Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr10
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 48586650
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2183483 characters in sequence are not A, C, G, or T
File 98 of 145
Found at i:32599143 original size:13 final size:13
Alignment explanation
Indices: 32599127--32599151 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32599117 AAATCTAAAA
32599127 ATAAAATAAAATG
1 ATAAAATAAAATG
32599140 ATAAAATAAAAT
1 ATAAAATAAAAT
32599152 AAATGCCTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (13 bp):
ATAAAATAAAATG
Found at i:32612911 original size:28 final size:28
Alignment explanation
Indices: 32612871--32612926 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
32612861 GCTACAGGGG
* *
32612871 ACACACGGGTGAGACACATGCCCGTGTC
1 ACACACGGATGAGACACACGCCCGTGTC
32612899 ACACACGGATGAGACACACGCCCGTGTC
1 ACACACGGATGAGACACACGCCCGTGTC
32612927 TTTGGCCGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.27, C:0.34, G:0.27, T:0.12
Consensus pattern (28 bp):
ACACACGGATGAGACACACGCCCGTGTC
Found at i:32613887 original size:30 final size:30
Alignment explanation
Indices: 32613793--32613894 Score: 87
Period size: 30 Copynumber: 3.4 Consensus size: 30
32613783 GATTGTCACC
** * * * *
32613793 ATCCCTTTTCATAGCTCGATTGCTGAAGCT
1 ATCCCTTTTCATAATTTGATAGTTGAAACT
* * * ** *
32613823 ATCCCTTTTCATATTTTGATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATAGTTGAAACT
32613853 ATCCCTTTTCATAATTTGATAGTTGAAACT
1 ATCCCTTTTCATAATTTGATAGTTGAAACT
*
32613883 ATCCCTTGTCAT
1 ATCCCTTTTCAT
32613895 TGATCGATGA
Statistics
Matches: 55, Mismatches: 17, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
30 55 1.00
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.41
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATAGTTGAAACT
Found at i:32617810 original size:11 final size:11
Alignment explanation
Indices: 32617786--32617820 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
32617776 TTCTGTACCC
* *
32617786 TTCTTTTTCCT
1 TTCTTATTCTT
32617797 TTCTTATTCTT
1 TTCTTATTCTT
32617808 TTCTTATTCTT
1 TTCTTATTCTT
32617819 TT
1 TT
32617821 TTCCTTTTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.06, C:0.20, G:0.00, T:0.74
Consensus pattern (11 bp):
TTCTTATTCTT
Found at i:32619955 original size:31 final size:29
Alignment explanation
Indices: 32619920--32619994 Score: 82
Period size: 31 Copynumber: 2.6 Consensus size: 29
32619910 AGTTTCTAAC
32619920 TTTTTTATAATATTTTCTAATTCTTTCATAT
1 TTTTTTATAATATTTTCTAATT-TTTC-TAT
* *
32619951 TTTTTTA-ATATATTTTGTACTTTTTCTAT
1 TTTTTTATA-ATATTTTCTAATTTTTCTAT
*
32619980 ATTTTTATAAT-TTTT
1 TTTTTTATAATATTTT
32619995 GTATATATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
28 4 0.10
29 11 0.28
30 6 0.15
31 18 0.46
ACGTcount: A:0.24, C:0.07, G:0.01, T:0.68
Consensus pattern (29 bp):
TTTTTTATAATATTTTCTAATTTTTCTAT
Found at i:32619985 original size:19 final size:20
Alignment explanation
Indices: 32619922--32620002 Score: 62
Period size: 19 Copynumber: 4.0 Consensus size: 20
32619912 TTTCTAACTT
32619922 TTTTATAATATTTTCTA-AT-
1 TTTTATAAT-TTTTCTATATA
*
32619941 TCTTTCAT-ATTTTTTTAATATA
1 T-TTT-ATAATTTTTCT-ATATA
* *
32619963 TTTTGTACTTTTTCTATAT-
1 TTTTATAATTTTTCTATATA
*
32619982 TTTTATAATTTTTGTATATA
1 TTTTATAATTTTTCTATATA
32620002 T
1 T
32620003 ATATATTCCA
Statistics
Matches: 48, Mismatches: 7, Indels: 13
0.71 0.10 0.19
Matches are distributed among these distances:
19 22 0.46
20 12 0.25
21 13 0.27
22 1 0.02
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.65
Consensus pattern (20 bp):
TTTTATAATTTTTCTATATA
Found at i:32622571 original size:30 final size:28
Alignment explanation
Indices: 32622528--32622637 Score: 82
Period size: 30 Copynumber: 3.8 Consensus size: 28
32622518 ACTTAAATTT
32622528 TTTTTGTCCAATTTGGTACCTAAACTTAC
1 TTTTT-TCCAATTTGGTACCTAAACTTAC
* *
32622557 ATTTTTTCCTAATTTAGTACCTAATCTT--
1 -TTTTTTCC-AATTTGGTACCTAAACTTAC
* * *
32622585 TTTGGTAGTCCAATTTGATACCTGAACTTGAC
1 TTT--T-TTCCAATTTGGTACCTAAACTT-AC
32622617 TTTTTTCCTAATTT-GTACCTA
1 TTTTTTCC-AATTTGGTACCTA
32622638 TTAATCTCTT
Statistics
Matches: 62, Mismatches: 10, Indels: 17
0.70 0.11 0.19
Matches are distributed among these distances:
27 3 0.05
29 26 0.42
30 30 0.48
32 3 0.05
ACGTcount: A:0.24, C:0.19, G:0.10, T:0.47
Consensus pattern (28 bp):
TTTTTTCCAATTTGGTACCTAAACTTAC
Found at i:32622760 original size:7 final size:7
Alignment explanation
Indices: 32622748--32622777 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
32622738 ATGTATGACC
32622748 GACATGT
1 GACATGT
32622755 GACATGT
1 GACATGT
32622762 GACATGT
1 GACATGT
32622769 GACATGT
1 GACATGT
32622776 GA
1 GA
32622778 TATGATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.27
Consensus pattern (7 bp):
GACATGT
Found at i:32623189 original size:59 final size:59
Alignment explanation
Indices: 32623060--32623211 Score: 166
Period size: 59 Copynumber: 2.6 Consensus size: 59
32623050 ATTGAATCTA
** * * **
32623060 AAAAAAGAGCTTAGATATCAAATTAAAAAAAAGTATCAAGTTCAGGTACCAAATTGGGCC
1 AAAAAAGAATTTAGATACCAAATTAAAAAAAA-TGTCAAGTTCAAATACCAAATTGGGCC
* * *
32623120 CAAAAA-AATTTAGATACCAAATTAGAAAAAAATGTCAAGTTCAAATATCAAATTGGG-T
1 AAAAAAGAATTTAGATACCAAATTA-AAAAAAATGTCAAGTTCAAATACCAAATTGGGCC
* *
32623178 AAAAAAGAATTTAGGTACTAAA-TAAAAAAAATGT
1 AAAAAAGAATTTAGATACCAAATTAAAAAAAATGT
32623212 AAAATTCACA
Statistics
Matches: 78, Mismatches: 12, Indels: 7
0.80 0.12 0.07
Matches are distributed among these distances:
57 10 0.13
58 7 0.09
59 49 0.63
60 12 0.15
ACGTcount: A:0.53, C:0.10, G:0.14, T:0.24
Consensus pattern (59 bp):
AAAAAAGAATTTAGATACCAAATTAAAAAAAATGTCAAGTTCAAATACCAAATTGGGCC
Found at i:32625175 original size:16 final size:17
Alignment explanation
Indices: 32625151--32625193 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
32625141 CCCACATTTA
32625151 TTAAATAAAA-ATTATC
1 TTAAATAAAATATTATC
*
32625167 TTAATTAAAATATTAT-
1 TTAAATAAAATATTATC
*
32625183 TTCAATAAAAT
1 TTAAATAAAAT
32625194 GTTTAAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 18 0.78
17 5 0.22
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (17 bp):
TTAAATAAAATATTATC
Found at i:32625719 original size:3 final size:3
Alignment explanation
Indices: 32625711--32625748 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
32625701 GCGTTGACTG
32625711 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
32625749 CCTACCGGCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:32628934 original size:23 final size:23
Alignment explanation
Indices: 32628907--32629081 Score: 143
Period size: 23 Copynumber: 7.6 Consensus size: 23
32628897 AAACAAAACT
* *
32628907 TACCACAAAGACATTGCAGAATA
1 TACCACAAAGGCATTACAGAATA
* * **
32628930 CACCACAAAGGCACTGTAGAATA
1 TACCACAAAGGCATTACAGAATA
* ** **
32628953 TGCCACAAAGATATTGTAGAATA
1 TACCACAAAGGCATTACAGAATA
* ** *
32628976 TGCCACAAATACATTACAAAATA
1 TACCACAAAGGCATTACAGAATA
** *
32628999 CGCCATAAAGGCATTACAGAATA
1 TACCACAAAGGCATTACAGAATA
*
32629022 TGCCACAAAGGCATTACAGAATA
1 TACCACAAAGGCATTACAGAATA
* * * *
32629045 CACCATAATGGCATTACAAAATA
1 TACCACAAAGGCATTACAGAATA
32629068 TACCACAAAGGCAT
1 TACCACAAAGGCAT
32629082 CTCAAGTAAC
Statistics
Matches: 123, Mismatches: 29, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 123 1.00
ACGTcount: A:0.46, C:0.22, G:0.14, T:0.19
Consensus pattern (23 bp):
TACCACAAAGGCATTACAGAATA
Found at i:32629043 original size:69 final size:69
Alignment explanation
Indices: 32628909--32629080 Score: 182
Period size: 69 Copynumber: 2.5 Consensus size: 69
32628899 ACAAAACTTA
* * ** * **
32628909 CCACAAAGACATTGCAGAATACACCACAAAGGCACTGTAGAATATGCCACAAAGATATTGTAGAA
1 CCACAAAGACATTACAAAATACACCACAAAGGCACTACAGAATATGCCACAAAGACATTACAGAA
32628974 TATG
66 TATG
* * * * *
32628978 CCACAAATACATTACAAAATACGCCATAAAGGCATTACAGAATATGCCACAAAGGCATTACAGAA
1 CCACAAAGACATTACAAAATACACCACAAAGGCACTACAGAATATGCCACAAAGACATTACAGAA
**
32629043 TACA
66 TATG
* * * *
32629047 CCATAATGGCATTACAAAATATACCACAAAGGCA
1 CCACAAAGACATTACAAAATACACCACAAAGGCA
32629081 TCTCAAGTAA
Statistics
Matches: 82, Mismatches: 21, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
69 82 1.00
ACGTcount: A:0.46, C:0.22, G:0.14, T:0.18
Consensus pattern (69 bp):
CCACAAAGACATTACAAAATACACCACAAAGGCACTACAGAATATGCCACAAAGACATTACAGAA
TATG
Found at i:32631467 original size:23 final size:24
Alignment explanation
Indices: 32631439--32631495 Score: 64
Period size: 23 Copynumber: 2.4 Consensus size: 24
32631429 AACGAATGGA
32631439 AAAAAAGAAAAAAAAAAGG-AGAG
1 AAAAAAGAAAAAAAAAAGGAAGAG
* * *
32631462 ATAAAAG-ATAAGAAAAGGAAGAG
1 AAAAAAGAAAAAAAAAAGGAAGAG
32631485 AAAGAAAGAAA
1 AAA-AAAGAAA
32631496 TATATCATTG
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
22 9 0.35
23 12 0.46
24 4 0.15
25 1 0.04
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.04
Consensus pattern (24 bp):
AAAAAAGAAAAAAAAAAGGAAGAG
Found at i:32634907 original size:82 final size:83
Alignment explanation
Indices: 32634766--32634917 Score: 243
Period size: 82 Copynumber: 1.8 Consensus size: 83
32634756 TTTATATCTA
* * * * *
32634766 TAATGATATAATTTATTACTACGTTCTCATATCCTTCTTCAAAGAATATTAACAGAAACAAAATA
1 TAATGATAGAATTCATTACTACATTCTCATATCATTCCTCAAAGAATATTAACAGAAACAAAATA
32634831 TTTGGATATTTTCTACTG
66 TTTGGATATTTTCTACTG
*
32634849 TAATGATAGAATTCATTACTACATTTTCATAT-ATTCCTCAAAGAATATTAACAGAAACAAAATA
1 TAATGATAGAATTCATTACTACATTCTCATATCATTCCTCAAAGAATATTAACAGAAACAAAATA
32634913 TTTGG
66 TTTGG
32634918 GCATACGCCA
Statistics
Matches: 63, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
82 35 0.56
83 28 0.44
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.38
Consensus pattern (83 bp):
TAATGATAGAATTCATTACTACATTCTCATATCATTCCTCAAAGAATATTAACAGAAACAAAATA
TTTGGATATTTTCTACTG
Found at i:32636378 original size:194 final size:194
Alignment explanation
Indices: 32636049--32636630 Score: 1164
Period size: 194 Copynumber: 3.0 Consensus size: 194
32636039 CCTTAGGACC
32636049 TTGCCAATTTTAAAATTAAGTAAATTGGTCCCTCTTGGAAGAAAAAGGAATAATTTGCTCCATAA
1 TTGCCAATTTTAAAATTAAGTAAATTGGTCCCTCTTGGAAGAAAAAGGAATAATTTGCTCCATAA
32636114 CTATTTCCATACATGGCATGAGCCAAATTATAATTGGTTAACTTTTAAATAATTTAATAGAACTA
66 CTATTTCCATACATGGCATGAGCCAAATTATAATTGGTTAACTTTTAAATAATTTAATAGAACTA
32636179 AAAATATCATATAAAATTAAAAATATTTAAAAATTATAAAATTTGAAATAATCCTAAATAATCA
131 AAAATATCATATAAAATTAAAAATATTTAAAAATTATAAAATTTGAAATAATCCTAAATAATCA
32636243 TTGCCAATTTTAAAATTAAGTAAATTGGTCCCTCTTGGAAGAAAAAGGAATAATTTGCTCCATAA
1 TTGCCAATTTTAAAATTAAGTAAATTGGTCCCTCTTGGAAGAAAAAGGAATAATTTGCTCCATAA
32636308 CTATTTCCATACATGGCATGAGCCAAATTATAATTGGTTAACTTTTAAATAATTTAATAGAACTA
66 CTATTTCCATACATGGCATGAGCCAAATTATAATTGGTTAACTTTTAAATAATTTAATAGAACTA
32636373 AAAATATCATATAAAATTAAAAATATTTAAAAATTATAAAATTTGAAATAATCCTAAATAATCA
131 AAAATATCATATAAAATTAAAAATATTTAAAAATTATAAAATTTGAAATAATCCTAAATAATCA
32636437 TTGCCAATTTTAAAATTAAGTAAATTGGTCCCTCTTGGAAGAAAAAGGAATAATTTGCTCCATAA
1 TTGCCAATTTTAAAATTAAGTAAATTGGTCCCTCTTGGAAGAAAAAGGAATAATTTGCTCCATAA
32636502 CTATTTCCATACATGGCATGAGCCAAATTATAATTGGTTAACTTTTAAATAATTTAATAGAACTA
66 CTATTTCCATACATGGCATGAGCCAAATTATAATTGGTTAACTTTTAAATAATTTAATAGAACTA
32636567 AAAATATCATATAAAATTAAAAATATTTAAAAATTATAAAATTTGAAATAATCCTAAATAATCA
131 AAAATATCATATAAAATTAAAAATATTTAAAAATTATAAAATTTGAAATAATCCTAAATAATCA
32636631 ATAAAACTTT
Statistics
Matches: 388, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
194 388 1.00
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.34
Consensus pattern (194 bp):
TTGCCAATTTTAAAATTAAGTAAATTGGTCCCTCTTGGAAGAAAAAGGAATAATTTGCTCCATAA
CTATTTCCATACATGGCATGAGCCAAATTATAATTGGTTAACTTTTAAATAATTTAATAGAACTA
AAAATATCATATAAAATTAAAAATATTTAAAAATTATAAAATTTGAAATAATCCTAAATAATCA
Found at i:32641126 original size:50 final size:50
Alignment explanation
Indices: 32641047--32641730 Score: 392
Period size: 50 Copynumber: 13.7 Consensus size: 50
32641037 ACTGCAACCT
** * * * *
32641047 CAGGGAAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCAACTGCAATGC
* * * * * * * *
32641097 CGGGGAAGCAAGATTCACCGTCGTAGCTTCAATCTGCTCCACTACACTGC
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCAACTGCAATGC
* ** * * *
32641147 CAGGGAAAGTAAGATTCGCCGTTGTGGCTTTGATCTGATCCACTAC-ATCGC
1 CAGGG-AAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCAACTGCAAT-GC
* * ** * * * *
32641198 CAGGAAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTTAATTGCAATAC
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCAACTGCAATGC
* * * * * * * *
32641248 CAGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGTACTGC
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCAACTGCAATGC
* * * * ** * *
32641298 CAGGGAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTTAGTTGCAGTGT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCAACTGCAATGC
* * * * * *
32641348 CGGGGAA-CAAGATTCACCGTTGTAGCTTCAATCTGATCCACTAC-ATCGC
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCAACTGCAAT-GC
* * * * * *
32641397 CAGGAAAGTAAGATTCGCCGTTG-CGACTTCAATCTTTTTAATTGCAATAC
1 CAGGGAAGTAAGATTCGCCGTTGTAG-CTTCAATCTGTTCAACTGCAATGC
* * * * * * *
32641447 CAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGTACTGC
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCAACTGCAATGC
* * * * * * *
32641497 CAGGGAAGTGAGATTCGTCGTTGTGGCTTCAATCTCTTTAA-TATCAATGT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCAACT-GCAATGC
* * * * * *
32641547 CGGGGAA-CAAGATTCGCCGTTGTAGCTTCAATCTGATCCATTAC-ATCGC
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCAACTGCAAT-GC
* * ** * * * *
32641596 CAGGAAAGTAAGATTCGTCGTTGCGGCTTCAATCTTTTTAATTGCAATAC
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCAACTGCAATGC
* * ** * * * * *
32641646 CAGGAAAGCAAGATTCATCGTTGTAGCTTTAATCTGCTCCACTGTACTGC
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCAACTGCAATGC
* ** *
32641696 CAGGGAAGTGAGATTTACCGTTGTGGCTTCAATCT
1 CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCT
32641731 CGTTATTGCA
Statistics
Matches: 461, Mismatches: 160, Indels: 26
0.71 0.25 0.04
Matches are distributed among these distances:
48 3 0.01
49 66 0.14
50 346 0.75
51 46 0.10
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (50 bp):
CAGGGAAGTAAGATTCGCCGTTGTAGCTTCAATCTGTTCAACTGCAATGC
Found at i:32641297 original size:151 final size:150
Alignment explanation
Indices: 32641047--32641326 Score: 461
Period size: 151 Copynumber: 1.9 Consensus size: 150
32641037 ACTGCAACCT
* * ** *
32641047 CAGGGAAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGGGGAAGCAAGATT
1 CAGGAAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATACCAGGGAAGCAAGATT
32641112 CACCGTCGTAGCTTCAATCTGCTCCACTACACTGCCAGGGAAAGTAAGATTCGCCGTTGTGGCTT
66 CACCGTCGTAGCTTCAATCTGCTCCACTACACTGCCAGGG-AAGTAAGATTCGCCGTTGTGGCTT
32641177 TGATCTGATCCACTACATCGC
130 TGATCTGATCCACTACATCGC
*
32641198 CAGGAAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTTAATTGCAATACCAGGGAAGCAAGATT
1 CAGGAAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATACCAGGGAAGCAAGATT
* ** *
32641263 CACCGTCGTAGCTTTAATCTGCTCCACTGTACTGCCAGGGAAGTGAGATTCGCCGTTGTGGCTT
66 CACCGTCGTAGCTTCAATCTGCTCCACTACACTGCCAGGGAAGTAAGATTCGCCGTTGTGGCTT
32641327 CAATCTCTTT
Statistics
Matches: 119, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
150 23 0.19
151 96 0.81
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.28
Consensus pattern (150 bp):
CAGGAAAGTAAGATTCACCGTTGCGGCTTCAATCTTTTAAATTGCAATACCAGGGAAGCAAGATT
CACCGTCGTAGCTTCAATCTGCTCCACTACACTGCCAGGGAAGTAAGATTCGCCGTTGTGGCTTT
GATCTGATCCACTACATCGC
Found at i:32641312 original size:100 final size:101
Alignment explanation
Indices: 32641146--32641743 Score: 682
Period size: 100 Copynumber: 6.0 Consensus size: 101
32641136 CACTACACTG
* * * *
32641146 CCAGGGAAAGTAAGATTCGCCGTTGTGGCTTTGATCTGATCCAC-TACATCGCCAGGAAAGTAAG
1 CCAGGG-AAGCAAGATTCACCGTTGTAGCTTTAATCTGATCCACTTACATCGCCAGGAAAGTAAG
* *
32641210 ATTCACCGTTGCGGCTTCAATCTTTTTAATTGCAATA
65 ATTCGCCGTTGCGGCTTCAATCTCTTTAATTGCAATA
* * * *
32641247 CCAGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGTAC-T-GCCAGGGAAGTGAG
1 CCAGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGATCCACT-TACATCGCCAGGAAAGTAAG
* * * *
32641310 ATTCGCCGTTGTGGCTTCAATCTCTTTAGTTGCAGTG
65 ATTCGCCGTTGCGGCTTCAATCTCTTTAATTGCAATA
* * *
32641347 TCGGGGAA-CAAGATTCACCGTTGTAGCTTCAATCTGATCCAC-TACATCGCCAGGAAAGTAAGA
1 CCAGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGATCCACTTACATCGCCAGGAAAGTAAGA
* *
32641410 TTCGCCGTTGCGACTTCAATCTTTTTAATTGCAATA
66 TTCGCCGTTGCGGCTTCAATCTCTTTAATTGCAATA
* * * * *
32641446 CCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTCCACTGTAC-T-GCCAGGGAAGTGAG
1 CCAGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGATCCACT-TACATCGCCAGGAAAGTAAG
* * *
32641509 ATTCGTCGTTGTGGCTTCAATCTCTTTAATAT-CAATG
65 ATTCGCCGTTGCGGCTTCAATCTCTTTAAT-TGCAATA
* * * *
32641546 TCGGGGAA-CAAGATTCGCCGTTGTAGCTTCAATCTGATCCA-TTACATCGCCAGGAAAGTAAGA
1 CCAGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGATCCACTTACATCGCCAGGAAAGTAAGA
* *
32641609 TTCGTCGTTGCGGCTTCAATCTTTTTAATTGCAATA
66 TTCGCCGTTGCGGCTTCAATCTCTTTAATTGCAATA
* * * * *
32641645 CCAGGAAAGCAAGATTCATCGTTGTAGCTTTAATCTGCTCCACTGTAC-T-GCCAGGGAAGTGAG
1 CCAGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGATCCACT-TACATCGCCAGGAAAGTAAG
** * *
32641708 ATTTACCGTTGTGGCTTCAATCTCGTT-ATTGCAATA
65 ATTCGCCGTTGCGGCTTCAATCTCTTTAATTGCAATA
32641744 TCGAAGATGA
Statistics
Matches: 418, Mismatches: 65, Indels: 30
0.81 0.13 0.06
Matches are distributed among these distances:
97 6 0.01
98 4 0.01
99 168 0.40
100 220 0.53
101 11 0.03
102 9 0.02
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (101 bp):
CCAGGGAAGCAAGATTCACCGTTGTAGCTTTAATCTGATCCACTTACATCGCCAGGAAAGTAAGA
TTCGCCGTTGCGGCTTCAATCTCTTTAATTGCAATA
Found at i:32641395 original size:199 final size:198
Alignment explanation
Indices: 32641157--32641742 Score: 985
Period size: 199 Copynumber: 2.9 Consensus size: 198
32641147 CAGGGAAAGT
* ** *
32641157 AAGATTCGCCGTTGTGGCTTTGATCTGATCCACTACATCGCCAGGAAAGTAAGATTCACCGTTGC
1 AAGATTCGCCGTTGTAGCTTCAATCTGATCCACTACATCGCCAGGAAAGTAAGATTCGCCGTTGC
32641222 GGCTTCAATCTTTTTAATTGCAATACCAGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTC
66 GGCTTCAATCTTTTTAATTGCAATACCAGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTC
*
32641287 CACTGTACTGCCAGGGAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTTAGTTGCAGTGTCGGG
131 CACTGTACTGCCAGGGAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTTA-TTGCAATGTCGGG
32641352 GAAC
195 GAAC
*
32641356 AAGATTCACCGTTGTAGCTTCAATCTGATCCACTACATCGCCAGGAAAGTAAGATTCGCCGTTGC
1 AAGATTCGCCGTTGTAGCTTCAATCTGATCCACTACATCGCCAGGAAAGTAAGATTCGCCGTTGC
* *
32641421 GACTTCAATCTTTTTAATTGCAATACCAGGGAAGCAAGATTCGCCGTCGTAGCTTTAATCTGCTC
66 GGCTTCAATCTTTTTAATTGCAATACCAGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTC
*
32641486 CACTGTACTGCCAGGGAAGTGAGATTCGTCGTTGTGGCTTCAATCTCTTTAATAT-CAATGTCGG
131 CACTGTACTGCCAGGGAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTT-AT-TGCAATGTCGG
32641550 GGAAC
194 GGAAC
* *
32641555 AAGATTCGCCGTTGTAGCTTCAATCTGATCCATTACATCGCCAGGAAAGTAAGATTCGTCGTTGC
1 AAGATTCGCCGTTGTAGCTTCAATCTGATCCACTACATCGCCAGGAAAGTAAGATTCGCCGTTGC
* * *
32641620 GGCTTCAATCTTTTTAATTGCAATACCAGGAAAGCAAGATTCATCGTTGTAGCTTTAATCTGCTC
66 GGCTTCAATCTTTTTAATTGCAATACCAGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTC
** *
32641685 CACTGTACTGCCAGGGAAGTGAGATTTACCGTTGTGGCTTCAATCTCGTTATTGCAAT
131 CACTGTACTGCCAGGGAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTTATTGCAAT
32641743 ATCGAAGATG
Statistics
Matches: 363, Mismatches: 21, Indels: 7
0.93 0.05 0.02
Matches are distributed among these distances:
197 1 0.00
198 6 0.02
199 354 0.98
200 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.31
Consensus pattern (198 bp):
AAGATTCGCCGTTGTAGCTTCAATCTGATCCACTACATCGCCAGGAAAGTAAGATTCGCCGTTGC
GGCTTCAATCTTTTTAATTGCAATACCAGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTC
CACTGTACTGCCAGGGAAGTGAGATTCGCCGTTGTGGCTTCAATCTCTTTATTGCAATGTCGGGG
AAC
Found at i:32653009 original size:16 final size:16
Alignment explanation
Indices: 32652988--32653021 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
32652978 TACTTAAAAG
32652988 TTAAAACTAATTGTTA
1 TTAAAACTAATTGTTA
*
32653004 TTAAAATTAATTGTTA
1 TTAAAACTAATTGTTA
32653020 TT
1 TT
32653022 GAGTTTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (16 bp):
TTAAAACTAATTGTTA
Found at i:32653122 original size:25 final size:25
Alignment explanation
Indices: 32653092--32653139 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
32653082 AAGATTACTT
32653092 ATTTGAATTTAATTACAAACAATTA
1 ATTTGAATTTAATTACAAACAATTA
32653117 ATTTGAATTTAATTACAAACAAT
1 ATTTGAATTTAATTACAAACAAT
32653140 CAAATCTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.40
Consensus pattern (25 bp):
ATTTGAATTTAATTACAAACAATTA
Found at i:32653701 original size:48 final size:49
Alignment explanation
Indices: 32653634--32653730 Score: 169
Period size: 48 Copynumber: 2.0 Consensus size: 49
32653624 TAGCCATATG
32653634 TTTGTTGTTAATCATAATAATCACAACAAAATCAAGCACTGAAAATCCC
1 TTTGTTGTTAATCATAATAATCACAACAAAATCAAGCACTGAAAATCCC
* *
32653683 TTTGTTGTT-ATCATAATAATCATAACAAATTCAAGCACTGAAAATCCC
1 TTTGTTGTTAATCATAATAATCACAACAAAATCAAGCACTGAAAATCCC
32653731 AATCTCTAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
48 37 0.80
49 9 0.20
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (49 bp):
TTTGTTGTTAATCATAATAATCACAACAAAATCAAGCACTGAAAATCCC
Found at i:32653866 original size:24 final size:24
Alignment explanation
Indices: 32653839--32653888 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
32653829 ACAAACCATA
32653839 ATATTCATACATTAATCCATCAAC
1 ATATTCATACATTAATCCATCAAC
32653863 ATATTCATACATTAATCCATCAAC
1 ATATTCATACATTAATCCATCAAC
32653887 AT
1 AT
32653889 GTTTAAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.42, C:0.24, G:0.00, T:0.34
Consensus pattern (24 bp):
ATATTCATACATTAATCCATCAAC
Found at i:32655827 original size:27 final size:26
Alignment explanation
Indices: 32655779--32655829 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 26
32655769 TTGAATTAGT
32655779 TTGTTATTCATCATTTGCTTTGTATA
1 TTGTTATTCATCATTTGCTTTGTATA
32655805 TTGTTATTCAATCATATTG-TTTGTA
1 TTGTTATTC-ATCAT-TTGCTTTGTA
32655830 AGAATTTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 9 0.39
27 11 0.48
28 3 0.13
ACGTcount: A:0.22, C:0.10, G:0.12, T:0.57
Consensus pattern (26 bp):
TTGTTATTCATCATTTGCTTTGTATA
Found at i:32657743 original size:25 final size:25
Alignment explanation
Indices: 32657683--32657732 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
32657673 CCAAGCCAAT
*
32657683 AGGCTCTCCCTGTACAACCAACCTA
1 AGGCTCTTCCTGTACAACCAACCTA
32657708 AGGCTCTTCCTGTACAACCAACCTA
1 AGGCTCTTCCTGTACAACCAACCTA
32657733 CGGCCTTTCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.38, G:0.12, T:0.22
Consensus pattern (25 bp):
AGGCTCTTCCTGTACAACCAACCTA
Found at i:32662361 original size:19 final size:20
Alignment explanation
Indices: 32662337--32662380 Score: 63
Period size: 19 Copynumber: 2.2 Consensus size: 20
32662327 TTATGCTATG
32662337 TTTTTGAAATTTTTAAT-AT
1 TTTTTGAAATTTTTAATAAT
* *
32662356 TTTTTGCAATTTTTATTAAT
1 TTTTTGAAATTTTTAATAAT
32662376 TTTTT
1 TTTTT
32662381 ATATTTTAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.68
Consensus pattern (20 bp):
TTTTTGAAATTTTTAATAAT
Found at i:32662521 original size:20 final size:22
Alignment explanation
Indices: 32662489--32662529 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
32662479 CAAAACAAAT
32662489 TATTTTTTAAAATTTT-TTTTA
1 TATTTTTTAAAATTTTCTTTTA
32662510 TATTTTTT-AAATTTTCTTTT
1 TATTTTTTAAAATTTTCTTTT
32662530 GAAATTTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.37
21 12 0.63
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.73
Consensus pattern (22 bp):
TATTTTTTAAAATTTTCTTTTA
Found at i:32662537 original size:21 final size:21
Alignment explanation
Indices: 32662492--32662537 Score: 51
Period size: 20 Copynumber: 2.2 Consensus size: 21
32662482 AACAAATTAT
32662492 TTTTTAAAATTTTTTTTAT-A
1 TTTTTAAAATTTTTTTTATAA
*
32662512 TTTTTTAAATTTTCTTTTGA-AA
1 TTTTTAAAATTTT-TTTT-ATAA
32662534 TTTT
1 TTTT
32662538 ACATACTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
20 12 0.55
21 4 0.18
22 6 0.27
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTTTAAAATTTTTTTTATAA
Found at i:32672726 original size:90 final size:91
Alignment explanation
Indices: 32672612--32672793 Score: 339
Period size: 90 Copynumber: 2.0 Consensus size: 91
32672602 GTGTCTTTTT
*
32672612 TATTTTTAATATTATATATTATATTGATTAAAAATGTTGAAAAAATTATATAAGTAATTCAAAAA
1 TATTTTTAATATTATATATAATATTGATTAAAAATGTTGAAAAAATTATATAAGTAATTCAAAAA
32672677 AGTTTTAAAAAATTTCTTTTATAAAG
66 AGTTTTAAAAAATTTCTTTTATAAAG
*
32672703 TATTTTTAAT-TTATATATAATATTTATTAAAAATGTTGAAAAAATTATATAAGTAATTCAAAAA
1 TATTTTTAATATTATATATAATATTGATTAAAAATGTTGAAAAAATTATATAAGTAATTCAAAAA
32672767 AGTTTTAAAAAATTTCTTTTATAAAG
66 AGTTTTAAAAAATTTCTTTTATAAAG
32672793 T
1 T
32672794 TTTAAAATAT
Statistics
Matches: 89, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
90 79 0.89
91 10 0.11
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (91 bp):
TATTTTTAATATTATATATAATATTGATTAAAAATGTTGAAAAAATTATATAAGTAATTCAAAAA
AGTTTTAAAAAATTTCTTTTATAAAG
Found at i:32676099 original size:14 final size:14
Alignment explanation
Indices: 32676080--32676112 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
32676070 ATCAAGCTAT
32676080 TGAGAGAAGCTAAA
1 TGAGAGAAGCTAAA
32676094 TGAGAGAAGCTAAA
1 TGAGAGAAGCTAAA
32676108 TGAGA
1 TGAGA
32676113 TCCCCATCGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.48, C:0.06, G:0.30, T:0.15
Consensus pattern (14 bp):
TGAGAGAAGCTAAA
Found at i:32680725 original size:25 final size:25
Alignment explanation
Indices: 32680706--32680802 Score: 117
Period size: 25 Copynumber: 3.9 Consensus size: 25
32680696 CGAGCTGTTT
32680706 ATCGGGAAGCTCATAAGAGCCATTA
1 ATCGGGAAGCTCATAAGAGCCATTA
**
32680731 ATCGGGAAGCTCATGCGAGCCAATT-
1 ATCGGGAAGCTCATAAGAGCC-ATTA
**
32680756 ATCAAGAAGCTCA-AGAGAGCCATTA
1 ATCGGGAAGCTCATA-AGAGCCATTA
*
32680781 ATCGGGAAGCTCGTAAGAGCCA
1 ATCGGGAAGCTCATAAGAGCCA
32680803 AATATTAGGA
Statistics
Matches: 59, Mismatches: 9, Indels: 8
0.78 0.12 0.11
Matches are distributed among these distances:
24 3 0.05
25 52 0.88
26 4 0.07
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.18
Consensus pattern (25 bp):
ATCGGGAAGCTCATAAGAGCCATTA
Found at i:32680825 original size:50 final size:50
Alignment explanation
Indices: 32680711--32680825 Score: 151
Period size: 50 Copynumber: 2.3 Consensus size: 50
32680701 TGTTTATCGG
** *
32680711 GAAGCTCATAAGAGCCATTAATCGGGAAGCTCATGCGAGCCAATTATCAA
1 GAAGCTCATAAGAGCCATTAATCGGGAAGCTCATAAGAGCCAAATATCAA
* * *
32680761 GAAGCTCA-AGAGAGCCATTAATCGGGAAGCTCGTAAGAGCCAAATATTAG
1 GAAGCTCATA-AGAGCCATTAATCGGGAAGCTCATAAGAGCCAAATATCAA
*
32680811 GATGCTCATAAGAGC
1 GAAGCTCATAAGAGC
32680826 TGTGGTGTGT
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
49 1 0.02
50 54 0.96
51 1 0.02
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (50 bp):
GAAGCTCATAAGAGCCATTAATCGGGAAGCTCATAAGAGCCAAATATCAA
Found at i:32680917 original size:94 final size:94
Alignment explanation
Indices: 32680800--32680990 Score: 364
Period size: 94 Copynumber: 2.0 Consensus size: 94
32680790 CTCGTAAGAG
* *
32680800 CCAAATATTAGGATGCTCATAAGAGCTGTGGTGTGTTCGCAACATTTGTAGGACCATAACCAATC
1 CCAAATATTAGGATGCTCATAAGAGCTGTGGTGTGTTCGCAACATATGTAGGACCACAACCAATC
32680865 CAGGAACCCTAATGACGTGTCATTTGTAT
66 CAGGAACCCTAATGACGTGTCATTTGTAT
32680894 CCAAATATTAGGATGCTCATAAGAGCTGTGGTGTGTTCGCAACATATGTAGGACCACAACCAATC
1 CCAAATATTAGGATGCTCATAAGAGCTGTGGTGTGTTCGCAACATATGTAGGACCACAACCAATC
32680959 CAGGAACCCTAATGACGTGTCATTTGTAT
66 CAGGAACCCTAATGACGTGTCATTTGTAT
32680988 CCA
1 CCA
32680991 TCGAATTTCT
Statistics
Matches: 95, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
94 95 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (94 bp):
CCAAATATTAGGATGCTCATAAGAGCTGTGGTGTGTTCGCAACATATGTAGGACCACAACCAATC
CAGGAACCCTAATGACGTGTCATTTGTAT
Found at i:32693002 original size:128 final size:129
Alignment explanation
Indices: 32692855--32693112 Score: 509
Period size: 128 Copynumber: 2.0 Consensus size: 129
32692845 TATGAAATTC
32692855 AAATTTTCATTTAACAAATTTTTTTAGTAAAATCATAATTCTTATTTATAAGTATGACAAATTTT
1 AAATTTTCATTTAACAAATTTTTTTAGTAAAATCATAATTCTTATTTATAAGTATGACAAATTTT
32692920 TTTATCAATTAAATTTATTTAATCAAATATTTTAATAAAATTAAAATTGTTATTTATAAATAAG
66 TTTATCAATTAAATTTATTTAATCAAATATTTTAATAAAATTAAAATTGTTATTTATAAATAAG
32692984 AAATTTTCA-TTAACAAATTTTTTTAGTAAAATCATAATTCTTATTTATAAGTATGACAAATTTT
1 AAATTTTCATTTAACAAATTTTTTTAGTAAAATCATAATTCTTATTTATAAGTATGACAAATTTT
32693048 TTTATCAATTAAATTTATTTAATCAAATATTTTAATAAAATTAAAATTGTTATTTATAAATAAG
66 TTTATCAATTAAATTTATTTAATCAAATATTTTAATAAAATTAAAATTGTTATTTATAAATAAG
32693112 A
1 A
32693113 TAAATCTTAT
Statistics
Matches: 129, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
128 120 0.93
129 9 0.07
ACGTcount: A:0.44, C:0.05, G:0.04, T:0.47
Consensus pattern (129 bp):
AAATTTTCATTTAACAAATTTTTTTAGTAAAATCATAATTCTTATTTATAAGTATGACAAATTTT
TTTATCAATTAAATTTATTTAATCAAATATTTTAATAAAATTAAAATTGTTATTTATAAATAAG
Found at i:32695916 original size:31 final size:31
Alignment explanation
Indices: 32695880--32695968 Score: 115
Period size: 31 Copynumber: 3.2 Consensus size: 31
32695870 CAACTATAAT
32695880 TTAATTACATTCAATACATTCATAATGTCCC
1 TTAATTACATTCAATACATTCATAATGTCCC
32695911 TTAATTACATTC-AT--A---AT--T-TCCC
1 TTAATTACATTCAATACATTCATAATGTCCC
32695933 TTAATTACATTCAATACATTCATAATGTCCC
1 TTAATTACATTCAATACATTCATAATGTCCC
32695964 TTAAT
1 TTAAT
32695969 CGAGCCCTTG
Statistics
Matches: 49, Mismatches: 0, Indels: 18
0.73 0.00 0.27
Matches are distributed among these distances:
22 16 0.33
23 3 0.06
25 3 0.06
28 3 0.06
30 3 0.06
31 21 0.43
ACGTcount: A:0.35, C:0.21, G:0.02, T:0.42
Consensus pattern (31 bp):
TTAATTACATTCAATACATTCATAATGTCCC
Found at i:32695919 original size:22 final size:22
Alignment explanation
Indices: 32695894--32695945 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
32695884 TTACATTCAA
32695894 TACATTCATAATGTCCCTTAAT
1 TACATTCATAATGTCCCTTAAT
*
32695916 TACATTCATAATTTCCCTTAAT
1 TACATTCATAATGTCCCTTAAT
32695938 TACATTCA
1 TACATTCA
32695946 ATACATTCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.33, C:0.23, G:0.02, T:0.42
Consensus pattern (22 bp):
TACATTCATAATGTCCCTTAAT
Found at i:32697308 original size:35 final size:36
Alignment explanation
Indices: 32697250--32697325 Score: 118
Period size: 35 Copynumber: 2.1 Consensus size: 36
32697240 AATCCCTCCA
*
32697250 AAACACACCAAATGCTTACAAGAGCTAGTCCAACCG
1 AAACACACCAAATGCTAACAAGAGCTAGTCCAACCG
* *
32697286 AAACACACC-AATGCTAATAAGAGCTAGTCTAACCG
1 AAACACACCAAATGCTAACAAGAGCTAGTCCAACCG
32697321 AAACA
1 AAACA
32697326 TGCCAAACAA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
35 28 0.76
36 9 0.24
ACGTcount: A:0.45, C:0.28, G:0.13, T:0.14
Consensus pattern (36 bp):
AAACACACCAAATGCTAACAAGAGCTAGTCCAACCG
Found at i:32706245 original size:15 final size:15
Alignment explanation
Indices: 32706225--32706258 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
32706215 ACCATGCAAG
*
32706225 CTCTTCAACCTTCTT
1 CTCTTCAACCTTCCT
*
32706240 CTCTTCGACCTTCCT
1 CTCTTCAACCTTCCT
32706255 CTCT
1 CTCT
32706259 AAAACCTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.09, C:0.44, G:0.03, T:0.44
Consensus pattern (15 bp):
CTCTTCAACCTTCCT
Found at i:32713488 original size:57 final size:56
Alignment explanation
Indices: 32713372--32713505 Score: 153
Period size: 57 Copynumber: 2.3 Consensus size: 56
32713362 AATAAGATTA
* * *
32713372 TTAATAAAAATAATAAATAATTTAATCATATTTTAACATAATTATTATTAAATATAAT
1 TTAAT-AAAATAATATATAATTTAATAAAATTTTAACATAATTATTATT-AATATAAT
* *
32713430 TTAATAAAATAATATATAATTTAATAAAATTCTTAATATAATTATTCTT-ATATGAAT
1 TTAATAAAATAATATATAATTTAATAAAATT-TTAACATAATTATTATTAATAT-AAT
* *
32713487 TTACTAAAATCATAATATA
1 TTAATAAAATAAT-ATATA
32713506 TAATACTATA
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
56 4 0.06
57 37 0.56
58 25 0.38
ACGTcount: A:0.51, C:0.04, G:0.01, T:0.43
Consensus pattern (56 bp):
TTAATAAAATAATATATAATTTAATAAAATTTTAACATAATTATTATTAATATAAT
Found at i:32726250 original size:11 final size:11
Alignment explanation
Indices: 32726234--32726258 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
32726224 TATAGTATAA
32726234 ATATTTAAAAT
1 ATATTTAAAAT
32726245 ATATTTAAAAT
1 ATATTTAAAAT
32726256 ATA
1 ATA
32726259 AAACCTCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
ATATTTAAAAT
Found at i:32726890 original size:20 final size:19
Alignment explanation
Indices: 32726832--32726903 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 19
32726822 AAAAATATAA
32726832 ATTTTAGAATTTTTATAAA-T
1 ATTTT-GAATTTTTA-AAATT
* *
32726852 ATTTTGAATCTTAAAAATT
1 ATTTTGAATTTTTAAAATT
32726871 ATTTTGAATTTTTGAAAATT
1 ATTTTGAATTTTT-AAAATT
*
32726891 ATTTTGACTTTTT
1 ATTTTGAATTTTT
32726904 TTTTTTTTTG
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
18 3 0.07
19 19 0.42
20 23 0.51
ACGTcount: A:0.35, C:0.03, G:0.07, T:0.56
Consensus pattern (19 bp):
ATTTTGAATTTTTAAAATT
Found at i:32728468 original size:60 final size:60
Alignment explanation
Indices: 32728402--32728526 Score: 142
Period size: 60 Copynumber: 2.1 Consensus size: 60
32728392 TTTTTAAAAA
* * ** * * * * *
32728402 TTTTTAGAGTTAGGACTAAGTTGATAGATTTTTTAAATGTCGAGGGCCAAATTTATTGAT
1 TTTTTAGAATTAGAACTAAAATGACAAATTTTGTAAATATCGAGGGCCAAATTTATTAAT
* * *
32728462 TTTTTAGAATTAGAACTAAAATGACAAATTTTGTAAATATTGAGGGCTAAATTTGTTAAT
1 TTTTTAGAATTAGAACTAAAATGACAAATTTTGTAAATATCGAGGGCCAAATTTATTAAT
32728522 TTTTT
1 TTTTT
32728527 TATACTTAGG
Statistics
Matches: 53, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
60 53 1.00
ACGTcount: A:0.34, C:0.06, G:0.18, T:0.43
Consensus pattern (60 bp):
TTTTTAGAATTAGAACTAAAATGACAAATTTTGTAAATATCGAGGGCCAAATTTATTAAT
Found at i:32729192 original size:91 final size:92
Alignment explanation
Indices: 32729062--32729247 Score: 356
Period size: 91 Copynumber: 2.0 Consensus size: 92
32729052 AAATTTTACA
*
32729062 AATAATATTATTGAAAAAGATTAAAACATTTTTAATTAAAAAAATATTTTTCAATTATCTTAATT
1 AATAATATTATTGAAAAAAATTAAAACATTTTTAATTAAAAAAATATTTTTCAATTATCTTAATT
32729127 TAATTATTAAACCCTTTATCACCATCC
66 TAATTATTAAACCCTTTATCACCATCC
32729154 AATAATATTA-TGAAAAAAATTAAAACATTTTTAATTAAAAAAATATTTTTCAATTATCTTAATT
1 AATAATATTATTGAAAAAAATTAAAACATTTTTAATTAAAAAAATATTTTTCAATTATCTTAATT
32729218 TAATTATTAAACCCTTTATCACCATCC
66 TAATTATTAAACCCTTTATCACCATCC
32729245 AAT
1 AAT
32729248 TTCTTTTGTT
Statistics
Matches: 93, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
91 83 0.89
92 10 0.11
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.41
Consensus pattern (92 bp):
AATAATATTATTGAAAAAAATTAAAACATTTTTAATTAAAAAAATATTTTTCAATTATCTTAATT
TAATTATTAAACCCTTTATCACCATCC
Found at i:32729621 original size:15 final size:16
Alignment explanation
Indices: 32729601--32729633 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
32729591 ATAGGGATAT
32729601 AATAAA-ATATTAAAA
1 AATAAATATATTAAAA
*
32729616 AATAAATATTTTAAAA
1 AATAAATATATTAAAA
32729632 AA
1 AA
32729634 AGAGACATGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (16 bp):
AATAAATATATTAAAA
Found at i:32729809 original size:192 final size:192
Alignment explanation
Indices: 32729296--32729826 Score: 557
Period size: 192 Copynumber: 2.7 Consensus size: 192
32729286 AAAGTGCACA
* * * * * * * *
32729296 CAAGTATACTAAATATTAACCTTTAAGAGAAATTATTTGGTATACTGTTAATGGAGTTTTTAGAC
1 CAAGTGTACAAAATACTAACCCTTAAGAGAAATTATTTGGTACACTGCTAGTGGAGTTTTTAAAC
* * * * *
32729361 TCTACAAGTAAAGTCAGAGGTTGACAAGTGTCTTATAGAGATATAGTAAAATATTAAAAATAAAT
66 TC-ACAAGTAAGGTCAGGGGTTGACAAGTGTCTTATAAAGGTATAGTAAAATATAAAAAATAAAT
* *
32729426 ATTTAAAAGAAGGAGACACATGCCGATTTTTTAAGGTTGTTTGTGAAATAAAAAAAGTAGTACAT
130 ATTTAAAA-AA--AGACACATGCCAATTTTTCAAGGTTGTTTGTGAAATAAAAAAAG-AGTACAT
32729491 TG
191 TG
** * * * * ** *
32729493 CAAGTGTATTAAATACTAACCCTTAA-AGAAATTATATGGTACATTACCAGTAAAGGTTTTAAAT
1 CAAGTGTACAAAATACTAACCCTTAAGAGAAATTATTTGGTACACTGCTAGTGGAGTTTTTAAA-
* * * * * * * *
32729557 TTCACAAGCAAGATAAGGGATTGATAAGTGTCTTAT-AGGGATATAATAAAATATTAAAAAATAA
65 CTCACAAGTAAGGTCAGGGGTTGACAAGTGTCTTATAAAGG-TATAGTAAAATA-TAAAAAATAA
* * *
32729621 ATATTTTAAAAAAAGAGACATGCTAATTTTTCAAGGTTGTTTGTGGAATAAAAAAA-AGTACATT
128 ATA-TTTAAAAAAAGACACATGCCAATTTTTCAAGGTTGTTTGTGAAATAAAAAAAGAGTACATT
32729685 G
192 G
* * *
32729686 CCA-TGTACAAAATACTAACCCTTAAGGGAAATTATTTGATACACTGCTAGTGGAGTTTTTAAAC
1 CAAGTGTACAAAATACTAACCCTTAAGAGAAATTATTTGGTACACTGCTAGTGGAGTTTTTAAAC
* * * *
32729750 TCCCAAGTAGGGTCAGGGGTTGACAAGTGTTTTATAAAGGCATAGTAAAATAGTAAAAAATAAAT
66 TCACAAGTAAGGTCAGGGGTTGACAAGTGTCTTATAAAGGTATAGTAAAATA-TAAAAAATAAAT
32729815 AATTTAAAAAAA
130 -ATTTAAAAAAA
32729827 TACATATAAA
Statistics
Matches: 269, Mismatches: 58, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
192 79 0.29
193 43 0.16
195 39 0.14
196 63 0.23
197 38 0.14
198 7 0.03
ACGTcount: A:0.43, C:0.09, G:0.17, T:0.31
Consensus pattern (192 bp):
CAAGTGTACAAAATACTAACCCTTAAGAGAAATTATTTGGTACACTGCTAGTGGAGTTTTTAAAC
TCACAAGTAAGGTCAGGGGTTGACAAGTGTCTTATAAAGGTATAGTAAAATATAAAAAATAAATA
TTTAAAAAAAGACACATGCCAATTTTTCAAGGTTGTTTGTGAAATAAAAAAAGAGTACATTG
Found at i:32739973 original size:20 final size:20
Alignment explanation
Indices: 32739948--32739997 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
32739938 GCCGTGTGGT
**
32739948 TAGGCCGTGTGACATGGCCC
1 TAGGCCGTGTGACATGAACC
*
32739968 TAGGCCGTGTGACATGAACT
1 TAGGCCGTGTGACATGAACC
32739988 TAGGCCGTGT
1 TAGGCCGTGT
32739998 AACTTTTGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.18, C:0.24, G:0.34, T:0.24
Consensus pattern (20 bp):
TAGGCCGTGTGACATGAACC
Found at i:32740120 original size:25 final size:25
Alignment explanation
Indices: 32740074--32740122 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
32740064 AGGGTTACAC
* * *
32740074 GACCATGTTACACGCCCTTGTGCCT
1 GACCATGTCACACACCCGTGTGCCT
*
32740099 GACCATGTCACATACCCGTGTGCC
1 GACCATGTCACACACCCGTGTGCC
32740123 AGCTTGTGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.18, C:0.37, G:0.20, T:0.24
Consensus pattern (25 bp):
GACCATGTCACACACCCGTGTGCCT
Found at i:32741284 original size:26 final size:26
Alignment explanation
Indices: 32741224--32741285 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
32741214 TACATCGTTG
* * *
32741224 CTCACATGAGCTGTCAAATGGGCTTA
1 CTCACACGAGTTGTCAAATGGGCCTA
* *
32741250 TTCACACGAGTTGTCAAATGGGCCTG
1 CTCACACGAGTTGTCAAATGGGCCTA
*
32741276 CTCATACGAG
1 CTCACACGAG
32741286 CTGTGGGTCA
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (26 bp):
CTCACACGAGTTGTCAAATGGGCCTA
Found at i:32744037 original size:69 final size:71
Alignment explanation
Indices: 32743919--32744114 Score: 247
Period size: 69 Copynumber: 2.8 Consensus size: 71
32743909 GGGTTGTGGT
* * *
32743919 ATTGAACCTACGAGCCTTAGAATGATAGCTGGGAGCTTTTAACTATCGCTAACTGTTTGGA-GGC
1 ATTGAACCTATGAGCCTTAGAATGATAGCTAGGAGCTTTTAACTCTCGCTAACTGTTTGGAGGGC
32743983 TGCA-A
66 TGCAGA
* * * *
32743988 TATT-AACCTGTGAGCCTTAGAATGATAGCTAGGAGCTTTTAACTCTCGCTAAGTATTTTGAGGG
1 -ATTGAACCTATGAGCCTTAGAATGATAGCTAGGAGCTTTTAACTCTCGCTAACTGTTTGGAGGG
32744052 CTGCAGA
65 CTGCAGA
* * **
32744059 ATTGAACCTATGAGCCTTAGAATGACAG-TTGAGAGCTTTTAACTCTTACTAACTGT
1 ATTGAACCTATGAGCCTTAGAATGATAGCTAG-GAGCTTTTAACTCTCGCTAACTGT
32744115 ATGGGTTTTT
Statistics
Matches: 108, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
69 50 0.46
70 15 0.14
71 43 0.40
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (71 bp):
ATTGAACCTATGAGCCTTAGAATGATAGCTAGGAGCTTTTAACTCTCGCTAACTGTTTGGAGGGC
TGCAGA
Found at i:32758624 original size:31 final size:31
Alignment explanation
Indices: 32758335--32758615 Score: 438
Period size: 31 Copynumber: 9.1 Consensus size: 31
32758325 ATCCAATGAT
* *
32758335 CAAATC-AATTCGGCAATATATATCCATATA
1 CAAATCAAATTCGGCAATGTATAACCATATA
* * *
32758365 CAAATCAAATTCAGCAATGTATATCTATATA
1 CAAATCAAATTCGGCAATGTATAACCATATA
* * *
32758396 CAAATCAAATTCGGCAATGAATATCCACATA
1 CAAATCAAATTCGGCAATGTATAACCATATA
32758427 CAAATCAAATTCGGCAATGTATAACCATATA
1 CAAATCAAATTCGGCAATGTATAACCATATA
32758458 CAAATCAAATTCGGCAATGTATAACCATATA
1 CAAATCAAATTCGGCAATGTATAACCATATA
32758489 CAAATCAAATTCGGCAATGTATAACCATATA
1 CAAATCAAATTCGGCAATGTATAACCATATA
32758520 CAAATCAAATTCGGCAATGTATAACCATATA
1 CAAATCAAATTCGGCAATGTATAACCATATA
* * *
32758551 CAAATCAAATTCGGCAATTTATATCTATATA
1 CAAATCAAATTCGGCAATGTATAACCATATA
*
32758582 CAAATCAAATTCGGCAATGTATAAAACATATA
1 CAAATCAAATTCGGCAATGTAT-AACCATATA
32758614 CA
1 CA
32758616 TTTAAATTCA
Statistics
Matches: 232, Mismatches: 17, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
30 6 0.03
31 218 0.94
32 8 0.03
ACGTcount: A:0.45, C:0.19, G:0.09, T:0.27
Consensus pattern (31 bp):
CAAATCAAATTCGGCAATGTATAACCATATA
Found at i:32759144 original size:205 final size:206
Alignment explanation
Indices: 32758781--32759197 Score: 818
Period size: 205 Copynumber: 2.0 Consensus size: 206
32758771 ATATAATCAT
32758781 TCAATTCAGTCCAAAAACATATATTTAAGCTAATATGCACTTTGGCCCTAAACTTTCATATTTCT
1 TCAATTCAGTCCAAAAACATATATTTAAGCTAATATGCACTTTGGCCCTAAACTTTCATATTTCT
32758846 TACAATTTAGTCCCTATTTCACAAATACATAAAATTCATAAAAATTCAACAAGACCCATGCTTGG
66 TACAATTTAGTCCCTATTTCACAAATACATAAAATTCATAAAAATTCAACAAGACCCATGCTTGG
32758911 CCAAATTACCATAGTGCCCCTAGAAGCCCATATTTCACATTAATTCACACTTTTAACCCCACATT
131 CCAAATTACCATAGTGCCCCTAGAAGCCCATATTTCACATTAATTCACACTTTTAACCCCACATT
32758976 TTCATCTTTTC
196 TTCATCTTTTC
32758987 TCAATTCAGT-CAAAAACATATATTTAAGCTAATATGCACTTTGGCCCTAAACTTTCATATTTCT
1 TCAATTCAGTCCAAAAACATATATTTAAGCTAATATGCACTTTGGCCCTAAACTTTCATATTTCT
32759051 TACAATTTAGTCCCTATTTCACAAATACATAAAATTCATAAAAATTCAACAAGACCCATGCTTGG
66 TACAATTTAGTCCCTATTTCACAAATACATAAAATTCATAAAAATTCAACAAGACCCATGCTTGG
32759116 CCAAATTACCATAGTGCCCCTAGAAGCCCATATTTCACATTAATTCACACTTTTAACCCCACATT
131 CCAAATTACCATAGTGCCCCTAGAAGCCCATATTTCACATTAATTCACACTTTTAACCCCACATT
32759181 TTCATCTTTTC
196 TTCATCTTTTC
*
32759192 ACAATT
1 TCAATT
32759198 TAATACCTAA
Statistics
Matches: 210, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
205 200 0.95
206 10 0.05
ACGTcount: A:0.35, C:0.25, G:0.07, T:0.34
Consensus pattern (206 bp):
TCAATTCAGTCCAAAAACATATATTTAAGCTAATATGCACTTTGGCCCTAAACTTTCATATTTCT
TACAATTTAGTCCCTATTTCACAAATACATAAAATTCATAAAAATTCAACAAGACCCATGCTTGG
CCAAATTACCATAGTGCCCCTAGAAGCCCATATTTCACATTAATTCACACTTTTAACCCCACATT
TTCATCTTTTC
Found at i:32762390 original size:27 final size:27
Alignment explanation
Indices: 32762367--32762458 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 27
32762357 AAGGGTATAA
*
32762367 CGGTCATTTTACCCTATGGTGGTATTT
1 CGGTCATTTTACCCTATGGGGGTATTT
** *
32762394 TAGTCATTTTACCCTACGGGGGTATTT
1 CGGTCATTTTACCCTATGGGGGTATTT
* *
32762421 CGGTCATTTTACTCTATGAGGGTATTT
1 CGGTCATTTTACCCTATGGGGGTATTT
*
32762448 TGGTCATTTTA
1 CGGTCATTTTA
32762459 TTGACCTCAC
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.17, C:0.16, G:0.22, T:0.45
Consensus pattern (27 bp):
CGGTCATTTTACCCTATGGGGGTATTT
Found at i:32771571 original size:21 final size:22
Alignment explanation
Indices: 32771547--32771589 Score: 54
Period size: 24 Copynumber: 2.0 Consensus size: 22
32771537 TATCGGACAA
32771547 TTTAT-AA-ATAATATACAAATG
1 TTTATCAACATAATATA-AAATG
32771568 TTTATCAACTATAATATAAAAT
1 TTTATCAAC-ATAATATAAAAT
32771590 AATCTTAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 5 0.26
22 2 0.11
23 4 0.21
24 8 0.42
ACGTcount: A:0.51, C:0.07, G:0.02, T:0.40
Consensus pattern (22 bp):
TTTATCAACATAATATAAAATG
Found at i:32772969 original size:31 final size:31
Alignment explanation
Indices: 32772940--32773104 Score: 231
Period size: 31 Copynumber: 5.3 Consensus size: 31
32772930 AATCAATTTA
* * *
32772940 GCAATATATATCCATATACGAATCAAATTTG
1 GCAATGTATATCCATATACAAATCAAATTCG
* *
32772971 ACAATGTATATCTATATACAAATCAAATTCG
1 GCAATGTATATCCATATACAAATCAAATTCG
*
32773002 GCAATGAATATCCATATACAAATCAAATTCG
1 GCAATGTATATCCATATACAAATCAAATTCG
* * *
32773033 GTAATGTATAACCATATACAAATAAAATTCG
1 GCAATGTATATCCATATACAAATCAAATTCG
* *
32773064 GCAATGTATATCTATATACAAATCAAATTCA
1 GCAATGTATATCCATATACAAATCAAATTCG
32773095 GCAATGTATA
1 GCAATGTATA
32773105 AAACATATAC
Statistics
Matches: 117, Mismatches: 17, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 117 1.00
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.30
Consensus pattern (31 bp):
GCAATGTATATCCATATACAAATCAAATTCG
Found at i:32776972 original size:34 final size:34
Alignment explanation
Indices: 32776929--32776999 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
32776919 AAATAAAATT
* *
32776929 TTTATTTGTTAAAAATTAAACTTATCCTTCATGA
1 TTTATTTGTTAAAAATCAAACTTATCCTCCATGA
32776963 TTTATTTGTTAAAAATCAAACTTATCCTCCATGA
1 TTTATTTGTTAAAAATCAAACTTATCCTCCATGA
32776997 TTT
1 TTT
32777000 TTCATTCGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.34, C:0.14, G:0.06, T:0.46
Consensus pattern (34 bp):
TTTATTTGTTAAAAATCAAACTTATCCTCCATGA
Found at i:32778702 original size:77 final size:77
Alignment explanation
Indices: 32778605--32778761 Score: 251
Period size: 77 Copynumber: 2.0 Consensus size: 77
32778595 CAATTTTGAT
* * * *
32778605 ATTTTAGATCTCAGTTTTATCCATACATTTGATTTATAATGAACTCCATGCATGACTTGACTATT
1 ATTTTAAATATCAGTTTTATCCATACATTTGATTTACAATAAACTCCATGCATGACTTGACTATT
32778670 TATTTCTAATTA
66 TATTTCTAATTA
* *
32778682 ATTTTAAATATCAGTTTTATCCATACATTTTATTTGCAATAAACTCCATGCATGACTTGACTATT
1 ATTTTAAATATCAGTTTTATCCATACATTTGATTTACAATAAACTCCATGCATGACTTGACTATT
*
32778747 TCTTTCTAATTA
66 TATTTCTAATTA
32778759 ATT
1 ATT
32778762 GATGATCCAA
Statistics
Matches: 73, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
77 73 1.00
ACGTcount: A:0.31, C:0.16, G:0.08, T:0.46
Consensus pattern (77 bp):
ATTTTAAATATCAGTTTTATCCATACATTTGATTTACAATAAACTCCATGCATGACTTGACTATT
TATTTCTAATTA
Found at i:32779031 original size:23 final size:23
Alignment explanation
Indices: 32779001--32779046 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
32778991 AAAATGATAA
32779001 ACGATTTGTACTTATCAATCATT
1 ACGATTTGTACTTATCAATCATT
32779024 ACGATTTGTACTTATCAATCATT
1 ACGATTTGTACTTATCAATCATT
32779047 CCTTGAAGCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.09, T:0.43
Consensus pattern (23 bp):
ACGATTTGTACTTATCAATCATT
Found at i:32782647 original size:22 final size:23
Alignment explanation
Indices: 32782609--32782652 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
32782599 TCTTCTCTAT
*
32782609 TTTTCTTCTTTCTTTTG-TTTTC
1 TTTTCTCCTTTCTTTTGATTTTC
32782631 TTTTCTCCTCTTC-TTTGATTTT
1 TTTTCTCCT-TTCTTTTGATTTT
32782653 TGCTTACTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.02, C:0.20, G:0.05, T:0.73
Consensus pattern (23 bp):
TTTTCTCCTTTCTTTTGATTTTC
Found at i:32787726 original size:27 final size:27
Alignment explanation
Indices: 32787655--32787726 Score: 74
Period size: 27 Copynumber: 2.6 Consensus size: 27
32787645 TATATATATT
* *
32787655 TATATATTATATAATAAAACCCACGCATA
1 TATATATTATAT-A-ACAACCCACGCAAA
* *
32787684 TA-ATATATATACAACAACCCATGCAAA
1 TATATAT-TATATAACAACCCACGCAAA
32787711 TATATATTATATAACA
1 TATATATTATATAACA
32787727 CAACACCCAC
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
27 21 0.58
28 9 0.25
29 6 0.17
ACGTcount: A:0.50, C:0.17, G:0.03, T:0.31
Consensus pattern (27 bp):
TATATATTATATAACAACCCACGCAAA
Found at i:32787741 original size:29 final size:29
Alignment explanation
Indices: 32787655--32787747 Score: 88
Period size: 29 Copynumber: 3.3 Consensus size: 29
32787645 TATATATATT
**
32787655 TATATATTATATAATA-AA-ACCCACGCA
1 TATATATTATATAATACAACACCCACAAA
32787682 TATA-A-TATAT-ATACAACAACCCATGCAAA
1 TATATATTATATAATACAAC-ACCCA--CAAA
* *
32787711 TATATATTATATAACACAACACCCACTAA
1 TATATATTATATAATACAACACCCACAAA
32787740 TATATATT
1 TATATATT
32787748 TTGTATACAA
Statistics
Matches: 54, Mismatches: 4, Indels: 14
0.75 0.06 0.19
Matches are distributed among these distances:
24 3 0.06
25 7 0.13
26 1 0.02
27 9 0.17
29 17 0.31
30 1 0.02
31 10 0.19
32 6 0.11
ACGTcount: A:0.48, C:0.19, G:0.02, T:0.30
Consensus pattern (29 bp):
TATATATTATATAATACAACACCCACAAA
Found at i:32788318 original size:18 final size:19
Alignment explanation
Indices: 32788295--32788336 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
32788285 TGTTTTAAAG
32788295 TTTATAG-T-TTAATTTTAT
1 TTTATAGATATTAATTTT-T
32788313 TTTATAGATATTAATTTTT
1 TTTATAGATATTAATTTTT
32788332 TTTAT
1 TTTAT
32788337 CTTTTAAGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 7 0.32
19 7 0.32
20 8 0.36
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.67
Consensus pattern (19 bp):
TTTATAGATATTAATTTTT
Found at i:32790806 original size:18 final size:19
Alignment explanation
Indices: 32790785--32790849 Score: 59
Period size: 18 Copynumber: 3.6 Consensus size: 19
32790775 TTTTTCTAGT
32790785 TTATTTTTATTT-ATTAAA
1 TTATTTTTATTTAATTAAA
*
32790803 TTATTTTTCTTTAATT-AA
1 TTATTTTTATTTAATTAAA
*
32790821 TT-TTTATT-TTTAAATT-TA
1 TTATTT-TTATTT-AATTAAA
32790839 TTATTTTTATT
1 TTATTTTTATT
32790850 ATCTCGGCCC
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
17 6 0.15
18 26 0.65
19 8 0.20
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TTATTTTTATTTAATTAAA
Found at i:32790809 original size:33 final size:32
Alignment explanation
Indices: 32790772--32790847 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 32
32790762 AAATTTTAAG
* *
32790772 ATTTTTTTCTAGTTTATTTTTATTTATTAAA-TT
1 ATTTTTTT-TAATTAATTTTTATTT-TTAAATTT
32790805 ATTTTTCTTTAATTAATTTTTATTTTTAAATTT
1 ATTTTT-TTTAATTAATTTTTATTTTTAAATTT
*
32790838 ATTATTTTTA
1 ATTTTTTTTA
32790848 TTATCTCGGC
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
32 9 0.24
33 27 0.71
34 2 0.05
ACGTcount: A:0.26, C:0.03, G:0.01, T:0.70
Consensus pattern (32 bp):
ATTTTTTTTAATTAATTTTTATTTTTAAATTT
Found at i:32790842 original size:15 final size:14
Alignment explanation
Indices: 32790787--32790847 Score: 52
Period size: 15 Copynumber: 3.9 Consensus size: 14
32790777 TTTCTAGTTT
32790787 ATTTTTATTTATTAA
1 ATTTTTATTT-TTAA
32790802 ATTATTT-TTCTTTAATTA
1 ATT-TTTATT-TTT-A--A
32790820 ATTTTTATTTTTAA
1 ATTTTTATTTTTAA
32790834 ATTTATTATTTTTA
1 ATTT-TTATTTTTA
32790848 TTATCTCGGC
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
14 5 0.13
15 16 0.41
16 6 0.15
17 6 0.15
18 6 0.15
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.69
Consensus pattern (14 bp):
ATTTTTATTTTTAA
Found at i:32807964 original size:135 final size:135
Alignment explanation
Indices: 32807721--32808128 Score: 782
Period size: 135 Copynumber: 3.0 Consensus size: 135
32807711 TTTTTCTCGC
32807721 CATGTTAAATATTCTTTTACTATATACAATTTCAAAGTAAAATGTCATTATATTTTTAAAAAATT
1 CATGTTAAATATTCTTTTACTATATACAATTTCAAAGTAAAATGTCATTATATTTTTAAAAAATT
*
32807786 CAAATTTAAATATAAATTTAGCCCTAATGTTTATTTAACGTTGATGTGGTAGCCCACGTAACTAT
66 CAAATTTAAATATAAATTTAGCCCTAATGTTTATTTAACGTTGATGTGGTAGCCCACGTAACTGT
32807851 TTATG
131 TTATG
32807856 CATGTTAAATATTCTTTTACTATATACAATTTCAAAGTAAAATGTCATTATATTTTTAAAAAATT
1 CATGTTAAATATTCTTTTACTATATACAATTTCAAAGTAAAATGTCATTATATTTTTAAAAAATT
*
32807921 CAAATTTAAATATAAATTTAGCCCTAATGTTTATTTAATGTTGATGTGGTAGCCCACGTAACTGT
66 CAAATTTAAATATAAATTTAGCCCTAATGTTTATTTAACGTTGATGTGGTAGCCCACGTAACTGT
32807986 TTATG
131 TTATG
32807991 CATGTTAAATATTCTTTTACTATATACAATTTCAAAGTAAAATGTCATTATATTTTTAAAAAATT
1 CATGTTAAATATTCTTTTACTATATACAATTTCAAAGTAAAATGTCATTATATTTTTAAAAAATT
32808056 CAAATTTAAAATATAAA-TTAGCCCTAATGTTTATTTAACGTTGATGTGGTAGCCCACGTAACTG
66 CAAATTT-AAATATAAATTTAGCCCTAATGTTTATTTAACGTTGATGTGGTAGCCCACGTAACTG
32808120 TTTATG
130 TTTATG
32808126 CAT
1 CAT
32808129 ATTTCACTGT
Statistics
Matches: 269, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
135 260 0.97
136 9 0.03
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (135 bp):
CATGTTAAATATTCTTTTACTATATACAATTTCAAAGTAAAATGTCATTATATTTTTAAAAAATT
CAAATTTAAATATAAATTTAGCCCTAATGTTTATTTAACGTTGATGTGGTAGCCCACGTAACTGT
TTATG
Found at i:32812909 original size:26 final size:29
Alignment explanation
Indices: 32812880--32812945 Score: 75
Period size: 28 Copynumber: 2.4 Consensus size: 29
32812870 ATTACATTGC
*
32812880 CCTCTGTTCT-GT-TAGCACATCGGTGT-
1 CCTCTGTTCTAATATAGCACATCGGTGTG
**
32812906 CCTCCATTCTAATATAGCACATCGGTGTG
1 CCTCTGTTCTAATATAGCACATCGGTGTG
*
32812935 ACTCTGTTCTA
1 CCTCTGTTCTA
32812946 TTAATGCACT
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
26 8 0.26
27 1 0.03
28 14 0.45
29 8 0.26
ACGTcount: A:0.18, C:0.27, G:0.18, T:0.36
Consensus pattern (29 bp):
CCTCTGTTCTAATATAGCACATCGGTGTG
Found at i:32812954 original size:29 final size:27
Alignment explanation
Indices: 32812881--32812954 Score: 69
Period size: 29 Copynumber: 2.7 Consensus size: 27
32812871 TTACATTGCC
* *
32812881 CTCTGTTCTGTTA-GCACATCGGTGTC
1 CTCTGTTCTATTATGCACATCGGTGTA
** *
32812907 CTCCATTCTAATATAGCACATCGGTGTGA
1 CTCTGTTCTATTAT-GCACATCGGTGT-A
32812936 CTCTGTTCTATTAATGCAC
1 CTCTGTTCTATT-ATGCAC
32812955 TTTGGTGCAA
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
26 9 0.25
28 12 0.33
29 13 0.36
30 2 0.06
ACGTcount: A:0.20, C:0.26, G:0.18, T:0.36
Consensus pattern (27 bp):
CTCTGTTCTATTATGCACATCGGTGTA
Found at i:32829231 original size:10 final size:10
Alignment explanation
Indices: 32829216--32829251 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
32829206 CCACTTTCAT
32829216 TTTTCCCTTC
1 TTTTCCCTTC
32829226 TTTTCCCTTC
1 TTTTCCCTTC
32829236 TCTTTCCCTTC
1 T-TTTCCCTTC
*
32829247 CTTTC
1 TTTTC
32829252 TTTTTTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 15 0.62
11 9 0.38
ACGTcount: A:0.00, C:0.42, G:0.00, T:0.58
Consensus pattern (10 bp):
TTTTCCCTTC
Found at i:32834127 original size:42 final size:42
Alignment explanation
Indices: 32834080--32834251 Score: 344
Period size: 42 Copynumber: 4.1 Consensus size: 42
32834070 CTTGCGATGG
32834080 TTAATCCAATGGTTTTAACAGATATTTATAATGGATTTCATA
1 TTAATCCAATGGTTTTAACAGATATTTATAATGGATTTCATA
32834122 TTAATCCAATGGTTTTAACAGATATTTATAATGGATTTCATA
1 TTAATCCAATGGTTTTAACAGATATTTATAATGGATTTCATA
32834164 TTAATCCAATGGTTTTAACAGATATTTATAATGGATTTCATA
1 TTAATCCAATGGTTTTAACAGATATTTATAATGGATTTCATA
32834206 TTAATCCAATGGTTTTAACAGATATTTATAATGGATTTCATA
1 TTAATCCAATGGTTTTAACAGATATTTATAATGGATTTCATA
32834248 TTAA
1 TTAA
32834252 GATTGTGAAT
Statistics
Matches: 130, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 130 1.00
ACGTcount: A:0.36, C:0.09, G:0.12, T:0.43
Consensus pattern (42 bp):
TTAATCCAATGGTTTTAACAGATATTTATAATGGATTTCATA
Found at i:32838948 original size:19 final size:21
Alignment explanation
Indices: 32838914--32838960 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 21
32838904 ATAATACATT
32838914 TTTTAAATTGTTATCAATATG
1 TTTTAAATTGTTATCAATATG
32838935 TTTTAAA-T-TTATCAATAT-
1 TTTTAAATTGTTATCAATATG
32838953 TATTTAAA
1 T-TTTAAA
32838961 AATACATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 1 0.04
19 16 0.64
20 1 0.04
21 7 0.28
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTAAATTGTTATCAATATG
Found at i:32839731 original size:19 final size:21
Alignment explanation
Indices: 32839697--32839743 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 21
32839687 ATAATGCATT
32839697 TTTTAAATTGTTATCAATATG
1 TTTTAAATTGTTATCAATATG
32839718 TTTTAAA-T-TTATCAATAT-
1 TTTTAAATTGTTATCAATATG
32839736 TATTTAAA
1 T-TTTAAA
32839744 AATACATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 1 0.04
19 16 0.64
20 1 0.04
21 7 0.28
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTAAATTGTTATCAATATG
Found at i:32849057 original size:19 final size:20
Alignment explanation
Indices: 32849022--32849060 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
32849012 TCCAAACGAG
32849022 GACTTGATGTATGTGGCAAA
1 GACTTGATGTATGTGGCAAA
32849042 GACTTGATGT-TGTGGCAAA
1 GACTTGATGTATGTGGCAAA
32849061 CACTGAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.28, C:0.10, G:0.31, T:0.31
Consensus pattern (20 bp):
GACTTGATGTATGTGGCAAA
Found at i:32852219 original size:132 final size:132
Alignment explanation
Indices: 32851970--32852526 Score: 881
Period size: 132 Copynumber: 4.2 Consensus size: 132
32851960 TAGGCATAAT
* *
32851970 TAGGTTGAAGATAGCAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCAAATCT
1 TAGGTTGAAGATAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCT
* *
32852035 TATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCGAA-CCTTATCTCCCTGAGCAGCAGTG
66 TATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACC-AAGCCTTGTCTCCCTGAGCAGCAGCG
32852099 GAG
130 GAG
* * * *
32852102 TAGGTCGAGGATAGCAGATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGAAGACGGCAAATCT
1 TAGGTTGAAGATAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCT
*
32852167 TATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTTTCCCTGAGCAGCAG-GA
66 TATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCG-
32852231 GAG
130 GAG
* *
32852234 TAGGTTGAAGATAGCAAATCTTATCTCCTTAAGCAGTAGTGGAGCAGATCGAAGACGGTAAATCT
1 TAGGTTGAAGATAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCT
*
32852299 TATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCTACCAAGCCTTGTCTCCCTGAGCAGCAGCGG
66 TATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGG
32852364 AG
131 AG
* * *
32852366 TAGGTTGAAGATTA-CAAATCTTATCTCCCTAAGCCGTAGTGGAGCAGATCAAAGAC-ACAAATC
1 TAGGTTGAAGA-TAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATC
* *
32852429 TTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGTAGTAGCG
65 TTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCG
32852494 GAG
130 GAG
*
32852497 TAGGTTGAAGATTA-CAAATCCTATCTCCCT
1 TAGGTTGAAGA-TAGCAAATCTTATCTCCCT
32852527 GAAGTTACAG
Statistics
Matches: 400, Mismatches: 21, Indels: 9
0.93 0.05 0.02
Matches are distributed among these distances:
131 102 0.25
132 295 0.74
133 3 0.01
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.25
Consensus pattern (132 bp):
TAGGTTGAAGATAGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCT
TATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGG
AG
Found at i:32854610 original size:19 final size:21
Alignment explanation
Indices: 32854576--32854622 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 21
32854566 ATAATACATT
32854576 TTTTAAATTGTTATCAATATG
1 TTTTAAATTGTTATCAATATG
32854597 TTTTAAA-T-TTATCAATAT-
1 TTTTAAATTGTTATCAATATG
32854615 TATTTAAA
1 T-TTTAAA
32854623 AATACATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
18 1 0.04
19 16 0.64
20 1 0.04
21 7 0.28
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTAAATTGTTATCAATATG
Found at i:32854682 original size:104 final size:104
Alignment explanation
Indices: 32854563--32854756 Score: 370
Period size: 104 Copynumber: 1.9 Consensus size: 104
32854553 AAAAAAAGAT
* *
32854563 ATAATAATACATTTTTTAAATTGTTATCAATATGTTTTAAATTTATCAATATTATTTAAAAATAC
1 ATAATAATACATTTTTTAAATTGTTATCAAGATGTTTTAAAATTATCAATATTATTTAAAAATAC
32854628 ATATAATTTAAATTAGATTATTTTTTTTTAAAAGATATA
66 ATATAATTTAAATTAGATTATTTTTTTTTAAAAGATATA
32854667 ATAATAATACATTTTTTAAATTGTTATCAAGATGTTTTAAAATTATCAATATTATTTAAAAATAC
1 ATAATAATACATTTTTTAAATTGTTATCAAGATGTTTTAAAATTATCAATATTATTTAAAAATAC
32854732 ATATAATTTAAATTAGATTATTTTT
66 ATATAATTTAAATTAGATTATTTTT
32854757 AGTATATATA
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
104 88 1.00
ACGTcount: A:0.43, C:0.04, G:0.04, T:0.48
Consensus pattern (104 bp):
ATAATAATACATTTTTTAAATTGTTATCAAGATGTTTTAAAATTATCAATATTATTTAAAAATAC
ATATAATTTAAATTAGATTATTTTTTTTTAAAAGATATA
Found at i:32877105 original size:17 final size:18
Alignment explanation
Indices: 32877074--32877107 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
32877064 CATTATATTT
32877074 GCCCGTGTGGGCCCACAC
1 GCCCGTGTGGGCCCACAC
32877092 GCCCGTGT-GGCCCACA
1 GCCCGTGTGGGCCCACA
32877108 TGGTCCAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.12, C:0.44, G:0.32, T:0.12
Consensus pattern (18 bp):
GCCCGTGTGGGCCCACAC
Found at i:32897775 original size:33 final size:33
Alignment explanation
Indices: 32897729--32897799 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
32897719 AGAAGAAGTT
32897729 AGGGTTTTAATTGATTTAGCAAAAGTGTT-TGGA
1 AGGGTTTTAATTGATTTAGCAAAAGTGTTCT-GA
*
32897762 AGGGTTTTGATTGATTTAGCAAAAGTGTTCTGA
1 AGGGTTTTAATTGATTTAGCAAAAGTGTTCTGA
32897795 AGGGT
1 AGGGT
32897800 GACTGAGTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
33 35 0.97
34 1 0.03
ACGTcount: A:0.28, C:0.04, G:0.30, T:0.38
Consensus pattern (33 bp):
AGGGTTTTAATTGATTTAGCAAAAGTGTTCTGA
Found at i:32903361 original size:19 final size:19
Alignment explanation
Indices: 32903309--32903363 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
32903299 AAAAATTCAC
* *
32903309 AAAAATTATAAACATTATTT
1 AAAAAATATAAA-ATTATTA
* * *
32903329 TAAAAATTTTAAATTATTA
1 AAAAAATATAAAATTATTA
32903348 AAAAAATATAAAATTA
1 AAAAAATATAAAATTA
32903364 AAATAAATAT
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
19 19 0.70
20 8 0.30
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (19 bp):
AAAAAATATAAAATTATTA
Found at i:32918503 original size:43 final size:43
Alignment explanation
Indices: 32918450--32918597 Score: 185
Period size: 43 Copynumber: 3.5 Consensus size: 43
32918440 TATCCCAAAT
** * *
32918450 ATGGTCTTACACGTAATCTTGTATTGATGCCAATAGCCCAGCC
1 ATGGTCTTACACGTAATCTCATATCGATGCCAATAGCCCAGAC
* *
32918493 ATGGTCTTACACGAAATCCCATATCGATGCCAAT-GTCCCAGAC
1 ATGGTCTTACACGTAATCTCATATCGATGCCAATAG-CCCAGAC
* *
32918536 ATGGTCTTACACG-AAGTCTCATATCGATGCC-ATATCCCAGAT
1 ATGGTCTTACACGTAA-TCTCATATCGATGCCAATAGCCCAGAC
32918578 ATGGTCTTACACGTAATCTC
1 ATGGTCTTACACGTAATCTC
32918598 GGTAACCTTA
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
42 28 0.30
43 64 0.70
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACACGTAATCTCATATCGATGCCAATAGCCCAGAC
Found at i:32921747 original size:19 final size:20
Alignment explanation
Indices: 32921703--32921747 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
32921693 TTCATGTTCA
32921703 TATTTTTAACATAATTTAAT
1 TATTTTTAACATAATTTAAT
32921723 TA-TTTTATA-ATAA-TTAAT
1 TATTTTTA-ACATAATTTAAT
32921741 TATTTTT
1 TATTTTT
32921748 CGACGAGAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 7 0.30
19 13 0.57
20 3 0.13
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (20 bp):
TATTTTTAACATAATTTAAT
Found at i:32930118 original size:15 final size:15
Alignment explanation
Indices: 32930098--32930136 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
32930088 CCATTTGATC
32930098 ACTTCCTTCCTCACA
1 ACTTCCTTCCTCACA
32930113 ACTTCCTTCCTCACA
1 ACTTCCTTCCTCACA
32930128 ACTTCCTTC
1 ACTTCCTTC
32930137 ATAATAGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.18, C:0.46, G:0.00, T:0.36
Consensus pattern (15 bp):
ACTTCCTTCCTCACA
Found at i:32934623 original size:14 final size:14
Alignment explanation
Indices: 32934604--32934631 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
32934594 CCAATTTATT
32934604 AATGAATTATTAAA
1 AATGAATTATTAAA
32934618 AATGAATTATTAAA
1 AATGAATTATTAAA
32934632 TATAACTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
AATGAATTATTAAA
Found at i:32936216 original size:283 final size:283
Alignment explanation
Indices: 32935709--32936273 Score: 1103
Period size: 283 Copynumber: 2.0 Consensus size: 283
32935699 TGATATCCTG
32935709 GGGAATAAAATATCCAGAAGAAAATACCACTCATACACACTGAAGTCAATTATGACATAAGCAAT
1 GGGAATAAAATATCCAGAAGAAAATACCACTCATACACACTGAAGTCAATTATGACATAAGCAAT
32935774 ATAATCTTCATGTATACTAAGCAGTTTAATAACTAGTAGGAACAGAATACTATCATCGCACAGAT
66 ATAATCTTCATGTATACTAAGCAGTTTAATAACTAGTAGGAACAGAATACTATCATCGCACAGAT
32935839 TCTATCATCAACGTTTCTTTAACAAAAAGAAATGGAATACCAATGAAAGATAAAGCAAGGTCGAA
131 TCTATCATCAACGTTTCTTTAACAAAAAGAAATGGAATACCAATGAAAGATAAAGCAAGGTCGAA
32935904 CATAACCCAAATAGACCAACAATGCTTTCATCTATTAGTATATTTAGCTAATGTTCTCATACGAT
196 CATAACCCAAATAGACCAACAATGCTTTCATCTATTAGTATATTTAGCTAATGTTCTCATACGAT
32935969 AAGAGTTTCATTTGAAGATATTA
261 AAGAGTTTCATTTGAAGATATTA
32935992 GGGAATAAAATATCCAGAAGAAAATACCACTCATACACACTGAAGTCAATTATGACATAAGCAAT
1 GGGAATAAAATATCCAGAAGAAAATACCACTCATACACACTGAAGTCAATTATGACATAAGCAAT
32936057 ATAATCTTCATGTATACTAAGCAGTTTAATAACTAGTAGGAACAGAATACTATCATCGCACAGAT
66 ATAATCTTCATGTATACTAAGCAGTTTAATAACTAGTAGGAACAGAATACTATCATCGCACAGAT
* * *
32936122 TCTATCATCAACGTTTCTTTAACAAAAAGAAATGGAATGCCAATGAAAGATAGAGCAATGTCGAA
131 TCTATCATCAACGTTTCTTTAACAAAAAGAAATGGAATACCAATGAAAGATAAAGCAAGGTCGAA
32936187 CATAACCCAAATAGACCAACAATGCTTTCATCTATTAGTATATTTAGCTAATGTTCTCATACGAT
196 CATAACCCAAATAGACCAACAATGCTTTCATCTATTAGTATATTTAGCTAATGTTCTCATACGAT
32936252 AAGAGTTTCATTTGAAGATATT
261 AAGAGTTTCATTTGAAGATATT
32936274 CAACCACATA
Statistics
Matches: 279, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
283 279 1.00
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28
Consensus pattern (283 bp):
GGGAATAAAATATCCAGAAGAAAATACCACTCATACACACTGAAGTCAATTATGACATAAGCAAT
ATAATCTTCATGTATACTAAGCAGTTTAATAACTAGTAGGAACAGAATACTATCATCGCACAGAT
TCTATCATCAACGTTTCTTTAACAAAAAGAAATGGAATACCAATGAAAGATAAAGCAAGGTCGAA
CATAACCCAAATAGACCAACAATGCTTTCATCTATTAGTATATTTAGCTAATGTTCTCATACGAT
AAGAGTTTCATTTGAAGATATTA
Found at i:32940905 original size:27 final size:27
Alignment explanation
Indices: 32940865--32941330 Score: 523
Period size: 27 Copynumber: 17.3 Consensus size: 27
32940855 GTAATGGGCT
* *
32940865 TAAAATGACCGAAATACCCTCGAACGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* *
32940892 TAAAATGACTGAAATGCCAC-CGAATGG
1 TAAAATGACTGAAATACC-CTCGAAGGG
* *
32940919 TAAAATAACCT-ATATACCCTCGAAGGG
1 TAAAATGA-CTGAAATACCCTCGAAGGG
*
32940946 TAAAATGACTGAAATACCTTCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* *
32940973 TAAAATGACTGAAATACCTTTGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* * **
32941000 TAAAATGACTAAAATACCATCGAAGCA
1 TAAAATGACTGAAATACCCTCGAAGGG
* *
32941027 TAAAATGACCGAAATACCCTTGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
*
32941054 TAAAATGACCGAAATACCCTCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* * * *
32941081 TAAAATGACTGAAACACCCCCAAAAGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* * *
32941108 TAAAATGACCGAAATACCC-CTAAAGTG
1 TAAAATGACTGAAATACCCTC-GAAGGG
*
32941135 TAAAATGA-TCGAAATACCCTCGAAAGG
1 TAAAATGACT-GAAATACCCTCGAAGGG
32941162 TAAAATGACTGAAATACCCTCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* *
32941189 TAAAATGACTGAAATACCCTCAAAAGG
1 TAAAATGACTGAAATACCCTCGAAGGG
*
32941216 TAAAATGACTAAAATACCCTCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* *
32941243 TAAAATGACTAAAATACCC-CTAAAGGG
1 TAAAATGACTGAAATACCCTC-GAAGGG
* **
32941270 TAAAACGACCAAAATACCCTCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* *
32941297 TAAAAT-AATCGAAATACCC-CAAAGGG
1 TAAAATGACT-GAAATACCCTCGAAGGG
32941323 TAAAATGA
1 TAAAATGA
32941331 TTGTTATAAC
Statistics
Matches: 376, Mismatches: 51, Indels: 24
0.83 0.11 0.05
Matches are distributed among these distances:
26 18 0.05
27 352 0.94
28 6 0.02
ACGTcount: A:0.44, C:0.20, G:0.18, T:0.18
Consensus pattern (27 bp):
TAAAATGACTGAAATACCCTCGAAGGG
Found at i:32941535 original size:26 final size:26
Alignment explanation
Indices: 32941480--32941579 Score: 103
Period size: 26 Copynumber: 3.8 Consensus size: 26
32941470 AAGGGAAGTA
** **
32941480 TACTG-TACTGGTGGCTTTGCCACAT
1 TACTGTTACTGGCAGCTTTGCTGCAT
*
32941505 ATACTGTTACTGGCAGCTTTGCTGCGT
1 -TACTGTTACTGGCAGCTTTGCTGCAT
*
32941532 TACTGTTACTGGCAGCGTTGCTGCAT
1 TACTGTTACTGGCAGCTTTGCTGCAT
* * *
32941558 CACTATTACTGACAGCTTTGCT
1 TACTGTTACTGGCAGCTTTGCT
32941580 ACGATATTGG
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
26 47 0.76
27 15 0.24
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
TACTGTTACTGGCAGCTTTGCTGCAT
Found at i:32941723 original size:28 final size:28
Alignment explanation
Indices: 32941679--32941743 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
32941669 ACTGCATTGT
* *
32941679 ACTGTTACTGTATTGGGCTAAGGCCCAC
1 ACTGTTACTGAAATGGGCTAAGGCCCAC
32941707 ACTGTTACTGAAATGGGCTAAGGCCCAC
1 ACTGTTACTGAAATGGGCTAAGGCCCAC
32941735 ACTG-TACTG
1 ACTGTTACTG
32941744 CTACTGAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
27 5 0.14
28 30 0.86
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (28 bp):
ACTGTTACTGAAATGGGCTAAGGCCCAC
Found at i:32941749 original size:33 final size:32
Alignment explanation
Indices: 32941676--32941751 Score: 88
Period size: 28 Copynumber: 2.4 Consensus size: 32
32941666 ATTACTGCAT
* *
32941676 TGTACTGTTACTGTATTGGGCTAAGGCCCACAC
1 TGTACTG-TACTGAAATGGGCTAAGGCCCACAC
32941709 TG---T-TACTGAAATGGGCTAAGGCCCACAC
1 TGTACTGTACTGAAATGGGCTAAGGCCCACAC
32941737 TGTACTGCTACTGAA
1 TGTACTG-TACTGAA
32941752 TAGGGCTTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
28 25 0.69
30 1 0.03
31 1 0.03
33 9 0.25
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.28
Consensus pattern (32 bp):
TGTACTGTACTGAAATGGGCTAAGGCCCACAC
Found at i:32941758 original size:33 final size:32
Alignment explanation
Indices: 32941676--32941763 Score: 87
Period size: 28 Copynumber: 2.8 Consensus size: 32
32941666 ATTACTGCAT
* *
32941676 TGTACTGTTACTGTATTGGGCTAAGGCCCACAC
1 TGTACTG-TACTGAATAGGGCTAAGGCCCACAC
32941709 TG---T-TACTGAA-ATGGGCTAAGGCCCACAC
1 TGTACTGTACTGAATA-GGGCTAAGGCCCACAC
*
32941737 TGTACTGCTACTGAATAGGGCTTAGGC
1 TGTACTG-TACTGAATAGGGCTAAGGC
32941764 ATAGACTATT
Statistics
Matches: 45, Mismatches: 3, Indels: 14
0.73 0.05 0.23
Matches are distributed among these distances:
28 24 0.53
30 1 0.02
31 1 0.02
33 18 0.40
34 1 0.02
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (32 bp):
TGTACTGTACTGAATAGGGCTAAGGCCCACAC
Found at i:32944116 original size:42 final size:43
Alignment explanation
Indices: 32944004--32944117 Score: 151
Period size: 43 Copynumber: 2.7 Consensus size: 43
32943994 ATCTTGTATT
* * *
32944004 GATGCCAATAGCCTAGCCATGGTCTTACACGAAATCACATATC
1 GATGCCAATATCCCAGACATGGTCTTACACGAAATCACATATC
* *
32944047 GATGCCAATGTCCCAGACATGGTCTTACAC-AAAGTCTCATATC
1 GATGCCAATATCCCAGACATGGTCTTACACGAAA-TCACATATC
*
32944090 GATGCC-ATATCCCAGATATGGTCTTACA
1 GATGCCAATATCCCAGACATGGTCTTACA
32944118 AGTAATCTCG
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
42 23 0.37
43 40 0.63
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (43 bp):
GATGCCAATATCCCAGACATGGTCTTACACGAAATCACATATC
Found at i:32946229 original size:21 final size:19
Alignment explanation
Indices: 32946203--32946274 Score: 81
Period size: 21 Copynumber: 3.5 Consensus size: 19
32946193 TGACCCTTTT
*
32946203 TATTAAAATAAATAATATTAA
1 TATTAAAATAAAT-AT-TAAA
*
32946224 TATTAATATTAAATATTAAA
1 TATTAA-AATAAATATTAAA
32946244 TATTAAATATTAAATATTAAA
1 TATTAAA-A-TAAATATTAAA
32946265 TATTAAAATA
1 TATTAAAATA
32946275 TTAAAATTAA
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
19 3 0.07
20 10 0.22
21 26 0.58
22 6 0.13
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TATTAAAATAAATATTAAA
Found at i:32946238 original size:7 final size:7
Alignment explanation
Indices: 32946216--32946285 Score: 110
Period size: 7 Copynumber: 10.3 Consensus size: 7
32946206 TAAAATAAAT
32946216 AATATT-
1 AATATTA
32946222 AATATT-
1 AATATTA
32946228 AATATTA
1 AATATTA
32946235 AATATTA
1 AATATTA
32946242 AATATTA
1 AATATTA
32946249 AATATTA
1 AATATTA
32946256 AATATTA
1 AATATTA
32946263 AATATTAA
1 AATATT-A
32946271 AATATTA
1 AATATTA
32946278 AA-ATTA
1 AATATTA
32946284 AA
1 AA
32946286 GACAAAGATA
Statistics
Matches: 62, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
6 18 0.29
7 37 0.60
8 7 0.11
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AATATTA
Found at i:32957845 original size:17 final size:17
Alignment explanation
Indices: 32957823--32957856 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
32957813 ATAGACTCGC
*
32957823 TTAGATATACTTAGTAT
1 TTAGATATAATTAGTAT
32957840 TTAGATATAATTAGTAT
1 TTAGATATAATTAGTAT
32957857 AATATACCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (17 bp):
TTAGATATAATTAGTAT
Found at i:32963058 original size:20 final size:21
Alignment explanation
Indices: 32963033--32963072 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
32963023 AATTTTAAAA
32963033 TATTTTTAAAAT-AATTTTTT
1 TATTTTTAAAATAAATTTTTT
32963053 TATTTTTAAAATAAATTTTT
1 TATTTTTAAAATAAATTTTT
32963073 GGTTTTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TATTTTTAAAATAAATTTTTT
Found at i:32963078 original size:20 final size:20
Alignment explanation
Indices: 32963034--32963080 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
32963024 ATTTTAAAAT
* *
32963034 ATTTTTAAAATAATTTTTTT
1 ATTTTTAAAATAAATTTTTG
32963054 ATTTTTAAAATAAATTTTTG
1 ATTTTTAAAATAAATTTTTG
*
32963074 GTTTTTA
1 ATTTTTA
32963081 TTAAAAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (20 bp):
ATTTTTAAAATAAATTTTTG
Found at i:32965710 original size:28 final size:28
Alignment explanation
Indices: 32965676--32965731 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
32965666 GATTTTGGCT
32965676 TCTCCACCATGCTGGTCAGCTGATTTTC
1 TCTCCACCATGCTGGTCAGCTGATTTTC
32965704 TCTCCACCATGCTGGTCAGCTGATTTTC
1 TCTCCACCATGCTGGTCAGCTGATTTTC
32965732 AGTTGGAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.14, C:0.32, G:0.18, T:0.36
Consensus pattern (28 bp):
TCTCCACCATGCTGGTCAGCTGATTTTC
Found at i:32965909 original size:38 final size:38
Alignment explanation
Indices: 32965857--32965936 Score: 135
Period size: 38 Copynumber: 2.1 Consensus size: 38
32965847 ATTTCTTTCC
32965857 CAATCTGCAAAAAACCCTGCTCTTCAACT-CTTGCTCTT
1 CAATCTGCAAAAAACCCTGCTCTTCAACTCCTT-CTCTT
*
32965895 CAATCTGCAGAAAACCCTGCTCTTCAACTCCTTCTCTT
1 CAATCTGCAAAAAACCCTGCTCTTCAACTCCTTCTCTT
32965933 CAAT
1 CAAT
32965937 TGACACTCTT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
38 37 0.93
39 3 0.08
ACGTcount: A:0.26, C:0.35, G:0.07, T:0.31
Consensus pattern (38 bp):
CAATCTGCAAAAAACCCTGCTCTTCAACTCCTTCTCTT
Found at i:32967640 original size:24 final size:24
Alignment explanation
Indices: 32967613--32967664 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
32967603 ATGGTTCTTG
32967613 ACATTAAATAAATAATGCAATAAA
1 ACATTAAATAAATAATGCAATAAA
*
32967637 ACATTAAATAAATAATGGAATAAA
1 ACATTAAATAAATAATGCAATAAA
32967661 ACAT
1 ACAT
32967665 ACCTTACAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.62, C:0.08, G:0.06, T:0.25
Consensus pattern (24 bp):
ACATTAAATAAATAATGCAATAAA
Found at i:32969577 original size:22 final size:23
Alignment explanation
Indices: 32969534--32969579 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
32969524 AAAAATGCTA
*
32969534 AAAATCATTTAAAATTATAAAAT
1 AAAATAATTTAAAATTATAAAAT
*
32969557 AAAATAATTTAAATTTA-AAAAT
1 AAAATAATTTAAAATTATAAAAT
32969579 A
1 A
32969580 TATATTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (23 bp):
AAAATAATTTAAAATTATAAAAT
Found at i:32973366 original size:21 final size:21
Alignment explanation
Indices: 32973315--32973369 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
32973305 ACCATTGTTT
*
32973315 CTAATATCACCGCTACAGTAT
1 CTAATATCACCGCTACAGTAA
* * *
32973336 CCAATTTCACTGCTACAGTAA
1 CTAATATCACCGCTACAGTAA
*
32973357 CTAATCTCACCGC
1 CTAATATCACCGC
32973370 CACCGCTATT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.33, G:0.09, T:0.27
Consensus pattern (21 bp):
CTAATATCACCGCTACAGTAA
Found at i:32981643 original size:24 final size:24
Alignment explanation
Indices: 32981616--32981661 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
32981606 AGAACAATCC
* *
32981616 CAAAAGGAAATGCAGGAGCAGCTT
1 CAAAAGCAAATGAAGGAGCAGCTT
*
32981640 CAAAAGCAAATGAATGAGCAGC
1 CAAAAGCAAATGAAGGAGCAGC
32981662 AAAAGATGAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (24 bp):
CAAAAGCAAATGAAGGAGCAGCTT
Found at i:32990091 original size:44 final size:45
Alignment explanation
Indices: 32990041--32990429 Score: 486
Period size: 45 Copynumber: 8.7 Consensus size: 45
32990031 TAACATATCG
32990041 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-TAGGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT-GGCA
32990085 AGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGATGGCA
* *
32990130 AATCTAATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-TAGGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT-GGCA
32990174 AGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGATGGCA
* *
32990219 AATCTAATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-TAGGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT-GGCA
32990263 AGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGATGGCA
* *
32990308 AATCTAATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAG-TAGGCA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGAT-GGCA
32990352 AGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTGAAGATGGCA
* *
32990397 AATCTAATCTCCCTGAAGTTGCAGTGGAGCAGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
32990430 TTAAAGCCGA
Statistics
Matches: 304, Mismatches: 14, Indels: 53
0.82 0.04 0.14
Matches are distributed among these distances:
43 15 0.05
44 135 0.44
45 138 0.45
46 16 0.05
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (45 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATGGCA
Found at i:32990198 original size:89 final size:89
Alignment explanation
Indices: 32990047--32990429 Score: 766
Period size: 89 Copynumber: 4.3 Consensus size: 89
32990037 ATCGAGTCTT
32990047 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
32990112 GGCAGACTGAAGATGGCAAATCTA
66 GGCAGACTGAAGATGGCAAATCTA
32990136 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
32990201 GGCAGACTGAAGATGGCAAATCTA
66 GGCAGACTGAAGATGGCAAATCTA
32990225 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
32990290 GGCAGACTGAAGATGGCAAATCTA
66 GGCAGACTGAAGATGGCAAATCTA
32990314 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
32990379 GGCAGACTGAAGATGGCAAATCTA
66 GGCAGACTGAAGATGGCAAATCTA
32990403 ATCTCCCTGAAGTTGCAGTGGAGCAGA
1 ATCTCCCTGAAGTTGCAGTGGAGCAGA
32990430 TTAAAGCCGA
Statistics
Matches: 294, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 294 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (89 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAGGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
GGCAGACTGAAGATGGCAAATCTA
Found at i:32990467 original size:44 final size:44
Alignment explanation
Indices: 32990403--32990606 Score: 141
Period size: 44 Copynumber: 4.7 Consensus size: 44
32990393 GGCAAATCTA
* *
32990403 ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCT
1 ATCTTCCTAAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCT
* ** * * * *
32990447 ATCTTCCTAAAGTTACAGTGGAGTGGATTAAAACC-TTGGATCTT
1 ATCTTCCTAAAGTTGCAGTGGAGCAGATTAAAGCCGAT-AATCCT
* * ** **** * *
32990491 ATC-TCTCTGAAGTTGCAG-AGAGC--A-TATCGTATTTAGTCTT
1 ATCTTC-CTAAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCT
*
32990531 ATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCT
1 ATCTTCCTAAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCT
* **
32990575 ATCTTCCTAAAGTTACAGTGGAGTGGATTAAA
1 ATCTTCCTAAAGTTGCAGTGGAGCAGATTAAA
32990607 ACCTTGGATT
Statistics
Matches: 117, Mismatches: 35, Indels: 16
0.70 0.21 0.10
Matches are distributed among these distances:
40 20 0.17
41 8 0.07
43 7 0.06
44 82 0.70
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (44 bp):
ATCTTCCTAAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCT
Found at i:32990558 original size:128 final size:127
Alignment explanation
Indices: 32990403--32990674 Score: 490
Period size: 128 Copynumber: 2.1 Consensus size: 127
32990393 GGCAAATCTA
32990403 ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTTCCTAAAGTTACAGTGG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTTCCTAAAGTTACAGTGG
* *
32990468 AGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCATATCGTATTTAGTCTT
66 AGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAAAGAGCA-ATCGGATTTAGTCTT
*
32990531 ATCTCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTTCCTAAAGTTACAGTGG
1 ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTTCCTAAAGTTACAGTGG
* *
32990596 AGTGGATTAAAACCTTGGATTTTATCTCTCTGAAGTTGCAAAGAGTAATCGGATTTAGTCTT
66 AGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAAAGAGCAATCGGATTTAGTCTT
32990658 ATCTCCCTGAAGTTGCA
1 ATCTCCCTGAAGTTGCA
32990675 CCAGGAGTGG
Statistics
Matches: 138, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
127 30 0.22
128 108 0.78
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32
Consensus pattern (127 bp):
ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTTCCTAAAGTTACAGTGG
AGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAAAGAGCAATCGGATTTAGTCTT
Found at i:32993945 original size:60 final size:60
Alignment explanation
Indices: 32993878--32993998 Score: 208
Period size: 60 Copynumber: 2.0 Consensus size: 60
32993868 ATGTGTTTTC
32993878 GCCGAAAAATGGATGAATGTATGT-GACAATATTTACAATGTACGATGATGGCAAAAATAT
1 GCCGAAAAATGGATGAATGTATGTAG-CAATATTTACAATGTACGATGATGGCAAAAATAT
* *
32993938 GCCGAAAAATGGATGAATGTATGTAGCAATATTTACCATGTACGATGATGGCGAAAATAT
1 GCCGAAAAATGGATGAATGTATGTAGCAATATTTACAATGTACGATGATGGCAAAAATAT
32993998 G
1 G
32993999 ATATTAACAA
Statistics
Matches: 58, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
60 57 0.98
61 1 0.02
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (60 bp):
GCCGAAAAATGGATGAATGTATGTAGCAATATTTACAATGTACGATGATGGCAAAAATAT
Found at i:32994057 original size:12 final size:11
Alignment explanation
Indices: 32994040--32994114 Score: 69
Period size: 12 Copynumber: 6.4 Consensus size: 11
32994030 ATGAAATGAC
32994040 AATACTATAAT
1 AATACTATAAT
32994051 GAATACTATAAT
1 -AATACTATAAT
*
32994063 AATAATAATAAT
1 AATACT-ATAAT
*
32994075 AATAATAATAAT
1 AATACT-ATAAT
*
32994087 AATAATAATAAT
1 AATACT-ATAAT
*
32994099 AATAATAATAAT
1 AATACT-ATAAT
32994111 AATA
1 AATA
32994115 ATAACTACAA
Statistics
Matches: 61, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
11 5 0.08
12 56 0.92
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.33
Consensus pattern (11 bp):
AATACTATAAT
Found at i:32994066 original size:3 final size:3
Alignment explanation
Indices: 32994058--32994118 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
32994048 AATGAATACT
32994058 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
32994106 ATA ATA ATA ATA A
1 ATA ATA ATA ATA A
32994119 CTACAACAAC
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:33001148 original size:23 final size:23
Alignment explanation
Indices: 33001122--33001166 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
33001112 ATGTTTTGGG
*
33001122 TGTAATATCCCGAAAATTACTAC
1 TGTAATAACCCGAAAATTACTAC
33001145 TGTAATAACCCGAAAATTACTA
1 TGTAATAACCCGAAAATTACTA
33001167 AAGTAAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.42, C:0.20, G:0.09, T:0.29
Consensus pattern (23 bp):
TGTAATAACCCGAAAATTACTAC
Found at i:33001172 original size:23 final size:23
Alignment explanation
Indices: 33001123--33001172 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
33001113 TGTTTTGGGT
* **
33001123 GTAATATCCCGAAAATTACTACT
1 GTAATAACCCGAAAATTACTAAA
33001146 GTAATAACCCGAAAATTACTAAA
1 GTAATAACCCGAAAATTACTAAA
33001169 GTAA
1 GTAA
33001173 GAAAGTAGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.46, C:0.18, G:0.10, T:0.26
Consensus pattern (23 bp):
GTAATAACCCGAAAATTACTAAA
Found at i:33004260 original size:50 final size:50
Alignment explanation
Indices: 33004140--33004419 Score: 285
Period size: 50 Copynumber: 5.5 Consensus size: 50
33004130 TGTGAGCCAG
** * *
33004140 TGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATAAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGTGTTGGCA-C--CGAG---ATGAGAGGTCCCA
*
33004196 TGTAAGACCATGTCTGGGACATGGTGTTAGCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATGAGAGGTCCCA
* *
33004246 TGTAAGACCTTGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATGAGAGGTCCCA
* * *
33004296 TGTAAGACCATGTCTAGGACATAGTGTTGGCACCGAGATGAGAGGTCCCC
1 TGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATGAGAGGTCCCA
* * *** * * **
33004346 CGTAA-ATCCATGTCTAGGACATGG-CACGGACACCAATATGAGAACTCCCA
1 TGTAAGA-CCATGTCTGGGACATGGTGTTGG-CACCGAGATGAGAGGTCCCA
* *
33004396 TGTAAGACCATATCTGGGATATGG
1 TGTAAGACCATGTCTGGGACATGG
33004420 CATTTGCAGT
Statistics
Matches: 194, Mismatches: 27, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
49 3 0.02
50 157 0.81
51 1 0.01
53 3 0.02
55 1 0.01
56 29 0.15
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATGAGAGGTCCCA
Found at i:33005983 original size:23 final size:23
Alignment explanation
Indices: 33005957--33006000 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
33005947 GGGAGAAATG
*
33005957 TAATATCCCAAAAATTACTACTA
1 TAATACCCCAAAAATTACTACTA
33005980 TAATACCCCAAAAATTACTAC
1 TAATACCCCAAAAATTACTAC
33006001 AGTAAGAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.48, C:0.25, G:0.00, T:0.27
Consensus pattern (23 bp):
TAATACCCCAAAAATTACTACTA
Found at i:33016934 original size:24 final size:24
Alignment explanation
Indices: 33016882--33016955 Score: 87
Period size: 24 Copynumber: 3.0 Consensus size: 24
33016872 TCTAGGCTTA
*
33016882 TTAACGGGAAGCTCACAAAAAGC-C
1 TTAACGGGAAGCTC-CGAAAAGCAC
* *
33016906 TTTAACGGGTAGCTCTGAAAAGCAC
1 -TTAACGGGAAGCTCCGAAAAGCAC
*
33016931 TTAACGGGAAGCTCCGAAGAGCAC
1 TTAACGGGAAGCTCCGAAAAGCAC
33016955 T
1 T
33016956 ATACCCGAAA
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
24 28 0.67
25 14 0.33
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (24 bp):
TTAACGGGAAGCTCCGAAAAGCAC
Found at i:33018704 original size:6 final size:6
Alignment explanation
Indices: 33018693--33018728 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
33018683 ACTTATTTGG
*
33018693 TAAGTT TAAGTT TAATTT TAAGTT TAAGTT TAAGTT
1 TAAGTT TAAGTT TAAGTT TAAGTT TAAGTT TAAGTT
33018729 ATACGAGCTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (6 bp):
TAAGTT
Found at i:33025185 original size:20 final size:20
Alignment explanation
Indices: 33025145--33025195 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
33025135 GTAACCCCTA
33025145 TTTTT-AAAATTTTCAATTTT
1 TTTTTCAAAATTTTC-ATTTT
33025165 TTTTTCAAAATTTTC-TGTTT
1 TTTTTCAAAATTTTCAT-TTT
*
33025185 TGTTTCAAAAT
1 TTTTTCAAAAT
33025196 GAACCCCGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 1 0.04
20 18 0.64
21 9 0.32
ACGTcount: A:0.27, C:0.08, G:0.04, T:0.61
Consensus pattern (20 bp):
TTTTTCAAAATTTTCATTTT
Found at i:33026337 original size:3 final size:3
Alignment explanation
Indices: 33026324--33026367 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
33026314 NNNNNNTTAA
33026324 TAT TA- TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
33026368 CTTCACTATA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:33028297 original size:22 final size:21
Alignment explanation
Indices: 33028258--33028301 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
33028248 AACAATACAA
* *
33028258 AATTTATCATGATTAAATATT
1 AATTTATCATAATGAAATATT
33028279 AATTTATCATAAATGAAATATT
1 AATTTATCAT-AATGAAATATT
33028301 A
1 A
33028302 TTAATAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.48, C:0.05, G:0.05, T:0.43
Consensus pattern (21 bp):
AATTTATCATAATGAAATATT
Found at i:33031688 original size:5 final size:5
Alignment explanation
Indices: 33031678--33031711 Score: 52
Period size: 5 Copynumber: 6.8 Consensus size: 5
33031668 AAGCTAGTTT
33031678 TTTTG TTTTG TTTTG TTTTTG TTTTG TTTT- TTTT
1 TTTTG TTTTG TTTTG -TTTTG TTTTG TTTTG TTTT
33031712 TCCCTCTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.14
5 19 0.68
6 5 0.18
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (5 bp):
TTTTG
Found at i:33031696 original size:16 final size:15
Alignment explanation
Indices: 33031675--33031712 Score: 67
Period size: 16 Copynumber: 2.5 Consensus size: 15
33031665 TTAAAGCTAG
33031675 TTTTTTTGTTTTGTT
1 TTTTTTTGTTTTGTT
33031690 TTGTTTTTGTTTTGTT
1 TT-TTTTTGTTTTGTT
33031706 TTTTTTT
1 TTTTTTT
33031713 CCCTCTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 7 0.32
16 15 0.68
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (15 bp):
TTTTTTTGTTTTGTT
Found at i:33031697 original size:11 final size:11
Alignment explanation
Indices: 33031678--33031712 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
33031668 AAGCTAGTTT
33031678 TTTTG-TTTTG
1 TTTTGTTTTTG
33031688 TTTTGTTTTTG
1 TTTTGTTTTTG
33031699 TTTTGTTTTT-
1 TTTTGTTTTTG
33031709 TTTT
1 TTTT
33031713 CCCTCTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 9 0.38
11 15 0.62
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (11 bp):
TTTTGTTTTTG
Done.