Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold838

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5488
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34


Found at i:1651 original size:72 final size:72

Alignment explanation


    Indices: 1571--1707  Score: 229
    Period size: 72  Copynumber: 1.9  Consensus size: 72

       1561 TCTGCTGAAC

                                      *                                      
       1571 TAAGTTATCTTTCTCACAATGTAAACTTTCTTTACAATGCCACTTATCTTCAGTTTGAACTTTAG
          1 TAAGTTATCTTTCTCACAATGTAAACGTTCTTTACAATGCCACTTATCTTCAGTTTGAACTTTAG

                   
       1636 GCAAAAG
         66 GCAAAAG

                           **                                   *   *        
       1643 TAAGTTATCTTTCTCGTAATGTAAACGTTCTTTACAATGCCACTTATCTTCATTTTTAACTTTAG
          1 TAAGTTATCTTTCTCACAATGTAAACGTTCTTTACAATGCCACTTATCTTCAGTTTGAACTTTAG

       1708 ACAATTAATG


Statistics
Matches: 60,  Mismatches: 5, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  72   60  1.00

ACGTcount: A:0.28, C:0.19, G:0.10, T:0.42


Consensus pattern (72 bp):   
TAAGTTATCTTTCTCACAATGTAAACGTTCTTTACAATGCCACTTATCTTCAGTTTGAACTTTAG
GCAAAAG
Done.