Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1038

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3208
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33


Found at i:703 original size:114 final size:115

Alignment explanation


    Indices: 545--772  Score: 440
    Period size: 114  Copynumber: 2.0  Consensus size: 115

        535 TATTGATGAT

                                                                      *      
        545 GGCATGTAGCTTCGAAATCCCCTCATCTGTTCAAATGTTAATCAATCTCTAAAACAACTGTGTAT
          1 GGCATGTAGCTTCGAAATCCCCTCATCTGTTCAAATGTTAATCAATCTCTAAAACAACCGTGTAT

                                                              
        610 GGTCTGGATGGCAGAGGGAAGCTATTAGAATGAGCGTGGTGAATTGTTTC
         66 GGTCTGGATGGCAGAGGGAAGCTATTAGAATGAGCGTGGTGAATTGTTTC

                                                                             
        660 GGCATGTAGCTTCGAAAT-CCCTCATCTGTTCAAATGTTAATCAATCTCTAAAACAACCGTGTAT
          1 GGCATGTAGCTTCGAAATCCCCTCATCTGTTCAAATGTTAATCAATCTCTAAAACAACCGTGTAT

                                                             
        724 GGTCTGGATGGCAGAGGGAAGCTATTAGAATGAGCGTGGTGAATTGTTT
         66 GGTCTGGATGGCAGAGGGAAGCTATTAGAATGAGCGTGGTGAATTGTTT

        773 GGGCTGCCAT


Statistics
Matches: 112,  Mismatches: 1, Indels: 1
        0.98            0.01        0.01

Matches are distributed among these distances:
 114   94  0.84
 115   18  0.16

ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30


Consensus pattern (115 bp):   
GGCATGTAGCTTCGAAATCCCCTCATCTGTTCAAATGTTAATCAATCTCTAAAACAACCGTGTAT
GGTCTGGATGGCAGAGGGAAGCTATTAGAATGAGCGTGGTGAATTGTTTC
Done.