Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3520

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 439

Length: 732
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33


Found at i:651 original size:15 final size:15

Alignment explanation


    Indices: 631--670  Score: 62
    Period size: 15  Copynumber: 2.7  Consensus size: 15

        621 TACGAATTTT

                           
        631 TTTAAAAAAAAGTGA
          1 TTTAAAAAAAAGTGA

                     **    
        646 TTTAAAAAATCGTGA
          1 TTTAAAAAAAAGTGA

                      
        661 TTTAAAAAAA
          1 TTTAAAAAAA

        671 TTGTTTGTGT


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  15   22  1.00

ACGTcount: A:0.57, C:0.03, G:0.10, T:0.30


Consensus pattern (15 bp):   
TTTAAAAAAAAGTGA

Done.