Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 96 of 145
Found at i:31946470 original size:16 final size:16
Alignment explanation
Indices: 31946449--31946493 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
31946439 ATATATTTTC
* *
31946449 TAAATATAATAATGTA
1 TAAATAAAATAATGAA
*
31946465 TAAATAAAATCATGAA
1 TAAATAAAATAATGAA
*
31946481 TATATAAAATAAT
1 TAAATAAAATAAT
31946494 ACTTGAAATC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (16 bp):
TAAATAAAATAATGAA
Found at i:31947117 original size:22 final size:21
Alignment explanation
Indices: 31947087--31947143 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
31947077 AGCCTTGCTC
* *
31947087 TTATTAAAAATTAGAAATAAAA
1 TTATAAAAAATTAAAAAT-AAA
*
31947109 TTATAAAAAATAAAAAATAAA
1 TTATAAAAAATTAAAAATAAA
*
31947130 TTTTAGAAAAATTA
1 TTATA-AAAAATTA
31947144 TTAAATTTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 7 0.24
22 22 0.76
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.32
Consensus pattern (21 bp):
TTATAAAAAATTAAAAATAAA
Found at i:31947200 original size:17 final size:16
Alignment explanation
Indices: 31947167--31947198 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
31947157 AAATATAAAA
31947167 AAATTAGATTTTTTTT
1 AAATTAGATTTTTTTT
31947183 AAATTAGATTTTTTTT
1 AAATTAGATTTTTTTT
31947199 TATAAAAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.62
Consensus pattern (16 bp):
AAATTAGATTTTTTTT
Found at i:31947413 original size:90 final size:90
Alignment explanation
Indices: 31947286--31947483 Score: 272
Period size: 90 Copynumber: 2.2 Consensus size: 90
31947276 GCTTAAATTT
* * * * *
31947286 TTTTTTGAAAAAGTTTTAGGGTCTTTTTGATGCATTTTGAAAGTTCAAGTACCTAATTGAGTGCA
1 TTTTTTGAAAAAGTTTGAGGGCCTGTTTGATGCATTTTGAAAGTTCAAGTACCCAAATGAGTGCA
* *
31947351 AAAAAAAAGTAGGGGCTTAATTGCGA
66 AAAAAAAAGAAGGGGCTTAATTAC-A
* **
31947377 TTTTTT-AAAAGGTTTGAGGGCCTGTTTGATGCATTTTGAGGGTTCAAGTACCCAAATGAGTGCA
1 TTTTTTGAAAAAGTTTGAGGGCCTGTTTGATGCATTTTGAAAGTTCAAGTACCCAAATGAGTGCA
*
31947441 AAAAAATAGAAGGGGCTTAATTACA
66 AAAAAAAAGAAGGGGCTTAATTACA
*
31947466 TTTTTTGAAAAATTTTGA
1 TTTTTTGAAAAAGTTTGA
31947484 CGACTTTTTG
Statistics
Matches: 93, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
89 7 0.08
90 80 0.86
91 6 0.06
ACGTcount: A:0.33, C:0.09, G:0.22, T:0.36
Consensus pattern (90 bp):
TTTTTTGAAAAAGTTTGAGGGCCTGTTTGATGCATTTTGAAAGTTCAAGTACCCAAATGAGTGCA
AAAAAAAAGAAGGGGCTTAATTACA
Found at i:31969682 original size:49 final size:49
Alignment explanation
Indices: 31969579--31969756 Score: 153
Period size: 49 Copynumber: 3.6 Consensus size: 49
31969569 AGATCCCATG
* * * **
31969579 TAAGACCATGTCTGGGACTTGGCATTGGCACTAAGATGAGAGGTGCCATG
1 TAAGACCATGTCTGGGACATGG-ATTGGCACCAAGATGAGAGGTCCCACA
* * *
31969629 TAAGACCATGTTTGGGACAT-GAGTTGGCACCGAGATGAGAGGTCCCCCA
1 TAAGACCATGTCTGGGACATGGA-TTGGCACCAAGATGAGAGGTCCCACA
* * * * * **
31969678 TAAGACCATGTCTGGGACATGGCATGGGCACCTATATGAGA-CTCTCATG
1 TAAGACCATGTCTGGGACATGG-ATTGGCACCAAGATGAGAGGTCCCACA
* *
31969727 TAAGACCATATCTGGGATATGGCATTGGCA
1 TAAGACCATGTCTGGGACATGG-ATTGGCA
31969757 GTAAAAGAAA
Statistics
Matches: 105, Mismatches: 20, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
48 1 0.01
49 70 0.67
50 33 0.31
51 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (49 bp):
TAAGACCATGTCTGGGACATGGATTGGCACCAAGATGAGAGGTCCCACA
Found at i:31977314 original size:51 final size:51
Alignment explanation
Indices: 31977256--31977355 Score: 173
Period size: 51 Copynumber: 2.0 Consensus size: 51
31977246 ATGTGTTTCA
* * *
31977256 TCAATGTGCTGCAGTAGTGCGGAAATTAAGGTGTTGGTCCTTACTCGTTAG
1 TCAATGTGCTGCAATAGTGCGAAAATTAAGATGTTGGTCCTTACTCGTTAG
31977307 TCAATGTGCTGCAATAGTGCGAAAATTAAGATGTTGGTCCTTACTCGTT
1 TCAATGTGCTGCAATAGTGCGAAAATTAAGATGTTGGTCCTTACTCGTT
31977356 TACTTGAATG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.24, C:0.16, G:0.26, T:0.34
Consensus pattern (51 bp):
TCAATGTGCTGCAATAGTGCGAAAATTAAGATGTTGGTCCTTACTCGTTAG
Found at i:31978434 original size:41 final size:41
Alignment explanation
Indices: 31978366--31978812 Score: 554
Period size: 41 Copynumber: 10.9 Consensus size: 41
31978356 TCTAACAAAT
* *
31978366 TCGGGGCTTTAGCGGCGTTTTTAAAAAAGCGCCACTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * * *
31978407 TCAGTGCTTTAGCGGTGTTTCTGAAAAAGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * * *
31978448 TCAGTGCTTTAGCGGCGTTTCTGAAAAAGCGCTGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * *
31978489 TCGGTGCTTTAGCTGCGTTTCTGAAAAAGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
*
31978530 TCGGTGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* ** *
31978571 T-GGGGATTTAGCGGCGTTTTTGGGAAAGCGCTGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * **
31978611 TTGGGGCTATAGCGGCGTTTTTGGGAAAGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * **
31978652 TTGGGGCTATAGCGGCGTTTTTGGGAAAGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * * **
31978693 TTGGGGCTATAGCAGCGTTTTTGGGAAAGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
* * ** *
31978734 TAGGGGCTTTAGCGGGGTTTTTGAAAAAGCGTTGCCAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
*
31978775 TAGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
1 TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
31978813 AAACATTTTA
Statistics
Matches: 370, Mismatches: 35, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
40 35 0.09
41 335 0.91
ACGTcount: A:0.20, C:0.20, G:0.32, T:0.28
Consensus pattern (41 bp):
TCGGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGC
Found at i:31978949 original size:23 final size:26
Alignment explanation
Indices: 31978896--31978950 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 26
31978886 ATCTTCAGAA
*
31978896 AAAATAATAACACGTGGAAATAATTT
1 AAAATAATAACACATGGAAATAATTT
*
31978922 GAAATAA-AACACATGGAAA-AA-TT
1 AAAATAATAACACATGGAAATAATTT
31978945 AAAATA
1 AAAATA
31978951 CTATTATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
23 7 0.27
24 2 0.08
25 11 0.42
26 6 0.23
ACGTcount: A:0.60, C:0.07, G:0.11, T:0.22
Consensus pattern (26 bp):
AAAATAATAACACATGGAAATAATTT
Found at i:31979156 original size:15 final size:15
Alignment explanation
Indices: 31979136--31979196 Score: 67
Period size: 14 Copynumber: 4.3 Consensus size: 15
31979126 TATTTTAAGG
*
31979136 TTTAGGGAGTATGGA
1 TTTAGGGATTATGGA
31979151 TTTAGGGATTAT-GA
1 TTTAGGGATTATGGA
*
31979165 ATTAGGGATTATGG-
1 TTTAGGGATTATGGA
31979179 TTTAAGGG-TTA-GGA
1 TTT-AGGGATTATGGA
31979193 TTTA
1 TTTA
31979197 AGGTTTAGGG
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
13 3 0.08
14 21 0.52
15 16 0.40
ACGTcount: A:0.28, C:0.00, G:0.33, T:0.39
Consensus pattern (15 bp):
TTTAGGGATTATGGA
Found at i:31979191 original size:21 final size:21
Alignment explanation
Indices: 31979166--31979241 Score: 66
Period size: 21 Copynumber: 3.6 Consensus size: 21
31979156 GGATTATGAA
*
31979166 TTAGGGATTATGGTTTAAGGG
1 TTAGGGATTAAGGTTTAAGGG
*
31979187 TTA-GGATTTAAGGTTTAGGGG
1 TTAGGGA-TTAAGGTTTAAGGG
* * *
31979208 TTAGGGGTTAGGAGTTTAAGGT
1 TTAGGGATTAAG-GTTTAAGGG
31979230 TTAGAGG-TTAAG
1 TTAG-GGATTAAG
31979242 AGTTAAAGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
20 3 0.07
21 22 0.50
22 17 0.39
23 2 0.05
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.37
Consensus pattern (21 bp):
TTAGGGATTAAGGTTTAAGGG
Found at i:31979196 original size:14 final size:14
Alignment explanation
Indices: 31979179--31979233 Score: 56
Period size: 14 Copynumber: 3.9 Consensus size: 14
31979169 GGGATTATGG
31979179 TTTAAGGGTTAGGA
1 TTTAAGGGTTAGGA
* *
31979193 TTTAAGGTTTAGGG
1 TTTAAGGGTTAGGA
* *
31979207 GTTAGGGGTTAGGA
1 TTTAAGGGTTAGGA
*
31979221 GTTTAAGGTTTAG
1 -TTTAAGGGTTAG
31979234 AGGTTAAGAG
Statistics
Matches: 31, Mismatches: 9, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
14 22 0.71
15 9 0.29
ACGTcount: A:0.24, C:0.00, G:0.38, T:0.38
Consensus pattern (14 bp):
TTTAAGGGTTAGGA
Found at i:31979209 original size:29 final size:28
Alignment explanation
Indices: 31979180--31979261 Score: 110
Period size: 29 Copynumber: 2.9 Consensus size: 28
31979170 GGATTATGGT
*
31979180 TTAAGGGTTAGGATTTAAGGTTTAGGGG
1 TTAAGGGTTAGGATTTAAGGTTTAGAGG
*
31979208 TTAGGGGTTAGGAGTTTAAGGTTTAGAGG
1 TTAAGGGTTAGGA-TTTAAGGTTTAGAGG
* *
31979237 TTAAGAGTTAAAGATTTAAGGTTTA
1 TTAAGGGTT-AGGATTTAAGGTTTA
31979262 AAGATTCATG
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
28 12 0.26
29 32 0.68
30 3 0.06
ACGTcount: A:0.29, C:0.00, G:0.34, T:0.37
Consensus pattern (28 bp):
TTAAGGGTTAGGATTTAAGGTTTAGAGG
Found at i:31979231 original size:7 final size:7
Alignment explanation
Indices: 31979177--31979262 Score: 50
Period size: 7 Copynumber: 12.0 Consensus size: 7
31979167 TAGGGATTAT
31979177 GGTTTAA
1 GGTTTAA
*
31979184 GGGTT-A
1 GGTTTAA
31979190 GGATTTAA
1 GG-TTTAA
*
31979198 GGTTTAG
1 GGTTTAA
* *
31979205 GGGTTAG
1 GGTTTAA
* *
31979212 GGGTTAG
1 GGTTTAA
31979219 GAGTTTAA
1 G-GTTTAA
31979227 GGTTTAGA
1 GGTTTA-A
31979235 GG-TTAA
1 GGTTTAA
*
31979241 GAGTTAAA
1 G-GTTTAA
*
31979249 GATTTAA
1 GGTTTAA
31979256 GGTTTAA
1 GGTTTAA
31979263 AGATTCATGG
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
6 5 0.08
7 43 0.68
8 15 0.24
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.36
Consensus pattern (7 bp):
GGTTTAA
Found at i:31979233 original size:22 final size:22
Alignment explanation
Indices: 31979194--31979259 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 22
31979184 GGGTTAGGAT
* * *
31979194 TTAAG-GTTTAGGGGTTAGGGG
1 TTAAGAGTTTAAGGTTTAGAGG
*
31979215 TTAGGAGTTTAAGGTTTAGAGG
1 TTAAGAGTTTAAGGTTTAGAGG
* *
31979237 TTAAGAGTTAAAGATTTA-AGG
1 TTAAGAGTTTAAGGTTTAGAGG
31979258 TT
1 TT
31979260 TAAAGATTCA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
21 9 0.24
22 28 0.76
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.36
Consensus pattern (22 bp):
TTAAGAGTTTAAGGTTTAGAGG
Found at i:31979262 original size:15 final size:15
Alignment explanation
Indices: 31979222--31979267 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
31979212 GGGTTAGGAG
*
31979222 TTTAAGGTTTAGAG-
1 TTTAAGGTTTAAAGA
*
31979236 GTTAAGAG-TTAAAGA
1 TTTAAG-GTTTAAAGA
31979251 TTTAAGGTTTAAAGA
1 TTTAAGGTTTAAAGA
31979266 TT
1 TT
31979268 CATGGGTCGA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
14 11 0.42
15 15 0.58
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (15 bp):
TTTAAGGTTTAAAGA
Found at i:31979331 original size:25 final size:25
Alignment explanation
Indices: 31979303--31979350 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
31979293 TTAGATTAAT
*
31979303 TTTTTTAATTTATATTTTAAATATG
1 TTTTTTAATTTATATATTAAATATG
31979328 TTTTTTAATTTATATATTAAATA
1 TTTTTTAATTTATATATTAAATA
31979351 ATTTCATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.62
Consensus pattern (25 bp):
TTTTTTAATTTATATATTAAATATG
Found at i:31979521 original size:76 final size:76
Alignment explanation
Indices: 31979430--31979590 Score: 277
Period size: 76 Copynumber: 2.1 Consensus size: 76
31979420 TTAGGTTTAT
*
31979430 ATGGTTTACGATATATGGTTAATTTAAGATTTAAGGCCAATTTAGGAGTTACTATTTTAAGGTTT
1 ATGGTTTACGATATATGATTAATTTAAGATTTAAGGCCAATTTAGGAGTTACTATTTTAAGGTTT
31979495 GGGGATTATAC
66 GGGGATTATAC
* *
31979506 ATGGTTTATGGTATATGATTAATTTAAGATTTAAGGCCAATTTAGGAGTTACTATTTTAAGGTTT
1 ATGGTTTACGATATATGATTAATTTAAGATTTAAGGCCAATTTAGGAGTTACTATTTTAAGGTTT
*
31979571 GGGGATTATAT
66 GGGGATTATAC
31979582 ATGGATTTA
1 ATGG-TTTA
31979591 GGGATTATGG
Statistics
Matches: 80, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
76 76 0.95
77 4 0.05
ACGTcount: A:0.30, C:0.05, G:0.22, T:0.42
Consensus pattern (76 bp):
ATGGTTTACGATATATGATTAATTTAAGATTTAAGGCCAATTTAGGAGTTACTATTTTAAGGTTT
GGGGATTATAC
Found at i:31979607 original size:14 final size:15
Alignment explanation
Indices: 31979581--31979618 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
31979571 GGGGATTATA
31979581 TATGGATTTAGGGAT
1 TATGGATTTAGGGAT
31979596 TATGGA-TTAGGGAT
1 TATGGATTTAGGGAT
31979610 TATGG-TTTA
1 TATGGATTTA
31979619 ACAGTTGAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.26, C:0.00, G:0.32, T:0.42
Consensus pattern (15 bp):
TATGGATTTAGGGAT
Found at i:31979663 original size:21 final size:21
Alignment explanation
Indices: 31979637--31979676 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
31979627 GATTTAAGAT
*
31979637 TTAGGGGTTAAGGGTTAGGAG
1 TTAGGGGTTAAGAGTTAGGAG
31979658 TTAGGGGTTAAGAGTTAGG
1 TTAGGGGTTAAGAGTTAGG
31979677 GATTTAAGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.00, G:0.45, T:0.30
Consensus pattern (21 bp):
TTAGGGGTTAAGAGTTAGGAG
Found at i:31979675 original size:14 final size:14
Alignment explanation
Indices: 31979643--31979677 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
31979633 AGATTTAGGG
* *
31979643 GTTAAGGGTTAGGA
1 GTTAGGGGTTAAGA
31979657 GTTAGGGGTTAAGA
1 GTTAGGGGTTAAGA
31979671 GTTAGGG
1 GTTAGGG
31979678 ATTTAAGGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.26, C:0.00, G:0.46, T:0.29
Consensus pattern (14 bp):
GTTAGGGGTTAAGA
Found at i:31983696 original size:82 final size:82
Alignment explanation
Indices: 31983559--31983786 Score: 456
Period size: 82 Copynumber: 2.8 Consensus size: 82
31983549 ATTTATCTTT
31983559 CTAATTTCAAGTTTAAAATTGTACTAACTATTCTTTATGTTACTTCTAAGCATTCTTGTATTTCC
1 CTAATTTCAAGTTTAAAATTGTACTAACTATTCTTTATGTTACTTCTAAGCATTCTTGTATTTCC
31983624 CCCAGTTTAAAATTGTA
66 CCCAGTTTAAAATTGTA
31983641 CTAATTTCAAGTTTAAAATTGTACTAACTATTCTTTATGTTACTTCTAAGCATTCTTGTATTTCC
1 CTAATTTCAAGTTTAAAATTGTACTAACTATTCTTTATGTTACTTCTAAGCATTCTTGTATTTCC
31983706 CCCAGTTTAAAATTGTA
66 CCCAGTTTAAAATTGTA
31983723 CTAATTTCAAGTTTAAAATTGTACTAACTATTCTTTATGTTACTTCTAAGCATTCTTGTATTTC
1 CTAATTTCAAGTTTAAAATTGTACTAACTATTCTTTATGTTACTTCTAAGCATTCTTGTATTTC
31983787 ATCTAATTTG
Statistics
Matches: 146, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 146 1.00
ACGTcount: A:0.29, C:0.17, G:0.08, T:0.46
Consensus pattern (82 bp):
CTAATTTCAAGTTTAAAATTGTACTAACTATTCTTTATGTTACTTCTAAGCATTCTTGTATTTCC
CCCAGTTTAAAATTGTA
Found at i:31985029 original size:43 final size:44
Alignment explanation
Indices: 31984977--31985292 Score: 285
Period size: 43 Copynumber: 7.4 Consensus size: 44
31984967 TAGTGGCGAG
*
31984977 AAGCGCCGCTAAAGGTATCGAGCTATAGCGGCAGTTT-TAGGAA
1 AAGCGCCGCTAAAGGTATCGAGCTATAGCGGCAGTTTGTGGGAA
* *
31985020 AAGCGCCGCTAAAGGTATCGAGCTATAGCGAC-GTTTGTGGAAA
1 AAGCGCCGCTAAAGGTATCGAGCTATAGCGGCAGTTTGTGGGAA
* * *
31985063 AAGCCCCGCTAAAAGCTGT-GA-CTTATAGCGGC-GTTTGTGGGAA
1 AAGCGCCGCT-AAAGGTATCGAGC-TATAGCGGCAGTTTGTGGGAA
* **
31985106 AAGCGTCGCTAAAGGTATCGAGCTATAGCAACA-TTTGTGGGAA
1 AAGCGCCGCTAAAGGTATCGAGCTATAGCGGCAGTTTGTGGGAA
* * * * * **
31985149 AAACGTCGCTAAATGTCTTGAGCTATAATGGCA-TTTGTGGGAA
1 AAGCGCCGCTAAAGGTATCGAGCTATAGCGGCAGTTTGTGGGAA
* * *
31985192 AAGCGCCGCTAAAGGTCTCGAGATATAGCGGC-GTTTTTGGG-A
1 AAGCGCCGCTAAAGGTATCGAGCTATAGCGGCAGTTTGTGGGAA
* * * * ** *
31985234 AAGTGCCGCTAAAGGTTAACG-TCTTTAGCGGCA-TTTGTTAGAG
1 AAGCGCCGCTAAAGG-TATCGAGCTATAGCGGCAGTTTGTGGGAA
*
31985277 AAGCGCCGCTATAGGT
1 AAGCGCCGCTAAAGGT
31985293 CATGGTCTTT
Statistics
Matches: 221, Mismatches: 42, Indels: 21
0.78 0.15 0.07
Matches are distributed among these distances:
42 40 0.18
43 174 0.79
44 7 0.03
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (44 bp):
AAGCGCCGCTAAAGGTATCGAGCTATAGCGGCAGTTTGTGGGAA
Found at i:31985219 original size:129 final size:127
Alignment explanation
Indices: 31984977--31985249 Score: 316
Period size: 129 Copynumber: 2.1 Consensus size: 127
31984967 TAGTGGCGAG
** *
31984977 AAGCGCCGCTAAAGGTATCGAGCTATAGCGGCAGTTTTAGGAAAAGCGCCGCTAAAGGTATCGAG
1 AAGCGCCGCTAAAGGTATCGAGCTATAGCAACAGTTTTAGGAAAAACGCCGCTAAAGGTATCGAG
* * *
31985042 CTATAGCGACGTTTGTGGAAAAAGCCCCGCTAAAAGCTGTGACTTATAGCGGCGTTTGTGGGAA
66 CTATAACGACATTTGTGGAAAAAGCCCCGCTAAAAGCTGAGAC-TATAGCGGCGTTTGTGGG-A
* * * * * *
31985106 AAGCGTCGCTAAAGGTATCGAGCTATAGCAACA-TTTGTGGGAAAAACGTCGCTAAATGTCTTGA
1 AAGCGCCGCTAAAGGTATCGAGCTATAGCAACAGTTT-TAGGAAAAACGCCGCTAAAGGTATCGA
* * * * * *
31985170 GCTATAATGGCATTTGTGGGAAAAGCGCCGCTAAAGGTCTCGAGA-TATAGCGGCGTTTTTGGGA
65 GCTATAACGACATTTGTGGAAAAAGCCCCGCTAAAAG-CT-GAGACTATAGCGGCGTTTGTGGGA
*
31985234 AAGTGCCGCTAAAGGT
1 AAGCGCCGCTAAAGGT
31985250 TAACGTCTTT
Statistics
Matches: 121, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
128 18 0.15
129 98 0.81
130 2 0.02
131 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.23
Consensus pattern (127 bp):
AAGCGCCGCTAAAGGTATCGAGCTATAGCAACAGTTTTAGGAAAAACGCCGCTAAAGGTATCGAG
CTATAACGACATTTGTGGAAAAAGCCCCGCTAAAAGCTGAGACTATAGCGGCGTTTGTGGGA
Found at i:31985474 original size:22 final size:22
Alignment explanation
Indices: 31985449--31985491 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
31985439 TAGCGGCGCT
* *
31985449 AAAAAATGCCGCTAAAGGCCTA
1 AAAAAACGCCGCTAAAAGCCTA
*
31985471 AAAAAGCGCCGCTAAAAGCCT
1 AAAAAACGCCGCTAAAAGCCT
31985492 GTTTTGGTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.44, C:0.26, G:0.19, T:0.12
Consensus pattern (22 bp):
AAAAAACGCCGCTAAAAGCCTA
Found at i:31985781 original size:17 final size:17
Alignment explanation
Indices: 31985751--31985785 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
31985741 TATATTATGG
31985751 ATGATCTTAGATGTAAA
1 ATGATCTTAGATGTAAA
* *
31985768 ATGATGTTATATGTAAA
1 ATGATCTTAGATGTAAA
31985785 A
1 A
31985786 AAAGATTGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.17, T:0.37
Consensus pattern (17 bp):
ATGATCTTAGATGTAAA
Found at i:31986903 original size:12 final size:12
Alignment explanation
Indices: 31986886--31986913 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
31986876 TCAGGTAGTT
31986886 ACACGGCCTAGC
1 ACACGGCCTAGC
31986898 ACACGGCCTAGC
1 ACACGGCCTAGC
31986910 ACAC
1 ACAC
31986914 AGGCATGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.43, G:0.21, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:31989311 original size:30 final size:30
Alignment explanation
Indices: 31989275--31989341 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
31989265 TTCACATGGT
31989275 CGTGTGAGCTGACCATATGTGGAACACGAC
1 CGTGTGAGCTGACCATATGTGGAACACGAC
* *** * *
31989305 CGTGTGAGGTGATTGTGTGTGGCACACGAC
1 CGTGTGAGCTGACCATATGTGGAACACGAC
31989335 CGTGTGA
1 CGTGTGA
31989342 AAACCCATGT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.21, C:0.19, G:0.36, T:0.24
Consensus pattern (30 bp):
CGTGTGAGCTGACCATATGTGGAACACGAC
Found at i:32000809 original size:20 final size:19
Alignment explanation
Indices: 32000779--32000860 Score: 83
Period size: 20 Copynumber: 4.1 Consensus size: 19
32000769 GCATCATTGA
32000779 TGCATAATAGGGGCACTGAAG
1 TGCA-AATAGGGGCAC-GAAG
* *
32000800 TGCAAATAGGGGTACAAATG
1 TGCAAATAGGGGCACGAA-G
* *
32000820 TGCAAACAGGGGCACCGTAG
1 TGCAAATAGGGGCA-CGAAG
*
32000840 TGCAAATAGGGACACGAAG
1 TGCAAATAGGGGCACGAAG
32000859 TG
1 TG
32000861 TATACAAGGG
Statistics
Matches: 50, Mismatches: 9, Indels: 6
0.77 0.14 0.09
Matches are distributed among these distances:
19 8 0.16
20 36 0.72
21 6 0.12
ACGTcount: A:0.35, C:0.16, G:0.33, T:0.16
Consensus pattern (19 bp):
TGCAAATAGGGGCACGAAG
Found at i:32011971 original size:16 final size:16
Alignment explanation
Indices: 32011950--32011983 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
32011940 TTTACATGTT
32011950 AGAGGAAAACCTTGGA
1 AGAGGAAAACCTTGGA
32011966 AGAGGAAAACCTTGGA
1 AGAGGAAAACCTTGGA
32011982 AG
1 AG
32011984 GTTATTGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.12, G:0.32, T:0.12
Consensus pattern (16 bp):
AGAGGAAAACCTTGGA
Found at i:32017799 original size:19 final size:18
Alignment explanation
Indices: 32017771--32017810 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
32017761 AATCAAAACT
**
32017771 AAAATCAAATTCGAATTA
1 AAAATCAAATTAAAATTA
32017789 AAAACTCAAATTAAAATTA
1 AAAA-TCAAATTAAAATTA
32017808 AAA
1 AAA
32017811 CTAATGTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.62, C:0.10, G:0.03, T:0.25
Consensus pattern (18 bp):
AAAATCAAATTAAAATTA
Found at i:32028111 original size:31 final size:30
Alignment explanation
Indices: 32028070--32028137 Score: 75
Period size: 31 Copynumber: 2.2 Consensus size: 30
32028060 TGTTAATGGA
*
32028070 TGACTAATTTGTCACTTTTCGAAAATGTT-AG
1 TGACTGATTTGTCACTTTTCG-AAA-GTTGAG
* * *
32028101 TGACTGATTTGTTATTTTTTGAAAGTTGAG
1 TGACTGATTTGTCACTTTTCGAAAGTTGAG
32028131 TGACTGA
1 TGACTGA
32028138 ATTGAAACTT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
29 3 0.09
30 12 0.38
31 17 0.53
ACGTcount: A:0.26, C:0.09, G:0.21, T:0.44
Consensus pattern (30 bp):
TGACTGATTTGTCACTTTTCGAAAGTTGAG
Found at i:32029338 original size:71 final size:71
Alignment explanation
Indices: 32029255--32029492 Score: 467
Period size: 71 Copynumber: 3.4 Consensus size: 71
32029245 AATAAAAATC
32029255 TTTTAATAAAATTAAAATTCTTATTGATAAGTGTAATGATCTTTTATGAAGTAAATTTATTTAAC
1 TTTTAATAAAATTAAAATTCTTATTGATAAGTGTAATGATCTTTTATGAAGTAAATTTATTTAAC
32029320 CAATTA
66 CAATTA
32029326 TTTTAATAAAATTAAAATTCTTATTGATAAGTGTAATGATCTTTTATGAAGTAAATTTATTTAAC
1 TTTTAATAAAATTAAAATTCTTATTGATAAGTGTAATGATCTTTTATGAAGTAAATTTATTTAAC
32029391 CAATTA
66 CAATTA
32029397 TTTTAATAAAATTAAAATTCTTATTGATAAGTGTAATGATCTTTTATGAAGTAAATTTATTTAAC
1 TTTTAATAAAATTAAAATTCTTATTGATAAGTGTAATGATCTTTTATGAAGTAAATTTATTTAAC
32029462 CAATTA
66 CAATTA
*
32029468 TTTTAATAAAATTAAAATTGTTATT
1 TTTTAATAAAATTAAAATTCTTATT
32029493 TTATAAATGT
Statistics
Matches: 166, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
71 166 1.00
ACGTcount: A:0.41, C:0.05, G:0.08, T:0.46
Consensus pattern (71 bp):
TTTTAATAAAATTAAAATTCTTATTGATAAGTGTAATGATCTTTTATGAAGTAAATTTATTTAAC
CAATTA
Found at i:32030653 original size:2 final size:2
Alignment explanation
Indices: 32030646--32030673 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
32030636 TCTAAATTTA
32030646 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
32030674 TAGTCACGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:32035696 original size:18 final size:20
Alignment explanation
Indices: 32035657--32035696 Score: 57
Period size: 18 Copynumber: 2.1 Consensus size: 20
32035647 CACCCCTCCT
*
32035657 TTTTTATTTTACTTTTATTA
1 TTTTTATTTTACTTTCATTA
32035677 TTTTTA-TTTA-TTTCATTA
1 TTTTTATTTTACTTTCATTA
32035695 TT
1 TT
32035697 ATTTTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 9 0.47
19 4 0.21
20 6 0.32
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (20 bp):
TTTTTATTTTACTTTCATTA
Found at i:32035697 original size:3 final size:3
Alignment explanation
Indices: 32035671--32035745 Score: 57
Period size: 3 Copynumber: 25.0 Consensus size: 3
32035661 TATTTTACTT
* *
32035671 TTA TTA TTT TTA TTTA TT- TCA TTA TTA TT- TTAA TTA TTA TTA -TA
1 TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA TTA
* * *
32035715 TTA GTA GTTA TTA TTA TTC CTA TTA TTA TTA
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA
32035746 ATACTATTAC
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
2 5 0.09
3 44 0.79
4 7 0.12
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:32035698 original size:15 final size:14
Alignment explanation
Indices: 32035660--32035745 Score: 50
Period size: 15 Copynumber: 5.6 Consensus size: 14
32035650 CCCTCCTTTT
*
32035660 TTATT-TTACTTTTA
1 TTATTATTA-TTTAA
* *
32035674 TTATTTTTATTTAT
1 TTATTATTATTTAA
32035688 TTCATTATTATTTTAA
1 TT-ATTATTA-TTTAA
32035704 TTATTATTATATTAGTA
1 TTATTATTAT-TTA--A
32035721 GTTATTATTATTCCT-A
1 -TTATTATTATT--TAA
32035737 TTATTATTA
1 TTATTATTA
32035746 ATACTATTAC
Statistics
Matches: 59, Mismatches: 4, Indels: 17
0.74 0.05 0.21
Matches are distributed among these distances:
14 11 0.19
15 28 0.47
16 7 0.12
17 2 0.03
18 10 0.17
19 1 0.02
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (14 bp):
TTATTATTATTTAA
Found at i:32035712 original size:18 final size:18
Alignment explanation
Indices: 32035660--32035732 Score: 55
Period size: 18 Copynumber: 4.1 Consensus size: 18
32035650 CCCTCCTTTT
*
32035660 TTATTTTACTT-TTATTA
1 TTATTTTAATTATTATTA
*
32035677 -T-TTTTATTTATTTCATTA
1 TTATTTTAATTA-TT-ATTA
32035695 TTATTTTAATTATTATTA
1 TTATTTTAATTATTATTA
* *
32035713 -TATTAGTAGTTATTATTA
1 TTATT-TTAATTATTATTA
32035731 TT
1 TT
32035733 CCTATTATTA
Statistics
Matches: 45, Mismatches: 4, Indels: 12
0.74 0.07 0.20
Matches are distributed among these distances:
15 7 0.16
16 1 0.02
17 6 0.13
18 19 0.42
19 4 0.09
20 8 0.18
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.67
Consensus pattern (18 bp):
TTATTTTAATTATTATTA
Found at i:32035752 original size:15 final size:15
Alignment explanation
Indices: 32035693--32035754 Score: 51
Period size: 15 Copynumber: 4.3 Consensus size: 15
32035683 TTTATTTCAT
32035693 TATTATT-TTAAT--
1 TATTATTATTAATAC
* *
32035705 TATTATTA-TATTAG
1 TATTATTATTAATAC
* *
32035719 TAGTTATTATTATTCC
1 TA-TTATTATTAATAC
32035735 TATTATTATTAATAC
1 TATTATTATTAATAC
32035750 TATTA
1 TATTA
32035755 CTACTACTAC
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
12 10 0.25
14 2 0.05
15 22 0.55
16 6 0.15
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (15 bp):
TATTATTATTAATAC
Found at i:32043026 original size:26 final size:26
Alignment explanation
Indices: 32042966--32043036 Score: 99
Period size: 26 Copynumber: 2.7 Consensus size: 26
32042956 CTTTGACATC
32042966 GTTGCTCACACGAGCTGTGAAATGTG
1 GTTGCTCACACGAGCTGTGAAATGTG
* * *
32042992 GATGTTCACATGAGCTGTGAAATG-G
1 GTTGCTCACACGAGCTGTGAAATGTG
32043017 GTTTGCTCACACGAGCTGTG
1 G-TTGCTCACACGAGCTGTG
32043037 GAGTATCCGC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 2 0.05
26 36 0.95
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (26 bp):
GTTGCTCACACGAGCTGTGAAATGTG
Found at i:32052434 original size:23 final size:26
Alignment explanation
Indices: 32052390--32052436 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
32052380 TTATTATTGG
*
32052390 TTATTTTTTTCTAGTTTGTTATCTCT
1 TTATTTTATTCTAGTTTGTTATCTCT
32052416 TTATTTTATT-TA-TTT-TTATCT
1 TTATTTTATTCTAGTTTGTTATCT
32052437 ATTGTCTTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 6 0.30
24 3 0.15
25 2 0.10
26 9 0.45
ACGTcount: A:0.15, C:0.09, G:0.04, T:0.72
Consensus pattern (26 bp):
TTATTTTATTCTAGTTTGTTATCTCT
Found at i:32064865 original size:15 final size:14
Alignment explanation
Indices: 32064847--32064883 Score: 51
Period size: 12 Copynumber: 2.7 Consensus size: 14
32064837 CACACTACCG
32064847 TGTGTCACATGGCCA
1 TGTGT-ACATGGCCA
32064862 TGTGT-CA-GGCCA
1 TGTGTACATGGCCA
32064874 TGTGTACATG
1 TGTGTACATG
32064884 AAATTTGTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
12 10 0.50
13 4 0.20
14 1 0.05
15 5 0.25
ACGTcount: A:0.19, C:0.22, G:0.30, T:0.30
Consensus pattern (14 bp):
TGTGTACATGGCCA
Found at i:32066311 original size:17 final size:17
Alignment explanation
Indices: 32066289--32066321 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
32066279 CAATTCAGTC
32066289 CAAAATT-CATATTTTTA
1 CAAAATTACA-ATTTTTA
32066306 CAAAATTACAATTTTT
1 CAAAATTACAATTTTT
32066322 CCCCTAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.87
18 2 0.13
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (17 bp):
CAAAATTACAATTTTTA
Found at i:32073648 original size:27 final size:27
Alignment explanation
Indices: 32073615--32073740 Score: 155
Period size: 27 Copynumber: 4.7 Consensus size: 27
32073605 TACCCTCGAT
32073615 GGGTAAAATGACCGTAATGCCCCTGTA
1 GGGTAAAATGACCGTAATGCCCCTGTA
* ** * *
32073642 GGATAAAATGACTTTAATGTCCTTGTA
1 GGGTAAAATGACCGTAATGCCCCTGTA
* *
32073669 GGGTAAAATGATCGTAATGCCCCTATA
1 GGGTAAAATGACCGTAATGCCCCTGTA
32073696 GGGTAAAATGACCGTAATAG-CCCTGTA
1 GGGTAAAATGACCGTAAT-GCCCCTGTA
* *
32073723 GGGTAAAATAACTGTAAT
1 GGGTAAAATGACCGTAAT
32073741 TCCCTGGTGG
Statistics
Matches: 82, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
27 81 0.99
28 1 0.01
ACGTcount: A:0.34, C:0.16, G:0.23, T:0.27
Consensus pattern (27 bp):
GGGTAAAATGACCGTAATGCCCCTGTA
Found at i:32073839 original size:24 final size:24
Alignment explanation
Indices: 32073804--32073862 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
32073794 CCTGTGGTTA
*
32073804 AATGACTAATTTGTCTGTG-TTTGG
1 AATGACTGATTTGTCTGTGATTT-G
* *
32073828 TATGACTGATTTGTGTGTGATTTG
1 AATGACTGATTTGTCTGTGATTTG
32073852 AATGACTGATT
1 AATGACTGATT
32073863 CTGAGCATTG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 27 0.90
25 3 0.10
ACGTcount: A:0.22, C:0.07, G:0.25, T:0.46
Consensus pattern (24 bp):
AATGACTGATTTGTCTGTGATTTG
Found at i:32073987 original size:27 final size:26
Alignment explanation
Indices: 32073957--32074025 Score: 84
Period size: 26 Copynumber: 2.6 Consensus size: 26
32073947 ACAATCATTG
**
32073957 TTACTGGTGGCTTTGCCACATATACTA
1 TTACTGGCAGCTTTGCCACA-ATACTA
**
32073984 TTACTGGCAGCTTTGCTGCAATACTA
1 TTACTGGCAGCTTTGCCACAATACTA
*
32074010 TTGCTGGCAGCTTTGC
1 TTACTGGCAGCTTTGC
32074026 TGCGATGCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 21 0.57
27 16 0.43
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (26 bp):
TTACTGGCAGCTTTGCCACAATACTA
Found at i:32074016 original size:26 final size:26
Alignment explanation
Indices: 32073978--32074028 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
32073968 TTTGCCACAT
32073978 ATACTATTACTGGCAGCTTTGCTGCA
1 ATACTATTACTGGCAGCTTTGCTGCA
*
32074004 ATACTATTGCTGGCAGCTTTGCTGC
1 ATACTATTACTGGCAGCTTTGCTGC
32074029 GATGCTACCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.35
Consensus pattern (26 bp):
ATACTATTACTGGCAGCTTTGCTGCA
Found at i:32074090 original size:32 final size:32
Alignment explanation
Indices: 32074054--32074218 Score: 113
Period size: 32 Copynumber: 5.2 Consensus size: 32
32074044 TTTGTGTCAG
*
32074054 TCATAGTACCGTTACTGATGGCTTTGTGCCGA
1 TCATAGTACCGTTACTAATGGCTTTGTGCCGA
* * * *
32074086 TCATATTACCATTACCAATGGCTGTGTGCCGA
1 TCATAGTACCGTTACTAATGGCTTTGTGCCGA
* ** **
32074118 TCAT-TTCACTATTACTAATGG-TTGTGTATCGA
1 TCATAGT-ACCGTTACTAATGGCTT-TGTGCCGA
** * * * *
32074150 TCATACCACTGCTACTGATGGCTTTGTGCCAA
1 TCATAGTACCGTTACTAATGGCTTTGTGCCGA
*
32074182 TCAT-GTTACCGTTACTAATGG-TTGTGTGCCGG
1 TCATAG-TACCGTTACTAATGGCTT-TGTGCCGA
32074214 TCATA
1 TCATA
32074219 TCACTGCTAC
Statistics
Matches: 101, Mismatches: 25, Indels: 13
0.73 0.18 0.09
Matches are distributed among these distances:
31 5 0.05
32 94 0.93
33 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (32 bp):
TCATAGTACCGTTACTAATGGCTTTGTGCCGA
Found at i:32074171 original size:64 final size:64
Alignment explanation
Indices: 32074103--32074248 Score: 195
Period size: 64 Copynumber: 2.3 Consensus size: 64
32074093 ACCATTACCA
* * * *
32074103 ATGGCTGTGTGCCGATCAT-TTCACTATTACTAATGGTTGTGTATCGATCATACCACTGCTACTG
1 ATGGCTTTGTGCCAATCATGTT-ACCATTACTAATGGTTGTGTACCGATCATACCACTGCTACTG
* * * *
32074167 ATGGCTTTGTGCCAATCATGTTACCGTTACTAATGGTTGTGTGCCGGTCATATCACTGCTACTG
1 ATGGCTTTGTGCCAATCATGTTACCATTACTAATGGTTGTGTACCGATCATACCACTGCTACTG
*
32074231 TTGGCTTTGTGCCAATCA
1 ATGGCTTTGTGCCAATCA
32074249 CATTACTGTA
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
64 70 0.97
65 2 0.03
ACGTcount: A:0.20, C:0.22, G:0.22, T:0.36
Consensus pattern (64 bp):
ATGGCTTTGTGCCAATCATGTTACCATTACTAATGGTTGTGTACCGATCATACCACTGCTACTG
Found at i:32074242 original size:32 final size:32
Alignment explanation
Indices: 32074031--32074248 Score: 109
Period size: 32 Copynumber: 6.8 Consensus size: 32
32074021 TTTGCTGCGA
* * * *
32074031 TGCTACCGATGGATTTGTGTCAGTCATAGT-AC
1 TGCTACTGATGGCTTTGTGCCAATCATA-TCAC
* * * *
32074063 CGTTACTGATGGCTTTGTGCCGATCATATTAC
1 TGCTACTGATGGCTTTGTGCCAATCATATCAC
*** ** * * *
32074095 CATTACCAATGGCTGTGTGCCGATCATTTCAC
1 TGCTACTGATGGCTTTGTGCCAATCATATCAC
** * ** * *
32074127 TATTACTAATGG-TTGTGTATCGATCATACCAC
1 TGCTACTGATGGCTT-TGTGCCAATCATATCAC
* *
32074159 TGCTACTGATGGCTTTGTGCCAATCATGTTAC
1 TGCTACTGATGGCTTTGTGCCAATCATATCAC
* * * **
32074191 CGTTACTAATGG-TTGTGTGCCGGTCATATCAC
1 TGCTACTGATGGCTT-TGTGCCAATCATATCAC
*
32074223 TGCTACTGTTGGCTTTGTGCCAATCA
1 TGCTACTGATGGCTTTGTGCCAATCA
32074249 CATTACTGTA
Statistics
Matches: 139, Mismatches: 42, Indels: 10
0.73 0.22 0.05
Matches are distributed among these distances:
31 4 0.03
32 131 0.94
33 4 0.03
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.36
Consensus pattern (32 bp):
TGCTACTGATGGCTTTGTGCCAATCATATCAC
Found at i:32074304 original size:22 final size:22
Alignment explanation
Indices: 32074260--32074306 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
32074250 ATTACTGTAC
* **
32074260 TTATAGCTTGTAGCCATTTTGT
1 TTATAGCTTATAGCCATCCTGT
*
32074282 TTATAGCTTATAGCTATCCTGT
1 TTATAGCTTATAGCCATCCTGT
32074304 TTA
1 TTA
32074307 CGGCTCTTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.21, C:0.15, G:0.15, T:0.49
Consensus pattern (22 bp):
TTATAGCTTATAGCCATCCTGT
Found at i:32074347 original size:26 final size:26
Alignment explanation
Indices: 32074318--32074368 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
32074308 GGCTCTTAGC
* *
32074318 CATTCTGACTACTGGCAGCTCTGCTG
1 CATTATGACTACTGGCAGCTATGCTG
*
32074344 CATTATTACTACTGGCAGCTATGCT
1 CATTATGACTACTGGCAGCTATGCT
32074369 ATGATATTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.20, C:0.27, G:0.20, T:0.33
Consensus pattern (26 bp):
CATTATGACTACTGGCAGCTATGCTG
Found at i:32080144 original size:106 final size:105
Alignment explanation
Indices: 32079959--32080165 Score: 405
Period size: 106 Copynumber: 2.0 Consensus size: 105
32079949 ATTGCTGCAA
32079959 TTTAGTCAGGTAAGTTTGTATGAACTATAATCACTTAAATGTTGATTAAATTAAATGTTTAATGT
1 TTTAGTCAGGTAAGTTTGTATGAACTATAATCACTTAAATGTTGATTAAATTAAATGTTTAATGT
32080024 GTTGTTTTAATGTAAATGAATCAATATATATAATATGTTGT
66 GTTGTTTTAATGTAAATGAATCAATATATAT-ATATGTTGT
32080065 TTTAGTCAGGTAAGTTTGTATGAACTATAATCACTTAAATGTTGATTAAATTAAATGTTTAATGT
1 TTTAGTCAGGTAAGTTTGTATGAACTATAATCACTTAAATGTTGATTAAATTAAATGTTTAATGT
32080130 GTTGTTTTAATGTAAATGAATCAATATATATATATG
66 GTTGTTTTAATGTAAATGAATCAATATATATATATG
32080166 ATTATGTCTA
Statistics
Matches: 101, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
105 5 0.05
106 96 0.95
ACGTcount: A:0.36, C:0.05, G:0.15, T:0.44
Consensus pattern (105 bp):
TTTAGTCAGGTAAGTTTGTATGAACTATAATCACTTAAATGTTGATTAAATTAAATGTTTAATGT
GTTGTTTTAATGTAAATGAATCAATATATATATATGTTGT
Found at i:32080472 original size:20 final size:20
Alignment explanation
Indices: 32080447--32080493 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
32080437 GTATGAAAAG
*
32080447 AAAGGAATGGTAAGTGTACA
1 AAAGGAATGATAAGTGTACA
*
32080467 AAAGGAATTATAAGTGTACA
1 AAAGGAATGATAAGTGTACA
32080487 AAAGGAA
1 AAAGGAA
32080494 CTATGTCATG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.51, C:0.04, G:0.26, T:0.19
Consensus pattern (20 bp):
AAAGGAATGATAAGTGTACA
Found at i:32081145 original size:24 final size:24
Alignment explanation
Indices: 32081118--32081168 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
32081108 AAGTTTATGC
32081118 TAAGCAAATG-GAATGGAAAGTAAG
1 TAAGCAAATGAG-ATGGAAAGTAAG
* *
32081142 TAAGTAAATGAGGTGGAAAGTAAG
1 TAAGCAAATGAGATGGAAAGTAAG
32081166 TAA
1 TAA
32081169 ATGGAATGGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.49, C:0.02, G:0.29, T:0.20
Consensus pattern (24 bp):
TAAGCAAATGAGATGGAAAGTAAG
Found at i:32088656 original size:8 final size:8
Alignment explanation
Indices: 32088643--32088670 Score: 56
Period size: 8 Copynumber: 3.5 Consensus size: 8
32088633 TATACTAAAC
32088643 AATAAAAT
1 AATAAAAT
32088651 AATAAAAT
1 AATAAAAT
32088659 AATAAAAT
1 AATAAAAT
32088667 AATA
1 AATA
32088671 TTTAAAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (8 bp):
AATAAAAT
Found at i:32107873 original size:1 final size:1
Alignment explanation
Indices: 32107867--32107927 Score: 122
Period size: 1 Copynumber: 61.0 Consensus size: 1
32107857 TCATGGTGTG
32107867 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
32107928 GTGGGCCTAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:32111012 original size:27 final size:27
Alignment explanation
Indices: 32110981--32111048 Score: 136
Period size: 27 Copynumber: 2.5 Consensus size: 27
32110971 TTTTGAAGTC
32110981 AAGTTTTGAAGTTTAGGCTTCAAATTT
1 AAGTTTTGAAGTTTAGGCTTCAAATTT
32111008 AAGTTTTGAAGTTTAGGCTTCAAATTT
1 AAGTTTTGAAGTTTAGGCTTCAAATTT
32111035 AAGTTTTGAAGTTT
1 AAGTTTTGAAGTTT
32111049 GAATTTAGGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.29, C:0.06, G:0.19, T:0.46
Consensus pattern (27 bp):
AAGTTTTGAAGTTTAGGCTTCAAATTT
Found at i:32111404 original size:17 final size:17
Alignment explanation
Indices: 32111362--32111405 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
32111352 NNNAAATATT
*
32111362 AAATAAAAAAGTTTATAA
1 AAATAAAAAAATTTAT-A
*
32111380 AAATAAAATAATTT-TA
1 AAATAAAAAAATTTATA
32111396 AAATAAAAAA
1 AAATAAAAAA
32111406 TATGAATATA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 10 0.43
17 1 0.04
18 12 0.52
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.27
Consensus pattern (17 bp):
AAATAAAAAAATTTATA
Found at i:32119467 original size:16 final size:16
Alignment explanation
Indices: 32119446--32119477 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32119436 TATTTATTTA
*
32119446 CAAAAATTATCTAAGT
1 CAAAAATTATATAAGT
32119462 CAAAAATTATATAAGT
1 CAAAAATTATATAAGT
32119478 AAATGATGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.09, G:0.06, T:0.31
Consensus pattern (16 bp):
CAAAAATTATATAAGT
Found at i:32120170 original size:47 final size:47
Alignment explanation
Indices: 32120101--32120191 Score: 139
Period size: 47 Copynumber: 1.9 Consensus size: 47
32120091 TACATATCTC
*
32120101 TATTTTTCATATATGTTATTCTCTTTCCTTTCTC-ATATTTGATTCTT
1 TATTTTCCATATATGTTATTCTCTTTCCTTTC-CAATATTTGATTCTT
**
32120148 TATTTTCCATATATGTTATTCTCTTTGTTTTCCAATATTTGATT
1 TATTTTCCATATATGTTATTCTCTTTCCTTTCCAATATTTGATT
32120192 TTCCATTTCC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
46 1 0.03
47 39 0.98
ACGTcount: A:0.19, C:0.15, G:0.05, T:0.60
Consensus pattern (47 bp):
TATTTTCCATATATGTTATTCTCTTTCCTTTCCAATATTTGATTCTT
Found at i:32120258 original size:46 final size:47
Alignment explanation
Indices: 32120206--32120299 Score: 120
Period size: 46 Copynumber: 2.0 Consensus size: 47
32120196 ATTTCCTATT
* * *
32120206 TCTATTT-TGCATATTTGTTATTCTCTTT-TCTTCCCATATTTGATTC
1 TCTATTTCT-CATATATGTTAGTATCTTTCTCTTCCCATATTTGATTC
* *
32120252 TCTATTTCTCATATATGTTAGTATCTTTCTTTTCTCATATTTGATTC
1 TCTATTTCTCATATATGTTAGTATCTTTCTCTTCCCATATTTGATTC
32120299 T
1 T
32120300 TGTTTTCCAT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
46 23 0.56
47 18 0.44
ACGTcount: A:0.17, C:0.18, G:0.06, T:0.59
Consensus pattern (47 bp):
TCTATTTCTCATATATGTTAGTATCTTTCTCTTCCCATATTTGATTC
Found at i:32120307 original size:106 final size:107
Alignment explanation
Indices: 32120099--32120297 Score: 287
Period size: 106 Copynumber: 1.9 Consensus size: 107
32120089 AATACATATC
* * *
32120099 TCTATTTTTCATATATGTTATTCTCTTTCCTTTCTCATATTTGATTCTTTATTTTCCATATATGT
1 TCTATTTTGCATATATGTTATTCTCTTTCCTTTCCCATATTTGATTCTCTATTTTCCATATATGT
* * *
32120164 TATTCTCTTTGTTTTCCAATATTTGATTTTCCATTTCCTATT
66 TAGTATCTTTCTTTTCCAATATTTGATTTTCCATTTCCTATT
* *
32120206 TCTATTTTGCATATTTGTTATTCTCTTTTC-TTCCCATATTTGATTCTCTA-TTTCTCATATATG
1 TCTATTTTGCATATATGTTATTCTCTTTCCTTTCCCATATTTGATTCTCTATTTTC-CATATATG
32120269 TTAGTATCTTTCTTTTCTC-ATATTTGATT
65 TTAGTATCTTTCTTTTC-CAATATTTGATT
32120298 CTTGTTTTCC
Statistics
Matches: 82, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
105 4 0.05
106 50 0.61
107 28 0.34
ACGTcount: A:0.18, C:0.18, G:0.06, T:0.59
Consensus pattern (107 bp):
TCTATTTTGCATATATGTTATTCTCTTTCCTTTCCCATATTTGATTCTCTATTTTCCATATATGT
TAGTATCTTTCTTTTCCAATATTTGATTTTCCATTTCCTATT
Found at i:32120437 original size:19 final size:19
Alignment explanation
Indices: 32120390--32120439 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
32120380 CCCATATTTG
* *
32120390 TCTTTCTCTCTCTCATCCC
1 TCTTTCTTTCTCTCATACC
* * *
32120409 TCTATATTTCTCTCATATC
1 TCTTTCTTTCTCTCATACC
32120428 TCTTTCTTTCTC
1 TCTTTCTTTCTC
32120440 ACTCTCATCT
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.10, C:0.36, G:0.00, T:0.54
Consensus pattern (19 bp):
TCTTTCTTTCTCTCATACC
Found at i:32132295 original size:23 final size:23
Alignment explanation
Indices: 32132255--32132511 Score: 291
Period size: 23 Copynumber: 11.0 Consensus size: 23
32132245 TCTACCCTGT
*
32132255 TTGGACAGC-TCTTATACATCAAA
1 TTGGACAGCAT-TTATACACCAAA
* *
32132278 TTGGATAGCATTTTTACACCAAAA
1 TTGGACAGCATTTATACACC-AAA
32132302 TTGGACAGCATTTATACACCAAA
1 TTGGACAGCATTTATACACCAAA
* * *
32132325 TTGGGCAGCATATATATACCAAA
1 TTGGACAGCATTTATACACCAAA
* *
32132348 TTGGACAACATTTTTTACACCAAAA
1 TTGGACAGCA-TTTATACACC-AAA
* *
32132373 CTAGACAGCATTTATACACCAAA
1 TTGGACAGCATTTATACACCAAA
* * * *
32132396 TTGGGCAGTATATATATACCAAA
1 TTGGACAGCATTTATACACCAAA
*
32132419 TTGGACAGCATTTTTACACCAAAA
1 TTGGACAGCATTTATACACC-AAA
32132443 TTGGACAGCATTTATACACCAAA
1 TTGGACAGCATTTATACACCAAA
* * *
32132466 TTGGGCAGCATATATATACCAAA
1 TTGGACAGCATTTATACACCAAA
*
32132489 TTGGACAGCATTTTTACACCAAA
1 TTGGACAGCATTTATACACCAAA
32132512 ATTCACTTGA
Statistics
Matches: 193, Mismatches: 36, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
23 123 0.64
24 60 0.31
25 10 0.05
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (23 bp):
TTGGACAGCATTTATACACCAAA
Found at i:32132472 original size:70 final size:70
Alignment explanation
Indices: 32132274--32132514 Score: 428
Period size: 70 Copynumber: 3.4 Consensus size: 70
32132264 TCTTATACAT
*
32132274 CAAATTGGATAGCATTTTTACACCAAAATTGGACAGCATTTATACACCAAATTGGGCAGCATATA
1 CAAATTGGACAGCATTTTTACACCAAAATTGGACAGCATTTATACACCAAATTGGGCAGCATATA
32132339 TATAC
66 TATAC
* * * *
32132344 CAAATTGGACAACATTTTTTACACCAAAACTAGACAGCATTTATACACCAAATTGGGCAGTATAT
1 CAAATTGGACAGCA-TTTTTACACCAAAATTGGACAGCATTTATACACCAAATTGGGCAGCATAT
32132409 ATATAC
65 ATATAC
32132415 CAAATTGGACAGCATTTTTACACCAAAATTGGACAGCATTTATACACCAAATTGGGCAGCATATA
1 CAAATTGGACAGCATTTTTACACCAAAATTGGACAGCATTTATACACCAAATTGGGCAGCATATA
32132480 TATAC
66 TATAC
32132485 CAAATTGGACAGCATTTTTACACCAAAATT
1 CAAATTGGACAGCATTTTTACACCAAAATT
32132515 CACTTGAATC
Statistics
Matches: 161, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
70 95 0.59
71 66 0.41
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (70 bp):
CAAATTGGACAGCATTTTTACACCAAAATTGGACAGCATTTATACACCAAATTGGGCAGCATATA
TATAC
Found at i:32135697 original size:15 final size:15
Alignment explanation
Indices: 32135677--32135709 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
32135667 CGATATATGT
32135677 AAGACTTAGAAAACA
1 AAGACTTAGAAAACA
32135692 AAGACTTAGAAAACA
1 AAGACTTAGAAAACA
32135707 AAG
1 AAG
32135710 TTAAGAGTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.61, C:0.12, G:0.15, T:0.12
Consensus pattern (15 bp):
AAGACTTAGAAAACA
Found at i:32136718 original size:13 final size:12
Alignment explanation
Indices: 32136696--32136748 Score: 56
Period size: 12 Copynumber: 4.5 Consensus size: 12
32136686 ATAATGAATG
32136696 GTTTTTATTCAA
1 GTTTTTATTCAA
32136708 GTTTTTCATTC-A
1 GTTTTT-ATTCAA
*
32136720 GTTTTTATTCAT
1 GTTTTTATTCAA
* *
32136732 CTTTCTATT-AA
1 GTTTTTATTCAA
32136743 GTTTTT
1 GTTTTT
32136749 CTTTAGTTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
11 9 0.27
12 20 0.61
13 4 0.12
ACGTcount: A:0.19, C:0.11, G:0.08, T:0.62
Consensus pattern (12 bp):
GTTTTTATTCAA
Found at i:32136745 original size:23 final size:24
Alignment explanation
Indices: 32136696--32136748 Score: 65
Period size: 23 Copynumber: 2.2 Consensus size: 24
32136686 ATAATGAATG
* *
32136696 GTTTTTATTCAAGTTTTTCATTCA
1 GTTTTTATTCAAGTCTTTCATTAA
32136720 GTTTTTATTC-A-TCTTTCTATTAA
1 GTTTTTATTCAAGTCTTTC-ATTAA
32136743 GTTTTT
1 GTTTTT
32136749 CTTTAGTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 5 0.19
23 11 0.42
24 10 0.38
ACGTcount: A:0.19, C:0.11, G:0.08, T:0.62
Consensus pattern (24 bp):
GTTTTTATTCAAGTCTTTCATTAA
Found at i:32136826 original size:47 final size:47
Alignment explanation
Indices: 32136772--32136911 Score: 280
Period size: 47 Copynumber: 3.0 Consensus size: 47
32136762 TTTCTTTTAT
32136772 TTCGTTCTTTGTGGGGATCATATTGTAGATCGCCATACTCTTCAACA
1 TTCGTTCTTTGTGGGGATCATATTGTAGATCGCCATACTCTTCAACA
32136819 TTCGTTCTTTGTGGGGATCATATTGTAGATCGCCATACTCTTCAACA
1 TTCGTTCTTTGTGGGGATCATATTGTAGATCGCCATACTCTTCAACA
32136866 TTCGTTCTTTGTGGGGATCATATTGTAGATCGCCATACTCTTCAAC
1 TTCGTTCTTTGTGGGGATCATATTGTAGATCGCCATACTCTTCAAC
32136912 GGATTATTAT
Statistics
Matches: 93, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 93 1.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (47 bp):
TTCGTTCTTTGTGGGGATCATATTGTAGATCGCCATACTCTTCAACA
Found at i:32145491 original size:27 final size:26
Alignment explanation
Indices: 32145432--32145505 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 26
32145422 AGTTTGACAG
*
32145432 GACGTTAAACACGGGTTGGTCCCATAA
1 GACGTTAAACACGGG-TAGTCCCATAA
* **
32145459 GACGTTAAACACGGGATAGTCCGATGG
1 GACGTTAAACACGGG-TAGTCCCATAA
*
32145486 GCCGTTAAACACAGGGTAGT
1 GACGTTAAACAC-GGGTAGT
32145506 TCGTCAGAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
27 37 0.93
28 3 0.08
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (26 bp):
GACGTTAAACACGGGTAGTCCCATAA
Found at i:32151370 original size:24 final size:23
Alignment explanation
Indices: 32151334--32151379 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
32151324 CTCTTACTTC
32151334 AACTGCCCCAAAAAGGAATTGTT
1 AACTGCCCCAAAAAGGAATTGTT
32151357 AACTGCCCCAAAAAGGAATTGTT
1 AACTGCCCCAAAAAGGAATTGTT
32151380 CTTTAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.22
Consensus pattern (23 bp):
AACTGCCCCAAAAAGGAATTGTT
Found at i:32162071 original size:20 final size:20
Alignment explanation
Indices: 32162042--32162086 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
32162032 AAAAGAAACC
32162042 TCTA-CAACTCTACAAGGGT
1 TCTACCAACTCTACAAGGGT
32162061 TCTACCAACTCTACAAGGGT
1 TCTACCAACTCTACAAGGGT
32162081 TCTACC
1 TCTACC
32162087 TTTTCTTCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.16
20 21 0.84
ACGTcount: A:0.29, C:0.31, G:0.13, T:0.27
Consensus pattern (20 bp):
TCTACCAACTCTACAAGGGT
Found at i:32162727 original size:23 final size:23
Alignment explanation
Indices: 32162686--32162729 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
32162676 TATTTTTAAA
*
32162686 GTTTGTTTATGGTTTGGGTTTGG
1 GTTTGTTTAAGGTTTGGGTTTGG
32162709 GTTT-TTTAAGGTTTAGGGTTT
1 GTTTGTTTAAGGTTT-GGGTTT
32162730 TTAAGATAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.09, C:0.00, G:0.34, T:0.57
Consensus pattern (23 bp):
GTTTGTTTAAGGTTTGGGTTTGG
Found at i:32191855 original size:11 final size:12
Alignment explanation
Indices: 32191834--32191858 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
32191824 AGTTAGCCTC
32191834 TTTCTTTTTTTT
1 TTTCTTTTTTTT
32191846 TTTCTTTTTTTT
1 TTTCTTTTTTTT
32191858 T
1 T
32191859 ACAGCAGCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (12 bp):
TTTCTTTTTTTT
Found at i:32192244 original size:17 final size:17
Alignment explanation
Indices: 32192222--32192262 Score: 82
Period size: 17 Copynumber: 2.4 Consensus size: 17
32192212 GTTTGTTTTT
32192222 AGTGAGTATGTTCAATA
1 AGTGAGTATGTTCAATA
32192239 AGTGAGTATGTTCAATA
1 AGTGAGTATGTTCAATA
32192256 AGTGAGT
1 AGTGAGT
32192263 TGGTGTCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.34, C:0.05, G:0.27, T:0.34
Consensus pattern (17 bp):
AGTGAGTATGTTCAATA
Found at i:32202705 original size:8 final size:8
Alignment explanation
Indices: 32202692--32202743 Score: 51
Period size: 8 Copynumber: 7.0 Consensus size: 8
32202682 TTTTTAAAAA
32202692 TAATTTAT
1 TAATTTAT
32202700 TAA-TT-T
1 TAATTTAT
*
32202706 T-AGTTAT
1 TAATTTAT
32202713 TATATTTAT
1 TA-ATTTAT
32202722 TAATTTAT
1 TAATTTAT
32202730 TAA-TT-T
1 TAATTTAT
32202736 TAATTTAT
1 TAATTTAT
32202744 GCATTTTTAA
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
5 1 0.03
6 8 0.22
7 8 0.22
8 13 0.35
9 7 0.19
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (8 bp):
TAATTTAT
Found at i:32202731 original size:17 final size:14
Alignment explanation
Indices: 32202692--32202743 Score: 61
Period size: 14 Copynumber: 3.6 Consensus size: 14
32202682 TTTTTAAAAA
32202692 TAATTTATTAATTT
1 TAATTTATTAATTT
*
32202706 T-AGTTATTATATTTAT
1 TAATTTATTA-A-TT-T
32202722 TAATTTATTAATTT
1 TAATTTATTAATTT
32202736 TAATTTAT
1 TAATTTAT
32202744 GCATTTTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
13 7 0.22
14 11 0.34
15 4 0.12
16 3 0.09
17 7 0.22
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (14 bp):
TAATTTATTAATTT
Found at i:32206911 original size:17 final size:16
Alignment explanation
Indices: 32206873--32206925 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 16
32206863 TCTAATAGTA
*
32206873 AAAATTAATTTTAAAT
1 AAAATTAATATTAAAT
**
32206889 TTAATTACATATTAAAT
1 AAAATTA-ATATTAAAT
32206906 AAAATTAATTATATAAAT
1 AAAATTAA-TAT-TAAAT
32206924 AA
1 AA
32206926 TTAAATTTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
16 6 0.21
17 16 0.55
18 7 0.24
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.42
Consensus pattern (16 bp):
AAAATTAATATTAAAT
Found at i:32206996 original size:33 final size:33
Alignment explanation
Indices: 32206958--32207074 Score: 83
Period size: 33 Copynumber: 3.2 Consensus size: 33
32206948 GCATCGATTC
32206958 TAAATTAACTTTCAAATTATTGTGAACCATTTA
1 TAAATTAACTTTCAAATTATTGTGAACCATTTA
* * ** *
32206991 TAAATTAAATAATT-AAATTTAATAATTGTTTAGGCATCGATTC
1 TAAATTAACT--TTCAAA--T--T-ATTG-TGAACCAT---TTA
32207034 TAAATTAACTTTCAAATTATTGTGAACCATTTA
1 TAAATTAACTTTCAAATTATTGTGAACCATTTA
32207067 TAAATTAA
1 TAAATTAA
32207075 GAAAATATTA
Statistics
Matches: 62, Mismatches: 10, Indels: 24
0.65 0.10 0.25
Matches are distributed among these distances:
33 19 0.31
34 3 0.05
35 2 0.03
36 6 0.10
37 4 0.06
38 2 0.03
39 4 0.06
40 6 0.10
41 2 0.03
42 3 0.05
43 11 0.18
ACGTcount: A:0.42, C:0.09, G:0.07, T:0.42
Consensus pattern (33 bp):
TAAATTAACTTTCAAATTATTGTGAACCATTTA
Found at i:32207022 original size:76 final size:77
Alignment explanation
Indices: 32206919--32207074 Score: 305
Period size: 76 Copynumber: 2.0 Consensus size: 77
32206909 ATTAATTATA
32206919 TAAATAATTAAATTTTAATAATTGTTTAGGCATCGATTCTAAATTAACTTTCAAATTATTGTGAA
1 TAAATAATTAAATTTTAATAATTGTTTAGGCATCGATTCTAAATTAACTTTCAAATTATTGTGAA
32206984 CCATTTATAAAT
66 CCATTTATAAAT
32206996 TAAATAATTAAA-TTTAATAATTGTTTAGGCATCGATTCTAAATTAACTTTCAAATTATTGTGAA
1 TAAATAATTAAATTTTAATAATTGTTTAGGCATCGATTCTAAATTAACTTTCAAATTATTGTGAA
32207060 CCATTTATAAAT
66 CCATTTATAAAT
32207072 TAA
1 TAA
32207075 GAAAATATTA
Statistics
Matches: 79, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
76 67 0.85
77 12 0.15
ACGTcount: A:0.41, C:0.09, G:0.08, T:0.42
Consensus pattern (77 bp):
TAAATAATTAAATTTTAATAATTGTTTAGGCATCGATTCTAAATTAACTTTCAAATTATTGTGAA
CCATTTATAAAT
Found at i:32217498 original size:18 final size:18
Alignment explanation
Indices: 32217444--32217501 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 18
32217434 GTGAATGTTG
*
32217444 AGAA-AAGAAAAGAAAGT
1 AGAAGAAGAAAAGAAAGA
*
32217461 AGAAGAAAGATCAAAAAAAGA
1 AGAAG-AAGA--AAAGAAAGA
32217482 AGAAGAAGAAAAGAAAGA
1 AGAAGAAGAAAAGAAAGA
32217500 AG
1 AG
32217502 TAGTGTAACA
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
17 4 0.12
18 10 0.29
19 4 0.12
20 4 0.12
21 12 0.35
ACGTcount: A:0.71, C:0.02, G:0.24, T:0.03
Consensus pattern (18 bp):
AGAAGAAGAAAAGAAAGA
Found at i:32228990 original size:22 final size:21
Alignment explanation
Indices: 32228954--32229023 Score: 86
Period size: 22 Copynumber: 3.2 Consensus size: 21
32228944 CATCAGTGTT
32228954 ATCAGTGGCAATTTATCTGCAA
1 ATCAGT-GCAATTTATCTGCAA
* *
32228976 ATCAGTAGCAGTTTATCTGCTA
1 ATCAGT-GCAATTTATCTGCAA
*
32228998 ATCAGTGACAATTTATTTGCAA
1 ATCAGTG-CAATTTATCTGCAA
32229020 ATCA
1 ATCA
32229024 ATGGTGGCAT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
21 1 0.02
22 40 0.98
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (21 bp):
ATCAGTGCAATTTATCTGCAA
Found at i:32232028 original size:51 final size:51
Alignment explanation
Indices: 32231971--32232068 Score: 178
Period size: 51 Copynumber: 1.9 Consensus size: 51
32231961 GCCCTAATTC
*
32231971 ATTCAGTTTTGTAGTAATTTTTTTCAAAATTCATACTTTAATTATAATAAA
1 ATTCAGTTTCGTAGTAATTTTTTTCAAAATTCATACTTTAATTATAATAAA
*
32232022 ATTCAGTTTCGTAGTATTTTTTTTCAAAATTCATACTTTAATTATAA
1 ATTCAGTTTCGTAGTAATTTTTTTCAAAATTCATACTTTAATTATAA
32232069 AATAATTAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.50
Consensus pattern (51 bp):
ATTCAGTTTCGTAGTAATTTTTTTCAAAATTCATACTTTAATTATAATAAA
Found at i:32244966 original size:6 final size:6
Alignment explanation
Indices: 32244955--32244984 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
32244945 TATGTCTCTT
32244955 TTTTTC TTTTTC TTTTTC TTTTT- TTTTTC T
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC T
32244985 GTGAATAAGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (6 bp):
TTTTTC
Found at i:32252322 original size:13 final size:14
Alignment explanation
Indices: 32252304--32252332 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
32252294 GGATTTTATC
32252304 TTTTATTTTG-GGA
1 TTTTATTTTGTGGA
32252317 TTTTATTTTGTGGA
1 TTTTATTTTGTGGA
32252331 TT
1 TT
32252333 ACTATTGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.14, C:0.00, G:0.21, T:0.66
Consensus pattern (14 bp):
TTTTATTTTGTGGA
Found at i:32259604 original size:24 final size:24
Alignment explanation
Indices: 32259572--32259619 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
32259562 ATTGGGCCAA
*
32259572 TTGCCTGACTTGAAAGTTAATTTT
1 TTGCCTGACTTGAAAATTAATTTT
32259596 TTGCCTGACTTGAAAATTAATTTT
1 TTGCCTGACTTGAAAATTAATTTT
32259620 CAAACATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (24 bp):
TTGCCTGACTTGAAAATTAATTTT
Found at i:32268442 original size:45 final size:45
Alignment explanation
Indices: 32268108--32268423 Score: 461
Period size: 45 Copynumber: 7.0 Consensus size: 45
32268098 AAGGCTGGTG
*
32268108 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTACTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* * *
32268153 TCTTCGATCTACTTTGCTGCCAATACAGAAAAACAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* * * *
32268198 ACTTCGATCTACTTCACTGCCGATACAAGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* * * *
32268243 TCTTCAATCTACTTCGCTGCCAATACCGGAAGATAAGATCTGTTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* *
32268288 TCTTTGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* *
32268333 TCTTCGATCTATTTTGCTGCCAATACAGGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
* * *
32268378 TCTTCGATCTACTTCACTGCCAGTACAAGAAGACAAGATCTGCTA
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
32268423 T
1 T
32268424 TTTCAACCTA
Statistics
Matches: 239, Mismatches: 32, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 239 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.29
Consensus pattern (45 bp):
TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
Found at i:32277280 original size:13 final size:13
Alignment explanation
Indices: 32277262--32277286 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32277252 GATTCTATTT
32277262 AGAAAACTTTACC
1 AGAAAACTTTACC
32277275 AGAAAACTTTAC
1 AGAAAACTTTAC
32277287 ATAAAACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.20, G:0.08, T:0.24
Consensus pattern (13 bp):
AGAAAACTTTACC
Found at i:32283303 original size:25 final size:26
Alignment explanation
Indices: 32283266--32283326 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
32283256 TTATAAATCA
* *
32283266 AAAAAAATATCTTTAGA-AATTTTCT
1 AAAATAATATCTTCAGAGAATTTTCT
*
32283291 AAAATAATCTCTTCAGAGAATTTTCT
1 AAAATAATATCTTCAGAGAATTTTCT
*
32283317 GAAATAATAT
1 AAAATAATAT
32283327 TTCTCTTAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 14 0.47
26 16 0.53
ACGTcount: A:0.46, C:0.10, G:0.07, T:0.38
Consensus pattern (26 bp):
AAAATAATATCTTCAGAGAATTTTCT
Found at i:32286256 original size:16 final size:16
Alignment explanation
Indices: 32286236--32286270 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
32286226 AGTAAACCAT
*
32286236 AAAAACCCTAAACCTA
1 AAAAACCATAAACCTA
*
32286252 AAAAATCATAAACCTA
1 AAAAACCATAAACCTA
32286268 AAA
1 AAA
32286271 CAAAAAACCC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.63, C:0.23, G:0.00, T:0.14
Consensus pattern (16 bp):
AAAAACCATAAACCTA
Found at i:32288903 original size:29 final size:31
Alignment explanation
Indices: 32288865--32288934 Score: 90
Period size: 29 Copynumber: 2.3 Consensus size: 31
32288855 AACAATAATG
*
32288865 TAAGTGACTAAAACGTAACAT-A-TCAAACA
1 TAAGTGACTAAAACGTAACATAAGACAAACA
* *
32288894 TAAGTGACTAAAATGTAATATAAGACAAACA
1 TAAGTGACTAAAACGTAACATAAGACAAACA
*
32288925 AAAGTGACTA
1 TAAGTGACTA
32288935 TTTTAAAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 19 0.54
30 1 0.03
31 15 0.43
ACGTcount: A:0.53, C:0.13, G:0.13, T:0.21
Consensus pattern (31 bp):
TAAGTGACTAAAACGTAACATAAGACAAACA
Found at i:32290706 original size:20 final size:20
Alignment explanation
Indices: 32290683--32290729 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
32290673 AATAAGTAAA
32290683 AAAAATATTAAAAGTTAATG
1 AAAAATATTAAAAGTTAATG
* * *
32290703 AAAAATATTAAAATTTCATT
1 AAAAATATTAAAAGTTAATG
32290723 AAAAATA
1 AAAAATA
32290730 GAAAAGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (20 bp):
AAAAATATTAAAAGTTAATG
Found at i:32290768 original size:10 final size:10
Alignment explanation
Indices: 32290755--32290797 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
32290745 AAATCGTAAC
32290755 AAAATTATAA
1 AAAATTATAA
32290765 AAAATTATAA
1 AAAATTATAA
***
32290775 ATTTTTAT-A
1 AAAATTATAA
32290784 AAAATTATAA
1 AAAATTATAA
32290794 AAAA
1 AAAA
32290798 AACTATAAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
9 6 0.23
10 20 0.77
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
AAAATTATAA
Found at i:32291010 original size:19 final size:18
Alignment explanation
Indices: 32290983--32291054 Score: 56
Period size: 19 Copynumber: 3.7 Consensus size: 18
32290973 CTTCTTTTGG
*
32290983 TACACTTTTATAATCTTTT
1 TACAATTTTATAAT-TTTT
32291002 TACAATTTT-TATATTTCTT
1 TACAATTTTATA-ATTT-TT
*
32291021 TACATTTTTTTATAATTTTCT
1 TACA--ATTTTATAATTTT-T
*
32291042 TACAACTTTATAA
1 TACAATTTTATAA
32291055 AATTTTATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
18 4 0.09
19 23 0.53
20 1 0.02
21 13 0.30
22 2 0.05
ACGTcount: A:0.29, C:0.12, G:0.00, T:0.58
Consensus pattern (18 bp):
TACAATTTTATAATTTTT
Found at i:32291044 original size:21 final size:20
Alignment explanation
Indices: 32290988--32291060 Score: 62
Period size: 21 Copynumber: 3.6 Consensus size: 20
32290978 TTTGGTACAC
32290988 TTTTATAATCTTT-TTACAAT
1 TTTTATAAT-TTTCTTACAAT
*
32291008 TTTTAT-A-TTTCTTTACATTT
1 TTTTATAATTTTC-TTACA-AT
32291028 TTTTATAATTTTCTTACAACT
1 TTTTATAATTTTCTTACAA-T
* *
32291049 TTATAAAATTTT
1 TTTTATAATTTT
32291061 ATATATTTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
17 3 0.07
19 6 0.14
20 13 0.30
21 17 0.40
22 4 0.09
ACGTcount: A:0.29, C:0.10, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTATAATTTTCTTACAAT
Found at i:32293478 original size:44 final size:44
Alignment explanation
Indices: 32293430--32293574 Score: 136
Period size: 44 Copynumber: 3.3 Consensus size: 44
32293420 ATAATAAATC
32293430 AAATACACTAAAAACATTAAAATAAATGTTTCTTAACAAATTGA
1 AAATACACTAAAAACATTAAAATAAATGTTTCTTAACAAATTGA
* * ** *** * * *
32293474 AAATACATTAAAAAATATTTATACTTAAATAAAT-ATAATAAA---C
1 AAATACACT-AAAAACA-TTA-AAATAAATGTTTCTTAACAAATTGA
32293517 AAATACACTAAAAACATTAAAATAAATGTTTCTTAACAAATTGA
1 AAATACACTAAAAACATTAAAATAAATGTTTCTTAACAAATTGA
*
32293561 AAATACATTAAAAA
1 AAATACACTAAAAA
32293575 ATATTTATAC
Statistics
Matches: 73, Mismatches: 21, Indels: 14
0.68 0.19 0.13
Matches are distributed among these distances:
40 7 0.10
41 9 0.12
42 6 0.08
43 8 0.11
44 21 0.29
45 6 0.08
46 9 0.12
47 7 0.10
ACGTcount: A:0.58, C:0.10, G:0.03, T:0.30
Consensus pattern (44 bp):
AAATACACTAAAAACATTAAAATAAATGTTTCTTAACAAATTGA
Found at i:32293529 original size:87 final size:88
Alignment explanation
Indices: 32293416--32293592 Score: 347
Period size: 87 Copynumber: 2.0 Consensus size: 88
32293406 ATCAATTTAA
32293416 AAATATAATAAATCAAATACACTAAAAACATTAAAATAAATGTTTCTTAACAAATTGAAAATACA
1 AAATATAATAAATCAAATACACTAAAAACATTAAAATAAATGTTTCTTAACAAATTGAAAATACA
32293481 TTAAAAAATATTTATACTTAAAT
66 TTAAAAAATATTTATACTTAAAT
32293504 AAATATAATAAA-CAAATACACTAAAAACATTAAAATAAATGTTTCTTAACAAATTGAAAATACA
1 AAATATAATAAATCAAATACACTAAAAACATTAAAATAAATGTTTCTTAACAAATTGAAAATACA
32293568 TTAAAAAATATTTATACTTAAAT
66 TTAAAAAATATTTATACTTAAAT
32293591 AA
1 AA
32293593 CATTAAGATA
Statistics
Matches: 89, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
87 77 0.87
88 12 0.13
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.31
Consensus pattern (88 bp):
AAATATAATAAATCAAATACACTAAAAACATTAAAATAAATGTTTCTTAACAAATTGAAAATACA
TTAAAAAATATTTATACTTAAAT
Found at i:32294754 original size:16 final size:17
Alignment explanation
Indices: 32294733--32294766 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
32294723 AATAATAGGG
32294733 GCAAAAGCAT-AATTTT
1 GCAAAAGCATGAATTTT
*
32294749 GCAAAAGTATGAATTTT
1 GCAAAAGCATGAATTTT
32294766 G
1 G
32294767 GATTGAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.41, C:0.09, G:0.18, T:0.32
Consensus pattern (17 bp):
GCAAAAGCATGAATTTT
Found at i:32298270 original size:37 final size:37
Alignment explanation
Indices: 32298229--32298305 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
32298219 AAAAATAAAA
32298229 TTAAAAAGCAAATATT-TCAT-AAAATACATAAAGAAAT
1 TTAAAAA-CAAATATTAT-ATCAAAATACATAAAGAAAT
* * *
32298266 TTAAAAATAAGTATTATATCAAAATACATAAAGATAT
1 TTAAAAACAAATATTATATCAAAATACATAAAGAAAT
32298303 TTA
1 TTA
32298306 CATATATTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
36 8 0.23
37 27 0.77
ACGTcount: A:0.57, C:0.06, G:0.05, T:0.31
Consensus pattern (37 bp):
TTAAAAACAAATATTATATCAAAATACATAAAGAAAT
Found at i:32301660 original size:26 final size:26
Alignment explanation
Indices: 32301626--32301686 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
32301616 ACTTTATTAA
***
32301626 GGGTAAAATCGTCAAAATTTTGTTAG
1 GGGTAAAATCGTCAAAATTTTACCAG
32301652 GGGTAAAATCGTCAAAATTTTACCAG
1 GGGTAAAATCGTCAAAATTTTACCAG
32301678 GGGTAAAAT
1 GGGTAAAAT
32301687 TGAGATGAGA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.38, C:0.10, G:0.23, T:0.30
Consensus pattern (26 bp):
GGGTAAAATCGTCAAAATTTTACCAG
Found at i:32304866 original size:16 final size:17
Alignment explanation
Indices: 32304835--32304867 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
32304825 TATATTGATT
32304835 TTTTACAATCATAATTA
1 TTTTACAATCATAATTA
*
32304852 TTTTATAAT-ATAATTA
1 TTTTACAATCATAATTA
32304868 AAAGACGGTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTTACAATCATAATTA
Found at i:32306549 original size:2 final size:2
Alignment explanation
Indices: 32306542--32306566 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
32306532 GTTTGTATTT
32306542 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
32306567 TTAACGTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:32309332 original size:15 final size:17
Alignment explanation
Indices: 32309311--32309351 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
32309301 TAATCAACTA
32309311 AAAATTATAAAAAT-AT
1 AAAATTATAAAAATGAT
*
32309327 -AAATTATCAAAATGAT
1 AAAATTATAAAAATGAT
32309343 AAAATTATA
1 AAAATTATA
32309352 TTTTTACTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 12 0.57
16 2 0.10
17 7 0.33
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.32
Consensus pattern (17 bp):
AAAATTATAAAAATGAT
Found at i:32314486 original size:30 final size:29
Alignment explanation
Indices: 32314447--32314513 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
32314437 ACGAAAAAAA
*
32314447 GCCGTTTTTTTTCAAAATTTACCGAAATGG
1 GCCGATTTTTTT-AAAATTTACCGAAATGG
** *
32314477 GCCGATTTTTTTATTATTTACCGGAATGG
1 GCCGATTTTTTTAAAATTTACCGAAATGG
*
32314506 TCC-ATTTT
1 GCCGATTTT
32314514 CCGGGAAATC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 5 0.16
29 16 0.50
30 11 0.34
ACGTcount: A:0.22, C:0.16, G:0.16, T:0.45
Consensus pattern (29 bp):
GCCGATTTTTTTAAAATTTACCGAAATGG
Found at i:32314908 original size:123 final size:123
Alignment explanation
Indices: 32314689--32315036 Score: 579
Period size: 123 Copynumber: 2.8 Consensus size: 123
32314679 TTATTTCGAC
* *
32314689 TTGACGTTTATGAGCAAATAGTATAAAATCACTTCTACCAGGATGCTATTTGAGAAGAAATTATG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCACTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
* * * *
32314754 AAATCGCACCCTCGTGGACGGGATTTTGCTACAGTAGGTCATGTAAGGAATAATTTTT
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGATCATGTAAGAAATAATTTTT
*
32314812 TTGACGTTTCTGAGCAAATAGTATAAAATCACTTCTACAAGGATGCTATTTGAGAAGAAATTGTG
1 TTGACGTTTCTGAGCAAATAGTATAAAATCACTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
* * *
32314877 AAATCGTGCCCTCGTGGACGTGATTTTGCTACAGTTGATCATGTAAGAAATAATTTTT
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGATCATGTAAGAAATAATTTTT
*
32314935 TTGACGTTTCTGAGCAAATAGTATAAAATCACTTCTACCAGGATGCTATTTGAGAAGAAATTGTA
1 TTGACGTTTCTGAGCAAATAGTATAAAATCACTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
* *
32315000 AAATCGCGCTCTCGTGGACACGATTTTGCTACAGTAG
66 AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAG
32315037 CAAGTTTGGG
Statistics
Matches: 209, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
123 209 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (123 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCACTTCTACCAGGATGCTATTTGAGAAGAAATTGTG
AAATCGCGCCCTCGTGGACGCGATTTTGCTACAGTAGATCATGTAAGAAATAATTTTT
Found at i:32318056 original size:10 final size:10
Alignment explanation
Indices: 32318041--32318065 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
32318031 CAAATTTAAC
32318041 ATTATGTAAA
1 ATTATGTAAA
32318051 ATTATGTAAA
1 ATTATGTAAA
32318061 ATTAT
1 ATTAT
32318066 TAAGNNNNNN
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:32318236 original size:69 final size:69
Alignment explanation
Indices: 32318101--32318237 Score: 197
Period size: 69 Copynumber: 2.0 Consensus size: 69
32318091 NNNNTAAAAT
* ** *
32318101 TATGTAAAATTATTAAGTCCAAAAATTGTGTTAATGGTTAGTAATGGTTAGTAAAATTATACAAT
1 TATGTAAAATTATTAAGTCCAAAAACTGTGTTAATGGTTAGTAATAATTAGTAAAATTATAAAAT
32318166 TATG
66 TATG
*
32318170 TATGTAAAATTATTAAGTCCAAAAACTGTGTTAATGGTTAGTAA-AATTA-TCAAATTATGTAAA
1 TATGTAAAATTATTAAGTCCAAAAACTGTGTTAATGGTTAGTAATAATTAGTAAAATTA--TAAA
32318233 ATTAT
64 ATTAT
32318238 TAAGTCCAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
67 7 0.11
68 3 0.05
69 51 0.84
ACGTcount: A:0.42, C:0.05, G:0.14, T:0.39
Consensus pattern (69 bp):
TATGTAAAATTATTAAGTCCAAAAACTGTGTTAATGGTTAGTAATAATTAGTAAAATTATAAAAT
TATG
Found at i:32318255 original size:55 final size:55
Alignment explanation
Indices: 32318142--32318287 Score: 247
Period size: 55 Copynumber: 2.6 Consensus size: 55
32318132 TAATGGTTAG
32318142 TAATGGTTAGTAAAATTATACAATTATGTATGTAAAATTATTAAGTCCAAAAACTGTGT
1 TAATGGTTAGTAAAATTAT-CAA--AT-TATGTAAAATTATTAAGTCCAAAAACTGTGT
*
32318201 TAATGGTTAGTAAAATTATCAAATTATGTAAAATTATTAAGTCCAAAAATTGTGT
1 TAATGGTTAGTAAAATTATCAAATTATGTAAAATTATTAAGTCCAAAAACTGTGT
32318256 TAATGGTTAGTAAAATTATCAAATTATGTAAA
1 TAATGGTTAGTAAAATTATCAAATTATGTAAA
32318288 TTAGGTTAGG
Statistics
Matches: 86, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
55 62 0.72
56 2 0.02
58 3 0.03
59 19 0.22
ACGTcount: A:0.44, C:0.05, G:0.13, T:0.38
Consensus pattern (55 bp):
TAATGGTTAGTAAAATTATCAAATTATGTAAAATTATTAAGTCCAAAAACTGTGT
Found at i:32318381 original size:29 final size:29
Alignment explanation
Indices: 32318284--32318378 Score: 183
Period size: 29 Copynumber: 3.3 Consensus size: 29
32318274 TCAAATTATG
32318284 TAAATTAGGTTAGGGTTAGGGTTTTTAAT
1 TAAATTAGGTTAGGGTTAGGGTTTTTAAT
32318313 TAAATTAGGTTAGGGTTAGGGTTTTTAAT
1 TAAATTAGGTTAGGGTTAGGGTTTTTAAT
32318342 TAAATTAGGTTAGGGTTAGGGTTTTTAAT
1 TAAATTAGGTTAGGGTTAGGGTTTTTAAT
32318371 T-AATTAGG
1 TAAATTAGG
32318379 GTTTTTAATT
Statistics
Matches: 66, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
28 7 0.11
29 59 0.89
ACGTcount: A:0.28, C:0.00, G:0.27, T:0.44
Consensus pattern (29 bp):
TAAATTAGGTTAGGGTTAGGGTTTTTAAT
Found at i:32318405 original size:16 final size:18
Alignment explanation
Indices: 32318357--32318402 Score: 78
Period size: 17 Copynumber: 2.7 Consensus size: 18
32318347 TAGGTTAGGG
32318357 TTAGGGTTTTTAATT-AA
1 TTAGGGTTTTTAATTAAA
32318374 TTAGGGTTTTTAATTAAA
1 TTAGGGTTTTTAATTAAA
32318392 TTA-GGTTTTTA
1 TTAGGGTTTTTA
32318403 TTACATCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
17 23 0.82
18 5 0.18
ACGTcount: A:0.28, C:0.00, G:0.17, T:0.54
Consensus pattern (18 bp):
TTAGGGTTTTTAATTAAA
Found at i:32318507 original size:25 final size:25
Alignment explanation
Indices: 32318398--32318583 Score: 92
Period size: 26 Copynumber: 7.7 Consensus size: 25
32318388 TAAATTAGGT
32318398 TTTTATTACATCAAATAGAACTTCTA
1 TTTTATTACATCAAATA-AACTTCTA
*
32318424 TTTTATTATATCAAAT-AA-TATC-A
1 TTTTATTACATCAAATAAACT-TCTA
** * * *
32318447 --AAATAAC-TCAAAAAAATTTCTA
1 TTTTATTACATCAAATAAACTTCTA
** *
32318469 TGCCTATTATATCAAATAAACTTCTA
1 T-TTTATTACATCAAATAAACTTCTA
32318495 TTTTATTACATCAAAT-AA-TATC-A
1 TTTTATTACATCAAATAAACT-TCTA
** * *
32318518 --AAATAAC-TCGAAA-AAAATTCTA
1 TTTTATTACATC-AAATAAACTTCTA
**
32318540 TGCGTATTACATCAAATAAACTTCTA
1 T-TTTATTACATCAAATAAACTTCTA
32318566 TTTTATTACATCAAATAA
1 TTTTATTACATCAAATAA
32318584 TAAATTTAAA
Statistics
Matches: 118, Mismatches: 24, Indels: 37
0.66 0.13 0.21
Matches are distributed among these distances:
20 7 0.06
21 18 0.15
22 4 0.03
23 4 0.03
24 8 0.07
25 37 0.31
26 40 0.34
ACGTcount: A:0.45, C:0.15, G:0.03, T:0.38
Consensus pattern (25 bp):
TTTTATTACATCAAATAAACTTCTA
Found at i:32318508 original size:71 final size:71
Alignment explanation
Indices: 32318401--32318585 Score: 318
Period size: 71 Copynumber: 2.6 Consensus size: 71
32318391 ATTAGGTTTT
*
32318401 TATTACATCAAATAGAACTTCTATTTTATTATATCAAATAATATCAAAATAACTC-AAAAAAATT
1 TATTACATCAAATA-AACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAAA-T
32318465 TCTATGCC
64 TCTATGCC
*
32318473 TATTATATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAAATTC
1 TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAAATTC
*
32318538 TATGCG
66 TATGCC
32318544 TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATA
1 TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATA
32318586 AATTTAAATA
Statistics
Matches: 108, Mismatches: 4, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
71 88 0.81
72 20 0.19
ACGTcount: A:0.46, C:0.15, G:0.03, T:0.37
Consensus pattern (71 bp):
TATTACATCAAATAAACTTCTATTTTATTACATCAAATAATATCAAAATAACTCGAAAAAAATTC
TATGCC
Found at i:32319645 original size:18 final size:18
Alignment explanation
Indices: 32319618--32319652 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
32319608 CGGAAAAGGA
* *
32319618 TACATGTAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
32319636 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
32319653 AAACCCNNNN
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.09, G:0.34, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:32320835 original size:5 final size:5
Alignment explanation
Indices: 32320825--32320849 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
32320815 CTATTTATTG
32320825 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
32320850 CAATTCTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:32324091 original size:9 final size:9
Alignment explanation
Indices: 32324077--32324114 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
32324067 GTATAGTTTG
32324077 TTATTCGAA
1 TTATTCGAA
32324086 TTATTCGAA
1 TTATTCGAA
*
32324095 TTATTCGAG
1 TTATTCGAA
32324104 TTATTCGAA
1 TTATTCGAA
32324113 TT
1 TT
32324115 CGAAAACTCA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.29, C:0.11, G:0.13, T:0.47
Consensus pattern (9 bp):
TTATTCGAA
Found at i:32324183 original size:9 final size:9
Alignment explanation
Indices: 32324166--32324196 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
32324156 TCGAGTTGAT
32324166 TCGAATAAC
1 TCGAATAAC
*
32324175 TCGATTAAC
1 TCGAATAAC
32324184 TCGAATAAC
1 TCGAATAAC
32324193 TCGA
1 TCGA
32324197 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:32325047 original size:109 final size:109
Alignment explanation
Indices: 32324856--32325915 Score: 2007
Period size: 109 Copynumber: 9.7 Consensus size: 109
32324846 TTATTTTTTA
32324856 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
1 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
32324921 CAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCTT
66 CAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCTT
32324965 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
1 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
32325030 CAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCTT
66 CAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCTT
32325074 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
1 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
32325139 CAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCTT
66 CAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCTT
32325183 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
1 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
32325248 CAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCTT
66 CAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCTT
32325292 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
1 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
32325357 CAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCTT
66 CAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCTT
32325401 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
1 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
32325466 CAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCTT
66 CAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCTT
32325510 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
1 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
*
32325575 CAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCGT
66 CAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCTT
* *
32325619 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTAGGTTTTGATTTTTCTCGTTCGACCAAATGGC
1 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
32325684 CAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCTT
66 CAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCTT
32325728 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
1 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
* *
32325793 CAAATATCCTTTTAAAAATTTCAAAATAATGCAATGTTTTGCGT
66 CAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCTT
* * * * *
32325837 TTAGAAATTCGAGAAAACATGCCCTAACGTGCTGGGTTTCGA--TTTCTCGTTGGACCAAATAGC
1 TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
*
32325900 CAAATATCCTCTTAAA
66 CAAATATCCTTTTAAA
32325916 TCTTAATCCA
Statistics
Matches: 937, Mismatches: 14, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
107 34 0.04
109 903 0.96
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (109 bp):
TTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTCTCGTTCGACCAAATGGC
CAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCTT
Found at i:32337234 original size:44 final size:44
Alignment explanation
Indices: 32337170--32337771 Score: 249
Period size: 44 Copynumber: 13.8 Consensus size: 44
32337160 TAACAAGTCC
* * *
32337170 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCT
1 TATCTCCCTGAGCAGTAGTGGAGTAGATTGAAGACTGTAGATCT
* * * * *
32337214 TATCTCCCTAAGCAGTAGTGGAGTAGATTAAAGACGGCAAATCT
1 TATCTCCCTGAGCAGTAGTGGAGTAGATTGAAGACTGTAGATCT
* * * * * ***
32337258 TATCT-TCTCGAG-A-TAGTAGGAAGCATATTTAAGCCACCAG-TCT
1 TATCTCCCT-GAGCAGTAGT-GG-AGTAGATTGAAGACTGTAGATCT
* * * * *
32337301 TATCTCCGTGAGCAGCAGTAGAGTAGGTTGAAGATTGTAGATCT
1 TATCTCCCTGAGCAGTAGTGGAGTAGATTGAAGACTGTAGATCT
* * *
32337345 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGAC-G-ATGAATCT
1 TATCTCCCTGAGCAGTAGTGGAGTAGATTGAAGACTGTA-G-ATCT
* ** * * *** *
32337389 TATCT-TCTCGAG-A-TAGTAGGAAGCGGATTTAAGCCACCAG-TCC
1 TATCTCCCT-GAGCAGTAGT-GG-AGTAGATTGAAGACTGTAGATCT
* * *
32337432 TATCTCTCTGAGCAGCAGTGGAGTA-AGTTGAAGATTGTAGATCT
1 TATCTCCCTGAGCAGTAGTGGAGTAGA-TTGAAGACTGTAGATCT
* * * *
32337476 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGT-GAATCT
1 TATCTCCCTGAGCAGTAGTGGAGTAGATTGAAGACTGTAG-ATCT
* * * *** *
32337520 TATCTTCCC-GAG-A-TAGTAGGAGGCAGATTTAAGCCACCAG-TCC
1 TATC-TCCCTGAGCAGTAGT-GGA-GTAGATTGAAGACTGTAGATCT
* * * *
32337563 TATCTCCCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCT
1 TATCTCCCTGAGCAGTAGTGGAGTAGATTGAAGACTGTAGATCT
* * * *
32337607 TATCTCCCTAAGCAGTAGTGGAGAAGATCGAAGAC-G-ACGAATTT
1 TATCTCCCTGAGCAGTAGTGGAGTAGATTGAAGACTGTA-G-ATCT
* * * * *** *
32337651 TATCTTCCC-GAG-A-TAGTAGAAAGCAGATTTAAGCCACCAG-TCC
1 TATC-TCCCTGAGCAGTAGT-G-GAGTAGATTGAAGACTGTAGATCT
** * * *
32337694 TATCTCCCTGAGCAACATTGGAGTAGGTTGAAGATTGTAGATCT
1 TATCTCCCTGAGCAGTAGTGGAGTAGATTGAAGACTGTAGATCT
* * *
32337738 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA
1 TATCTCCCTGAGCAGTAGTGGAGTAGATTGAAGA
32337772 TGGCGAATCT
Statistics
Matches: 401, Mismatches: 117, Indels: 80
0.67 0.20 0.13
Matches are distributed among these distances:
42 27 0.07
43 99 0.25
44 250 0.62
45 23 0.06
46 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGAGCAGTAGTGGAGTAGATTGAAGACTGTAGATCT
Found at i:32337857 original size:131 final size:131
Alignment explanation
Indices: 32337165--32337836 Score: 1119
Period size: 131 Copynumber: 5.1 Consensus size: 131
32337155 CATCATAACA
32337165 AGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
* ** * *
32337230 AGTGGAGTAGATTAAAGACGGCAAATCTTATCTTCTCGAGATAGTAGGAAGCATATTTAAGCCAC
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCTCGAGATAGTAGGAAGCAGATTTAAGCCAC
32337295 C
131 C
* * *
32337296 AGTCTTATCTCCGTGAGCAGCAGTAGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
** *
32337361 AGTGGAGCAGATCGAAGACGATGAATCTTATCTTCTCGAGATAGTAGGAAGCGGATTTAAGCCAC
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCTCGAGATAGTAGGAAGCAGATTTAAGCCAC
32337426 C
131 C
* *
32337427 AGTCCTATCTCTCTGAGCAGCAGTGGAGTAAGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
* * *
32337492 AGTGGAGCAGATCGAAGACGGTGAATCTTATCTTCCCGAGATAGTAGGAGGCAGATTTAAGCCAC
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCTCGAGATAGTAGGAAGCAGATTTAAGCCAC
32337557 C
131 C
*
32337558 AGTCCTATCTCCCTGAGTAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
* * * * *
32337623 AGTGGAGAAGATCGAAGACGACGAATTTTATCTTCCCGAGATAGTAGAAAGCAGATTTAAGCCAC
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCTCGAGATAGTAGGAAGCAGATTTAAGCCAC
32337688 C
131 C
* *
32337689 AGTCCTATCTCCCTGAGCAACATTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
1 AGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
*
32337754 AGTGGAGCAGATCGAAGATGGCGAATCTTATCTTCTCGAGATAGTAGGAAGCAGATTTAAGCCAC
66 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCTCGAGATAGTAGGAAGCAGATTTAAGCCAC
32337819 C
131 C
32337820 AGTCCTATCTCCCTGAG
1 AGTCCTATCTCCCTGAG
32337837 TTGCAGTAGA
Statistics
Matches: 503, Mismatches: 38, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
131 503 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (131 bp):
AGTCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCTCGAGATAGTAGGAAGCAGATTTAAGCCAC
C
Found at i:32339839 original size:29 final size:30
Alignment explanation
Indices: 32339806--32339866 Score: 79
Period size: 32 Copynumber: 2.0 Consensus size: 30
32339796 TGCATATTTC
* *
32339806 TATACTTTATATAC-TTTATAATTTATATA
1 TATACGTTATATACTTTTATAATATATATA
32339835 TATACGTTATATACATTTTTATAATATATATA
1 TATACGTTATATAC--TTTTATAATATATATA
32339867 CATATATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
29 13 0.48
32 14 0.52
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (30 bp):
TATACGTTATATACTTTTATAATATATATA
Done.