCG-TTTTCCAAGAAGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAA-AAGCGCCGCTAATGC
**
29471734 TCGGGGCTTTAGCGGCG-TTTTCCAAGAAGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAA-AAGCGCCGCTAATGC
* * * *
29471775 TCGGGACTTTAGCGGCGTTTTCCAGG--AAGCACCACTAATGC
1 TCGGGGCTTTAGCGGCGTTTT--TGGAAAAGCGCCGCTAATGC
*
29471816 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGC
1 TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGC
29471851 AAAAAAAATT
Statistics
Matches: 311, Mismatches: 44, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
39 1 0.00
40 40 0.13
41 267 0.86
42 3 0.01
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.27
Consensus pattern (41 bp):
TCGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGC
Found at i:29471785 original size:123 final size:122
Alignment explanation
Indices: 29471448--29471850 Score: 502
Period size: 123 Copynumber: 3.3 Consensus size: 122
29471438 TTCTAATCTT
** * * *
29471448 TCGGGGCTTTAGCGGTATTTTTGGAAAAGCGCCGCTAATGCTTGGGGCTTTAGTGGTGTTTTTGA
1 TCGGGGCTTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGA
* * * ** *
29471513 AAAAGCGCCGGTAATGCTCGGGGCTTTCGCAGCGTTTTTGGAA-AAGCGCTGCTAATGC
65 AAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCG-TTTTCCAAGAAGCGCCGCTAATGC
* * ** * * *
29471571 TCGAGGCTTTCGCGGCGTTTTTGAAAAGCGCCGCTAATGCTCGAAGATTTAGCGACATTTTTGAA
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGAA
* *
29471636 AAAGGGCCACTAATGCTCGGGGCTTTAGCGGCGTTTTCCAAGAAGCGCCGCTAATGC
66 AAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTCCAAGAAGCGCCGCTAATGC
** **
29471693 TCGGGGCTTTAGCGGCGTTTTCCAAGAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTCCA
1 TCGGGGCTTTAGCGGCGTTTTTGAA-AAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGA
* * * * *
29471758 AGAAGCGCCGCTAATGCTCGGGACTTTAGCGGCGTTTTCCAGGAAGCACCACTAATGC
65 AAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTCCAAGAAGCGCCGCTAATGC
29471816 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGC
1 TCGGGGCTTTAGCGGCGTTTTTG-AAAAGCGCCGC
29471851 AAAAAAAATT
Statistics
Matches: 237, Mismatches: 40, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
121 6 0.03
122 98 0.41
123 131 0.55
124 2 0.01
ACGTcount: A:0.20, C:0.23, G:0.31, T:0.27
Consensus pattern (122 bp):
TCGGGGCTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGAA
AAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTCCAAGAAGCGCCGCTAATGC
Found at i:29472488 original size:21 final size:21
Alignment explanation
Indices: 29472448--29472492 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
29472438 TAAGTAAGAT
* *
29472448 TTAGGGGTTTGTAGTTAAAGG
1 TTAGGGGTTTGGAGTGAAAGG
*
29472469 TTAGGGGTTTGGGGTGAAAGG
1 TTAGGGGTTTGGAGTGAAAGG
29472490 TTA
1 TTA
29472493 AGAGTTAGTG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.22, C:0.00, G:0.42, T:0.36
Consensus pattern (21 bp):
TTAGGGGTTTGGAGTGAAAGG
Found at i:29474117 original size:56 final size:57
Alignment explanation
Indices: 29473995--29474134 Score: 237
Period size: 56 Copynumber: 2.4 Consensus size: 57
29473985 TTCTGCATCC
29473995 TTTTGTTCAATTGCATATTGGATTGTCATATATGTGTGTGTGTGTGTGTGTTGTCATATA
1 TTTTGTTCAATTGCATATTGGATTGTCATATA---GTGTGTGTGTGTGTGTTGTCATATA
29474055 TTTTGTTCAATTGCATATTGGATTGTCATATA-TGTGTGTGTGTGTGTTGTCATATA
1 TTTTGTTCAATTGCATATTGGATTGTCATATAGTGTGTGTGTGTGTGTTGTCATATA
*
29474111 TTTTGTTCAATTGCATATTTGATT
1 TTTTGTTCAATTGCATATTGGATT
29474135 TTGAGGTTTT
Statistics
Matches: 79, Mismatches: 1, Indels: 4
0.94 0.01 0.05
Matches are distributed among these distances:
56 47 0.59
60 32 0.41
ACGTcount: A:0.19, C:0.07, G:0.22, T:0.51
Consensus pattern (57 bp):
TTTTGTTCAATTGCATATTGGATTGTCATATAGTGTGTGTGTGTGTGTTGTCATATA
Found at i:29477315 original size:44 final size:43
Alignment explanation
Indices: 29477234--29477390 Score: 235
Period size: 43 Copynumber: 3.7 Consensus size: 43
29477224 TTTTTGTGAG
* * * *
29477234 AAGCGTCGCTAAAGGT-TTGTTCTTTAGCGGCGATTGTGATAAA
1 AAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTGAT-AA
*
29477277 AAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTGACAA
1 AAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTGATAA
* *
29477320 AAGCGCCGATAAAGGTCATGGTCTTTAGCGGCGTTTGTGATAA
1 AAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTGATAA
29477363 AAGCGCCGCTAAAGGTCATGATCTTTAG
1 AAGCGCCGCTAAAGGTCATGATCTTTAG
29477391 TGGTGTTTTA
Statistics
Matches: 103, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
43 83 0.81
44 20 0.19
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (43 bp):
AAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTGATAA
Found at i:29478272 original size:18 final size:20
Alignment explanation
Indices: 29478238--29478277 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
29478228 TAAATTATTA
29478238 TTGTTAATAGTAATTTA-AT
1 TTGTTAATAGTAATTTATAT
*
29478257 TTGTTAA-AGTATTTTATAT
1 TTGTTAATAGTAATTTATAT
29478276 TT
1 TT
29478278 TCTACTAAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 11 0.58
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.57
Consensus pattern (20 bp):
TTGTTAATAGTAATTTATAT
Found at i:29484231 original size:48 final size:48
Alignment explanation
Indices: 29484160--29484253 Score: 143
Period size: 48 Copynumber: 2.0 Consensus size: 48
29484150 CCATTCATTT
* *
29484160 GCAAAATTTTAGTATTGTATTGGAATCACCATGGTAACTATATTGGTA
1 GCAAAATCTTAGTATTGTATTGGAATCACCATGGTAAATATATTGGTA
* * *
29484208 GCAAAATCTTAGTATTTTATTGGAATCGCCATGGTAAATGTATTGG
1 GCAAAATCTTAGTATTGTATTGGAATCACCATGGTAAATATATTGG
29484254 AATCACCATT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (48 bp):
GCAAAATCTTAGTATTGTATTGGAATCACCATGGTAAATATATTGGTA
Found at i:29484418 original size:74 final size:75
Alignment explanation
Indices: 29484246--29484484 Score: 383
Period size: 75 Copynumber: 3.2 Consensus size: 75
29484236 CCATGGTAAA
* * * *
29484246 TGTATTGGAATCACCATTCATTTACATTTGCAAAATCTTAGTACTGTATCTGCAAAATCTTCGTT
1 TGTATTGGAATCACCATTCATTTGCATTTGCAAAATCTTAGTACTATATCTGCAAAATCTTTGTA
29484311 ATCTTAGTAT
66 ATCTTAGTAT
29484321 TGTATTGGAATCACCATTCATTTGCATTTGCAAAATCTTAGTACTATATCT-CAAAATCTTTGTA
1 TGTATTGGAATCACCATTCATTTGCATTTGCAAAATCTTAGTACTATATCTGCAAAATCTTTGTA
29484385 ATCTTAGTAT
66 ATCTTAGTAT
* * *
29484395 TGTATTGGAATCGCCATTAATTTGCATTTGCGAAATCTTAGTACTATAAT-TGCAAAATCTTTGT
1 TGTATTGGAATCACCATTCATTTGCATTTGCAAAATCTTAGTACTAT-ATCTGCAAAATCTTTGT
*
29484459 AATCCTAGTAT
65 AATCTTAGTAT
29484470 TGTATTGGAATCACC
1 TGTATTGGAATCACC
29484485 GTGGTAGTAC
Statistics
Matches: 153, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
74 66 0.43
75 87 0.57
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.41
Consensus pattern (75 bp):
TGTATTGGAATCACCATTCATTTGCATTTGCAAAATCTTAGTACTATATCTGCAAAATCTTTGTA
ATCTTAGTAT
Found at i:29484492 original size:25 final size:25
Alignment explanation
Indices: 29484464--29484515 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
29484454 TTTGTAATCC
* * *
29484464 TAGTATTGTATTGGAATCACCGTGG
1 TAGTACTGTATTGGAATAACCATGG
29484489 TAGTACTGTATTGGAATAACCATGG
1 TAGTACTGTATTGGAATAACCATGG
29484514 TA
1 TA
29484516 ACTTCTTAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.29, C:0.12, G:0.25, T:0.35
Consensus pattern (25 bp):
TAGTACTGTATTGGAATAACCATGG
Found at i:29486311 original size:21 final size:22
Alignment explanation
Indices: 29486287--29486335 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
29486277 AGACTAATTT
29486287 GAAACAAAACA-GAAAAATATG
1 GAAACAAAACATGAAAAATATG
* * *
29486308 GAAAAAAAACATGAAAATTTTG
1 GAAACAAAACATGAAAAATATG
29486330 GAAACA
1 GAAACA
29486336 TGGGTCACAC
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 10 0.43
22 13 0.57
ACGTcount: A:0.63, C:0.08, G:0.14, T:0.14
Consensus pattern (22 bp):
GAAACAAAACATGAAAAATATG
Found at i:29489488 original size:28 final size:29
Alignment explanation
Indices: 29489447--29489505 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 29
29489437 CTCTTTAGAG
29489447 GTGTCACCCCATAAAGCCTATTAACCACC
1 GTGTCACCCCATAAAGCCTATTAACCACC
29489476 GTGTC-CCCCATAAAGCCTATTAACCACC
1 GTGTCACCCCATAAAGCCTATTAACCACC
29489504 GT
1 GT
29489506 CGCGGTGTTG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 25 0.83
29 5 0.17
ACGTcount: A:0.29, C:0.37, G:0.12, T:0.22
Consensus pattern (29 bp):
GTGTCACCCCATAAAGCCTATTAACCACC
Found at i:29490636 original size:11 final size:11
Alignment explanation
Indices: 29490619--29490660 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
29490609 TATTTTTTTC
29490619 ACTATTTTGCT
1 ACTATTTTGCT
* *
29490630 ACCATTTTTCT
1 ACTATTTTGCT
*
29490641 ATTATTTTGCT
1 ACTATTTTGCT
29490652 ACTATTTTG
1 ACTATTTTG
29490661 TTGTTATTGT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.19, C:0.17, G:0.07, T:0.57
Consensus pattern (11 bp):
ACTATTTTGCT
Found at i:29490667 original size:22 final size:22
Alignment explanation
Indices: 29490587--29490668 Score: 64
Period size: 22 Copynumber: 3.8 Consensus size: 22
29490577 TTATTTTTTT
* *
29490587 TACTGTTTTGTTGTTATTTT-C
1 TACTATTTTGTTATTATTTTGC
* *
29490608 T--TATTTTTTTCACTATTTTGC
1 TACTATTTTGTT-ATTATTTTGC
*
29490629 TACCATTTT-TCTATTATTTTGC
1 TACTATTTTGT-TATTATTTTGC
*
29490651 TACTATTTTGTTGTTATT
1 TACTATTTTGTTATTATT
29490669 GTTTGGGTAT
Statistics
Matches: 47, Mismatches: 8, Indels: 11
0.71 0.12 0.17
Matches are distributed among these distances:
19 7 0.15
20 6 0.13
21 3 0.06
22 24 0.51
23 7 0.15
ACGTcount: A:0.15, C:0.12, G:0.09, T:0.65
Consensus pattern (22 bp):
TACTATTTTGTTATTATTTTGC
Found at i:29490792 original size:11 final size:11
Alignment explanation
Indices: 29490772--29490802 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
29490762 AAGTATACAT
29490772 ATTT-TTTTAA
1 ATTTGTTTTAA
29490782 ATTTGTTTTAA
1 ATTTGTTTTAA
29490793 ATTTGTTTTA
1 ATTTGTTTTA
29490803 GTGTTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 4 0.20
11 16 0.80
ACGTcount: A:0.26, C:0.00, G:0.06, T:0.68
Consensus pattern (11 bp):
ATTTGTTTTAA
Found at i:29491361 original size:8 final size:8
Alignment explanation
Indices: 29491344--29491389 Score: 58
Period size: 9 Copynumber: 5.6 Consensus size: 8
29491334 TTAATGAGAT
29491344 AAAAAT-A
1 AAAAATAA
29491351 AAAAATAA
1 AAAAATAA
29491359 AAAAATAAA
1 AAAAAT-AA
*
29491368 AAAAATATG
1 AAAAATA-A
29491377 AAAAATAA
1 AAAAATAA
29491385 AAAAA
1 AAAAA
29491390 CCAACTAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
7 6 0.18
8 13 0.38
9 15 0.44
ACGTcount: A:0.85, C:0.00, G:0.02, T:0.13
Consensus pattern (8 bp):
AAAAATAA
Found at i:29494219 original size:27 final size:27
Alignment explanation
Indices: 29494189--29494244 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
29494179 ATAGCAATCC
* * *
29494189 ACCCTGTATTTGTTGTCCTGGGGGACT
1 ACCCTGTATTTATTGTCCCGGCGGACT
*
29494216 ACCCTGTCTTTATTGTCCCGGCGGACT
1 ACCCTGTATTTATTGTCCCGGCGGACT
29494243 AC
1 AC
29494245 ATATGCTGCC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.12, C:0.29, G:0.25, T:0.34
Consensus pattern (27 bp):
ACCCTGTATTTATTGTCCCGGCGGACT
Found at i:29494671 original size:45 final size:45
Alignment explanation
Indices: 29494607--29494787 Score: 362
Period size: 45 Copynumber: 4.0 Consensus size: 45
29494597 ATACACAATC
29494607 CAAATACATTATCCATTCATCTAATAGTGATAAAGAATGCCAAAT
1 CAAATACATTATCCATTCATCTAATAGTGATAAAGAATGCCAAAT
29494652 CAAATACATTATCCATTCATCTAATAGTGATAAAGAATGCCAAAT
1 CAAATACATTATCCATTCATCTAATAGTGATAAAGAATGCCAAAT
29494697 CAAATACATTATCCATTCATCTAATAGTGATAAAGAATGCCAAAT
1 CAAATACATTATCCATTCATCTAATAGTGATAAAGAATGCCAAAT
29494742 CAAATACATTATCCATTCATCTAATAGTGATAAAGAATGCCAAAT
1 CAAATACATTATCCATTCATCTAATAGTGATAAAGAATGCCAAAT
29494787 C
1 C
29494788 CATAACTTCT
Statistics
Matches: 136, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 136 1.00
ACGTcount: A:0.44, C:0.18, G:0.09, T:0.29
Consensus pattern (45 bp):
CAAATACATTATCCATTCATCTAATAGTGATAAAGAATGCCAAAT
Found at i:29506149 original size:83 final size:87
Alignment explanation
Indices: 29506018--29506208 Score: 230
Period size: 83 Copynumber: 2.2 Consensus size: 87
29506008 TTGAACCATA
* *
29506018 AGTG-TTGCAGGTTAATACACTGCTAGTAGTTGTGAATACACAACGGG-T-T-TAATAGCTACCA
1 AGTGTTTGCAGGTTAATACACCGCCAGTAGTTGTGAATACACAACGGGTTGTATAATAGCTACCA
29506079 GT-AAAAAATGGATAAACCACT
66 GTAAAAAAATGGATAAACCACT
** * * * *
29506100 AGTGTTTGCAGGTTAATATGCCGCCAGTGGTTGTGAATACAGAATGGGTTTGTAGATAATAGCTG
1 AGTGTTTGCAGGTTAATACACCGCCAGTAGTTGTGAATACACAACGGG-TTGT--ATAATAGCTA
* *
29506165 TCAGTAAAAAAATGGATAAACCTCT
63 CCAGTAAAAAAATGGATAAACCACT
29506190 AGTGTTTGCAGGTTAATAC
1 AGTGTTTGCAGGTTAATAC
29506209 GTTGTCAGTG
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
82 4 0.04
83 36 0.40
85 1 0.01
86 1 0.01
89 12 0.13
90 36 0.40
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.29
Consensus pattern (87 bp):
AGTGTTTGCAGGTTAATACACCGCCAGTAGTTGTGAATACACAACGGGTTGTATAATAGCTACCA
GTAAAAAAATGGATAAACCACT
Found at i:29512831 original size:36 final size:36
Alignment explanation
Indices: 29512783--29512853 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
29512773 ATCAAAGGCT
*
29512783 ATAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
1 ATAATTAAAAGCTGTATACAATTAAAACTCTAAGAC
*
29512819 ATAATTAGAAGCTGTATACAATTAAAACTCTAAGA
1 ATAATTAAAAGCTGTATACAATTAAAACTCTAAGA
29512854 TTAAATAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.28
Consensus pattern (36 bp):
ATAATTAAAAGCTGTATACAATTAAAACTCTAAGAC
Found at i:29518700 original size:36 final size:36
Alignment explanation
Indices: 29518652--29518722 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
29518642 ATCAAAGGCT
*
29518652 ATAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
1 ATAATTAAAAGCTGTATACAATTAAAACTCTAAGAC
*
29518688 ATAATTAGAAGCTGTATACAATTAAAACTCTAAGA
1 ATAATTAAAAGCTGTATACAATTAAAACTCTAAGA
29518723 TTAAATAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.48, C:0.13, G:0.11, T:0.28
Consensus pattern (36 bp):
ATAATTAAAAGCTGTATACAATTAAAACTCTAAGAC
Found at i:29522654 original size:102 final size:102
Alignment explanation
Indices: 29522522--29522725 Score: 399
Period size: 102 Copynumber: 2.0 Consensus size: 102
29522512 GGTTCGCGGA
*
29522522 GTAGATCGCAATTGGAGGTTCGTAAGATTTATATACATAAAGTTATTCATGTTATGTCTGTCTGC
1 GTAGATCACAATTGGAGGTTCGTAAGATTTATATACATAAAGTTATTCATGTTATGTCTGTCTGC
29522587 AAGATCTATTGTATTTCATTTGATTACTTTTTGTTCG
66 AAGATCTATTGTATTTCATTTGATTACTTTTTGTTCG
29522624 GTAGATCACAATTGGAGGTTCGTAAGATTTATATACATAAAGTTATTCATGTTATGTCTGTCTGC
1 GTAGATCACAATTGGAGGTTCGTAAGATTTATATACATAAAGTTATTCATGTTATGTCTGTCTGC
29522689 AAGATCTATTGTATTTCATTTGATTACTTTTTGTTCG
66 AAGATCTATTGTATTTCATTTGATTACTTTTTGTTCG
29522726 AGCCAACTTT
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 101 1.00
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44
Consensus pattern (102 bp):
GTAGATCACAATTGGAGGTTCGTAAGATTTATATACATAAAGTTATTCATGTTATGTCTGTCTGC
AAGATCTATTGTATTTCATTTGATTACTTTTTGTTCG
Found at i:29526775 original size:145 final size:145
Alignment explanation
Indices: 29526507--29526798 Score: 575
Period size: 145 Copynumber: 2.0 Consensus size: 145
29526497 GTAAACTCGG
*
29526507 TTTGTTGGTTTATTAACCTACCATCCTGTCTTATCCATTTTGGATACCATTGCCGCCTACTTCAT
1 TTTGGTGGTTTATTAACCTACCATCCTGTCTTATCCATTTTGGATACCATTGCCGCCTACTTCAT
29526572 ACAGTTTTGACTTTTAGTGTGGACTTAAATTGCCACATCTCCTGTGGAACTCCTCCATCCTCCAT
66 ACAGTTTTGACTTTTAGTGTGGACTTAAATTGCCACATCTCCTGTGGAACTCCTCCATCCTCCAT
29526637 AGCCAATTTCATGTA
131 AGCCAATTTCATGTA
29526652 TTTGGTGGTTTATTAACCTACCATCCTGTCTTATCCATTTTGGATACCATTGCCGCCTACTTCAT
1 TTTGGTGGTTTATTAACCTACCATCCTGTCTTATCCATTTTGGATACCATTGCCGCCTACTTCAT
29526717 ACAGTTTTGACTTTTAGTGTGGACTTAAATTGCCACATCTCCTGTGGAACTCCTCCATCCTCCAT
66 ACAGTTTTGACTTTTAGTGTGGACTTAAATTGCCACATCTCCTGTGGAACTCCTCCATCCTCCAT
29526782 AGCCAATTTCATGTA
131 AGCCAATTTCATGTA
29526797 TT
1 TT
29526799 ATGCACATAT
Statistics
Matches: 146, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 146 1.00
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (145 bp):
TTTGGTGGTTTATTAACCTACCATCCTGTCTTATCCATTTTGGATACCATTGCCGCCTACTTCAT
ACAGTTTTGACTTTTAGTGTGGACTTAAATTGCCACATCTCCTGTGGAACTCCTCCATCCTCCAT
AGCCAATTTCATGTA
Found at i:29533371 original size:27 final size:28
Alignment explanation
Indices: 29533303--29533372 Score: 90
Period size: 28 Copynumber: 2.5 Consensus size: 28
29533293 ATGAGGAAAT
29533303 AATAGCCTTTGTGGTGAAGTTATGAAGG
1 AATAGCCTTTGTGGTGAAGTTATGAAGG
** *
29533331 AATAGCCTCAGTGGTGAA-TTTTGTAAGG
1 AATAGCCTTTGTGGTGAAGTTATG-AAGG
29533359 -ATAGCCTTTGTGGT
1 AATAGCCTTTGTGGT
29533373 ACACTTCAGA
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
27 16 0.44
28 20 0.56
ACGTcount: A:0.26, C:0.10, G:0.30, T:0.34
Consensus pattern (28 bp):
AATAGCCTTTGTGGTGAAGTTATGAAGG
Found at i:29540150 original size:20 final size:21
Alignment explanation
Indices: 29540125--29540178 Score: 58
Period size: 20 Copynumber: 2.7 Consensus size: 21
29540115 TTAGAAATTG
*
29540125 GTATTGATACTTGTAA-GAGA
1 GTATTGATACTTGTAATGAAA
* * *
29540145 GTATTGACACCT-TAATTAAA
1 GTATTGATACTTGTAATGAAA
29540165 GTATTGATACTTGT
1 GTATTGATACTTGT
29540179 TGATTCAAGA
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
19 3 0.12
20 22 0.85
21 1 0.04
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (21 bp):
GTATTGATACTTGTAATGAAA
Found at i:29549754 original size:20 final size:20
Alignment explanation
Indices: 29549729--29549777 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
29549719 CTATTGCCTC
*
29549729 TGTCCCTTCCACCATGG-TGT
1 TGTCCCTTCCACCA-GGCTAT
*
29549749 TGTCCCTTCCAGCAGGCTAT
1 TGTCCCTTCCACCAGGCTAT
29549769 TGTCCCTTC
1 TGTCCCTTC
29549778 AATGGGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 2 0.08
20 24 0.92
ACGTcount: A:0.10, C:0.37, G:0.18, T:0.35
Consensus pattern (20 bp):
TGTCCCTTCCACCAGGCTAT
Found at i:29549889 original size:17 final size:16
Alignment explanation
Indices: 29549852--29549901 Score: 50
Period size: 17 Copynumber: 3.1 Consensus size: 16
29549842 GGAAAAGAGA
29549852 AAGAAAAGAGAGAAAG
1 AAGAAAAGAGAGAAAG
*
29549868 GAGAAGAAGAGA-AGAAG
1 AAGAA-AAGAGAGA-AAG
*
29549885 AAG-AAAGAAAGAAAG
1 AAGAAAAGAGAGAAAG
29549900 AA
1 AA
29549902 AGAAGGTAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
15 10 0.36
16 7 0.25
17 11 0.39
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (16 bp):
AAGAAAAGAGAGAAAG
Found at i:29553121 original size:145 final size:146
Alignment explanation
Indices: 29552858--29553150 Score: 534
Period size: 145 Copynumber: 2.0 Consensus size: 146
29552848 AACGAGATAT
* *
29552858 TTCTATTAAATCTCATTGCTACTTGTTTGTGACATTCAAATATACATCCCACGGTTGTTGTTAAA
1 TTCTATTAAATCTCATTGCTACTTGTTTGCGACATTCAAATATACATCCCACGGTTGTTGTCAAA
*
29552923 ATTTCTCCATCGAAATAAACGCATGCAAAAAACTAATTCTCCATCTTCAATACTAGATCTGTTAA
66 ATTTCTCCATCGAAATAAACGCATACAAAAAACTAATTCTCCATCTTCAATACTAGATCTGTTAA
29552988 AAAAA-TTCAAAATTC
131 AAAAATTTCAAAATTC
*
29553003 TTCTATTAAATCTCATTGCTACTTGTTTGCGACATTCAAATATACATCCCATGGTTGTTGTCAAA
1 TTCTATTAAATCTCATTGCTACTTGTTTGCGACATTCAAATATACATCCCACGGTTGTTGTCAAA
*
29553068 ATTTCTCCATCGAAATAAACGCATACAAAAAACTGATTCTCCATCTTCAATACTAGATCTGTTAA
66 ATTTCTCCATCGAAATAAACGCATACAAAAAACTAATTCTCCATCTTCAATACTAGATCTGTTAA
29553133 AAAAATTTCAAAATTC
131 AAAAATTTCAAAATTC
29553149 TT
1 TT
29553151 AAAACAATTT
Statistics
Matches: 142, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
145 130 0.92
146 12 0.08
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.35
Consensus pattern (146 bp):
TTCTATTAAATCTCATTGCTACTTGTTTGCGACATTCAAATATACATCCCACGGTTGTTGTCAAA
ATTTCTCCATCGAAATAAACGCATACAAAAAACTAATTCTCCATCTTCAATACTAGATCTGTTAA
AAAAATTTCAAAATTC
Found at i:29553154 original size:20 final size:20
Alignment explanation
Indices: 29553129--29553166 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
29553119 ACTAGATCTG
29553129 TTAAAAAAATTTCAAAATTC
1 TTAAAAAAATTTCAAAATTC
* *
29553149 TTAAAACAATTTCGAAAT
1 TTAAAAAAATTTCAAAAT
29553167 GCAAAAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.11, G:0.03, T:0.34
Consensus pattern (20 bp):
TTAAAAAAATTTCAAAATTC
Found at i:29553677 original size:57 final size:55
Alignment explanation
Indices: 29553587--29553695 Score: 173
Period size: 57 Copynumber: 1.9 Consensus size: 55
29553577 TTATTAAAAG
* * *
29553587 AAAAAATAATATAAAAATTTATTGGCGCTTGTCAGATAGGCGCGATTAAAAAGAA
1 AAAAAATAATATAAAAATTCATTGGCGCCTGTCAGATAGGCGCCATTAAAAAGAA
29553642 AAAAAATTAATATAAAAAATTCATTGGCGCCTGTCAGATAGGCGCCATTAAAAA
1 AAAAAA-TAATAT-AAAAATTCATTGGCGCCTGTCAGATAGGCGCCATTAAAAA
29553696 AAACATATCA
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
55 6 0.12
56 6 0.12
57 37 0.76
ACGTcount: A:0.47, C:0.12, G:0.17, T:0.25
Consensus pattern (55 bp):
AAAAAATAATATAAAAATTCATTGGCGCCTGTCAGATAGGCGCCATTAAAAAGAA
Found at i:29553833 original size:17 final size:16
Alignment explanation
Indices: 29553811--29553885 Score: 60
Period size: 17 Copynumber: 4.2 Consensus size: 16
29553801 ATTGGCTCGT
29553811 AAATAAAAAAATATAAA
1 AAATAAAAAAATA-AAA
*
29553828 AAATAAAAATATAAAGA
1 AAATAAAAAAATAAA-A
29553845 GAAATGAAATTAAAATAAAA
1 -AAAT-AAA--AAAATAAAA
*
29553865 ACATAAGAAAAATAATAA
1 AAATAA-AAAAATAA-AA
29553883 AAA
1 AAA
29553886 GATTGTAGTA
Statistics
Matches: 47, Mismatches: 4, Indels: 13
0.73 0.06 0.20
Matches are distributed among these distances:
16 2 0.04
17 20 0.43
18 10 0.21
19 7 0.15
20 1 0.02
21 7 0.15
ACGTcount: A:0.76, C:0.01, G:0.05, T:0.17
Consensus pattern (16 bp):
AAATAAAAAAATAAAA
Found at i:29554234 original size:7 final size:7
Alignment explanation
Indices: 29554222--29554251 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
29554212 ATTGTGGGTG
29554222 AGTGAGC
1 AGTGAGC
29554229 AGTGAGC
1 AGTGAGC
29554236 AGTGAGC
1 AGTGAGC
29554243 AGTGAGC
1 AGTGAGC
29554250 AG
1 AG
29554252 AGGCTCCTGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.43, T:0.13
Consensus pattern (7 bp):
AGTGAGC
Found at i:29555086 original size:11 final size:11
Alignment explanation
Indices: 29555048--29555108 Score: 81
Period size: 11 Copynumber: 5.5 Consensus size: 11
29555038 AAAATCCTTT
*
29555048 CTCTC-AATTT
1 CTCTCAAATTC
29555058 CTCTCTAATATT-
1 CTCTC-AA-ATTC
29555070 CTCTCAAATTC
1 CTCTCAAATTC
29555081 CTCTCAAATTC
1 CTCTCAAATTC
29555092 CTCTCAAATTC
1 CTCTCAAATTC
29555103 CTCTCA
1 CTCTCA
29555109 TTCCTATTTA
Statistics
Matches: 47, Mismatches: 0, Indels: 7
0.87 0.00 0.13
Matches are distributed among these distances:
10 8 0.17
11 30 0.64
12 6 0.13
13 3 0.06
ACGTcount: A:0.25, C:0.34, G:0.00, T:0.41
Consensus pattern (11 bp):
CTCTCAAATTC
Found at i:29557221 original size:51 final size:49
Alignment explanation
Indices: 29557095--29557330 Score: 208
Period size: 51 Copynumber: 4.7 Consensus size: 49
29557085 GTGATGGTCA
* * * **
29557095 CGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGAAATG-TCG
1 CGTGTGTAGTACTATGTGCAAGCTACTACGTGTACC-GGAT-AGTTGATCG
* * * * *
29557145 CATGTGCAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGATCG
1 CGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGGATAG-TT-GATCG
* * * *
29557196 CGTTTGTAGTACTATGTGCAAGCTACTACGTGTATCGGATA-TTAATGG
1 CGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGGATAGTTGATCG
* * * *
29557244 TCATGTGTGTAGTACTATGTGCAAGCTACTACGTGAACTGGAAAGTTTGATCA
1 -C--GTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGGATAG-TTGATCG
29557297 CGTGTGTAGTACTATGTG-AAGGCTACTACGTGTA
1 CGTGTGTAGTACTATGTGCAA-GCTACTACGTGTA
29557331 TCGAATGATA
Statistics
Matches: 151, Mismatches: 26, Indels: 18
0.77 0.13 0.09
Matches are distributed among these distances:
48 4 0.03
49 9 0.06
50 61 0.40
51 72 0.48
52 1 0.01
53 4 0.03
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (49 bp):
CGTGTGTAGTACTATGTGCAAGCTACTACGTGTACCGGATAGTTGATCG
Found at i:29557360 original size:101 final size:101
Alignment explanation
Indices: 29557092--29557368 Score: 301
Period size: 101 Copynumber: 2.7 Consensus size: 101
29557082 AAAGTGATGG
* * ** *
29557092 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGA-AATGTCGCATGTGCAGTA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GAATGATAATGTCAAATGTGTAGTA
* * * *
29557156 CTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
65 CTATGTGCAAGCTACTACGCGAACCGGAAAGCTTCGA
* * * **
29557193 TCGCGTTTGTAGTACTATGTGCAA-GCTACTACGTGTATCGGAT-ATTAATGGTCATGTGTGTAG
1 TCACGTGTGTAGTACTATGTG-AAGGCTACTACGTGTATCGAATGA-TAAT-GTCAAATGTGTAG
* * *
29557256 TACTATGTGCAAGCTACTACGTGAACTGGAAAG-TTTGA
63 TACTATGTGCAAGCTACTACGCGAACCGGAAAGCTTCGA
* * *
29557294 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATAGTTAAATGAGTGGTA
1 TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAAT-GTCAAATGTGTAGTA
29557359 CTATGTGCAA
65 CTATGTGCAA
29557369 ACCACCGAAT
Statistics
Matches: 145, Mismatches: 25, Indels: 12
0.80 0.14 0.07
Matches are distributed among these distances:
99 1 0.01
100 5 0.03
101 101 0.70
102 38 0.26
ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAATGATAATGTCAAATGTGTAGTAC
TATGTGCAAGCTACTACGCGAACCGGAAAGCTTCGA
Found at i:29559278 original size:7 final size:7
Alignment explanation
Indices: 29559266--29559291 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
29559256 TAGTCGATTG
29559266 GTATTTA
1 GTATTTA
29559273 GTATTTA
1 GTATTTA
29559280 GTATTTA
1 GTATTTA
29559287 GTATT
1 GTATT
29559292 ATGTATTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:29559969 original size:18 final size:18
Alignment explanation
Indices: 29559946--29559988 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
29559936 TGCTAGGTAC
*
29559946 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTTTAT
29559964 GTATCCTAACCCTTTTAT
1 GTATCCTAACCCTTTTAT
*
29559982 GTTTCCT
1 GTATCCT
29559989 TTTTCTAGTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.16, C:0.28, G:0.09, T:0.47
Consensus pattern (18 bp):
GTATCCTAACCCTTTTAT
Found at i:29560275 original size:21 final size:21
Alignment explanation
Indices: 29560251--29560290 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
29560241 CTACCGAAGG
*
29560251 AACCAGAATCCCT-GCCGGAGT
1 AACCACAA-CCCTCGCCGGAGT
29560272 AACCACAACCCTCGCCGGA
1 AACCACAACCCTCGCCGGA
29560291 AGCTGGGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.30, C:0.40, G:0.20, T:0.10
Consensus pattern (21 bp):
AACCACAACCCTCGCCGGAGT
Found at i:29563887 original size:126 final size:126
Alignment explanation
Indices: 29563662--29563952 Score: 433
Period size: 126 Copynumber: 2.3 Consensus size: 126
29563652 CCAAACATGC
* * *
29563662 GCTACTGTAGTAAAAGCGCGTCCATGTGGGAGCTTCTTTCAGTACTTCTGTTGACAAAGCATCAT
1 GCTACAGTAGCAAAAGCGCGTCCATGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCAT
* *
29563727 GCTTAAAGCGTTTTTGACACTATTTACTCAGAAACGTCTACTCGAAATTATTTTTTCAGGA
66 GCTTAAAGCGTTTTTGACACTATTTACTCAGAAACGTATACTCAAAATTATTTTTTCAGGA
* * * *
29563788 GCTACAGTAGCAAAAGCGTGTCCATGTAGGAGTTTCTTTCAGTACTAT-TGCTGACAAAGCATCT
1 GCTACAGTAGCAAAAGCGCGTCCATGTGGGAGCTTCTTTCAGTACT-TCTGCTGACAAAGCATCA
* * *
29563852 TGTTTAAAGCTTTTTTGACACTATTTGCTCAGAAACGTATACTCAAAATTATTTTTTCAGGA
65 TGCTTAAAGCGTTTTTGACACTATTTACTCAGAAACGTATACTCAAAATTATTTTTTCAGGA
*
29563914 GCTACTA-TAGCAAAAGCGCGTCCACGTGGGAGCTTCTTT
1 GCTAC-AGTAGCAAAAGCGCGTCCATGTGGGAGCTTCTTT
29563953 AAATTAAAAA
Statistics
Matches: 147, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
126 145 0.99
127 2 0.01
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (126 bp):
GCTACAGTAGCAAAAGCGCGTCCATGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCAT
GCTTAAAGCGTTTTTGACACTATTTACTCAGAAACGTATACTCAAAATTATTTTTTCAGGA
Found at i:29563993 original size:7 final size:7
Alignment explanation
Indices: 29563981--29564006 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
29563971 ATTAAGTAAT
29563981 CCTAAAC
1 CCTAAAC
29563988 CCTAAAC
1 CCTAAAC
29563995 CCTAAAC
1 CCTAAAC
29564002 CCTAA
1 CCTAA
29564007 TTTATTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.42, G:0.00, T:0.15
Consensus pattern (7 bp):
CCTAAAC
Found at i:29565130 original size:22 final size:22
Alignment explanation
Indices: 29565086--29565130 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
29565076 TTTTTACTCT
* * *
29565086 TTTTTTTACTATTTTATTGTTA
1 TTTTTTTACTATTTCACTATTA
29565108 TTTTTTTACTATTTCACTATTA
1 TTTTTTTACTATTTCACTATTA
29565130 T
1 T
29565131 GTTGATACTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.09, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTTTTTACTATTTCACTATTA
Found at i:29566898 original size:22 final size:22
Alignment explanation
Indices: 29566854--29566898 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
29566844 TTTTTACTCT
* * *
29566854 TTTTTTTACTATTTTATTGTTA
1 TTTTTTTACTATTTCACTATTA
29566876 TTTTTTTACTATTTCACTATTA
1 TTTTTTTACTATTTCACTATTA
29566898 T
1 T
29566899 GTTGATACTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.20, C:0.09, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTTTTTACTATTTCACTATTA
Found at i:29576467 original size:32 final size:32
Alignment explanation
Indices: 29576430--29576490 Score: 122
Period size: 32 Copynumber: 1.9 Consensus size: 32
29576420 GTGTTCGTGT
29576430 ATGAATGAAAGAGACTGAGGTTTATGTAATGC
1 ATGAATGAAAGAGACTGAGGTTTATGTAATGC
29576462 ATGAATGAAAGAGACTGAGGTTTATGTAA
1 ATGAATGAAAGAGACTGAGGTTTATGTAA
29576491 CACTCCAAAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.39, C:0.05, G:0.28, T:0.28
Consensus pattern (32 bp):
ATGAATGAAAGAGACTGAGGTTTATGTAATGC
Found at i:29587647 original size:30 final size:30
Alignment explanation
Indices: 29587612--29587681 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 30
29587602 CCATCAAATA
*
29587612 ATGAAAAGGGATTGCTTCTGA-TATCGAGCT
1 ATGAAAAGGGATAGCTTC-GACTATCGAGCT
* *
29587642 TTGAAAAGTGATAGCTTCGACTATCGAGCT
1 ATGAAAAGGGATAGCTTCGACTATCGAGCT
29587672 ATGAAAAGGG
1 ATGAAAAGGG
29587682 TTGGGACAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 2 0.06
30 32 0.94
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (30 bp):
ATGAAAAGGGATAGCTTCGACTATCGAGCT
Found at i:29594343 original size:30 final size:31
Alignment explanation
Indices: 29594275--29594348 Score: 114
Period size: 31 Copynumber: 2.4 Consensus size: 31
29594265 ATCATCGGCT
*
29594275 AATGAAAAGGGATAGCTTCGGCTATCAAAAC
1 AATGAAAAGGGATAGCCTCGGCTATCAAAAC
*
29594306 AATGAAAAGGGATAGCCTCGGCTATC-AAAT
1 AATGAAAAGGGATAGCCTCGGCTATCAAAAC
*
29594336 TATGAAAAGGGAT
1 AATGAAAAGGGAT
29594349 GGTGACGACC
Statistics
Matches: 40, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 15 0.38
31 25 0.62
ACGTcount: A:0.42, C:0.14, G:0.24, T:0.20
Consensus pattern (31 bp):
AATGAAAAGGGATAGCCTCGGCTATCAAAAC
Found at i:29594363 original size:30 final size:30
Alignment explanation
Indices: 29594329--29594513 Score: 94
Period size: 30 Copynumber: 6.2 Consensus size: 30
29594319 AGCCTCGGCT
29594329 ATCAAATTATGAAAAGGGATGGTGACGACC
1 ATCAAATTATGAAAAGGGATGGTGACGACC
* * *
29594359 ATC-AATAATTAAAAGGGATGGTGACGACT
1 ATCAAATTATGAAAAGGGATGGTGACGACC
** ** * * *
29594388 ATTGAACAATGAAAAGGGATAGCT-TC-AGCT
1 ATCAAATTATGAAAAGGGAT-GGTGACGA-CC
* * * ** * ***
29594418 ATCGAATTGTGAAAAAGGATAACT-TCGGGT
1 ATCAAATTATGAAAAGGGAT-GGTGACGACC
* *
29594448 ATCAAATTATGAAACGGGATGGTGATGACC
1 ATCAAATTATGAAAAGGGATGGTGACGACC
*
29594478 GTCAACA--ATGAAAAGGGATGGTGACGACC
1 ATCAA-ATTATGAAAAGGGATGGTGACGACC
29594507 ATCAAAT
1 ATCAAAT
29594514 AATAATCGAG
Statistics
Matches: 117, Mismatches: 31, Indels: 15
0.72 0.19 0.09
Matches are distributed among these distances:
28 1 0.01
29 51 0.44
30 62 0.53
31 3 0.03
ACGTcount: A:0.39, C:0.13, G:0.25, T:0.22
Consensus pattern (30 bp):
ATCAAATTATGAAAAGGGATGGTGACGACC
Found at i:29594489 original size:29 final size:29
Alignment explanation
Indices: 29594456--29594511 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
29594446 GTATCAAATT
* * *
29594456 ATGAAACGGGATGGTGATGACCGTCAACA
1 ATGAAAAGGGATGGTGACGACCATCAACA
29594485 ATGAAAAGGGATGGTGACGACCATCAA
1 ATGAAAAGGGATGGTGACGACCATCAA
29594512 ATAATAATCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.38, C:0.16, G:0.30, T:0.16
Consensus pattern (29 bp):
ATGAAAAGGGATGGTGACGACCATCAACA
Found at i:29594492 original size:119 final size:120
Alignment explanation
Indices: 29594275--29594505 Score: 329
Period size: 119 Copynumber: 1.9 Consensus size: 120
29594265 ATCATCGGCT
* * *
29594275 AATGAAAAGGGATAGCTTCGGCTATCAAAACAATGAAAAGGGATAGCCTCGGCTATCAAATTATG
1 AATGAAAAGGGATAGCTTCAGCTATCAAAACAATGAAAAAGGATAACCTCGGCTATCAAATTATG
* *
29594340 AAAAGGGATGGTGACGACCATCAATAATTAAAAGGGATGGTGACGACTATTGAAC
66 AAAAGGGATGGTGACGACCATCAACAATGAAAAGGGATGGTGACGACTATTGAAC
* *** * *
29594395 AATGAAAAGGGATAGCTTCAGCTATC-GAATTGTGAAAAAGGATAACTTCGGGTATCAAATTATG
1 AATGAAAAGGGATAGCTTCAGCTATCAAAACAATGAAAAAGGATAACCTCGGCTATCAAATTATG
* * *
29594459 AAACGGGATGGTGATGACCGTCAACAATGAAAAGGGATGGTGACGAC
66 AAAAGGGATGGTGACGACCATCAACAATGAAAAGGGATGGTGACGAC
29594506 CATCAAATAA
Statistics
Matches: 97, Mismatches: 14, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
119 72 0.74
120 25 0.26
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.21
Consensus pattern (120 bp):
AATGAAAAGGGATAGCTTCAGCTATCAAAACAATGAAAAAGGATAACCTCGGCTATCAAATTATG
AAAAGGGATGGTGACGACCATCAACAATGAAAAGGGATGGTGACGACTATTGAAC
Found at i:29598447 original size:14 final size:14
Alignment explanation
Indices: 29598428--29598467 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
29598418 TTGATTGCCA
29598428 GTAAAATGTTTTCC
1 GTAAAATGTTTTCC
* *
29598442 GTAAAATGATTTCT
1 GTAAAATGTTTTCC
*
29598456 GGAAAATGTTTT
1 GTAAAATGTTTT
29598468 ACTTTTCTGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (14 bp):
GTAAAATGTTTTCC
Found at i:29598480 original size:34 final size:35
Alignment explanation
Indices: 29598436--29598502 Score: 91
Period size: 35 Copynumber: 1.9 Consensus size: 35
29598426 CAGTAAAATG
* * *
29598436 TTTTCCGTAAAA-TGATTTCTGGAAAATGTTTTAC
1 TTTTCCGTAAAATTAATTACTGGAAAATATTTTAC
*
29598470 TTTTCTGTAAAATTAATTACTGGAAAATATTTT
1 TTTTCCGTAAAATTAATTACTGGAAAATATTTT
29598503 TTGGTGTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 11 0.39
35 17 0.61
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATTAATTACTGGAAAATATTTTAC
Found at i:29604893 original size:21 final size:21
Alignment explanation
Indices: 29604869--29604912 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
29604859 TTTTTTTTGC
29604869 AAAATCA-AAATTTTCTTTAAA
1 AAAATCATAAATTTTC-TTAAA
*
29604890 AAAATCATTAATTTTCTTAAA
1 AAAATCATAAATTTTCTTAAA
29604911 AA
1 AA
29604913 TTAAAACTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (21 bp):
AAAATCATAAATTTTCTTAAA
Found at i:29606023 original size:42 final size:42
Alignment explanation
Indices: 29605978--29606359 Score: 509
Period size: 42 Copynumber: 9.1 Consensus size: 42
29605968 TATACAAAGT
*
29605978 AATGAAAAGTAAATGGACCTCCACACCTGGGCCAT-TAAATGT
1 AATGAAAAGTAAATGGACCTCCACACCTGGGCC-TCTAAATGC
*
29606020 AATGAAAAGTAAATGGACCTCCACACTTGGGCCTCTAAATGC
1 AATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGC
** *
29606062 AACAAAAAGTAAATGGACCTCCACACCTAGGCCTCTAAATGC
1 AATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGC
* * * *
29606104 AATG-AAAGTGAATGGACTTCCACACCTGGGCCTTTAAATGT
1 AATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGC
* ** * * *
29606145 AATAAAAAGCGAATGGACCTCTACACCCGGGCCTTTAAATGC
1 AATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGC
29606187 AATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGC
1 AATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGC
* * *
29606229 AATAAAAAGTAAATGGACCTCCACACTTGGGCTTCTAAATGC
1 AATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGC
* *
29606271 AATGAAAAGTGAATGGACATCCACACCTGGGCCTCTAAATGC
1 AATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGC
* * * * *
29606313 AAT-TAAAGTAAACGGGCCTCCACACTTGGGCCTCGAAATGC
1 AATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGC
29606354 AATGAA
1 AATGAA
29606360 TGCTTTCTTT
Statistics
Matches: 296, Mismatches: 41, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
41 70 0.24
42 226 0.76
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (42 bp):
AATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGC
Found at i:29606205 original size:125 final size:124
Alignment explanation
Indices: 29605978--29606359 Score: 523
Period size: 125 Copynumber: 3.0 Consensus size: 124
29605968 TATACAAAGT
* *
29605978 AATGAAAAGTAAATGGACCTCCACACCTGGGCCATTAAATGTAATGAAAAGTAAATGGACCTCCA
1 AATG-AAAGTAAATGGACCTCCACACCTGGGCCTTTAAATGTAATGAAAAGTGAATGGACCTCCA
* * *
29606043 CACTTGGGCCTCTAAATGCAACAAAAAGTAAATGGACCTCCACACCTAGGCCTCTAAATGC
65 CACCTGGGCCTCTAAATGCAA-TAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGC
* * * * *
29606104 AATGAAAGTGAATGGACTTCCACACCTGGGCCTTTAAATGTAATAAAAAGCGAATGGACCTCTAC
1 AATGAAAGTAAATGGACCTCCACACCTGGGCCTTTAAATGTAATGAAAAGTGAATGGACCTCCAC
* *
29606169 ACCCGGGCCTTTAAATGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGC
66 ACCTGGGCCTCTAAATGCAAT-AAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGC
* * * *
29606229 AATAAAAAGTAAATGGACCTCCACACTTGGG-CTTCTAAATGCAATGAAAAGTGAATGGACATCC
1 AAT-GAAAGTAAATGGACCTCCACACCTGGGCCTT-TAAATGTAATGAAAAGTGAATGGACCTCC
* * * * *
29606293 ACACCTGGGCCTCTAAATGCAATTAAAGTAAACGGGCCTCCACACTTGGGCCTCGAAATGC
64 ACACCTGGGCCTCTAAATGCAATAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGC
29606354 AATGAA
1 AATGAA
29606360 TGCTTTCTTT
Statistics
Matches: 224, Mismatches: 29, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
124 2 0.01
125 150 0.67
126 72 0.32
ACGTcount: A:0.36, C:0.24, G:0.19, T:0.21
Consensus pattern (124 bp):
AATGAAAGTAAATGGACCTCCACACCTGGGCCTTTAAATGTAATGAAAAGTGAATGGACCTCCAC
ACCTGGGCCTCTAAATGCAATAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGC
Found at i:29609794 original size:23 final size:23
Alignment explanation
Indices: 29609764--29609812 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 23
29609754 ACACTCCATG
29609764 ATATCAATTGCACC-ATAGTGCCA
1 ATATCAATTGCACCGA-AGTGCCA
29609787 ATATCAATTGCACCGAAGTGCCA
1 ATATCAATTGCACCGAAGTGCCA
29609810 ATA
1 ATA
29609813 ATACTCACGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 24 0.96
24 1 0.04
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.24
Consensus pattern (23 bp):
ATATCAATTGCACCGAAGTGCCA
Found at i:29613234 original size:42 final size:41
Alignment explanation
Indices: 29613186--29613317 Score: 156
Period size: 42 Copynumber: 3.1 Consensus size: 41
29613176 TACAAGTTTA
* *
29613186 TACTTCAATTTGGTCAATGATGCACTTATGTGCCAGTATATT
1 TACTTCAATTT-GTCAATGATGCACTTATATGTCAGTATATT
* * *
29613228 TACTTCAATTTATTCGATGATGCACTTATATGTCAGTATAAT
1 TACTTCAATTT-GTCAATGATGCACTTATATGTCAGTATATT
* * * *
29613270 TGCTTCAGTTTGTCCAATGATGCACTTACATGTCAATATATT
1 TACTTCAATTTGT-CAATGATGCACTTATATGTCAGTATATT
29613312 TACTTC
1 TACTTC
29613318 TGTACATCTA
Statistics
Matches: 75, Mismatches: 14, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
41 1 0.01
42 74 0.99
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.42
Consensus pattern (41 bp):
TACTTCAATTTGTCAATGATGCACTTATATGTCAGTATATT
Found at i:29613331 original size:42 final size:42
Alignment explanation
Indices: 29613244--29613340 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 42
29613234 AATTTATTCG
* * * ***
29613244 ATGATGCACTTATATGTCAGTATAATTGCTTCAGTTTGTCCA
1 ATGATGCACTTACATGTCAATATAATTACTTCAGTACATCCA
* * *
29613286 ATGATGCACTTACATGTCAATATATTTACTTCTGTACATCTA
1 ATGATGCACTTACATGTCAATATAATTACTTCAGTACATCCA
29613328 ATGATGCACTTAC
1 ATGATGCACTTAC
29613341 GTGCGAACAT
Statistics
Matches: 46, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (42 bp):
ATGATGCACTTACATGTCAATATAATTACTTCAGTACATCCA
Found at i:29613436 original size:43 final size:42
Alignment explanation
Indices: 29613360--29613510 Score: 158
Period size: 43 Copynumber: 3.5 Consensus size: 42
29613350 TGATTACTTT
* ** * *
29613360 GGTTTATCCGATGATGCTTTGTGTGTGCCAGTATAATTGCTTC
1 GGTTTATCCAATGATGCACTATGTGTGCTAGTATAATT-CTTC
* * * *
29613403 GGCTTGTCCAATGATACACTATGTGTGCTAGTATACATTCTTT
1 GGTTTATCCAATGATGCACTATGTGTGCTAGTATA-ATTCTTC
* * *
29613446 GGTTTATCCGATGATGCACTATGTGTGCTAGAATATTTTCTTC
1 GGTTTATCCAATGATGCACTATGTGTGCTAGTATA-ATTCTTC
*
29613489 GGTTTATCTAATGATGCACTAT
1 GGTTTATCCAATGATGCACTAT
29613511 AGTACCAGAT
Statistics
Matches: 88, Mismatches: 19, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
43 85 0.97
44 3 0.03
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.41
Consensus pattern (42 bp):
GGTTTATCCAATGATGCACTATGTGTGCTAGTATAATTCTTC
Found at i:29616375 original size:15 final size:15
Alignment explanation
Indices: 29616357--29616389 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
29616347 TTACTAATTA
29616357 ATTCTTTATTTTTTT
1 ATTCTTTATTTTTTT
29616372 ATTCTTTATTTTTTT
1 ATTCTTTATTTTTTT
29616387 ATT
1 ATT
29616390 TTCAGGTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.15, C:0.06, G:0.00, T:0.79
Consensus pattern (15 bp):
ATTCTTTATTTTTTT
Found at i:29617939 original size:21 final size:22
Alignment explanation
Indices: 29617913--29617959 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
29617903 CTCTGCTCAA
*
29617913 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
29617934 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
29617956 ACTC
1 ACTC
29617960 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:29633358 original size:30 final size:30
Alignment explanation
Indices: 29633322--29633381 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
29633312 ACTTCCTTTG
29633322 CAGTTTTATACTTGCACCTACAAAAGATAC
1 CAGTTTTATACTTGCACCTACAAAAGATAC
29633352 CAGTTTTATACTTGCACCTACAAAAGATAC
1 CAGTTTTATACTTGCACCTACAAAAGATAC
29633382 GAACATACTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.37, C:0.23, G:0.10, T:0.30
Consensus pattern (30 bp):
CAGTTTTATACTTGCACCTACAAAAGATAC
Found at i:29634827 original size:17 final size:18
Alignment explanation
Indices: 29634800--29634847 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
29634790 AAATATTTAT
29634800 ATTTATATAAT-TAAAATA
1 ATTT-TATAATGTAAAATA
* *
29634818 ATTTTATAATGTGAATTA
1 ATTTTATAATGTAAAATA
29634836 ATTTTATAATGT
1 ATTTTATAATGT
29634848 CACATAGTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
17 6 0.22
18 21 0.78
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (18 bp):
ATTTTATAATGTAAAATA
Found at i:29636687 original size:7 final size:7
Alignment explanation
Indices: 29636675--29636699 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
29636665 TTATTTTAGT
29636675 TATTTAA
1 TATTTAA
29636682 TATTTAA
1 TATTTAA
29636689 TATTTAA
1 TATTTAA
29636696 TATT
1 TATT
29636700 CATCTCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TATTTAA
Found at i:29639044 original size:13 final size:12
Alignment explanation
Indices: 29639026--29639059 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
29639016 GCCCACATAC
29639026 ATAAAATAATAAA
1 ATAAAATAA-AAA
29639039 ATAAAATAAAAA
1 ATAAAATAAAAA
29639051 AT-AAATAAA
1 ATAAAATAAA
29639060 TGTCCAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 7 0.33
12 5 0.24
13 9 0.43
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (12 bp):
ATAAAATAAAAA
Found at i:29639340 original size:16 final size:15
Alignment explanation
Indices: 29639299--29639340 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
29639289 GCTCCCCCGC
29639299 GCATGCTGCGCCTCT
1 GCATGCTGCGCCTCT
*
29639314 GCACGCCTGCGCCTCT
1 GCATG-CTGCGCCTCT
29639330 GCATGCGTGCG
1 GCATGC-TGCG
29639341 TCTCCTCCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 5 0.22
16 18 0.78
ACGTcount: A:0.07, C:0.40, G:0.31, T:0.21
Consensus pattern (15 bp):
GCATGCTGCGCCTCT
Found at i:29651803 original size:44 final size:44
Alignment explanation
Indices: 29651755--29651965 Score: 184
Period size: 44 Copynumber: 4.9 Consensus size: 44
29651745 TGGAACAAAC
*
29651755 TGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAGCAGAT
1 TGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAGTAGAT
* * * *
29651799 TGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAGTGGAT
1 TGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAGTAGAT
* * * * *
29651843 TAAAG-TA-AAGGATCTTATCTCTCT-AAAGTTACAGTAGAGTAGA-
1 TGAAGCCAGAA--ATCTTATCTCCCTGAGA-TTACAGTGGAGTAGAT
* * *
29651886 T-CA--CATCAAATCTTATCTCCCTGAGATTACAGCGGAGTAGAT
1 TGAAGCCA-GAAATCTTATCTCCCTGAGATTACAGTGGAGTAGAT
* * * *
29651928 TGAAGCCAGTAATCCTATTTCCCTGGGATTACAGTGGA
1 TGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGA
29651966 ACGGATTAAA
Statistics
Matches: 132, Mismatches: 25, Indels: 20
0.75 0.14 0.11
Matches are distributed among these distances:
41 26 0.20
42 5 0.04
43 8 0.06
44 91 0.69
45 2 0.02
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.28
Consensus pattern (44 bp):
TGAAGCCAGAAATCTTATCTCCCTGAGATTACAGTGGAGTAGAT
Found at i:29651994 original size:129 final size:129
Alignment explanation
Indices: 29651764--29652046 Score: 431
Period size: 129 Copynumber: 2.2 Consensus size: 129
29651754 CTGAAGCCAG
* *
29651764 AAATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATT
1 AAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATT
** *
29651829 ACAGTGGAGTGGATTAAAGTAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCACATC
66 ACAGTGGAACGGATTAAAGTAAAGAATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCACATC
* * *
29651893 AAATCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGCCAGTAATCCTATTTCCCTGGGATT
1 AAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATT
* * *
29651958 ACAGTGGAACGGATTAAAGTAAAGAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCATATT
66 ACAGTGGAACGGATTAAAGTAAAGAATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCACATC
** * *
29652022 AGGTTTTATCTCCCTGATATTACAG
1 AAATCTTATCTCCCTGAGATTACAG
29652047 TGAAATAGAC
Statistics
Matches: 139, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
129 139 1.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.31
Consensus pattern (129 bp):
AAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCCAGTAATCCTATCTCCCTGAGATT
ACAGTGGAACGGATTAAAGTAAAGAATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCACATC
Found at i:29658118 original size:39 final size:39
Alignment explanation
Indices: 29658073--29658268 Score: 230
Period size: 39 Copynumber: 5.0 Consensus size: 39
29658063 ATTCACTTTT
* * * * *
29658073 AAGCATATATCATATTACACATATAATCACCTAACATAC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* * * * *
29658112 AAGCATATATTACAATACTCAAATAATCATAGAACATTT
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
** *
29658151 AAGCATATATCACAATACTTGTATAATCTCATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* * *
29658190 AAGCATATATCATAATACTCATATAATCGCATAACATTT
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
* *
29658229 AAGCATATATCACATTACTCGTATAATCACATAACATTC
1 AAGCATATATCACAATACTCATATAATCACATAACATTC
29658268 A
1 A
29658269 TAATTTAAGA
Statistics
Matches: 129, Mismatches: 28, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 129 1.00
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.31
Consensus pattern (39 bp):
AAGCATATATCACAATACTCATATAATCACATAACATTC
Found at i:29658266 original size:78 final size:78
Alignment explanation
Indices: 29658070--29658268 Score: 272
Period size: 78 Copynumber: 2.6 Consensus size: 78
29658060 CACATTCACT
* * * * * *
29658070 TTTAAGCATATATCATATTACACATATAATCACCTAACATACAAGCATATATTACAATACTCAAA
1 TTTAAGCATATATCACATTACTCGTATAATCACATAACATTCAAGCATATATCACAATACTCAAA
*
29658135 TAATCATAGAACA
66 TAATCACAGAACA
* * * * *
29658148 TTTAAGCATATATCACAATACTTGTATAATCTCATAACATTCAAGCATATATCATAATACTCATA
1 TTTAAGCATATATCACATTACTCGTATAATCACATAACATTCAAGCATATATCACAATACTCAAA
* *
29658213 TAATCGCATAACA
66 TAATCACAGAACA
29658226 TTTAAGCATATATCACATTACTCGTATAATCACATAACATTCA
1 TTTAAGCATATATCACATTACTCGTATAATCACATAACATTCA
29658269 TAATTTAAGA
Statistics
Matches: 104, Mismatches: 17, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
78 104 1.00
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.32
Consensus pattern (78 bp):
TTTAAGCATATATCACATTACTCGTATAATCACATAACATTCAAGCATATATCACAATACTCAAA
TAATCACAGAACA
Found at i:29662241 original size:41 final size:41
Alignment explanation
Indices: 29662180--29662261 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 41
29662170 TGACCAGGCT
*
29662180 GTGTAACTCACTGTGACCATGTAGCTCAGGGTCACATGGTC
1 GTGTAACTCACTGTGACCATGTAGCTCAGGGTCACAAGGTC
** * * *
29662221 GTGTAACTCTTTGTGTCCATGTGGCTTAGGGTCACAAGGTC
1 GTGTAACTCACTGTGACCATGTAGCTCAGGGTCACAAGGTC
29662262 ATGTCGCCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (41 bp):
GTGTAACTCACTGTGACCATGTAGCTCAGGGTCACAAGGTC
Found at i:29664271 original size:22 final size:23
Alignment explanation
Indices: 29664238--29664281 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 23
29664228 ATAAGAGCCC
29664238 CATATTTTTTAAGGCACTACAAT
1 CATATTTTTTAAGGCACTACAAT
29664261 CATA-TTTTTAAGGCACTACAA
1 CATATTTTTTAAGGCACTACAA
29664282 GTTCGAGCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.36
Consensus pattern (23 bp):
CATATTTTTTAAGGCACTACAAT
Found at i:29669344 original size:20 final size:20
Alignment explanation
Indices: 29669315--29669371 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
29669305 CACACCAAAG
*
29669315 GGCACCGAAGTGCTAATAGA
1 GGCACCGAAGTGCTAACAGA
* * *
29669335 GGCACAGAAGTGCAAACGGA
1 GGCACCGAAGTGCTAACAGA
*
29669355 GGCACCGAAGAGCTAAC
1 GGCACCGAAGTGCTAAC
29669372 CCGTACACGC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.37, C:0.23, G:0.32, T:0.09
Consensus pattern (20 bp):
GGCACCGAAGTGCTAACAGA
Found at i:29673658 original size:42 final size:42
Alignment explanation
Indices: 29673598--29673708 Score: 154
Period size: 42 Copynumber: 2.7 Consensus size: 42
29673588 CATGTTCTTT
* *
29673598 GTCTTTAGCGGCGCTTTTTTCTAAGCGTCGCTAAAGAACATG
1 GTCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATG
*
29673640 GTCTTTAGCGGCGTTTTTTTCTAAGCGCCTCTAAAGAACATG
1 GTCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATG
* * *
29673682 GTC--TAGTGACGTTTTTTTCTAAACGCC
1 GTCTTTAGCGGCGTTTTTTTCTAAGCGCC
29673709 ATTATTTTTG
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 21 0.33
42 42 0.67
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.36
Consensus pattern (42 bp):
GTCTTTAGCGGCGTTTTTTTCTAAGCGCCGCTAAAGAACATG
Found at i:29676409 original size:19 final size:19
Alignment explanation
Indices: 29676385--29676426 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
29676375 GGACTACGTT
*
29676385 GGGGAACTGTTAGGGATTA
1 GGGGAAATGTTAGGGATTA
* *
29676404 GGGGAAATTTTAGGGATTT
1 GGGGAAATGTTAGGGATTA
29676423 GGGG
1 GGGG
29676427 GAGATGAGAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.45, T:0.29
Consensus pattern (19 bp):
GGGGAAATGTTAGGGATTA
Found at i:29677508 original size:21 final size:21
Alignment explanation
Indices: 29677484--29677530 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
29677474 CATTAAACTT
*
29677484 TAAACTAAAAAACCCAAATCC
1 TAAACTAAAAAACCCAAACCC
** *
29677505 TAAACTCTAAACCCCAAACCC
1 TAAACTAAAAAACCCAAACCC
29677526 TAAAC
1 TAAAC
29677531 CCTTACCCCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.51, C:0.34, G:0.00, T:0.15
Consensus pattern (21 bp):
TAAACTAAAAAACCCAAACCC
Found at i:29677540 original size:21 final size:21
Alignment explanation
Indices: 29677496--29677567 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 21
29677486 AACTAAAAAA
* *
29677496 CCCAAATCCTAAACTCTAAAC
1 CCCAAAACCTAAACCCTAAAC
* * *
29677517 CCCAAACCCTAAACCCTTACC
1 CCCAAAACCTAAACCCTAAAC
* *
29677538 CCCAAAAACTAAACCCCAAAC
1 CCCAAAACCTAAACCCTAAAC
* *
29677559 TCAAAAACC
1 CCCAAAACC
29677568 AAGAATCCCA
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.44, C:0.43, G:0.00, T:0.12
Consensus pattern (21 bp):
CCCAAAACCTAAACCCTAAAC
Found at i:29677850 original size:15 final size:16
Alignment explanation
Indices: 29677822--29677852 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
29677812 CCCTAACCCG
29677822 ACCCCTATAACCCTAA
1 ACCCCTATAACCCTAA
29677838 ACCCCTA-AACCCTAA
1 ACCCCTATAACCCTAA
29677853 GNNNNNNNNN
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.39, C:0.45, G:0.00, T:0.16
Consensus pattern (16 bp):
ACCCCTATAACCCTAA
Found at i:29678267 original size:41 final size:41
Alignment explanation
Indices: 29678219--29678324 Score: 160
Period size: 41 Copynumber: 2.6 Consensus size: 41
29678209 GGTTTTTTTT
* *
29678219 GCGGCGCTTTTCAGAAAACGCCGCTAAAGACAAGATCATTA
1 GCGGCGCTTTTCAAAAAACGCCGCTAAAGACAAGAGCATTA
* *
29678260 GCGGCGC-TTTCTAAAAAACGCCGCTAAAGGCAGGAGCATTA
1 GCGGCGCTTTTC-AAAAAACGCCGCTAAAGACAAGAGCATTA
29678301 GCGGCGCTTTTCAAAAAACGCCGC
1 GCGGCGCTTTTCAAAAAACGCCGC
29678325 AACAGGGACA
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
40 4 0.07
41 51 0.86
42 4 0.07
ACGTcount: A:0.31, C:0.26, G:0.25, T:0.18
Consensus pattern (41 bp):
GCGGCGCTTTTCAAAAAACGCCGCTAAAGACAAGAGCATTA
Found at i:29678473 original size:93 final size:92
Alignment explanation
Indices: 29678315--29678491 Score: 255
Period size: 93 Copynumber: 1.9 Consensus size: 92
29678305 CGCTTTTCAA
*
29678315 AAAACGCCGCAACAGGGACAAAAACTCGGAAACGACGTCGTTGGCCTTAGGTTTTTCGCGGCGCT
1 AAAACCCCGCAACAGGGACAAAAACTCGGAAACGACGTCGTTGGCCTTAGGTTTTTCGCGGCGCT
*
29678380 TTTTAGAAATCGCCGCTAAGTCCCCCG
66 TTTCAGAAATCGCCGCTAAGTCCCCCG
* ** * * * *
29678407 AAAACCCCGCTACAGGTCCAAAAACTCAGTAAACGGCGTCGTTGGCCTTATGTTTTTTGCGGCGC
1 AAAACCCCGCAACAGGGACAAAAACTC-GGAAACGACGTCGTTGGCCTTAGGTTTTTCGCGGCGC
*
29678472 TTTTCATAAATCGCCGCTAA
65 TTTTCAGAAATCGCCGCTAA
29678492 TGCTTATTAT
Statistics
Matches: 74, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
92 23 0.31
93 51 0.69
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (92 bp):
AAAACCCCGCAACAGGGACAAAAACTCGGAAACGACGTCGTTGGCCTTAGGTTTTTCGCGGCGCT
TTTCAGAAATCGCCGCTAAGTCCCCCG
Found at i:29683482 original size:19 final size:19
Alignment explanation
Indices: 29683447--29683500 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
29683437 TTAAAAAATA
* *
29683447 TAAA-ATTTTAAAATTTTG
1 TAAATATTTTGAATTTTTG
29683465 TAAATATTTTGAATTTTTG
1 TAAATATTTTGAATTTTTG
29683484 -AAGATTATTTTGAATTT
1 TAA-A-TATTTTGAATTT
29683501 GTTTTTGTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 6 0.19
19 13 0.42
20 12 0.39
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (19 bp):
TAAATATTTTGAATTTTTG
Found at i:29684954 original size:15 final size:15
Alignment explanation
Indices: 29684934--29684989 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
29684924 ATTCAATATT
29684934 AATATTTTAATAATA
1 AATATTTTAATAATA
*
29684949 AATATTTATTGCAATTATA
1 AATA-TT-TT--AATAATA
*
29684968 AATATATTAATAATA
1 AATATTTTAATAATA
29684983 AAT-TTTT
1 AATATTTT
29684990 TGTAGTATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 9
0.72 0.09 0.20
Matches are distributed among these distances:
14 3 0.09
15 13 0.39
16 2 0.06
17 4 0.12
18 1 0.03
19 10 0.30
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:29690248 original size:2 final size:2
Alignment explanation
Indices: 29690241--29690274 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
29690231 TACTAGTTAC
29690241 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
29690275 GAGAACTAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Done.