Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 97 of 145
Found at i:32344189 original size:29 final size:29
Alignment explanation
Indices: 32344156--32344213 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
32344146 ATGAATTATG
32344156 AAGTTTGATGGTAGAAATAGAAAGGTTGT
1 AAGTTTGATGGTAGAAATAGAAAGGTTGT
*
32344185 AAGTTTTATGGTAGAAATAGAAAGGTTGT
1 AAGTTTGATGGTAGAAATAGAAAGGTTGT
32344214 TGATAGATAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.38, C:0.00, G:0.29, T:0.33
Consensus pattern (29 bp):
AAGTTTGATGGTAGAAATAGAAAGGTTGT
Found at i:32344920 original size:24 final size:25
Alignment explanation
Indices: 32344868--32344914 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
32344858 TGGCCCTCTT
*
32344868 GAGCTTCACGTTATATAGTTCTTGC
1 GAGCTTCACGTTATATAGCTCTTGC
*
32344893 GAGCTTCTCGTTA-ATAGCTCTT
1 GAGCTTCACGTTATATAGCTCTT
32344915 CGGAGCATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.40
Consensus pattern (25 bp):
GAGCTTCACGTTATATAGCTCTTGC
Found at i:32345007 original size:26 final size:25
Alignment explanation
Indices: 32344972--32345072 Score: 103
Period size: 26 Copynumber: 3.9 Consensus size: 25
32344962 GCAGCTCTTA
* **
32344972 TGAGCATCCCATTATATGGCTCTTCG
1 TGAGCTTCCCATTA-ATGGCTCTTTT
*
32344998 TGAGCTTCCCGATTAAAGGCTCTTTT
1 TGAGCTTCCC-ATTAATGGCTCTTTT
*
32345024 TGAGCTTCCTGATTAATGGCTCTTTT
1 TGAGCTTCC-CATTAATGGCTCTTTT
**
32345050 TGAGCTTCCTGTTTAATGGCTCT
1 TGAGCTTCC-CATTAATGGCTCT
32345073 CCTAAGCTTC
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
26 62 0.94
27 4 0.06
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.41
Consensus pattern (25 bp):
TGAGCTTCCCATTAATGGCTCTTTT
Found at i:32351419 original size:24 final size:24
Alignment explanation
Indices: 32351391--32351438 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
32351381 CAAATACAAC
32351391 AATGACATTCACATTAGAGATGAT
1 AATGACATTCACATTAGAGATGAT
32351415 AATGACATTCACATTAGAGATGAT
1 AATGACATTCACATTAGAGATGAT
32351439 CATTTACATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (24 bp):
AATGACATTCACATTAGAGATGAT
Found at i:32353427 original size:81 final size:82
Alignment explanation
Indices: 32353308--32353495 Score: 240
Period size: 81 Copynumber: 2.3 Consensus size: 82
32353298 ACCGAAGTGT
* * **
32353308 AAACAGGGGCAC-AAGTGTGC-ATTCAGGGGTATCGAAGTACAAACAGGGGCATGTATGTGCAAT
1 AAACAGGGGCACGCA-TGTGCAATTCAGGGGTATCAAAGTACAAACAGGGGCACATATGTGCAAT
*
32353371 TCAG-GGTACAAAAGTAC
65 TCAGAGGTACAAAAGTAA
* *
32353388 AAACAGGGGCATGCATGTGCAATTCAGGGGTA-CAAAAGTACAAACAGGGGCACATATGTGTAAT
1 AAACAGGGGCACGCATGTGCAATTCAGGGGTATC-AAAGTACAAACAGGGGCACATATGTGCAAT
*
32353452 TTAGAGGTACAAAAGTAA
65 TCAGAGGTACAAAAGTAA
* *
32353470 AAATAGGGGCACGTATGTGCAATTCA
1 AAACAGGGGCACGCATGTGCAATTCA
32353496 TACAACAATT
Statistics
Matches: 93, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
80 17 0.18
81 41 0.44
82 35 0.38
ACGTcount: A:0.37, C:0.15, G:0.28, T:0.20
Consensus pattern (82 bp):
AAACAGGGGCACGCATGTGCAATTCAGGGGTATCAAAGTACAAACAGGGGCACATATGTGCAATT
CAGAGGTACAAAAGTAA
Found at i:32353431 original size:41 final size:41
Alignment explanation
Indices: 32353308--32353495 Score: 231
Period size: 41 Copynumber: 4.6 Consensus size: 41
32353298 ACCGAAGTGT
* *
32353308 AAACAGGGGCAC-AAGTGTGC-ATTCAGGGGTATC-GAAGTAC
1 AAACAGGGGCACGTA-TGTGCAATTCAGGGGTA-CAAAAGTAC
*
32353348 AAACAGGGGCATGTATGTGCAATTCA-GGGTACAAAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACAAAAGTAC
* *
32353388 AAACAGGGGCATGCATGTGCAATTCAGGGGTACAAAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACAAAAGTAC
* * * * *
32353429 AAACAGGGGCACATATGTGTAATTTAGAGGTACAAAAGTAA
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACAAAAGTAC
*
32353470 AAATAGGGGCACGTATGTGCAATTCA
1 AAACAGGGGCACGTATGTGCAATTCA
32353496 TACAACAATT
Statistics
Matches: 129, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 52 0.40
41 76 0.59
ACGTcount: A:0.37, C:0.15, G:0.28, T:0.20
Consensus pattern (41 bp):
AAACAGGGGCACGTATGTGCAATTCAGGGGTACAAAAGTAC
Found at i:32353437 original size:20 final size:20
Alignment explanation
Indices: 32353374--32353437 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
32353364 GTGCAATTCA
32353374 GGGTACAAAAGTACAAACAG
1 GGGTACAAAAGTACAAACAG
* *** * * *
32353394 GGGCATGCATGTGCAATTCAG
1 GGGTACAAAAGTACAA-ACAG
32353415 GGGTACAAAAGTACAAACAG
1 GGGTACAAAAGTACAAACAG
32353435 GGG
1 GGG
32353438 CACATATGTG
Statistics
Matches: 29, Mismatches: 14, Indels: 2
0.64 0.31 0.04
Matches are distributed among these distances:
20 16 0.55
21 13 0.45
ACGTcount: A:0.39, C:0.16, G:0.31, T:0.14
Consensus pattern (20 bp):
GGGTACAAAAGTACAAACAG
Found at i:32355111 original size:27 final size:27
Alignment explanation
Indices: 32355073--32355126 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
32355063 ATTAAACAAG
32355073 GAAAGGTAGTAAGTTCCATAGGAACTT
1 GAAAGGTAGTAAGTTCCATAGGAACTT
32355100 GAAAGGTAGTAAGTTCCATAGGAACTT
1 GAAAGGTAGTAAGTTCCATAGGAACTT
32355127 ACCTTTCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.11, G:0.26, T:0.26
Consensus pattern (27 bp):
GAAAGGTAGTAAGTTCCATAGGAACTT
Found at i:32361663 original size:12 final size:12
Alignment explanation
Indices: 32361646--32361672 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
32361636 ATTTGTTATC
32361646 TTTGTTAACATA
1 TTTGTTAACATA
32361658 TTTGTTAACATA
1 TTTGTTAACATA
32361670 TTT
1 TTT
32361673 CTTTCTAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (12 bp):
TTTGTTAACATA
Found at i:32363324 original size:14 final size:13
Alignment explanation
Indices: 32363305--32363335 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
32363295 TAGATTTGGC
32363305 ATTAATTAATCTTA
1 ATTAATTAA-CTTA
32363319 ATTAATTAACTTA
1 ATTAATTAACTTA
32363332 ATTA
1 ATTA
32363336 TGGCTTAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.47
14 9 0.53
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (13 bp):
ATTAATTAACTTA
Found at i:32363450 original size:26 final size:26
Alignment explanation
Indices: 32363414--32363465 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
32363404 TAATAAAAGA
32363414 ATGGTTTAATTACCATTTCATTTCTT
1 ATGGTTTAATTACCATTTCATTTCTT
32363440 ATGGTTTAATTACCATTTCATTTCTT
1 ATGGTTTAATTACCATTTCATTTCTT
32363466 TGGATAATTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.23, C:0.15, G:0.08, T:0.54
Consensus pattern (26 bp):
ATGGTTTAATTACCATTTCATTTCTT
Found at i:32366102 original size:16 final size:16
Alignment explanation
Indices: 32366081--32366112 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
32366071 AAATGACTGG
32366081 ATAATGTGAGCTTTTT
1 ATAATGTGAGCTTTTT
32366097 ATAATGTGAGCTTTTT
1 ATAATGTGAGCTTTTT
32366113 GATTGATCCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.19, T:0.50
Consensus pattern (16 bp):
ATAATGTGAGCTTTTT
Found at i:32370894 original size:28 final size:28
Alignment explanation
Indices: 32370857--32370913 Score: 73
Period size: 28 Copynumber: 2.0 Consensus size: 28
32370847 CCTGATTGGT
32370857 TTATTGATTT-TTATCTTT-TTTATTTTTA
1 TTATTGATTTATT-T-TTTGTTTATTTTTA
*
32370885 TTATTTATTTATTTTTTGTTTATTTTTA
1 TTATTGATTTATTTTTTGTTTATTTTTA
32370913 T
1 T
32370914 CCCAATTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
27 3 0.12
28 21 0.81
29 2 0.08
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.77
Consensus pattern (28 bp):
TTATTGATTTATTTTTTGTTTATTTTTA
Found at i:32370897 original size:17 final size:16
Alignment explanation
Indices: 32370856--32370909 Score: 58
Period size: 15 Copynumber: 3.4 Consensus size: 16
32370846 TCCTGATTGG
* *
32370856 TTTATTGATTTTTATC
1 TTTATTTATTTTTATA
32370872 TTT-TTTATTTTTATTA
1 TTTATTTATTTTTA-TA
*
32370888 TTTATTTATTTTT-TG
1 TTTATTTATTTTTATA
32370903 TTTATTT
1 TTTATTT
32370910 TTATCCCAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
15 17 0.52
16 7 0.21
17 9 0.27
ACGTcount: A:0.17, C:0.02, G:0.04, T:0.78
Consensus pattern (16 bp):
TTTATTTATTTTTATA
Found at i:32377764 original size:9 final size:9
Alignment explanation
Indices: 32377750--32377786 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
32377740 TATAGTTTGA
32377750 TATTCGAAT
1 TATTCGAAT
32377759 TATTCGAAT
1 TATTCGAAT
*
32377768 TATTCGAGT
1 TATTCGAAT
32377777 TATTCGAAT
1 TATTCGAAT
32377786 T
1 T
32377787 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:32380088 original size:27 final size:27
Alignment explanation
Indices: 32380058--32380172 Score: 128
Period size: 27 Copynumber: 4.3 Consensus size: 27
32380048 AAATTGAAAA
*
32380058 CTTTGTGGCAATCTATAAAATGAAAGC
1 CTTTGTGGCAATCTATGAAATGAAAGC
* * *
32380085 CTTTGTTGCAATCTATGAAATGGATGTC
1 CTTTGTGGCAATCTATGAAATGAAAG-C
*
32380113 C-TTGTGGAAATCTATGAAATGAAAGC
1 CTTTGTGGCAATCTATGAAATGAAAGC
* *
32380139 TTTTGTGGCATATCT-T-AAATAAAAGC
1 CTTTGTGGCA-ATCTATGAAATGAAAGC
32380165 CTTTGTGG
1 CTTTGTGG
32380173 AATTCTCTGA
Statistics
Matches: 73, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
26 17 0.23
27 50 0.68
28 6 0.08
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.35
Consensus pattern (27 bp):
CTTTGTGGCAATCTATGAAATGAAAGC
Found at i:32383851 original size:13 final size:13
Alignment explanation
Indices: 32383835--32383859 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32383825 CAAGTATTTA
32383835 ACCCAACCCAATT
1 ACCCAACCCAATT
32383848 ACCCAACCCAAT
1 ACCCAACCCAAT
32383860 CCAATCATAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:32387950 original size:31 final size:31
Alignment explanation
Indices: 32387906--32387980 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
32387896 TTGTCTCATA
* *
32387906 AACTTATCCAAAAGTAAT-TAG-TTGATACCTG
1 AACTTGTCTAAAAGT-ATCTAGTTTG-TACCTG
* *
32387937 AATTTGTCTAAAAGTATCTAGTTTGTACTTG
1 AACTTGTCTAAAAGTATCTAGTTTGTACCTG
32387968 AACTTGTCTAAAA
1 AACTTGTCTAAAA
32387981 AATTTTACTT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
30 2 0.05
31 32 0.86
32 3 0.08
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.37
Consensus pattern (31 bp):
AACTTGTCTAAAAGTATCTAGTTTGTACCTG
Found at i:32387997 original size:18 final size:17
Alignment explanation
Indices: 32387976--32388030 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
32387966 TGAACTTGTC
*
32387976 TAAAAAATTTTACTTTTT
1 TAAAAAATTATA-TTTTT
* *
32387994 TAAATTACTTATATTTTT
1 TAAA-AAATTATATTTTT
32388012 TAAAATAATTATATTTTT
1 TAAAA-AATTATATTTTT
32388030 T
1 T
32388031 TAATTTATGT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
18 25 0.83
19 5 0.17
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (17 bp):
TAAAAAATTATATTTTT
Found at i:32388017 original size:19 final size:17
Alignment explanation
Indices: 32387989--32388030 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
32387979 AAAATTTTAC
*
32387989 TTTTTTAAATTACTTATA
1 TTTTTTAAA-TAATTATA
32388007 TTTTTTAAAATAATTATA
1 TTTTTT-AAATAATTATA
32388025 TTTTTT
1 TTTTTT
32388031 TAATTTATGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 19 0.86
19 3 0.14
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
TTTTTTAAATAATTATA
Found at i:32399549 original size:12 final size:12
Alignment explanation
Indices: 32399527--32399573 Score: 76
Period size: 12 Copynumber: 3.9 Consensus size: 12
32399517 TCACGAACAA
*
32399527 GCTCTTTTATTG
1 GCTCGTTTATTG
*
32399539 ACTCGTTTATTG
1 GCTCGTTTATTG
32399551 GCTCGTTTATTG
1 GCTCGTTTATTG
32399563 GCTCGTTTATT
1 GCTCGTTTATT
32399574 TATTAATGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.11, C:0.17, G:0.19, T:0.53
Consensus pattern (12 bp):
GCTCGTTTATTG
Found at i:32401464 original size:26 final size:28
Alignment explanation
Indices: 32401406--32401469 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 28
32401396 GTGTCATATG
32401406 AATTAA-AATAGGATAAAATAAATAATA
1 AATTAATAATAGGATAAAATAAATAATA
*
32401433 AGTTAATAATA-G-TAAAAT-AATAATTA
1 AATTAATAATAGGATAAAATAAATAA-TA
32401459 AATTAAATAAT
1 AATT-AATAAT
32401470 TATGGTATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
25 5 0.16
26 11 0.34
27 12 0.38
28 4 0.12
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.31
Consensus pattern (28 bp):
AATTAATAATAGGATAAAATAAATAATA
Found at i:32403033 original size:13 final size:14
Alignment explanation
Indices: 32403008--32403043 Score: 56
Period size: 13 Copynumber: 2.6 Consensus size: 14
32402998 ATTAAATAGG
32403008 TATGTATATATATA
1 TATGTATATATATA
32403022 TATGTA-ATATATA
1 TATGTATATATATA
*
32403035 TTTGTATAT
1 TATGTATAT
32403044 TGTTATGTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 12 0.60
14 8 0.40
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (14 bp):
TATGTATATATATA
Found at i:32404746 original size:33 final size:34
Alignment explanation
Indices: 32404707--32404770 Score: 87
Period size: 33 Copynumber: 1.9 Consensus size: 34
32404697 ATCTTAACCA
*
32404707 CATTGAAACTAATTCATC-ACTTA-CCATATTGGT
1 CATTGAAA-TAATGCATCAACTTAGCCATATTGGT
*
32404740 CATTGAAATCATGCATCAACTTAGCCATATT
1 CATTGAAATAATGCATCAACTTAGCCATATT
32404771 AACACACATC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 7 0.26
33 13 0.48
34 7 0.26
ACGTcount: A:0.34, C:0.22, G:0.09, T:0.34
Consensus pattern (34 bp):
CATTGAAATAATGCATCAACTTAGCCATATTGGT
Found at i:32413654 original size:25 final size:23
Alignment explanation
Indices: 32413621--32413681 Score: 59
Period size: 25 Copynumber: 2.6 Consensus size: 23
32413611 TTTAAATAAC
*
32413621 AATATATAATAAAGATTAAAACCA
1 AATACATAATAAAGATTAAAA-CA
* **
32413645 TAATACATAATAGATTTTAAAACA
1 -AATACATAATAAAGATTAAAACA
*
32413669 AATACCTAATAAA
1 AATACATAATAAA
32413682 TCTATAATGA
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
23 11 0.37
24 2 0.07
25 17 0.57
ACGTcount: A:0.59, C:0.10, G:0.03, T:0.28
Consensus pattern (23 bp):
AATACATAATAAAGATTAAAACA
Found at i:32413872 original size:6 final size:6
Alignment explanation
Indices: 32413843--32413934 Score: 60
Period size: 6 Copynumber: 14.8 Consensus size: 6
32413833 AAAACAAATG
* * * *
32413843 AATATAT AAAAAT -ATAAT ACTAAT AATAAT CATAGAGGT AATAAT AATAAG
1 AATA-AT AATAAT AATAAT AATAAT AATAAT AATA-A--T AATAAT AATAAT
* * * * *
32413894 AATAAG GATAAT AATAAC AATAAT AATAAG AATATT AATAA
1 AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAA
32413935 ATTTAAAAAA
Statistics
Matches: 65, Mismatches: 16, Indels: 9
0.72 0.18 0.10
Matches are distributed among these distances:
5 4 0.06
6 52 0.80
7 4 0.06
8 1 0.02
9 4 0.06
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.28
Consensus pattern (6 bp):
AATAAT
Found at i:32413887 original size:21 final size:21
Alignment explanation
Indices: 32413864--32413919 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
32413854 ATATAATACT
**
32413864 AATAATAATCATAGAGG-TAAT
1 AATAATAAGAATA-AGGATAAT
32413885 AATAATAAGAATAAGGATAAT
1 AATAATAAGAATAAGGATAAT
* *
32413906 AATAACAATAATAA
1 AATAATAAGAATAA
32413920 TAAGAATATT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 3 0.10
21 27 0.90
ACGTcount: A:0.61, C:0.04, G:0.11, T:0.25
Consensus pattern (21 bp):
AATAATAAGAATAAGGATAAT
Found at i:32413951 original size:4 final size:4
Alignment explanation
Indices: 32413938--32413972 Score: 63
Period size: 4 Copynumber: 9.0 Consensus size: 4
32413928 TTAATAAATT
32413938 TAAA -AAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
32413973 AACAATGACT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.10
4 27 0.90
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
TAAA
Found at i:32418720 original size:86 final size:86
Alignment explanation
Indices: 32418575--32418745 Score: 263
Period size: 86 Copynumber: 2.0 Consensus size: 86
32418565 CTTTTGACAA
*
32418575 CCCAATGTGAGTCTAATCTTAAACTATTATATAGAATTGTTCAAACAGAAAAACATTTAATTTAG
1 CCCAATGTGAGTCTAATCTTAAACCATTATATAGAATTGTTCAAACAGAAAAACATTTAATTTAG
*
32418640 AGCATCATACCAATTGAGCAG
66 AGAATCATACCAATTGAGCAG
* * *
32418661 CCCAATGTGAGTCTAATTTTAAACCATTATATATAATTGTTCAAACA-ATAAAGCATTTAATTTA
1 CCCAATGTGAGTCTAATCTTAAACCATTATATAGAATTGTTCAAACAGA-AAAACATTTAATTTA
**
32418725 GAGAATCATGGCAATTGAGCA
65 GAGAATCATACCAATTGAGCA
32418746 TAATGTAAGG
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
85 1 0.01
86 76 0.99
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.32
Consensus pattern (86 bp):
CCCAATGTGAGTCTAATCTTAAACCATTATATAGAATTGTTCAAACAGAAAAACATTTAATTTAG
AGAATCATACCAATTGAGCAG
Found at i:32422811 original size:46 final size:46
Alignment explanation
Indices: 32422741--32422828 Score: 131
Period size: 46 Copynumber: 1.9 Consensus size: 46
32422731 AAAATTGTAG
* **
32422741 TGTGGGCCTTAGCCCGTTACAGTATCAGAATCAGAAATAGAATACA
1 TGTGGGCCTAAGCCCAATACAGTATCAGAATCAGAAATAGAATACA
* *
32422787 TGTGGGCCTAAGCCCAATATAGTATCAGAATCAGTAATAGAA
1 TGTGGGCCTAAGCCCAATACAGTATCAGAATCAGAAATAGAA
32422829 ATGTAACAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.24
Consensus pattern (46 bp):
TGTGGGCCTAAGCCCAATACAGTATCAGAATCAGAAATAGAATACA
Found at i:32423031 original size:22 final size:22
Alignment explanation
Indices: 32423001--32423052 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
32422991 AATGGCTAAG
* * *
32423001 AGCCGTAAATAGGATAGCTATA
1 AGCCATAAATAGAATAGCTACA
* *
32423023 AGCTATAAATAGAATGGCTACA
1 AGCCATAAATAGAATAGCTACA
32423045 AGCCATAA
1 AGCCATAA
32423053 GTACAGTAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.21
Consensus pattern (22 bp):
AGCCATAAATAGAATAGCTACA
Found at i:32423099 original size:32 final size:32
Alignment explanation
Indices: 32423044--32423185 Score: 112
Period size: 32 Copynumber: 4.5 Consensus size: 32
32423034 GAATGGCTAC
* *
32423044 AAGCCATAAGTA-CAGTAATATGATTAGCATA
1 AAGCCATCAGTAGCAGTAATATGATTAGCACA
* **
32423075 AAGCCATCAGTAGCAGTGATATGATCGGCACA
1 AAGCCATCAGTAGCAGTAATATGATTAGCACA
* * *
32423107 TAA-CCATCAGTAACGGTAATATGA-TAGGCAGA
1 -AAGCCATCAGTAGCAGTAATATGATTA-GCACA
* * * *
32423139 AAGCAATCAGTAGCAGTGATATGATCAGTACA
1 AAGCCATCAGTAGCAGTAATATGATTAGCACA
*
32423171 CAA-CCATTAGTAGCA
1 -AAGCCATCAGTAGCA
32423186 TCGCAGCAAA
Statistics
Matches: 85, Mismatches: 20, Indels: 11
0.73 0.17 0.09
Matches are distributed among these distances:
31 13 0.15
32 67 0.79
33 5 0.06
ACGTcount: A:0.40, C:0.18, G:0.20, T:0.22
Consensus pattern (32 bp):
AAGCCATCAGTAGCAGTAATATGATTAGCACA
Found at i:32423159 original size:64 final size:64
Alignment explanation
Indices: 32423058--32423182 Score: 180
Period size: 64 Copynumber: 2.0 Consensus size: 64
32423048 CATAAGTACA
* * * *
32423058 GTAATATGATTAGCATAAAGCCATCAGTAGCAGTGATATGATCGGCACATAACCATCAGTAACG
1 GTAATATGATTAGCAGAAAGCAATCAGTAGCAGTGATATGATCAGCACACAACCATCAGTAACG
* *
32423122 GTAATATGA-TAGGCAGAAAGCAATCAGTAGCAGTGATATGATCAGTACACAACCATTAGTA
1 GTAATATGATTA-GCAGAAAGCAATCAGTAGCAGTGATATGATCAGCACACAACCATCAGTA
32423183 GCATCGCAGC
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
63 2 0.04
64 52 0.96
ACGTcount: A:0.39, C:0.17, G:0.21, T:0.23
Consensus pattern (64 bp):
GTAATATGATTAGCAGAAAGCAATCAGTAGCAGTGATATGATCAGCACACAACCATCAGTAACG
Found at i:32423384 original size:24 final size:24
Alignment explanation
Indices: 32423352--32423409 Score: 89
Period size: 24 Copynumber: 2.4 Consensus size: 24
32423342 CCATGCTCAG
32423352 AATCAGTCATACAAATCACAAACA
1 AATCAGTCATACAAATCACAAACA
* *
32423376 AATCAGTCATACCAATCACAGACA
1 AATCAGTCATACAAATCACAAACA
*
32423400 AACCAGTCAT
1 AATCAGTCAT
32423410 TTACATCACG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.48, C:0.28, G:0.07, T:0.17
Consensus pattern (24 bp):
AATCAGTCATACAAATCACAAACA
Found at i:32423417 original size:24 final size:24
Alignment explanation
Indices: 32423390--32423438 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
32423380 AGTCATACCA
*
32423390 ATCACAGACAAACCAGTCATTTAC
1 ATCACAGACAAACCAATCATTTAC
* *
32423414 ATCACGGACAAATCAATCATTTAC
1 ATCACAGACAAACCAATCATTTAC
32423438 A
1 A
32423439 CTCAATGGGC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.43, C:0.27, G:0.08, T:0.22
Consensus pattern (24 bp):
ATCACAGACAAACCAATCATTTAC
Found at i:32423505 original size:27 final size:27
Alignment explanation
Indices: 32423455--32423705 Score: 265
Period size: 27 Copynumber: 9.4 Consensus size: 27
32423445 GGGCAAAATA
*
32423455 GTCA-TTTACCCTCCAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * *
32423481 GTCATTTAACCTTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * * **
32423508 GTCATTTAACCTTATAGGGGTATTTTG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * *
32423535 GTTATTTAACCCTA-TGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
32423561 GTTATTTTACCCTACAGGGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
* *
32423588 GTCATTTTACCCTATAGGGGAATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
** *
32423615 GTCATTTTACCCTACA-ATGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
32423641 GTCATTTTACCCTACAGGGGCACTACG
1 GTCATTTTACCCTACAGGGGCATTACG
32423668 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
32423695 ATCATTTTACC
1 GTCATTTTACC
32423706 TATCGACGGT
Statistics
Matches: 192, Mismatches: 30, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
26 49 0.26
27 143 0.74
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:32423554 original size:53 final size:54
Alignment explanation
Indices: 32423455--32423701 Score: 241
Period size: 53 Copynumber: 4.6 Consensus size: 54
32423445 GGGCAAAATA
* * *
32423455 GTCATTT-ACCCTCCAGGGGCATTACGGTCATTTAACCTTATAGGGGTATTACG
1 GTCATTTAACCCTACAGGGGCATTACAGTCATTTAACCCTATAGGGGTATTACG
* * * *** *
32423508 GTCATTTAACCTTATAGGGGTATTTTGGTTATTTAACCCTAT-GGGGTATTACG
1 GTCATTTAACCCTACAGGGGCATTACAGTCATTTAACCCTATAGGGGTATTACG
* * * *
32423561 GTTATTTTACCCTACAGGGGCATTACAGTCATTTTACCCTATAGGGGAATTACG
1 GTCATTTAACCCTACAGGGGCATTACAGTCATTTAACCCTATAGGGGTATTACG
* ** * * * * * *
32423615 GTCATTTTACCCTACA-ATGTATTACGGTCATTTTACCCTACAGGGGCACTACG
1 GTCATTTAACCCTACAGGGGCATTACAGTCATTTAACCCTATAGGGGTATTACG
*
32423668 GTCATTTTACCCTACAGGGGCATTAC-GATCATTT
1 GTCATTTAACCCTACAGGGGCATTACAG-TCATTT
32423702 TACCTATCGA
Statistics
Matches: 160, Mismatches: 30, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
53 97 0.61
54 63 0.39
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (54 bp):
GTCATTTAACCCTACAGGGGCATTACAGTCATTTAACCCTATAGGGGTATTACG
Found at i:32423559 original size:80 final size:80
Alignment explanation
Indices: 32423455--32423701 Score: 262
Period size: 80 Copynumber: 3.1 Consensus size: 80
32423445 GGGCAAAATA
* * * * * *
32423455 GTCATTT-ACCCTCCAGGGGCATTACGGTCATTTAACCTTATAGGGGTATTACGGTCATTTAACC
1 GTCATTTAACCCTAC-GGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTAACC
* * **
32423519 TTATAGGGGTATTTTG
65 CTATAGGGGAATTACG
* * * * *
32423535 GTTATTTAACCCTATGGGGTATTACGGTTATTTTACCCTACAGGGGCATTACAGTCATTTTACCC
1 GTCATTTAACCCTACGGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTAACCC
32423600 TATAGGGGAATTACG
66 TATAGGGGAATTACG
* *** * *
32423615 GTCATTTTACCCTACAATGTATTACGGTCATTTTACCCTACAGGGGCACTACGGTCATTTTACCC
1 GTCATTTAACCCTACGGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTAACCC
* *
32423680 TACAGGGGCATTACG
66 TATAGGGGAATTACG
*
32423695 ATCATTT
1 GTCATTT
32423702 TACCTATCGA
Statistics
Matches: 139, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
80 134 0.96
81 5 0.04
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (80 bp):
GTCATTTAACCCTACGGGGTATTACGGTCATTTTACCCTACAGGGGCATTACGGTCATTTAACCC
TATAGGGGAATTACG
Found at i:32423592 original size:107 final size:106
Alignment explanation
Indices: 32423455--32423706 Score: 301
Period size: 107 Copynumber: 2.4 Consensus size: 106
32423445 GGGCAAAATA
* * *
32423455 GTCA-TTTACCCTCCAGGGGCATTACGGTCATTTAACCTTATAGGGGTATTACGGTCATTTAACC
1 GTCATTTTACCCTACAGGGGCATTAC-GTCATTTTACCTTATAGGGGAATTACGGTCATTTAACC
* * * ** * * * *
32423519 TTATAGGGGTATTTTGGTTATTTAACCCTA-TGGGGTATTACG
65 CTACA-AGGTATTACGGTCATTTAACCCTACAGGGGCACTACG
* * *
32423561 GTTATTTTACCCTACAGGGGCATTACAGTCATTTTACCCTATAGGGGAATTACGGTCATTTTACC
1 GTCATTTTACCCTACAGGGGCATTAC-GTCATTTTACCTTATAGGGGAATTACGGTCATTTAACC
* *
32423626 CTACAATGTATTACGGTCATTTTACCCTACAGGGGCACTACG
65 CTACAAGGTATTACGGTCATTTAACCCTACAGGGGCACTACG
32423668 GTCATTTTACCCTACAGGGGCATTACGATCATTTTACCT
1 GTCATTTTACCCTACAGGGGCATTACG-TCATTTTACCT
32423707 ATCGACGGTA
Statistics
Matches: 123, Mismatches: 20, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
106 22 0.18
107 101 0.82
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (106 bp):
GTCATTTTACCCTACAGGGGCATTACGTCATTTTACCTTATAGGGGAATTACGGTCATTTAACCC
TACAAGGTATTACGGTCATTTAACCCTACAGGGGCACTACG
Found at i:32423728 original size:27 final size:27
Alignment explanation
Indices: 32423693--32423839 Score: 206
Period size: 27 Copynumber: 5.4 Consensus size: 27
32423683 AGGGGCATTA
* * *
32423693 CGATCATTTTACCTATCGACGGTATTT
1 CGATAATTTTACCCATCGAGGGTATTT
*
32423720 C-ATTAATTTTACCCATTGAGGGTATTT
1 CGA-TAATTTTACCCATCGAGGGTATTT
32423747 CGATAATTTTACCCATCGAGGGTATTT
1 CGATAATTTTACCCATCGAGGGTATTT
*
32423774 CGATAATTTTACCCATCGAAGGTATTT
1 CGATAATTTTACCCATCGAGGGTATTT
* * *
32423801 CGGTAATTTTACCCTTCGAGGGCATTT
1 CGATAATTTTACCCATCGAGGGTATTT
32423828 CGATAATTTTAC
1 CGATAATTTTAC
32423840 GGCCCAATCC
Statistics
Matches: 107, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
26 1 0.01
27 105 0.98
28 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.39
Consensus pattern (27 bp):
CGATAATTTTACCCATCGAGGGTATTT
Found at i:32423729 original size:54 final size:54
Alignment explanation
Indices: 32423671--32423839 Score: 164
Period size: 54 Copynumber: 3.1 Consensus size: 54
32423661 CACTACGGTC
* *
32423671 ATTTTACCCTACAG-GGGCATTACGATCATTTTACCTATCGACGGTATTTC-ATTA
1 ATTTTACCC-ACAGAGGGCATTACGATAATTTTACCCATCGACGGTATTTCGA-TA
** * * *
32423725 ATTTTACCCATTGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTCGATA
1 ATTTTACCCACAGAGGGCATTACGATAATTTTACCCATCGACGGTATTTCGATA
* * * * * * *
32423779 ATTTTACCCATC-GAAGGTATTTCGGTAATTTTACCCTTCGAGGGCATTTCGATA
1 ATTTTACCCA-CAGAGGGCATTACGATAATTTTACCCATCGACGGTATTTCGATA
32423833 ATTTTAC
1 ATTTTAC
32423840 GGCCCAATCC
Statistics
Matches: 100, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
53 2 0.02
54 97 0.97
55 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.17, T:0.38
Consensus pattern (54 bp):
ATTTTACCCACAGAGGGCATTACGATAATTTTACCCATCGACGGTATTTCGATA
Found at i:32425781 original size:21 final size:21
Alignment explanation
Indices: 32425723--32425775 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
32425713 TTGTTTTCCA
*
32425723 AAACCACTTGACTTTAGGGGT
1 AAACCACTTGACTTTAAGGGT
*
32425744 AAACTACTTGACTTTAAGGGT
1 AAACCACTTGACTTTAAGGGT
32425765 AAACCACTTGA
1 AAACCACTTGA
32425776 ACTTAACTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (21 bp):
AAACCACTTGACTTTAAGGGT
Found at i:32425960 original size:15 final size:15
Alignment explanation
Indices: 32425936--32425969 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
32425926 GGGCTATTAT
*
32425936 ATATAAGGTTCGCTC
1 ATATAAGGTTCGCAC
*
32425951 ATATAGGGTTCGCAC
1 ATATAAGGTTCGCAC
32425966 ATAT
1 ATAT
32425970 TAAATCACAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (15 bp):
ATATAAGGTTCGCAC
Found at i:32426223 original size:3 final size:3
Alignment explanation
Indices: 32426215--32426269 Score: 101
Period size: 3 Copynumber: 18.0 Consensus size: 3
32426205 TTTCAACAAT
32426215 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
32426263 GAGA GAA
1 GA-A GAA
32426270 TCTTGAGAGT
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 48 0.94
4 3 0.06
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:32429183 original size:150 final size:150
Alignment explanation
Indices: 32429013--32429436 Score: 823
Period size: 150 Copynumber: 2.8 Consensus size: 150
32429003 ATTTTTTGTA
32429013 TTTTTTTCCGGATTTTATTACTTTTAAAAAATTTACTATTTTTAATTTTTTAATTTTAAATTATT
1 TTTTTTTCCGGATTTTATTACTTTTAAAAAATTTACTATTTTTAATTTTTTAATTTTAAATTATT
32429078 TTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAAAACCCTTA
66 TTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAAAACCCTTA
32429143 TTTTGGCCCTATGTTCGTAT
131 TTTTGGCCCTATGTTCGTAT
*
32429163 TTTTTTTCCGGATTTTATTACTTTTAAAAAATATACTATTTTTTAA-TTTTTAATTTTAAATTAT
1 TTTTTTTCCGGATTTTATTACTTTTAAAAAATTTACTA-TTTTTAATTTTTTAATTTTAAATTAT
32429227 TTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAAAACCCTT
65 TTTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAAAACCCTT
32429292 ATTTTGGCCCTATGTTCGTAT
130 ATTTTGGCCCTATGTTCGTAT
32429313 TTTTTTTCCGGATTTTATTACTTTTAAAAAATTTACTATTTTTAATTTTTTAATTTTAAATTATT
1 TTTTTTTCCGGATTTTATTACTTTTAAAAAATTTACTATTTTTAATTTTTTAATTTTAAATTATT
32429378 TTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAAAA
66 TTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAAAA
32429437 NNNNNNNNNN
Statistics
Matches: 270, Mismatches: 2, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
149 7 0.03
150 256 0.95
151 7 0.03
ACGTcount: A:0.32, C:0.07, G:0.08, T:0.54
Consensus pattern (150 bp):
TTTTTTTCCGGATTTTATTACTTTTAAAAAATTTACTATTTTTAATTTTTTAATTTTAAATTATT
TTAGTACATTATATTTGAAATGTATTAATTTAGTGTGTTTTTTAAATAAATTTAAAAAACCCTTA
TTTTGGCCCTATGTTCGTAT
Found at i:32430391 original size:151 final size:152
Alignment explanation
Indices: 32430226--32431042 Score: 1278
Period size: 151 Copynumber: 5.4 Consensus size: 152
32430216 CTCACACACC
* * *
32430226 ATAATGTACTAAAATAATGTAAAA-TAATAAAATTAGAAAATAATATATTTTTTAAAAGTAATAA
1 ATAATGTACTAAAATAATATAAAATTAA-AAAATTAAAAAATAGTATATTTTTTAAAAGTAATAA
* * * *
32430290 AATCAGAG-AAAAAATACGAACAAATGGCCGAAATAAGGATTTTTTTTAATTTATTTAAAAAACA
65 AATCTGGGAAAAAAATACGAACAAAAGGCCGAAATAAGGATTTTTTTAAATTTATTTAAAAAACA
32430354 CACTAAATTAATACATTTCAAAT
130 CACTAAATTAATACATTTCAAAT
32430377 ATAATGTACTAAAATAATAT-AAATTAAAAAATTAAAAAATAGTATATTTTTTAAAAGTAATAAA
1 ATAATGTACTAAAATAATATAAAATTAAAAAATTAAAAAATAGTATATTTTTTAAAAGTAATAAA
*
32430441 ATCTGGGAAAAAAATACAAACAAAAGGCCGAAATAAGGA-TTTTTTAAATTTATTTAAAAAACAC
66 ATCTGGGAAAAAAATACGAACAAAAGGCCGAAATAAGGATTTTTTTAAATTTATTTAAAAAACAC
32430505 ACTAAATTAATACATTTCAAAT
131 ACTAAATTAATACATTTCAAAT
* * *
32430527 ATAATGTACTAAAATAATGTAAAATTAAAAAATTAGAAAATAGTATA-TTCTTAAAAGTAATAAA
1 ATAATGTACTAAAATAATATAAAATTAAAAAATTAAAAAATAGTATATTTTTTAAAAGTAATAAA
* * * * * *
32430591 AT-TCGGGTAAAAAATACGAACATAGGGCCAAAATAAGGGTTTTTTTAAATTTATTTTAAAAACA
66 ATCT-GGGAAAAAAATACGAACAAAAGGCCGAAATAAGGATTTTTTTAAATTTATTTAAAAAACA
32430655 CACTAAATTAATACATTTCAAAT
130 CACTAAATTAATACATTTCAAAT
* *
32430678 ATAATGTACTAAAATAATATAAAATTTAAAAATTTAAAAAATAGTATATGTTTTAAAAGTAATAA
1 ATAATGTACTAAAATAATATAAAA-TTAAAAAATTAAAAAATAGTATATTTTTTAAAAGTAATAA
* * * *
32430743 AATCCGGGAAAAAAATACGAACATAGGGCCAAAATAAGG-TTTTTTTAAATTTATTT-AAAAACA
65 AATCTGGGAAAAAAATACGAACAAAAGGCCGAAATAAGGATTTTTTTAAATTTATTTAAAAAACA
32430806 CACTAAATTAATACATTTCAAAT
130 CACTAAATTAATACATTTCAAAT
32430829 ATAATGTACTAAAATAATAT-AAATTAAAAAATTAAAAAATAGTATATTTTTTAAAAGTAATAAA
1 ATAATGTACTAAAATAATATAAAATTAAAAAATTAAAAAATAGTATATTTTTTAAAAGTAATAAA
*
32430893 ATCTGGGAAAAAAATACAAACAAAAGGCCGAAATAAGGA-TTTTTTAAATTTATTTAAAAAACAC
66 ATCTGGGAAAAAAATACGAACAAAAGGCCGAAATAAGGATTTTTTTAAATTTATTTAAAAAACAC
32430957 ACTAAATTAATACATTTCAAAT
131 ACTAAATTAATACATTTCAAAT
* * *
32430979 ATAATGTACTAAAATAATGTAAAATTAAAAAATTAGAAAATAATATATATTTTT-AAAGTAATAA
1 ATAATGTACTAAAATAATATAAAATTAAAAAATTAAAAAATAGTATAT-TTTTTAAAAGTAATAA
32431043 TTTTTTTGTA
Statistics
Matches: 619, Mismatches: 35, Indels: 24
0.91 0.05 0.04
Matches are distributed among these distances:
149 89 0.14
150 207 0.33
151 230 0.37
152 43 0.07
153 50 0.08
ACGTcount: A:0.53, C:0.07, G:0.08, T:0.32
Consensus pattern (152 bp):
ATAATGTACTAAAATAATATAAAATTAAAAAATTAAAAAATAGTATATTTTTTAAAAGTAATAAA
ATCTGGGAAAAAAATACGAACAAAAGGCCGAAATAAGGATTTTTTTAAATTTATTTAAAAAACAC
ACTAAATTAATACATTTCAAAT
Found at i:32430855 original size:301 final size:301
Alignment explanation
Indices: 32430226--32431042 Score: 1284
Period size: 301 Copynumber: 2.7 Consensus size: 301
32430216 CTCACACACC
* *
32430226 ATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTTTAAAAGTAATAAA
1 ATAATGTACTAAAATAATGTAAATTAA-AAAATTAGAAAATAGTATATTTTTTAAAAGTAATAAA
* * * *
32430291 ATCAGAGAAAAAATACGAACAAATGGCCGAAATAAGGATTTTTTTTAATTTATTTAAAAAACACA
65 ATCAGGGAAAAAATACGAACAAAAGGCCGAAATAAGGGTTTTTTTAAATTTATTTAAAAAACACA
32430356 CTAAATTAATACATTTCAAATATAATGTACTAAAATAATAT-AAATTAAAAAATTAAAAAATAGT
130 CTAAATTAATACATTTCAAATATAATGTACTAAAATAATATAAAATTAAAAAATTAAAAAATAGT
* * *
32430420 ATATTTTTTAAAAGTAATAAAATCTGGGAAAAAAATACAAACAAAAGGCCGAAATAAGGATTTTT
195 ATATATTTTAAAAGTAATAAAATCCGGGAAAAAAATACAAACAAAAGGCCAAAATAAGGATTTTT
32430485 TAAATTTATTTAAAAAACACACTAAATTAATACATTTCAAAT
260 TAAATTTATTTAAAAAACACACTAAATTAATACATTTCAAAT
*
32430527 ATAATGTACTAAAATAATGTAAAATTAAAAAATTAGAAAATAGTATA-TTCTTAAAAGTAATAAA
1 ATAATGTACTAAAATAATGT-AAATTAAAAAATTAGAAAATAGTATATTTTTTAAAAGTAATAAA
* * * *
32430591 ATTC-GGGTAAAAAATACGAACATAGGGCCAAAATAAGGGTTTTTTTAAATTTATTTTAAAAACA
65 A-TCAGGG-AAAAAATACGAACAAAAGGCCGAAATAAGGGTTTTTTTAAATTTATTTAAAAAACA
*
32430655 CACTAAATTAATACATTTCAAATATAATGTACTAAAATAATATAAAATTTAAAAATTTAAAAAAT
128 CACTAAATTAATACATTTCAAATATAATGTACTAAAATAATATAAAA-TTAAAAAATTAAAAAAT
* * * * *
32430720 AGTATATGTTTTAAAAGTAATAAAATCCGGGAAAAAAATACGAACATAGGGCCAAAATAAGGTTT
192 AGTATATATTTTAAAAGTAATAAAATCCGGGAAAAAAATACAAACAAAAGGCCAAAATAAGGATT
32430785 TTTTAAATTTATTT-AAAAACACACTAAATTAATACATTTCAAAT
257 TTTTAAATTTATTTAAAAAACACACTAAATTAATACATTTCAAAT
* *
32430829 ATAATGTACTAAAATAATATAAATTAAAAAATTAAAAAATAGTATATTTTTTAAAAGTAATAAAA
1 ATAATGTACTAAAATAATGTAAATTAAAAAATTAGAAAATAGTATATTTTTTAAAAGTAATAAAA
* * *
32430894 TCTGGGAAAAAAATACAAACAAAAGGCCGAAATAA-GGATTTTTTAAATTTATTTAAAAAACACA
66 TCAGGG-AAAAAATACGAACAAAAGGCCGAAATAAGGGTTTTTTTAAATTTATTTAAAAAACACA
* * *
32430958 CTAAATTAATACATTTCAAATATAATGTACTAAAATAATGTAAAATTAAAAAATTAGAAAATAAT
130 CTAAATTAATACATTTCAAATATAATGTACTAAAATAATATAAAATTAAAAAATTAAAAAATAGT
*
32431023 ATATATTTTTAAAGTAATAA
195 ATATATTTTAAAAGTAATAA
32431043 TTTTTTTGTA
Statistics
Matches: 475, Mismatches: 34, Indels: 15
0.91 0.06 0.03
Matches are distributed among these distances:
300 54 0.11
301 231 0.49
302 102 0.21
303 88 0.19
ACGTcount: A:0.53, C:0.07, G:0.08, T:0.32
Consensus pattern (301 bp):
ATAATGTACTAAAATAATGTAAATTAAAAAATTAGAAAATAGTATATTTTTTAAAAGTAATAAAA
TCAGGGAAAAAATACGAACAAAAGGCCGAAATAAGGGTTTTTTTAAATTTATTTAAAAAACACAC
TAAATTAATACATTTCAAATATAATGTACTAAAATAATATAAAATTAAAAAATTAAAAAATAGTA
TATATTTTAAAAGTAATAAAATCCGGGAAAAAAATACAAACAAAAGGCCAAAATAAGGATTTTTT
AAATTTATTTAAAAAACACACTAAATTAATACATTTCAAAT
Found at i:32431075 original size:14 final size:14
Alignment explanation
Indices: 32431036--32431085 Score: 52
Period size: 14 Copynumber: 3.7 Consensus size: 14
32431026 TATTTTTAAA
*
32431036 GTAATAATTTTTTT
1 GTAATATTTTTTTT
*
32431050 GT-ATA-TTATTTT
1 GTAATATTTTTTTT
32431062 GATAAT-TTTTTTTT
1 G-TAATATTTTTTTT
32431076 GTAATATTTT
1 GTAATATTTT
32431086 AGTAAAAACC
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
12 7 0.23
13 8 0.27
14 15 0.50
ACGTcount: A:0.26, C:0.00, G:0.08, T:0.66
Consensus pattern (14 bp):
GTAATATTTTTTTT
Found at i:32431896 original size:151 final size:150
Alignment explanation
Indices: 32431597--32432186 Score: 896
Period size: 150 Copynumber: 4.0 Consensus size: 150
32431587 TACTGCGTTA
* * *
32431597 GCCGAAATAAGGATTTTTTTTAATTTATTTAAAAAACACATTAAATTAATACATTTCAAATATAA
1 GCCGAAATAAGGGTTTTTTTAAATTTATTTAAAAAACACACTAAATTAATACATTTCAAATATAA
*
32431662 TGTACTAAAATAATGTAAAATTAAAAATTAAAAAATAGTATATTTTTTAAAAGTAATAAAA-TCA
66 TGTACTAAAATAATGTAAAATAAAAAATTAAAAAATAGTATATTTTTTAAAAGTAATAAAATTCA
*
32431726 GGGAAAAAATACGAACATAGG
131 -GAAAAAAATACGAACATAGG
32431747 GCCGAAATAAGGGTTTTTTTAAATTTATTTAAAAAACACACTAAATTAATACATTTCAAATATAA
1 GCCGAAATAAGGGTTTTTTTAAATTTATTTAAAAAACACACTAAATTAATACATTTCAAATATAA
* * *
32431812 TGTACTAAAATAATGTAAAATAAAAAAATTAGACAATAGTATATTTTTTAAAAGTAATAAAATTT
66 TGTACTAAAATAATGTAAAAT-AAAAAATTAAAAAATAGTATATTTTTTAAAAGTAATAAAATTC
32431877 AGAAAAAAATACGAACATAGG
130 AGAAAAAAATACGAACATAGG
* * * *
32431898 GCCGAAACAAGGGTTTTTTT-AATTTATTTTAAAAACAAACCAAATTAATACATTTCAAATATAA
1 GCCGAAATAAGGGTTTTTTTAAATTTATTTAAAAAACACACTAAATTAATACATTTCAAATATAA
32431962 TGTACTAAAATAATG-----T--AAAA-TAAAAAATAGTATATTTTTTAAAAAGTAATAAAATTC
66 TGTACTAAAATAATGTAAAATAAAAAATTAAAAAATAGTATATTTTTT-AAAAGTAATAAAATTC
*
32432019 GGGAAAAAAATACGAACATAGG
130 -AGAAAAAAATACGAACATAGG
*
32432041 GCCGCAATAAGGG-TTTTTTAAATTTATTTAAAAAACACACTAAATTAATACATTTCAAATATAA
1 GCCGAAATAAGGGTTTTTTTAAATTTATTTAAAAAACACACTAAATTAATACATTTCAAATATAA
* * *
32432105 TGTACTAAAATAATGCAAAATTAAAAAATTAAAAAATATTATATTTTTTAAAAGTAATAAAATCC
66 TGTACTAAAATAATGTAAAA-TAAAAAATTAAAAAATAGTATATTTTTTAAAAGTAATAAAATTC
*
32432170 GGAAAAAAATACGAACA
130 AGAAAAAAATACGAACA
32432187 AAGGATAAAA
Statistics
Matches: 403, Mismatches: 23, Indels: 28
0.89 0.05 0.06
Matches are distributed among these distances:
141 18 0.04
142 25 0.06
143 87 0.22
145 1 0.00
149 1 0.00
150 156 0.39
151 94 0.23
152 21 0.05
ACGTcount: A:0.51, C:0.08, G:0.09, T:0.32
Consensus pattern (150 bp):
GCCGAAATAAGGGTTTTTTTAAATTTATTTAAAAAACACACTAAATTAATACATTTCAAATATAA
TGTACTAAAATAATGTAAAATAAAAAATTAAAAAATAGTATATTTTTTAAAAGTAATAAAATTCA
GAAAAAAATACGAACATAGG
Found at i:32432999 original size:11 final size:11
Alignment explanation
Indices: 32432983--32433027 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
32432973 ATTAATCCTT
32432983 TCTCAATTTCC
1 TCTCAATTTCC
**
32432994 TCTCAATTTTT
1 TCTCAATTTCC
* *
32433005 TCTCAAATTAC
1 TCTCAATTTCC
32433016 TCTCAATTTCC
1 TCTCAATTTCC
32433027 T
1 T
32433028 TCCAAATTTC
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.22, C:0.29, G:0.00, T:0.49
Consensus pattern (11 bp):
TCTCAATTTCC
Found at i:32433006 original size:22 final size:22
Alignment explanation
Indices: 32432981--32433043 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
32432971 AAATTAATCC
* *
32432981 TTTCTCAATTTCCTCTCAATTT
1 TTTCTCAAATTACTCTCAATTT
32433003 TTTCTCAAATTACTCTCAATTT
1 TTTCTCAAATTACTCTCAATTT
* *
32433025 CCTTC-CAAATTTCTCTCAA
1 -TTTCTCAAATTACTCTCAA
32433044 ATCCATATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
22 33 0.92
23 3 0.08
ACGTcount: A:0.24, C:0.29, G:0.00, T:0.48
Consensus pattern (22 bp):
TTTCTCAAATTACTCTCAATTT
Found at i:32433020 original size:33 final size:33
Alignment explanation
Indices: 32432983--32433045 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
32432973 ATTAATCCTT
* *
32432983 TCTCAATTTCC-TCTCAATTTTTTCTCAAATTAC
1 TCTCAATTTCCTTC-CAAATTTCTCTCAAATTAC
32433016 TCTCAATTTCCTTCCAAATTTCTCTCAAAT
1 TCTCAATTTCCTTCCAAATTTCTCTCAAAT
32433046 CCATATTTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
33 25 0.93
34 2 0.07
ACGTcount: A:0.25, C:0.29, G:0.00, T:0.46
Consensus pattern (33 bp):
TCTCAATTTCCTTCCAAATTTCTCTCAAATTAC
Found at i:32433061 original size:51 final size:51
Alignment explanation
Indices: 32433005--32433104 Score: 137
Period size: 51 Copynumber: 2.0 Consensus size: 51
32432995 CTCAATTTTT
32433005 TCTCAAATTACTCTCAATTTCCTTCCAAATTTCTCTCAAATCCATATTTAA
1 TCTCAAATTACTCTCAATTTCCTTCCAAATTTCTCTCAAATCCATATTTAA
* * * ** * *
32433056 TCTCAATTTGCTCTCATTTTCCTTTTAAATTTCTCTTAAATCCCTATTT
1 TCTCAAATTACTCTCAATTTCCTTCCAAATTTCTCTCAAATCCATATTT
32433105 TTAATTATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
51 42 1.00
ACGTcount: A:0.26, C:0.26, G:0.01, T:0.47
Consensus pattern (51 bp):
TCTCAAATTACTCTCAATTTCCTTCCAAATTTCTCTCAAATCCATATTTAA
Found at i:32435416 original size:49 final size:49
Alignment explanation
Indices: 32435363--32435480 Score: 227
Period size: 49 Copynumber: 2.4 Consensus size: 49
32435353 GTTTATATTA
32435363 ATGTAATAAAATACAAAATAGTTTAATTTGAATATTTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTAATTTGAATATTTTGATATTATTTG
*
32435412 ATGTAATAAAATACAAAATAGTTTATTTTGAATATTTTGATATTATTTG
1 ATGTAATAAAATACAAAATAGTTTAATTTGAATATTTTGATATTATTTG
32435461 ATGTAATAAAATACAAAATA
1 ATGTAATAAAATACAAAATA
32435481 ATTAATATTC
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 68 1.00
ACGTcount: A:0.46, C:0.03, G:0.09, T:0.42
Consensus pattern (49 bp):
ATGTAATAAAATACAAAATAGTTTAATTTGAATATTTTGATATTATTTG
Found at i:32440908 original size:44 final size:45
Alignment explanation
Indices: 32440786--32440911 Score: 112
Period size: 44 Copynumber: 2.8 Consensus size: 45
32440776 AAGACTAGTG
* * **
32440786 TCTTCGATCTACTTCGCTTCCAGTACAGGAAGACAAGATTTGCCA
1 TCTTCGATCTACTTCGCTACCAATACAGGAAGACAAGAGCTGCCA
* * * *** * **
32440831 TTTTCAACCTACTTCGCTACTGCT-CAGGGAGACAAG-GCTGGTA
1 TCTTCGATCTACTTCGCTACCAATACAGGAAGACAAGAGCTGCCA
*
32440874 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGA
1 TCTTCGATCTACTTCGCTACCAATACAGGAAGACAAGA
32440912 TCTGTTATTT
Statistics
Matches: 59, Mismatches: 20, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
43 20 0.34
44 22 0.37
45 17 0.29
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (45 bp):
TCTTCGATCTACTTCGCTACCAATACAGGAAGACAAGAGCTGCCA
Found at i:32440942 original size:88 final size:88
Alignment explanation
Indices: 32440786--32440958 Score: 265
Period size: 88 Copynumber: 2.0 Consensus size: 88
32440776 AAGACTAGTG
* * * * *
32440786 TCTTCGATCTACTTCGCTTCCAGTACAGGAAGACAAGATTTGCCATTTTCAACCTACTTCGCTAC
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCCATTTTCAACCTACTCCACTAC
32440851 TGCTCAGGGAGACAAGGCTGGTA
66 TGCTCAGGGAGACAAGGCTGGTA
** *
32440874 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGTTATTTTCAACCTACTCCACTGC
1 TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCCATTTTCAACCTACTCCACTAC
*
32440939 TGCTCAGGGAGATAAGGCTG
66 TGCTCAGGGAGACAAGGCTG
32440959 AAGTTTCACC
Statistics
Matches: 76, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
88 76 1.00
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.28
Consensus pattern (88 bp):
TCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCCATTTTCAACCTACTCCACTAC
TGCTCAGGGAGACAAGGCTGGTA
Found at i:32442212 original size:16 final size:14
Alignment explanation
Indices: 32442194--32442249 Score: 69
Period size: 14 Copynumber: 3.9 Consensus size: 14
32442184 TTTTTACTCT
32442194 TTTCATTTTTTTCA
1 TTTCATTTTTTTCA
*
32442208 TTT-TTATTTTTTCA
1 TTTCAT-TTTTTTCA
32442222 TTTCATTTTCATTTCA
1 TTTCATTTT--TTTCA
32442238 TTTCATTTTTTT
1 TTTCATTTTTTT
32442250 TACGACTCAA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
13 1 0.03
14 20 0.56
15 1 0.03
16 14 0.39
ACGTcount: A:0.14, C:0.12, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTCATTTTTTTCA
Found at i:32442232 original size:11 final size:11
Alignment explanation
Indices: 32442216--32442245 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
32442206 CATTTTTATT
32442216 TTTTCATTTCA
1 TTTTCATTTCA
32442227 TTTTCATTTCA
1 TTTTCATTTCA
32442238 -TTTCATTT
1 TTTTCATTT
32442246 TTTTTACGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.42
11 11 0.58
ACGTcount: A:0.17, C:0.17, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTTCATTTCA
Found at i:32442723 original size:21 final size:20
Alignment explanation
Indices: 32442697--32442743 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
32442687 CCGGTAGAGG
* *
32442697 TTTTTGTTTTTCGTTTTTTGT
1 TTTTTGTTCTTC-TTTTTCGT
32442718 TTTTTGTTCTTCTTTTTCGT
1 TTTTTGTTCTTCTTTTTCGT
32442738 TCTTTT
1 T-TTTT
32442744 TTCCTTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.00, C:0.11, G:0.11, T:0.79
Consensus pattern (20 bp):
TTTTTGTTCTTCTTTTTCGT
Found at i:32442753 original size:20 final size:19
Alignment explanation
Indices: 32442703--32442765 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 19
32442693 GAGGTTTTTG
*
32442703 TTTTTCGTTTTTT-GTT-T
1 TTTTTCTTTTTTTCGTTCT
32442720 TTTGTTCTTCTTTTTCGTTCT
1 TTT-TTCTT-TTTTTCGTTCT
* *
32442741 TTTTTCCTTTTTTCCTTTCT
1 TTTTT-CTTTTTTTCGTTCT
32442761 TTTTT
1 TTTTT
32442766 TTTGAAAGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
17 3 0.08
18 4 0.11
19 5 0.13
20 19 0.50
21 7 0.18
ACGTcount: A:0.00, C:0.16, G:0.06, T:0.78
Consensus pattern (19 bp):
TTTTTCTTTTTTTCGTTCT
Found at i:32450984 original size:22 final size:22
Alignment explanation
Indices: 32450943--32450984 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
32450933 TAATTAGATA
*
32450943 AATTAATAAATTTAAGTTTTTT
1 AATTAATAAATATAAGTTTTTT
32450965 AATTAAATAAATATAA-TTTT
1 AATT-AATAAATATAAGTTTT
32450985 ATTTTAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (22 bp):
AATTAATAAATATAAGTTTTTT
Found at i:32452090 original size:119 final size:120
Alignment explanation
Indices: 32451931--32452170 Score: 473
Period size: 119 Copynumber: 2.0 Consensus size: 120
32451921 AAATATATAA
32451931 TTAAATTGAAATTTAAAATATAAATAAGTGATTTTTTTAATAAAATGATTATTTGCAATGATATT
1 TTAAATTGAAATTTAAAATATAAATAAGTGATTTTTTTAATAAAATGATTATTTGCAATGATATT
32451996 TATTTATGAAAACTTAAAAAGTCTTAAATATTTTGTTATTATTCTCATTTAGATT
66 TATTTATGAAAACTTAAAAAGTCTTAAATATTTTGTTATTATTCTCATTTAGATT
32452051 TTAAATTG-AATTTAAAATATAAATAAGTGATTTTTTTAATAAAATGATTATTTGCAATGATATT
1 TTAAATTGAAATTTAAAATATAAATAAGTGATTTTTTTAATAAAATGATTATTTGCAATGATATT
32452115 TATTTATGAAAACTTAAAAAGTCTTAAATATTTTGTTATTATTCTCATTTAGATT
66 TATTTATGAAAACTTAAAAAGTCTTAAATATTTTGTTATTATTCTCATTTAGATT
32452170 T
1 T
32452171 GGATTTTTGT
Statistics
Matches: 120, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
119 112 0.93
120 8 0.07
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.47
Consensus pattern (120 bp):
TTAAATTGAAATTTAAAATATAAATAAGTGATTTTTTTAATAAAATGATTATTTGCAATGATATT
TATTTATGAAAACTTAAAAAGTCTTAAATATTTTGTTATTATTCTCATTTAGATT
Found at i:32456824 original size:21 final size:21
Alignment explanation
Indices: 32456795--32456835 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
32456785 CTTGTTTCGT
*
32456795 GAGAAATTTGAGAGAAAATGG
1 GAGAAATTTAAGAGAAAATGG
* *
32456816 GAGAGATTTAAGGGAAAATG
1 GAGAAATTTAAGAGAAAATG
32456836 ATAAAAGAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.46, C:0.00, G:0.34, T:0.20
Consensus pattern (21 bp):
GAGAAATTTAAGAGAAAATGG
Found at i:32461823 original size:52 final size:52
Alignment explanation
Indices: 32461745--32461850 Score: 203
Period size: 52 Copynumber: 2.0 Consensus size: 52
32461735 GGTAGATTTT
*
32461745 GTTAAACGACTTTTTGGATTTATATGGCATGTATAGGGAATTGAAGTAAAAA
1 GTTAAACAACTTTTTGGATTTATATGGCATGTATAGGGAATTGAAGTAAAAA
32461797 GTTAAACAACTTTTTGGATTTATATGGCATGTATAGGGAATTGAAGTAAAAA
1 GTTAAACAACTTTTTGGATTTATATGGCATGTATAGGGAATTGAAGTAAAAA
32461849 GT
1 GT
32461851 AATAGAATGA
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.37, C:0.06, G:0.23, T:0.35
Consensus pattern (52 bp):
GTTAAACAACTTTTTGGATTTATATGGCATGTATAGGGAATTGAAGTAAAAA
Found at i:32466363 original size:5 final size:5
Alignment explanation
Indices: 32466353--32466378 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
32466343 CTTTCTCTCG
32466353 TTTAT TTTAT TTTAT TTTAT TTTAT T
1 TTTAT TTTAT TTTAT TTTAT TTTAT T
32466379 CAAATCCCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTAT
Found at i:32466529 original size:7 final size:6
Alignment explanation
Indices: 32466498--32466528 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
32466488 TTATTTTCAT
32466498 ATTTAA ATTTAA ATTTAA ATTTAA TATTTAA
1 ATTTAA ATTTAA ATTTAA ATTTAA -ATTTAA
32466529 TTTGGTACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
ATTTAA
Found at i:32466531 original size:12 final size:13
Alignment explanation
Indices: 32466496--32466528 Score: 59
Period size: 12 Copynumber: 2.6 Consensus size: 13
32466486 TCTTATTTTC
32466496 ATATTTAAATTTA
1 ATATTTAAATTTA
32466509 A-ATTTAAATTTA
1 ATATTTAAATTTA
32466521 ATATTTAA
1 ATATTTAA
32466529 TTTGGTACTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATATTTAAATTTA
Found at i:32467046 original size:16 final size:16
Alignment explanation
Indices: 32467003--32467054 Score: 70
Period size: 16 Copynumber: 3.2 Consensus size: 16
32466993 CAAAAATAAC
32467003 TAATGGAATAGAGGTG
1 TAATGGAATAGAGGTG
*
32467019 T-ATTGAATTAGAGGTG
1 TAATGGAA-TAGAGGTG
*
32467035 TAATGGGATAGAGGTG
1 TAATGGAATAGAGGTG
32467051 TAAT
1 TAAT
32467055 AACAAATCAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
15 5 0.16
16 22 0.71
17 4 0.13
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.31
Consensus pattern (16 bp):
TAATGGAATAGAGGTG
Found at i:32467303 original size:15 final size:15
Alignment explanation
Indices: 32467268--32467320 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
32467258 TTAATCATAT
* *
32467268 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
32467284 TTAAATATATTTTAA
1 TTAAATATAATTTAA
32467299 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
32467315 TAAAAT
1 TTAAAT
32467321 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:32467457 original size:155 final size:155
Alignment explanation
Indices: 32467175--32468093 Score: 1811
Period size: 155 Copynumber: 5.9 Consensus size: 155
32467165 TAGAATACCC
* * *
32467175 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
32467240 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
32467305 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
32467330 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
32467395 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
32467460 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
32467485 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
32467550 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
32467615 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
32467640 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
32467705 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
32467770 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
32467795 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
32467860 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
32467925 TATAATTTAATAAAATTCTTAATAA
131 TATAATTTAATAAAATTCTTAATAA
32467950 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
32468015 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
32468080 TATAATTTAATAAA
131 TATAATTTAATAAA
32468094 CCGTTCCACT
Statistics
Matches: 761, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
155 761 1.00
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (155 bp):
TTAGCAGAAATTTATTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
TTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
TATAATTTAATAAAATTCTTAATAA
Found at i:32467458 original size:15 final size:15
Alignment explanation
Indices: 32467423--32467475 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
32467413 TTAATCATAT
* *
32467423 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
32467439 TTAAATATATTTTAA
1 TTAAATATAATTTAA
32467454 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
32467470 TAAAAT
1 TTAAAT
32467476 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:32467613 original size:15 final size:15
Alignment explanation
Indices: 32467578--32467630 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
32467568 TTAATCATAT
* *
32467578 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
32467594 TTAAATATATTTTAA
1 TTAAATATAATTTAA
32467609 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
32467625 TAAAAT
1 TTAAAT
32467631 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:32467768 original size:15 final size:15
Alignment explanation
Indices: 32467733--32467785 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
32467723 TTAATCATAT
* *
32467733 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
32467749 TTAAATATATTTTAA
1 TTAAATATAATTTAA
32467764 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
32467780 TAAAAT
1 TTAAAT
32467786 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:32467923 original size:15 final size:15
Alignment explanation
Indices: 32467888--32467940 Score: 52
Period size: 16 Copynumber: 3.4 Consensus size: 15
32467878 TTAATCATAT
* *
32467888 TTAAACATAATTATTA
1 TTAAATATAATT-TAA
*
32467904 TTAAATATATTTTAA
1 TTAAATATAATTTAA
32467919 TTAAAATATAATTTAA
1 TT-AAATATAATTTAA
*
32467935 TAAAAT
1 TTAAAT
32467941 TCTTAATAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
15 8 0.26
16 23 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (15 bp):
TTAAATATAATTTAA
Found at i:32480838 original size:10 final size:10
Alignment explanation
Indices: 32480823--32480851 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
32480813 NNNNNNNNNN
32480823 TTTAAAATAT
1 TTTAAAATAT
32480833 TTTAAAATA-
1 TTTAAAATAT
32480842 TTTAAAATAT
1 TTTAAAATAT
32480852 AAATATGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (10 bp):
TTTAAAATAT
Found at i:32482647 original size:16 final size:15
Alignment explanation
Indices: 32482626--32482655 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
32482616 CAAACATGCT
32482626 TTAACACATTATCAAA
1 TTAACACATT-TCAAA
32482642 TTAACACATTTCAA
1 TTAACACATTTCAA
32482656 TAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (15 bp):
TTAACACATTTCAAA
Found at i:32486002 original size:17 final size:16
Alignment explanation
Indices: 32485982--32486041 Score: 50
Period size: 17 Copynumber: 3.6 Consensus size: 16
32485972 CTTTCTCATT
32485982 TTTTTCCTTTTTCTTTC
1 TTTTT-CTTTTTCTTTC
* *
32485999 TTTTTCCCTTTTGTTTC
1 TTTTT-CTTTTTCTTTC
* *
32486016 GTTTGT-TATTTCTTTC
1 -TTTTTCTTTTTCTTTC
32486032 TTTTTCTTTT
1 TTTTTCTTTT
32486042 ATTTTATNNN
Statistics
Matches: 33, Mismatches: 8, Indels: 5
0.72 0.17 0.11
Matches are distributed among these distances:
15 4 0.12
16 10 0.30
17 15 0.45
18 4 0.12
ACGTcount: A:0.02, C:0.18, G:0.05, T:0.75
Consensus pattern (16 bp):
TTTTTCTTTTTCTTTC
Found at i:32489782 original size:422 final size:423
Alignment explanation
Indices: 32488998--32489843 Score: 1480
Period size: 422 Copynumber: 2.0 Consensus size: 423
32488988 ACTAATAGTA
* *
32488998 ACCCGATCTCAAATCAATCTTTAAAAAGACAAAAGCTCCTTTTAGTTGATCAAATAAGTCATCGA
1 ACCCGATCTCAAATCAATCTTTAAAAAGACAAAAGCTCCTTTTAGTTGATCAAATAAGTAATCAA
** * *
32489063 TACGGGGGGTAGGATATCGATTCTTAATCGTTAACTTATTTAATTACTGATAATGAATACAAAGT
66 TACGGGGAATAGGATATCGATTCTCAATCGTCAACTTATTTAATTACTGATAATGAATACAAAGT
* *
32489128 CGCATCTAACCATCTTTCTTTTTAACAAAAAGTACTGGAGCTCCCCAAGGCGATACACTGGGGCG
131 CGCATCGAACCATCTTTCTTTTTAACAAAAAGTACTGGAGCTCCCCAAGGCGATACACTGGGGCA
* *
32489193 TATAAAACCACGATCCAATAAGTTTTGCAATTTTACTTTTAATTCTTTCAACTCTGTAGGTGACA
196 TATAAAACCACGATCCAATAAGTTTTACAATTGTACTTTTAATTCTTTCAACTCTGTAGGTGACA
* * *
32489258 TACGATAGGGGGCATTGACACTAGAGCCATACTAGGAGACACTTCAATTGCAAACTCAATCTCTC
261 TACGATAGGGGGCATTGACACTAGAGCCATACTAGAAAACACTTCAATTGCAAACTCAACCTCTC
32489323 GATCCGATGGTAATCTCGGTAATTTCTCGGGAAACATATCAGGGAATTCACAAACAATTTAAATT
326 GATCCGATGGTAATCTCGGTAATTTCTCGGGAAACATATCAGGGAATTCACAAACAATTTAAATT
32489388 TTACTACA-TGACTATCAACAGAATTCGAATTG
391 TTACTACACTGACTATCAACAGAATTCGAATTG
* *
32489420 ACCCGATCTCAAATCAATCTTTAAAAAGACAGAAGCTCTTTTTAGTTGATCAAATAAGTAATCAA
1 ACCCGATCTCAAATCAATCTTTAAAAAGACAAAAGCTCCTTTTAGTTGATCAAATAAGTAATCAA
32489485 TACGGGGAATAGGATATCGATTCTCAATCGTCAACTTATTTAATTACTGATAATGAATACAAAGT
66 TACGGGGAATAGGATATCGATTCTCAATCGTCAACTTATTTAATTACTGATAATGAATACAAAGT
32489550 CGCATCGAACCATCTTTCTTTTTAACAAAAAGTACTGGAGCTCCCCAAGGCGATACACTGGGGCA
131 CGCATCGAACCATCTTTCTTTTTAACAAAAAGTACTGGAGCTCCCCAAGGCGATACACTGGGGCA
32489615 TATAAAACCACGATCCAATAAGTTTTACAATTGTACTTTTAATTCTTTCAACTCTGTAGGTGACA
196 TATAAAACCACGATCCAATAAGTTTTACAATTGTACTTTTAATTCTTTCAACTCTGTAGGTGACA
* * *
32489680 TACGTTAGGGGGCATTGACACTGGAGCCGTACTAGAAAACACTTCAATTGCAAACTCAACCTC-C
261 TACGATAGGGGGCATTGACACTAGAGCCATACTAGAAAACACTTCAATTGCAAACTCAACCTCTC
* *
32489744 TGATCCGATGGTAATCTCGGTAATTTCTCGGGAAACATATCAGGGAATTCATAAGCAATTTAAAT
326 -GATCCGATGGTAATCTCGGTAATTTCTCGGGAAACATATCAGGGAATTCACAAACAATTTAAAT
*
32489809 TTTACTGCACTGACTATCAACAGAATTCGAATTG
390 TTTACTACACTGACTATCAACAGAATTCGAATTG
32489843 A
1 A
32489844 TGACATAGGC
Statistics
Matches: 401, Mismatches: 21, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
421 1 0.00
422 375 0.94
423 25 0.06
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (423 bp):
ACCCGATCTCAAATCAATCTTTAAAAAGACAAAAGCTCCTTTTAGTTGATCAAATAAGTAATCAA
TACGGGGAATAGGATATCGATTCTCAATCGTCAACTTATTTAATTACTGATAATGAATACAAAGT
CGCATCGAACCATCTTTCTTTTTAACAAAAAGTACTGGAGCTCCCCAAGGCGATACACTGGGGCA
TATAAAACCACGATCCAATAAGTTTTACAATTGTACTTTTAATTCTTTCAACTCTGTAGGTGACA
TACGATAGGGGGCATTGACACTAGAGCCATACTAGAAAACACTTCAATTGCAAACTCAACCTCTC
GATCCGATGGTAATCTCGGTAATTTCTCGGGAAACATATCAGGGAATTCACAAACAATTTAAATT
TTACTACACTGACTATCAACAGAATTCGAATTG
Found at i:32493347 original size:29 final size:30
Alignment explanation
Indices: 32493310--32493369 Score: 86
Period size: 29 Copynumber: 2.0 Consensus size: 30
32493300 AGCTTTGGTC
*
32493310 TTTCTCCTTTTCTTTCCTTTTTTCTTTCTT
1 TTTCTCCTTTTCTTTCCTTTGTTCTTTCTT
* *
32493340 TTTC-CCTTTTGTTTCGTTTGTTCTTTCTT
1 TTTCTCCTTTTCTTTCCTTTGTTCTTTCTT
32493369 T
1 T
32493370 CTTTTTCTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 23 0.85
30 4 0.15
ACGTcount: A:0.00, C:0.23, G:0.05, T:0.72
Consensus pattern (30 bp):
TTTCTCCTTTTCTTTCCTTTGTTCTTTCTT
Found at i:32493415 original size:7 final size:7
Alignment explanation
Indices: 32493403--32493468 Score: 53
Period size: 7 Copynumber: 8.6 Consensus size: 7
32493393 ATTTTATTAT
32493403 TATAATA
1 TATAATA
32493410 TATAATA
1 TATAATA
32493417 TAATATATA
1 T-ATA-ATA
32493426 TACTTAATA
1 TA--TAATA
*
32493435 -ATTAAGA
1 TA-TAATA
32493442 TATAATA
1 TATAATA
32493449 TTATAATA
1 -TATAATA
32493457 TTATAATA
1 -TATAATA
32493465 TATA
1 TATA
32493469 TTTTAACTTT
Statistics
Matches: 51, Mismatches: 2, Indels: 12
0.78 0.03 0.18
Matches are distributed among these distances:
7 21 0.41
8 21 0.41
9 7 0.14
10 2 0.04
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (7 bp):
TATAATA
Found at i:32493455 original size:8 final size:8
Alignment explanation
Indices: 32493400--32493465 Score: 50
Period size: 8 Copynumber: 8.4 Consensus size: 8
32493390 TTTATTTTAT
32493400 TATTATAA
1 TATTATAA
32493408 TA-TATAA
1 TATTATAA
*
32493415 TATAAT-A
1 TATTATAA
32493422 TATATACTTAA
1 TAT-TA--TAA
*
32493433 TAAT-TAA
1 TATTATAA
*
32493440 GA-TATAA
1 TATTATAA
32493447 TATTATAA
1 TATTATAA
32493455 TATTATAA
1 TATTATAA
32493463 TAT
1 TAT
32493466 ATATTTTAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 14
0.71 0.08 0.22
Matches are distributed among these distances:
6 1 0.02
7 19 0.41
8 21 0.46
10 2 0.04
11 3 0.07
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (8 bp):
TATTATAA
Found at i:32493462 original size:27 final size:26
Alignment explanation
Indices: 32493400--32493468 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 26
32493390 TTTATTTTAT
32493400 TATTATAATATATAATATAATATATA
1 TATTATAATATATAATATAATATATA
32493426 TACTTAATAAT-TA-AGATATAATATTATAA
1 TA-TT-ATAATATATA-ATATAATA-TAT-A
32493455 TATTATAATATATA
1 TATTATAATATATA
32493469 TTTTAACTTT
Statistics
Matches: 36, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
26 3 0.08
27 17 0.47
28 12 0.33
29 4 0.11
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (26 bp):
TATTATAATATATAATATAATATATA
Found at i:32495647 original size:21 final size:19
Alignment explanation
Indices: 32495615--32495656 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 19
32495605 ATTCATTTTC
32495615 TATTTATTGTAAATTGGAAAA
1 TATTTATTGTAAA-T-GAAAA
32495636 TATTT-TTGGTAAATGAAAA
1 TATTTATT-GTAAATGAAAA
32495655 TA
1 TA
32495657 GAAATTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
19 7 0.35
20 3 0.15
21 10 0.50
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (19 bp):
TATTTATTGTAAATGAAAA
Found at i:32496516 original size:22 final size:23
Alignment explanation
Indices: 32496487--32496537 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 23
32496477 AATTTATTTT
* *
32496487 ATAA-TAAGATGATAT-TTTATA
1 ATAATTAAGATCATATATATATA
32496508 ATAATTAAGATCATATATATATA
1 ATAATTAAGATCATATATATATA
32496531 A-AATTAA
1 ATAATTAA
32496538 TGATAAACAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 4 0.15
22 16 0.62
23 6 0.23
ACGTcount: A:0.53, C:0.02, G:0.06, T:0.39
Consensus pattern (23 bp):
ATAATTAAGATCATATATATATA
Found at i:32499549 original size:19 final size:20
Alignment explanation
Indices: 32499514--32499551 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
32499504 ATTTCGTATG
32499514 TATTATATTTGTGATATTAT
1 TATTATATTTGTGATATTAT
32499534 TATTA-ATTT-TGAATATTA
1 TATTATATTTGTG-ATATTA
32499552 CATTTTATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 2 0.12
19 10 0.59
20 5 0.29
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
TATTATATTTGTGATATTAT
Found at i:32506507 original size:13 final size:14
Alignment explanation
Indices: 32506489--32506517 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
32506479 GATGCTTATG
32506489 TTTAATTCA-TGAT
1 TTTAATTCATTGAT
32506502 TTTAATTCATTGAT
1 TTTAATTCATTGAT
32506516 TT
1 TT
32506518 CATTGTTGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.59
Consensus pattern (14 bp):
TTTAATTCATTGAT
Found at i:32508630 original size:135 final size:134
Alignment explanation
Indices: 32508388--32508658 Score: 488
Period size: 135 Copynumber: 2.0 Consensus size: 134
32508378 TTTAGCTATG
*
32508388 TTAGTTTTTAATAGAAGAAATTGATGGAAATTTTAATAAAAATATCAATTTGTTCTTTGATGTAA
1 TTAGTTTTTAATAGAAGAAATTGATGAAAATTTTAATAAAAATATCAATTTGTTCTTTGATGTAA
* * * *
32508453 TATACAGGGACTTATTTGTCTAAATTTAAGTAAAATGAGCAAAATATAATCTGACTCTTAATACA
66 TATACAGGGACTTATTTGTCCAAATTTAAATAAAATGAGCAAAATATAATC-AACTCCTAATACA
32508518 AAGAT
130 AAGAT
32508523 TTAGTTTTTAATAGAAGAAATTGATGAAAATTTTAATAAAAATATCAATTTGTTCTTTGATGTAA
1 TTAGTTTTTAATAGAAGAAATTGATGAAAATTTTAATAAAAATATCAATTTGTTCTTTGATGTAA
32508588 TATACAGGGACTTATTTGTCCAAATTTAAATAAAATGAGCAAAATATAATCAACTCCTAATACAA
66 TATACAGGGACTTATTTGTCCAAATTTAAATAAAATGAGCAAAATATAATCAACTCCTAATACAA
32508653 AGAT
131 AGAT
32508657 TT
1 TT
32508659 TCGTGATATT
Statistics
Matches: 131, Mismatches: 5, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
134 18 0.14
135 113 0.86
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.37
Consensus pattern (134 bp):
TTAGTTTTTAATAGAAGAAATTGATGAAAATTTTAATAAAAATATCAATTTGTTCTTTGATGTAA
TATACAGGGACTTATTTGTCCAAATTTAAATAAAATGAGCAAAATATAATCAACTCCTAATACAA
AGAT
Found at i:32514317 original size:17 final size:16
Alignment explanation
Indices: 32514271--32514317 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
32514261 CATATTTGAC
32514271 TTTTTTTAAATTAGT-T
1 TTTTTTTAAA-TAGTAT
*
32514287 TTTATTTAAA-AGTAT
1 TTTTTTTAAATAGTAT
32514302 TTTTTTTAATATAGTA
1 TTTTTTTAA-ATAGTA
32514318 AACTAAATAC
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
14 3 0.12
15 9 0.35
16 10 0.38
17 4 0.15
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (16 bp):
TTTTTTTAAATAGTAT
Found at i:32515387 original size:28 final size:28
Alignment explanation
Indices: 32515334--32515387 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
32515324 ATTACCATTA
*
32515334 CACCATTATTCCACACTAGTTCCACTAG
1 CACCATTATTCCACACTAATTCCACTAG
*
32515362 CACCATTATTCCACACTAATTTCACT
1 CACCATTATTCCACACTAATTCCACT
32515388 GGCAGAATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.30, C:0.35, G:0.04, T:0.31
Consensus pattern (28 bp):
CACCATTATTCCACACTAATTCCACTAG
Found at i:32515532 original size:46 final size:45
Alignment explanation
Indices: 32515450--32515543 Score: 170
Period size: 46 Copynumber: 2.1 Consensus size: 45
32515440 ACAAAACCCC
32515450 CCTCTCTATAATTATTTTTTTATTCATTTTACAGTTCATATTTGA
1 CCTCTCTATAATTATTTTTTTATTCATTTTACAGTTCATATTTGA
*
32515495 CCTCTCTATAATTATTTTCTTTATTCGTTTTACAGTTCATATTTGA
1 CCTCTCTATAATTATTTT-TTTATTCATTTTACAGTTCATATTTGA
32515541 CCT
1 CCT
32515544 TCGTGGTTAC
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 18 0.38
46 29 0.62
ACGTcount: A:0.22, C:0.18, G:0.05, T:0.54
Consensus pattern (45 bp):
CCTCTCTATAATTATTTTTTTATTCATTTTACAGTTCATATTTGA
Found at i:32519659 original size:14 final size:15
Alignment explanation
Indices: 32519633--32519661 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32519623 TGATTTATGT
32519633 AAATATGTTGAAAAA
1 AAATATGTTGAAAAA
32519648 AAATAT-TTGAAAAA
1 AAATATGTTGAAAAA
32519662 TTATGTTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (15 bp):
AAATATGTTGAAAAA
Found at i:32529404 original size:16 final size:17
Alignment explanation
Indices: 32529383--32529414 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
32529373 AAATATGCAA
32529383 TCACATAA-TTCATATT
1 TCACATAACTTCATATT
32529399 TCACATAACTTCATAT
1 TCACATAACTTCATAT
32529415 CATCAATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.38, C:0.22, G:0.00, T:0.41
Consensus pattern (17 bp):
TCACATAACTTCATATT
Found at i:32529676 original size:41 final size:42
Alignment explanation
Indices: 32529574--32529687 Score: 126
Period size: 41 Copynumber: 2.7 Consensus size: 42
32529564 AAGGCCCGTA
* * *
32529574 CAATGCCAACGTCCCAGAC-GTGGTCTTACATGTAATCACATAT
1 CAATGCCAATGTCCCAGACAG-GGTCTTACA-GAAATCAAATAT
*
32529617 CAATGCCACTGTCCCAGACAGGGTCTTAC-GCAAATCAAATA-
1 CAATGCCAATGTCCCAGACAGGGTCTTACAG-AAATCAAATAT
* *
32529658 CGATGCCAATGTCCCAGACATGGTCTTACA
1 CAATGCCAATGTCCCAGACAGGGTCTTACA
32529688 CGTATACACA
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
41 27 0.44
42 8 0.13
43 25 0.41
44 1 0.02
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.23
Consensus pattern (42 bp):
CAATGCCAATGTCCCAGACAGGGTCTTACAGAAATCAAATAT
Found at i:32529726 original size:84 final size:84
Alignment explanation
Indices: 32529576--32529734 Score: 200
Period size: 84 Copynumber: 1.9 Consensus size: 84
32529566 GGCCCGTACA
* * *
32529576 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCACATATCAATGCCACTGTCCCAGACAGGGT
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCAATGCCACTGTCCCAAACAGGGT
*
32529641 CTTACGCAAATCAAATACG
66 CTTACACAAATCAAATACG
* *
32529660 ATGCCAATGTCCCAGACATGGTCTTACACGT-ATACACA-AGTCGATGCCAAC-GTCCCAAAC-G
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAT-CACATA-TCAATGCC-ACTGTCCCAAACAG
32529721 TGGTCTTACACAAA
63 -GGTCTTACACAAA
32529735 AATACATATC
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
83 4 0.06
84 59 0.91
85 2 0.03
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (84 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATCACATATCAATGCCACTGTCCCAAACAGGGT
CTTACACAAATCAAATACG
Found at i:32529731 original size:43 final size:42
Alignment explanation
Indices: 32529576--32529731 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 42
32529566 GGCCCGTACA
* *
32529576 ATGCCAACGTCCCAGACGTGGTCTTACATGTA-ATCACATATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTATA-CACA-ATCG
* **
32529619 ATGCC-ACTGTCCCAGACAG-GGTCTTACGCAAAT-CA-AATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTATACACAAT-CG
* *
32529660 ATGCCAATGTCCCAGACATGGTCTTACACGTATACACAAGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTATACACAA-TCG
*
32529703 ATGCCAACGTCCCAAACGTGGTCTTACAC
1 ATGCCAACGTCCCAGACGTGGTCTTACAC
32529732 AAAAATACAT
Statistics
Matches: 91, Mismatches: 13, Indels: 18
0.75 0.11 0.15
Matches are distributed among these distances:
40 2 0.02
41 27 0.30
42 7 0.08
43 53 0.58
44 2 0.02
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.22
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTATACACAATCG
Found at i:32531479 original size:15 final size:15
Alignment explanation
Indices: 32531459--32531493 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
32531449 AAATATAAGA
32531459 ATTTTGTTAAGCAAT
1 ATTTTGTTAAGCAAT
32531474 ATTTTGTTAAGCAAT
1 ATTTTGTTAAGCAAT
32531489 -TTTTG
1 ATTTTG
32531494 ATGATTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.29, C:0.06, G:0.14, T:0.51
Consensus pattern (15 bp):
ATTTTGTTAAGCAAT
Found at i:32542186 original size:15 final size:15
Alignment explanation
Indices: 32542166--32542201 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
32542156 GCCCTTGTAG
*
32542166 TCGTTGGAAAAGTTA
1 TCGTTGGAAAAATTA
32542181 TCGTTGGAAAAATTA
1 TCGTTGGAAAAATTA
32542196 TCGTTG
1 TCGTTG
32542202 AAAGGAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.31, C:0.08, G:0.25, T:0.36
Consensus pattern (15 bp):
TCGTTGGAAAAATTA
Found at i:32547032 original size:22 final size:22
Alignment explanation
Indices: 32547006--32547055 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
32546996 ACTAGATAAA
32547006 TTGTAGAAGTGGAAAAACATCG
1 TTGTAGAAGTGGAAAAACATCG
* *
32547028 TTGTAAAAGTGGAAGAACATCG
1 TTGTAGAAGTGGAAAAACATCG
32547050 TTGTAG
1 TTGTAG
32547056 TGTTTGTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.38, C:0.08, G:0.28, T:0.26
Consensus pattern (22 bp):
TTGTAGAAGTGGAAAAACATCG
Found at i:32560633 original size:26 final size:25
Alignment explanation
Indices: 32560597--32560677 Score: 74
Period size: 26 Copynumber: 3.1 Consensus size: 25
32560587 ATACCGTAGT
*
32560597 TCTTTGTGAGTGTCCCT-TTATATGGC
1 TCTTTGTGAGT-TCCCTATTA-AAGGC
*
32560623 TCTTTGTGAGTTTCCTGATTAAAGGC
1 TCTTTGTGAGTTCCCT-ATTAAAGGC
** *
32560649 TCTTTGTGAGCTTCCAGATTAATGGC
1 TCTTTGTGAG-TTCCCTATTAAAGGC
32560675 TCT
1 TCT
32560678 CCGAAGCTTC
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
25 4 0.09
26 36 0.78
27 6 0.13
ACGTcount: A:0.16, C:0.19, G:0.22, T:0.43
Consensus pattern (25 bp):
TCTTTGTGAGTTCCCTATTAAAGGC
Found at i:32560700 original size:24 final size:24
Alignment explanation
Indices: 32560657--32560797 Score: 81
Period size: 24 Copynumber: 5.8 Consensus size: 24
32560647 GCTCTTTGTG
*
32560657 AGCTTCCAGATTAATGGCTCTCCGA
1 AGCTTCCCGA-TAATGGCTCTCCGA
* * *
32560682 AGCTTCCCGATAATAGCTCGCTTG-
1 AGCTTCCCGATAATGGCTCTC-CGA
* ** *
32560706 AGCTTCCCGATATATGGCTATTTGG
1 AGCTTCCCGATA-ATGGCTCTCCGA
*
32560731 AGCTTCCCGTTAATGGCTCT-CGA
1 AGCTTCCCGATAATGGCTCTCCGA
* * * * *
32560754 AGCTACCTGTTATTGGCTCGCACG-
1 AGCTTCCCGATAATGGCTCTC-CGA
* *
32560778 ATCTTCCCGATTATGGCTCT
1 AGCTTCCCGATAATGGCTCT
32560798 TATGAGCTTC
Statistics
Matches: 88, Mismatches: 23, Indels: 11
0.72 0.19 0.09
Matches are distributed among these distances:
23 17 0.19
24 43 0.49
25 28 0.32
ACGTcount: A:0.19, C:0.28, G:0.21, T:0.32
Consensus pattern (24 bp):
AGCTTCCCGATAATGGCTCTCCGA
Found at i:32560807 original size:24 final size:23
Alignment explanation
Indices: 32560617--32560810 Score: 79
Period size: 24 Copynumber: 7.9 Consensus size: 23
32560607 TGTCCCTTTA
* *
32560617 TATGGCTCTTTGTGAGTTTCCTGAT
1 TATGGCTC-TT-TGAGCTTCCCGAT
* *
32560642 TAAAGGCTCTTTGTGAGCTTCCAGAT
1 T-ATGGCTC-TT-TGAGCTTCCCGAT
**
32560668 TAATGGCTCTCCGAAGCTTCCCGAT
1 T-ATGGCTCTTTG-AGCTTCCCGAT
* * *
32560693 AATAGCTCGCTTGAGCTTCCCGAT
1 TATGGCTC-TTTGAGCTTCCCGAT
*
32560717 ATATGGCTATTTGGAGCTTCCCG-T
1 -TATGGCTCTTT-GAGCTTCCCGAT
* * *
32560741 TAATGGCTC-TCGAAGCTACCTG-T
1 T-ATGGCTCTTTG-AGCTTCCCGAT
*** *
32560764 TATTGGCTCGCACGATCTTCCCGAT
1 TA-TGGCTC-TTTGAGCTTCCCGAT
32560789 TATGGCTCTTATGAGCTTCCCG
1 TATGGCTCTT-TGAGCTTCCCG
32560811 TTAGACAGCC
Statistics
Matches: 129, Mismatches: 28, Indels: 25
0.71 0.15 0.14
Matches are distributed among these distances:
22 2 0.02
23 17 0.13
24 48 0.37
25 33 0.26
26 29 0.22
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (23 bp):
TATGGCTCTTTGAGCTTCCCGAT
Found at i:32571138 original size:16 final size:16
Alignment explanation
Indices: 32571114--32571148 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
32571104 ACTTAACAGA
* *
32571114 AGAGTTCGCCAAACCT
1 AGAGCTCGCCAAAACT
32571130 AGAGCTCGCCAAAACT
1 AGAGCTCGCCAAAACT
32571146 AGA
1 AGA
32571149 AGTCCGCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.37, C:0.29, G:0.20, T:0.14
Consensus pattern (16 bp):
AGAGCTCGCCAAAACT
Found at i:32575183 original size:39 final size:39
Alignment explanation
Indices: 32575136--32575225 Score: 171
Period size: 39 Copynumber: 2.3 Consensus size: 39
32575126 GGAGTTGTAA
*
32575136 GTGACTATTCATCTACATCACTTAAATGTTATAGGAGTT
1 GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
32575175 GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
1 GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
32575214 GTGACTATTCAT
1 GTGACTATTCAT
32575226 GCATGTGTGT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.38
Consensus pattern (39 bp):
GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
Found at i:32577188 original size:28 final size:28
Alignment explanation
Indices: 32577149--32577307 Score: 210
Period size: 28 Copynumber: 5.7 Consensus size: 28
32577139 CAGTAACAGT
* * **
32577149 ACAATGTAGGCCTTAGCCCAATACAACA
1 ACAATGTGGGCCTTAGCCCAATATAGTA
* * *
32577177 ACAATGTGGGCCTAAGCCCAATACAGCA
1 ACAATGTGGGCCTTAGCCCAATATAGTA
*
32577205 ACAATGTGGGCCTTAGCCCAAAATAGTA
1 ACAATGTGGGCCTTAGCCCAATATAGTA
* *
32577233 ACAACGTGGGCCTTAGCCCAAAATAGTA
1 ACAATGTGGGCCTTAGCCCAATATAGTA
* *
32577261 ACAACGTGGGTCTTAGCCCAATATAGTA
1 ACAATGTGGGCCTTAGCCCAATATAGTA
32577289 ACAATGTGGGCCTTAGCCC
1 ACAATGTGGGCCTTAGCCC
32577308 TAAACAGTAT
Statistics
Matches: 119, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 119 1.00
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.19
Consensus pattern (28 bp):
ACAATGTGGGCCTTAGCCCAATATAGTA
Found at i:32577454 original size:26 final size:26
Alignment explanation
Indices: 32577425--32577500 Score: 107
Period size: 26 Copynumber: 2.9 Consensus size: 26
32577415 ACACATCAAT
* *
32577425 ATCGCAGCAACGCTGCCAGTAATAGA
1 ATCGCAGCAAAGCTGCCAGTAACAGA
*
32577451 ATCGCAGCAAAGCTGCCAGTAACAGT
1 ATCGCAGCAAAGCTGCCAGTAACAGA
* *
32577477 ATCGCAACAAAGCTGTCAGTAACA
1 ATCGCAGCAAAGCTGCCAGTAACA
32577501 ATATGCTTCC
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.37, C:0.26, G:0.21, T:0.16
Consensus pattern (26 bp):
ATCGCAGCAAAGCTGCCAGTAACAGA
Found at i:32577670 original size:27 final size:27
Alignment explanation
Indices: 32577638--32577700 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
32577628 TTTCATCTCC
32577638 TAGGGGTATAATAG-TCATTTTACCCTA
1 TAGGGGTAT-ATAGATCATTTTACCCTA
* * * *
32577665 TGGGGGTATTTCGATCATTTTATCCTA
1 TAGGGGTATATAGATCATTTTACCCTA
32577692 TAGGGGTAT
1 TAGGGGTAT
32577701 TTCGGTCATT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.24, C:0.13, G:0.24, T:0.40
Consensus pattern (27 bp):
TAGGGGTATATAGATCATTTTACCCTA
Found at i:32577741 original size:28 final size:27
Alignment explanation
Indices: 32577652--32578291 Score: 168
Period size: 27 Copynumber: 24.2 Consensus size: 27
32577642 GGTATAATAG
* *
32577652 TCATTTTACCCTATGGGGGTATTTCGA
1 TCATTTTATCCTATGAGGGTATTTCGA
*
32577679 TCATTTTATCCTAT-AGGGGTATTTCGG
1 TCATTTTATCCTATGA-GGGTATTTCGA
* *
32577706 TCATTTTATCGTATGAGGGTAATTCGA
1 TCATTTTATCCTATGAGGGTATTTCGA
* *
32577733 TCATTTTTACCCT-T--CGGTCATTTC-A
1 TCA-TTTTATCCTATGAGGGT-ATTTCGA
* * *
32577758 -C--GTT-T-C---G-GGGTATTTTGG
1 TCATTTTATCCTATGAGGGTATTTCGA
*** * *
32577776 TCATTTCGCCCTTTG-GGATATTTCGA
1 TCATTTTATCCTATGAGGGTATTTCGA
* * * * * *
32577802 TAATTTCA-CCTTTCAGGGTATTTTGG
1 TCATTTTATCCTATGAGGGTATTTCGA
* * * *
32577828 TCAGTTTACCCTATGGGGGTAATTC-A
1 TCATTTTATCCTATGAGGGTATTTCGA
* * *
32577854 GTAATTTTA-CCTTTCGGGAGGTATTTCG-
1 -TCATTTTATCCTAT-GAG-GGTATTTCGA
* * * * *
32577882 TTATTTCACCCTTTGAGGGTATTTCAA
1 TCATTTTATCCTATGAGGGTATTTCGA
* * *
32577909 TCATTTTA-CCCATCGAGGGTATTTTGG
1 TCATTTTATCCTAT-GAGGGTATTTCGA
* * *
32577936 TCATTTTA-CCTTTTAAGGGTATTTCAA
1 TCATTTTATCC-TATGAGGGTATTTCGA
* *
32577963 TCATTTTACCCTGT-AGGGGTATTTCGA
1 TCATTTTATCCTATGA-GGGTATTTCGA
* * *
32577990 TCATTTTA-CCTTTTGGGGGCATTTC-A
1 TCATTTTATCC-TATGAGGGTATTTCGA
* * *
32578016 GTCATTTTACCCT-TGGGGGTATTTCAA
1 -TCATTTTATCCTATGAGGGTATTTCGA
* ** * *
32578043 TCATTTT-TACCCATCGAGAATATTTTGG
1 TCATTTTAT-CCTAT-GAGGGTATTTCGA
* * *
32578071 TCATTTTACCCT-TCGAGGGCATTTTTG-
1 TCATTTTATCCTAT-GAGGGTA-TTTCGA
* * *
32578098 TCATTTTA-CCT-TCGAGGGCATTTTGG
1 TCATTTTATCCTAT-GAGGGTATTTCGA
* *
32578124 TCATTTTACCCT-TCGAGGGCATTTCGA
1 TCATTTTATCCTAT-GAGGGTATTTCGA
* * *
32578151 TTATTTTACCCT-TCGAGGGTATTTCGG
1 TCATTTTATCCTAT-GAGGGTATTTCGA
* *
32578178 TCATTTTACCCT-TCGAGGGTATTTTGA
1 TCATTTTATCCTAT-GAGGGTATTTCGA
* *
32578205 CCATTTTACCCT-TCGAGGGTATTTC-A
1 TCATTTTATCCTAT-GAGGGTATTTCGA
*
32578231 GTCATTTTACCCTAT-AGGAGTATTTCGA
1 -TCATTTTATCCTATGAGG-GTATTTCGA
* *
32578259 TCATTTTA-CCTGTCG-GAGGTATTTCGG
1 TCATTTTATCCTAT-GAG-GGTATTTCGA
32578286 TCATTT
1 TCATTT
32578292 GCCCACAAAT
Statistics
Matches: 479, Mismatches: 89, Indels: 90
0.73 0.14 0.14
Matches are distributed among these distances:
17 4 0.01
18 3 0.01
19 2 0.00
21 3 0.01
23 1 0.00
24 1 0.00
25 14 0.03
26 99 0.21
27 303 0.63
28 49 0.10
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.43
Consensus pattern (27 bp):
TCATTTTATCCTATGAGGGTATTTCGA
Found at i:32577862 original size:27 final size:27
Alignment explanation
Indices: 32577817--32578291 Score: 275
Period size: 27 Copynumber: 17.6 Consensus size: 27
32577807 TCACCTTTCA
** * *
32577817 GGGTATTTTGGTCAGTTTACCCTATGG
1 GGGTATTTCAGTCATTTTACCCTTTGG
* *
32577844 GGGTAATTCAGTAATTTTA-CCTTTCGG
1 GGGTATTTCAGTCATTTTACCCTTT-GG
* * *
32577871 GAGGTATTTC-GTTATTTCACCCTTTGA
1 G-GGTATTTCAGTCATTTTACCCTTTGG
* * * *
32577898 GGGTATTTCAATCATTTTACCCATCGA
1 GGGTATTTCAGTCATTTTACCCTTTGG
** * **
32577925 GGGTATTTTGGTCATTTTACCTTTTAA
1 GGGTATTTCAGTCATTTTACCCTTTGG
* * *
32577952 GGGTATTTCAATCATTTTACCCTGTAG
1 GGGTATTTCAGTCATTTTACCCTTTGG
*
32577979 GGGTATTTC-GATCATTTTACCTTTTGG
1 GGGTATTTCAG-TCATTTTACCCTTTGG
*
32578006 GGGCATTTCAGTCATTTTACCC-TTGG
1 GGGTATTTCAGTCATTTTACCCTTTGG
* * * *
32578032 GGGTATTTCAATCATTTTTACCCATCGA
1 GGGTATTTCAGTCA-TTTTACCCTTTGG
** ** * *
32578060 GAATATTTTGGTCATTTTACCCTTCGA
1 GGGTATTTCAGTCATTTTACCCTTTGG
* ** * *
32578087 GGGCATTTTTGTCATTTTA-CCTTCGA
1 GGGTATTTCAGTCATTTTACCCTTTGG
* ** * *
32578113 GGGCATTTTGGTCATTTTACCCTTCGA
1 GGGTATTTCAGTCATTTTACCCTTTGG
* * * *
32578140 GGGCATTTC-GATTATTTTACCCTTCGA
1 GGGTATTTCAG-TCATTTTACCCTTTGG
* * *
32578167 GGGTATTTCGGTCATTTTACCCTTCGA
1 GGGTATTTCAGTCATTTTACCCTTTGG
* * * *
32578194 GGGTATTT-TGACCATTTTACCCTTCGA
1 GGGTATTTCAG-TCATTTTACCCTTTGG
* *
32578221 GGGTATTTCAGTCATTTTACCCTATAG
1 GGGTATTTCAGTCATTTTACCCTTTGG
* *
32578248 GAGTATTTC-GATCATTTTA-CCTGTCGG
1 GGGTATTTCAG-TCATTTTACCCT-TTGG
* *
32578275 AGGTATTTCGGTCATTT
1 GGGTATTTCAGTCATTT
32578292 GCCCACAAAT
Statistics
Matches: 365, Mismatches: 67, Indels: 32
0.79 0.14 0.07
Matches are distributed among these distances:
26 59 0.16
27 279 0.76
28 27 0.07
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.42
Consensus pattern (27 bp):
GGGTATTTCAGTCATTTTACCCTTTGG
Found at i:32577915 original size:54 final size:53
Alignment explanation
Indices: 32577816--32578291 Score: 392
Period size: 54 Copynumber: 8.8 Consensus size: 53
32577806 TTCACCTTTC
* * * * * *
32577816 AGGGTATTTTGGTCAGTTTACCCTAT-GGGGGTAATTCAGTAATTTTACCTTTCG
1 AGGGTA-TTTCGTCATTTTACCCT-TCGAGGGTATTTCAGTCATTTTACCCTTCG
* * * * * *
32577870 GGAGGTATTTCGTTATTTCACCCTTTGAGGGTATTTCAATCATTTTACCCATCG
1 AG-GGTATTTCGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCG
* * ** * *
32577924 AGGGTATTTTGGTCATTTTACCTTTTAAGGGTATTTCAATCATTTTACCCTGTAG
1 AGGGTA-TTTCGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCT-TCG
* * * *
32577979 -GGGTATTTCGATCATTTTACCTTTTGGGGGCATTTCAGTCATTTTACCCTT-G
1 AGGGTATTTCG-TCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCG
* * * ** **
32578031 GGGGTATTTCAATCATTTTTACCCATCGAGAATATTTTGGTCATTTTACCCTTCG
1 AGGGTATTTC-GTCA-TTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCG
* * * **
32578086 AGGGCATTTTTGTCATTTTA-CCTTCGAGGGCATTTTGGTCATTTTACCCTTCG
1 AGGGTA-TTTCGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCG
* * *
32578139 AGGGCATTTCGATTATTTTACCCTTCGAGGGTATTTCGGTCATTTTACCCTTCG
1 AGGGTATTTCG-TCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCG
* *
32578193 AGGGTATTTTGACCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTAT--
1 AGGGTATTTCG-TCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCT-TCG
*
32578246 AGGAGTATTTCGATCATTTTA-CCTGTCG-GAGGTATTTCGGTCATTT
1 AGG-GTATTTCG-TCATTTTACCCT-TCGAG-GGTATTTCAGTCATTT
32578292 GCCCACAAAT
Statistics
Matches: 352, Mismatches: 54, Indels: 32
0.80 0.12 0.07
Matches are distributed among these distances:
52 5 0.01
53 71 0.20
54 258 0.73
55 15 0.04
56 3 0.01
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.42
Consensus pattern (53 bp):
AGGGTATTTCGTCATTTTACCCTTCGAGGGTATTTCAGTCATTTTACCCTTCG
Found at i:32577929 original size:81 final size:80
Alignment explanation
Indices: 32577794--32578291 Score: 368
Period size: 81 Copynumber: 6.2 Consensus size: 80
32577784 CCCTTTGGGA
* * * * * * * * *
32577794 TATTTCGATAATTTCACCTTTC-AGGGTATTTTGGTCAGTTTACCCTAT-GGGGGTAATTCAGTA
1 TATTTCG-TCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCC-ATCGAGGGTATTTCAGTC
*
32577857 ATTTTACCTTTCGGGAGG
64 ATTTTACCTTTCGAG-GG
* * * * **
32577875 TATTTCGTTATTTCACCCTTTGAGGGTATTTCAATCATTTTACCCATCGAGGGTATTTTGGTCAT
1 TATTTCGTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCATCGAGGGTATTTCAGTCAT
**
32577940 TTTACCTTTTAAGGG
66 TTTACCTTTCGAGGG
* * ** * * *
32577955 TATTTCAATCATTTTACCCTGTAG-GGGTATTTCGATCATTTTACCTTTTGGGGGCATTTCAGTC
1 TATTTC-GTCATTTTACCCT-TCGAGGGTATTTCGATCATTTTACCCATCGAGGGTATTTCAGTC
* *
32578019 ATTTTACCCTT-GGGGG
64 ATTTTACCTTTCGAGGG
* * ** * * * * **
32578035 TATTTCAATCATTTTTACCCATCGAGAATATTTTGGTCATTTTACCCTTCGAGGGCATTTTTGTC
1 TATTTC-GTCA-TTTTACCCTTCGAGGGTATTTCGATCATTTTACCCATCGAGGGTATTTCAGTC
32578100 ATTTTACC-TTCGAGGG
64 ATTTTACCTTTCGAGGG
* * * * * *
32578116 CATTTTGGTCATTTTACCCTTCGAGGGCATTTCGATTATTTTACCCTTCGAGGGTATTTCGGTCA
1 TA-TTTCGTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCATCGAGGGTATTTCAGTCA
*
32578181 TTTTACCCTTCGAGGG
65 TTTTACCTTTCGAGGG
* *
32578197 TATTTTGACCATTTTACCCTTCGAGGGTATTTC-AGTCATTTTACCCTAT--AGGAGTATTTC-G
1 TATTTCG-TCATTTTACCCTTCGAGGGTATTTCGA-TCATTTTACCC-ATCGAGG-GTATTTCAG
*
32578258 ATCATTTTACCTGTCG-GAGG
62 -TCATTTTACCTTTCGAG-GG
32578278 TATTTCGGTCATTT
1 TATTTC-GTCATTT
32578292 GCCCACAAAT
Statistics
Matches: 336, Mismatches: 65, Indels: 32
0.78 0.15 0.07
Matches are distributed among these distances:
80 100 0.30
81 229 0.68
82 7 0.02
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (80 bp):
TATTTCGTCATTTTACCCTTCGAGGGTATTTCGATCATTTTACCCATCGAGGGTATTTCAGTCAT
TTTACCTTTCGAGGG
Found at i:32582636 original size:43 final size:41
Alignment explanation
Indices: 32582588--32582691 Score: 153
Period size: 39 Copynumber: 2.6 Consensus size: 41
32582578 CAACTCTTTA
32582588 TATAGGAGTTGTAAGTGACTATTCATCTACATCACTTAAATGC
1 TATAGGAGTTGT--GTGACTATTCATCTACATCACTTAAATGC
32582631 TATAGGAG-T-TGTGACTATTCATCTACATCACTTAAATGC
1 TATAGGAGTTGTGTGACTATTCATCTACATCACTTAAATGC
*
32582670 AATAGGAG-T-TGTGACTATTCAT
1 TATAGGAGTTGTGTGACTATTCAT
32582692 GCATGTGTGT
Statistics
Matches: 60, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
39 50 0.83
41 1 0.02
42 1 0.02
43 8 0.13
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (41 bp):
TATAGGAGTTGTGTGACTATTCATCTACATCACTTAAATGC
Found at i:32582652 original size:39 final size:39
Alignment explanation
Indices: 32582602--32582691 Score: 171
Period size: 39 Copynumber: 2.3 Consensus size: 39
32582592 GGAGTTGTAA
*
32582602 GTGACTATTCATCTACATCACTTAAATGCTATAGGAGTT
1 GTGACTATTCATCTACATCACTTAAATGCAATAGGAGTT
32582641 GTGACTATTCATCTACATCACTTAAATGCAATAGGAGTT
1 GTGACTATTCATCTACATCACTTAAATGCAATAGGAGTT
32582680 GTGACTATTCAT
1 GTGACTATTCAT
32582692 GCATGTGTGT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.36
Consensus pattern (39 bp):
GTGACTATTCATCTACATCACTTAAATGCAATAGGAGTT
Found at i:32582725 original size:16 final size:16
Alignment explanation
Indices: 32582704--32582758 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
32582694 ATGTGTGTAA
32582704 CTCTTCATCTTCAAAT
1 CTCTTCATCTTCAAAT
*
32582720 CTCTTCA-CATTTCTAA-
1 CTCTTCATC--TTCAAAT
32582736 CTCTTCATCTTCAAAT
1 CTCTTCATCTTCAAAT
*
32582752 TTCTTCA
1 CTCTTCA
32582759 CATTTCTAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 6 0.19
16 20 0.62
17 6 0.19
ACGTcount: A:0.24, C:0.31, G:0.00, T:0.45
Consensus pattern (16 bp):
CTCTTCATCTTCAAAT
Found at i:32582742 original size:32 final size:32
Alignment explanation
Indices: 32582701--32582775 Score: 141
Period size: 32 Copynumber: 2.3 Consensus size: 32
32582691 TGCATGTGTG
32582701 TAACTCTTCATCTTCAAATCTCTTCACATTTC
1 TAACTCTTCATCTTCAAATCTCTTCACATTTC
*
32582733 TAACTCTTCATCTTCAAATTTCTTCACATTTC
1 TAACTCTTCATCTTCAAATCTCTTCACATTTC
32582765 TAACTCTTCAT
1 TAACTCTTCAT
32582776 AATTTATTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 42 1.00
ACGTcount: A:0.25, C:0.29, G:0.00, T:0.45
Consensus pattern (32 bp):
TAACTCTTCATCTTCAAATCTCTTCACATTTC
Found at i:32582772 original size:16 final size:16
Alignment explanation
Indices: 32582720--32582774 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
32582710 ATCTTCAAAT
32582720 CTCTTCACATTTCTAA
1 CTCTTCACATTTCTAA
*
32582736 CTCTT--CATCTTCAAA
1 CTCTTCACAT-TTCTAA
*
32582751 TTTCTTCACATTTCTAA
1 -CTCTTCACATTTCTAA
32582768 CTCTTCA
1 CTCTTCA
32582775 TAATTTATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 8
0.72 0.09 0.19
Matches are distributed among these distances:
14 3 0.10
15 5 0.16
16 15 0.48
17 5 0.16
18 3 0.10
ACGTcount: A:0.24, C:0.31, G:0.00, T:0.45
Consensus pattern (16 bp):
CTCTTCACATTTCTAA
Found at i:32586709 original size:1 final size:1
Alignment explanation
Indices: 32586703--32586730 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
32586693 CCTTTACTCT
32586703 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
32586731 CTAAAAGCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:32587600 original size:1 final size:1
Alignment explanation
Indices: 32587596--32587620 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
32587586 TTTGCATCCT
32587596 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
32587621 GTGATAGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:32587861 original size:18 final size:18
Alignment explanation
Indices: 32587835--32587883 Score: 57
Period size: 16 Copynumber: 2.8 Consensus size: 18
32587825 TCATATCAAT
32587835 AAATCATTTAAAATTTATA
1 AAAT-ATTTAAAATTTATA
32587854 AAATATTTAAAA--TATA
1 AAATATTTAAAATTTATA
* *
32587870 AAAAATTCAAAATT
1 AAATATTTAAAATT
32587884 CAAAATTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
16 14 0.54
18 8 0.31
19 4 0.15
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (18 bp):
AAATATTTAAAATTTATA
Found at i:32587881 original size:7 final size:7
Alignment explanation
Indices: 32587871--32587895 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
32587861 TAAAATATAA
32587871 AAAATTC
1 AAAATTC
32587878 AAAATTC
1 AAAATTC
32587885 AAAATTC
1 AAAATTC
32587892 AAAA
1 AAAA
32587896 GAAAATTAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAATTC
Found at i:32590836 original size:22 final size:22
Alignment explanation
Indices: 32590808--32590868 Score: 86
Period size: 22 Copynumber: 2.8 Consensus size: 22
32590798 CAAGAACAAA
*
32590808 GGATATCGCGATACCCACCCAT
1 GGATATCACGATACCCACCCAT
* *
32590830 GGATATCACGATACCTACCCCT
1 GGATATCACGATACCCACCCAT
*
32590852 AGATATCACGATACCCA
1 GGATATCACGATACCCA
32590869 AGTCGGGTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.31, C:0.34, G:0.15, T:0.20
Consensus pattern (22 bp):
GGATATCACGATACCCACCCAT
Done.