Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold3857
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 383
Length: 639
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Found at i:480 original size:147 final size:147
Alignment explanation
Indices: 155--557 Score: 618
Period size: 147 Copynumber: 2.7 Consensus size: 147
145 ATTATTTTTT
* *
155 GCGGCGTTTTTATAAAAAACTCCCCAAAAAATAATTTTACTTTAAAAAATAGCGAGATTTTTAGC
1 GCGGCGTTTTTATAAAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAGCGAGATTTTTAGC
*
220 ATAGCAAAACTA-TGTCGTTTTATTCCAAATGAAATATTTTTTTGCTGCGTTTTATATAAAAACG
66 ATAGCAAAAC-AGTGTCGTTTTATTCCAAATGAAATA-TTTTTTGCGGCGTTTTATATAAAAACG
284 CCGCAAAAGGTGAGCAATA
129 CCGCAAAAGGTGAGCAATA
*
303 GCGGCGTTTTTTATAAAAAATGCCAC--AAAATAATTTTACTTTAAAAAATAGCGAGATTTTTAG
1 GCGGCG-TTTTTATAAAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAGCGAGATTTTTAG
366 CATAGCAAAACAGTGTCGTTTTATTCCAAATGAAATATTTTTTGCGGCGTTTTATATAAAAACGC
65 CATAGCAAAACAGTGTCGTTTTATTCCAAATGAAATATTTTTTGCGGCGTTTTATATAAAAACGC
431 CGCAAAAGGTGAGCAATA
130 CGCAAAAGGTGAGCAATA
* * **
449 GCGGCGTTTTAATAAAAAACGCCACAAAAAATAATTTTAGTTTAAAAAATTAGCGCCA-TTTTA-
1 GCGGCGTTTTTATAAAAAACGCCACAAAAAATAATTTTACTTTAAAAAA-TAGCGAGATTTTTAG
* * * *
512 TATAGCAAAACAGTGTTGTTTTATTCAAAATAAAATAATTTTTTGC
65 CATAGCAAAACAGTGTCGTTTTATTCCAAATGAAAT-ATTTTTTGC
558 AATCAAAAAA
Statistics
Matches: 236, Mismatches: 13, Indels: 13
0.90 0.05 0.05
Matches are distributed among these distances:
145 17 0.07
146 84 0.36
147 107 0.45
148 12 0.05
149 16 0.07
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (147 bp):
GCGGCGTTTTTATAAAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAGCGAGATTTTTAGC
ATAGCAAAACAGTGTCGTTTTATTCCAAATGAAATATTTTTTGCGGCGTTTTATATAAAAACGCC
GCAAAAGGTGAGCAATA
Done.